Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1023130 | XP_003623151.1 | 95.761 | 519 | 18 | 3 | 1 | 518 | 1 | 516 | 0.0 | 1017 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1023130 | sp|Q9LZM8|BLH9_ARATH | 47.791 | 498 | 192 | 16 | 72 | 518 | 95 | 575 | 3.25e-113 | 350 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1023130 | G7L5K2 | 95.761 | 519 | 18 | 3 | 1 | 518 | 1 | 516 | 0.0 | 1017 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1023130 | TF | HB-BELL |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0197100 | Msa1023130 | 0.812438 | 4.239937e-51 | -8.615850e-47 |
| Msa1023130 | Msa1107110 | 0.802673 | 5.017491e-49 | -8.615850e-47 |
| Msa1023130 | Msa1150670 | 0.806007 | 1.013996e-49 | -8.615850e-47 |
| Msa1023130 | Msa1374550 | 0.805714 | 1.168421e-49 | -8.615850e-47 |
| Msa1023130 | Msa1406780 | 0.802120 | 6.524172e-49 | -8.615850e-47 |
| Msa0239030 | Msa1023130 | 0.827104 | 1.880842e-54 | -8.615850e-47 |
| Msa0276740 | Msa1023130 | 0.822471 | 2.327625e-53 | -8.615850e-47 |
| Msa0316680 | Msa1023130 | 0.809437 | 1.893216e-50 | -8.615850e-47 |
| Msa0487630 | Msa1023130 | 0.803056 | 4.182279e-49 | -8.615850e-47 |
| Msa0967380 | Msa1023130 | 0.800497 | 1.401971e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1023130 | MtrunA17_Chr7g0240371 | 95.761 | 519 | 18 | 3 | 1 | 518 | 1 | 516 | 0.0 | 1017 |
| Msa1023130 | MtrunA17_Chr4g0008591 | 50.493 | 608 | 201 | 19 | 2 | 518 | 3 | 601 | 8.62e-166 | 483 |
| Msa1023130 | MtrunA17_Chr4g0028701 | 41.748 | 412 | 165 | 12 | 126 | 468 | 231 | 636 | 7.57e-82 | 268 |
| Msa1023130 | MtrunA17_Chr2g0327021 | 47.719 | 285 | 109 | 7 | 127 | 379 | 235 | 511 | 7.40e-76 | 251 |
| Msa1023130 | MtrunA17_Chr8g0387321 | 35.991 | 439 | 213 | 12 | 140 | 515 | 185 | 618 | 9.22e-64 | 218 |
| Msa1023130 | MtrunA17_Chr8g0373801 | 42.053 | 302 | 145 | 8 | 121 | 394 | 364 | 663 | 3.50e-62 | 218 |
| Msa1023130 | MtrunA17_Chr1g0155681 | 40.523 | 306 | 147 | 6 | 144 | 426 | 174 | 467 | 1.08e-61 | 213 |
| Msa1023130 | MtrunA17_Chr5g0403251 | 42.456 | 285 | 135 | 8 | 136 | 394 | 330 | 611 | 2.19e-61 | 214 |
| Msa1023130 | MtrunA17_Chr4g0025521 | 44.484 | 281 | 118 | 7 | 140 | 394 | 217 | 485 | 6.69e-61 | 213 |
| Msa1023130 | MtrunA17_Chr3g0141931 | 42.379 | 269 | 131 | 6 | 137 | 385 | 162 | 426 | 1.95e-59 | 202 |
| Msa1023130 | MtrunA17_Chr3g0141941 | 41.288 | 264 | 127 | 6 | 136 | 377 | 158 | 415 | 2.59e-59 | 204 |
| Msa1023130 | MtrunA17_Chr7g0267481 | 54.082 | 196 | 80 | 4 | 202 | 391 | 250 | 441 | 3.77e-59 | 207 |
| Msa1023130 | MtrunA17_Chr1g0177751 | 45.361 | 291 | 130 | 7 | 139 | 408 | 160 | 442 | 9.43e-59 | 206 |
| Msa1023130 | MtrunA17_Chr1g0151681 | 33.688 | 282 | 165 | 7 | 137 | 399 | 240 | 518 | 4.66e-39 | 149 |
| Msa1023130 | MtrunA17_Chr5g0398181 | 39.773 | 88 | 48 | 2 | 298 | 380 | 203 | 290 | 2.64e-11 | 64.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1023130 | AT5G02030.1 | 47.791 | 498 | 192 | 16 | 72 | 518 | 95 | 575 | 3.31e-114 | 350 |
| Msa1023130 | AT2G27990.1 | 51.190 | 252 | 114 | 4 | 130 | 379 | 252 | 496 | 9.23e-76 | 250 |
| Msa1023130 | AT1G19700.1 | 45.221 | 272 | 108 | 6 | 136 | 377 | 161 | 421 | 3.36e-67 | 226 |
| Msa1023130 | AT1G19700.3 | 45.221 | 272 | 108 | 6 | 136 | 377 | 161 | 421 | 3.36e-67 | 226 |
| Msa1023130 | AT1G19700.5 | 45.221 | 272 | 108 | 6 | 136 | 377 | 161 | 421 | 3.36e-67 | 226 |
| Msa1023130 | AT1G19700.4 | 45.221 | 272 | 108 | 6 | 136 | 377 | 161 | 421 | 3.36e-67 | 226 |
| Msa1023130 | AT1G19700.2 | 45.221 | 272 | 108 | 6 | 136 | 377 | 161 | 421 | 3.36e-67 | 226 |
| Msa1023130 | AT1G75410.1 | 46.415 | 265 | 110 | 9 | 135 | 377 | 162 | 416 | 3.42e-66 | 223 |
| Msa1023130 | AT1G75410.2 | 46.415 | 265 | 110 | 9 | 135 | 377 | 162 | 416 | 3.42e-66 | 223 |
| Msa1023130 | AT2G16400.1 | 37.469 | 403 | 206 | 13 | 134 | 518 | 108 | 482 | 3.32e-65 | 219 |
| Msa1023130 | AT4G34610.2 | 46.559 | 247 | 113 | 5 | 144 | 377 | 144 | 384 | 1.30e-60 | 208 |
| Msa1023130 | AT4G34610.4 | 46.559 | 247 | 113 | 5 | 144 | 377 | 144 | 384 | 1.30e-60 | 208 |
| Msa1023130 | AT4G34610.3 | 46.559 | 247 | 113 | 5 | 144 | 377 | 144 | 384 | 1.30e-60 | 208 |
| Msa1023130 | AT4G34610.1 | 46.559 | 247 | 113 | 5 | 144 | 377 | 144 | 384 | 1.30e-60 | 208 |
| Msa1023130 | AT5G41410.1 | 35.506 | 445 | 192 | 18 | 141 | 517 | 194 | 611 | 2.13e-58 | 204 |
| Msa1023130 | AT2G27220.1 | 40.809 | 272 | 132 | 6 | 146 | 408 | 82 | 333 | 2.56e-57 | 197 |
| Msa1023130 | AT2G27220.3 | 40.809 | 272 | 132 | 6 | 146 | 408 | 82 | 333 | 2.56e-57 | 197 |
| Msa1023130 | AT4G36870.2 | 44.706 | 255 | 120 | 8 | 140 | 374 | 312 | 565 | 5.57e-57 | 202 |
| Msa1023130 | AT4G36870.1 | 44.706 | 255 | 120 | 8 | 140 | 374 | 312 | 565 | 5.57e-57 | 202 |
| Msa1023130 | AT2G23760.2 | 42.803 | 264 | 113 | 7 | 140 | 374 | 237 | 491 | 1.35e-55 | 197 |
| Msa1023130 | AT2G23760.1 | 42.803 | 264 | 113 | 7 | 140 | 374 | 237 | 491 | 1.35e-55 | 197 |
| Msa1023130 | AT2G23760.3 | 42.803 | 264 | 113 | 7 | 140 | 374 | 237 | 491 | 1.35e-55 | 197 |
| Msa1023130 | AT2G35940.3 | 44.061 | 261 | 109 | 5 | 141 | 368 | 190 | 446 | 1.27e-54 | 195 |
| Msa1023130 | AT2G35940.1 | 44.061 | 261 | 109 | 5 | 141 | 368 | 190 | 446 | 1.27e-54 | 195 |
| Msa1023130 | AT2G35940.2 | 44.061 | 261 | 109 | 5 | 141 | 368 | 190 | 446 | 1.27e-54 | 195 |
| Msa1023130 | AT2G27220.2 | 39.085 | 284 | 138 | 6 | 146 | 408 | 82 | 351 | 9.45e-54 | 188 |
| Msa1023130 | AT1G75410.3 | 43.802 | 242 | 104 | 9 | 135 | 354 | 162 | 393 | 5.78e-52 | 182 |
| Msa1023130 | AT1G75430.1 | 36.765 | 272 | 145 | 4 | 141 | 389 | 17 | 284 | 4.68e-51 | 176 |
| Msa1023130 | AT2G23760.4 | 32.200 | 441 | 174 | 14 | 140 | 468 | 237 | 664 | 2.12e-46 | 172 |
| Msa1023130 | AT2G27990.2 | 43.204 | 206 | 108 | 4 | 130 | 333 | 252 | 450 | 1.81e-44 | 163 |
| Msa1023130 | AT4G36870.4 | 41.102 | 236 | 118 | 8 | 140 | 355 | 312 | 546 | 3.28e-43 | 161 |
| Msa1023130 | AT4G36870.3 | 40.598 | 234 | 118 | 8 | 140 | 353 | 312 | 544 | 5.82e-42 | 158 |
| Msa1023130 | AT4G32980.1 | 31.023 | 303 | 169 | 8 | 95 | 374 | 154 | 439 | 4.53e-38 | 145 |
| Msa1023130 | AT4G32980.2 | 31.023 | 303 | 169 | 8 | 95 | 374 | 154 | 439 | 4.53e-38 | 145 |
| Msa1023130 | AT1G75430.2 | 29.630 | 216 | 125 | 4 | 141 | 333 | 17 | 228 | 1.18e-23 | 101 |
| Msa1023130 | AT1G62990.1 | 43.478 | 69 | 37 | 1 | 300 | 366 | 207 | 275 | 2.82e-11 | 65.1 |
| Msa1023130 | AT1G23380.1 | 50.909 | 55 | 27 | 0 | 314 | 368 | 253 | 307 | 4.65e-11 | 64.7 |
| Msa1023130 | AT1G23380.2 | 50.909 | 55 | 27 | 0 | 314 | 368 | 255 | 309 | 4.76e-11 | 64.7 |
Find 118 sgRNAs with CRISPR-Local
Find 236 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGATGATCTTATACGTAAAT+TGG | 0.128783 | 7_1:+50452191 | None:intergenic |
| GAAACCTGCACAACAATTAT+TGG | 0.152856 | 7_1:-50451594 | Msa1023130:CDS |
| TCATCTCTCTGTGATTCTTT+TGG | 0.214970 | 7_1:+50448544 | None:intergenic |
| CAATTGCAGAATAGGCAATT+TGG | 0.234987 | 7_1:-50448199 | Msa1023130:CDS |
| AACTACTAACCATGTTTCTT+TGG | 0.259391 | 7_1:-50448108 | Msa1023130:three_prime_UTR |
| CTTCATCAAAATCATGGAAT+TGG | 0.260611 | 7_1:-50448304 | Msa1023130:CDS |
| CGCTGCTCCGTATGCAAGTT+TGG | 0.271943 | 7_1:-50449501 | Msa1023130:CDS |
| TCATAATCACAAGATAAATT+AGG | 0.276291 | 7_1:-50448083 | Msa1023130:three_prime_UTR |
| CTGTTGTTGATCATGTTTCT+AGG | 0.276539 | 7_1:-50451679 | Msa1023130:CDS |
| ATTGAAATTTGATTCTAGTT+TGG | 0.276820 | 7_1:-50448056 | Msa1023130:three_prime_UTR |
| TTGAAATTTGATTCTAGTTT+GGG | 0.301180 | 7_1:-50448055 | Msa1023130:three_prime_UTR |
| AGCGTGCTGTCAGTGTTCTT+AGG | 0.318063 | 7_1:-50449268 | Msa1023130:CDS |
| ACCGACCAGATTCAGTTTAT+CGG | 0.323110 | 7_1:-50449431 | Msa1023130:CDS |
| TCTAGGAACACGGTTCCATT+AGG | 0.325865 | 7_1:-50451662 | Msa1023130:CDS |
| GAAGGTAAAGGTGAATAGTT+AGG | 0.327476 | 7_1:+50451917 | None:intergenic |
| CAGCAGCACTCATCTGATTC+TGG | 0.330179 | 7_1:+50451720 | None:intergenic |
| GTTCCATTAGGGCCATTTAC+AGG | 0.333535 | 7_1:-50451650 | Msa1023130:CDS |
| TCAATCATGAACAGGTTTGC+AGG | 0.342817 | 7_1:-50449595 | Msa1023130:intron |
| ACTTCATTTGAATATGTTGC+TGG | 0.344803 | 7_1:-50449533 | Msa1023130:CDS |
| ACAGAAGCATAACCTGTAAA+TGG | 0.347909 | 7_1:+50451638 | None:intergenic |
| AATTGCAGAATAGGCAATTT+GGG | 0.349127 | 7_1:-50448198 | Msa1023130:CDS |
| AAGATTCAATGAAACTTGTT+TGG | 0.360190 | 7_1:+50451954 | None:intergenic |
| TAAATGCAAGAGTAAGGCTT+TGG | 0.373108 | 7_1:-50448612 | Msa1023130:CDS |
| ATGTGTTACAGGTGTCTAAT+TGG | 0.376653 | 7_1:-50448639 | Msa1023130:intron |
| GCGTGCTGTCAGTGTTCTTA+GGG | 0.378409 | 7_1:-50449267 | Msa1023130:CDS |
| GTTAGTAGTTGCTTAGTTAG+TGG | 0.379746 | 7_1:+50448121 | None:intergenic |
| GATGATAAAGACAAAGATAA+AGG | 0.380053 | 7_1:+50451755 | None:intergenic |
| TAACCTGTAAATGGCCCTAA+TGG | 0.383820 | 7_1:+50451647 | None:intergenic |
| GGTAACAGTGGAATGATTAA+TGG | 0.384759 | 7_1:-50451494 | Msa1023130:CDS |
| TGCCGTTGATGCATCTTTGA+TGG | 0.387842 | 7_1:-50451528 | Msa1023130:CDS |
| GATGATCTTATACGTAAATT+GGG | 0.393261 | 7_1:+50452192 | None:intergenic |
| TTTGAGTTTGATAAAGAAAA+GGG | 0.396823 | 7_1:+50451846 | None:intergenic |
| TTTCTCTTCTACTTTGTTGT+GGG | 0.398367 | 7_1:+50451999 | None:intergenic |
| CCTCTTTGAGGTCGCCAAAC+AGG | 0.409862 | 7_1:+50449299 | None:intergenic |
| TTCATCAAAATCATGGAATT+GGG | 0.411246 | 7_1:-50448303 | Msa1023130:CDS |
| TTTGAATATGTTGCTGGCCT+CGG | 0.413259 | 7_1:-50449527 | Msa1023130:CDS |
| CTAGGAACACGGTTCCATTA+GGG | 0.419262 | 7_1:-50451661 | Msa1023130:CDS |
| GGTTTATAAATGCAAGAGTA+AGG | 0.420041 | 7_1:-50448618 | Msa1023130:CDS |
| TCATCCAATAATTGTTGTGC+AGG | 0.423901 | 7_1:+50451590 | None:intergenic |
| ACTTACCGATAAACTGAATC+TGG | 0.425112 | 7_1:+50449426 | None:intergenic |
| ATTTGAGTTTGATAAAGAAA+AGG | 0.427297 | 7_1:+50451845 | None:intergenic |
| CGCTCAGGGAGCCCTCTTTG+AGG | 0.433129 | 7_1:+50449287 | None:intergenic |
| AGGTGAATAGTTAGGGTTAA+GGG | 0.439612 | 7_1:+50451925 | None:intergenic |
| GATTCTAGTTTGGGATTAAG+TGG | 0.440527 | 7_1:-50448046 | Msa1023130:three_prime_UTR |
| AACACGTCCAACAACCTGTT+TGG | 0.443229 | 7_1:-50449313 | Msa1023130:CDS |
| GCCCCTTACAGTCAATGGCC+GGG | 0.445987 | 7_1:-50449344 | Msa1023130:CDS |
| CTAATGTTGGCTAAACAAAC+TGG | 0.446507 | 7_1:-50448762 | Msa1023130:CDS |
| AAGGTGAATAGTTAGGGTTA+AGG | 0.455170 | 7_1:+50451924 | None:intergenic |
| CTCGGTCTTCATCAAAATCA+TGG | 0.458609 | 7_1:-50448310 | Msa1023130:CDS |
| AACTTGTCTGTGGAGGTAGA+TGG | 0.462590 | 7_1:+50448478 | None:intergenic |
| AACCCCGGCCATTGACTGTA+AGG | 0.466601 | 7_1:+50449341 | None:intergenic |
| AATCAACAAGTTGGTAATGT+TGG | 0.479434 | 7_1:-50448382 | Msa1023130:CDS |
| GTTTAGTACTATGGCTGATG+AGG | 0.481895 | 7_1:-50452044 | Msa1023130:exon |
| AGCCCCTTACAGTCAATGGC+CGG | 0.485718 | 7_1:-50449345 | Msa1023130:CDS |
| AAGGTAAAGGTGAATAGTTA+GGG | 0.487879 | 7_1:+50451918 | None:intergenic |
| AGAACACTGACAGCACGCTC+AGG | 0.494420 | 7_1:+50449272 | None:intergenic |
| ATGGAGCCCCTTACAGTCAA+TGG | 0.496798 | 7_1:-50449349 | Msa1023130:CDS |
| GATAGTGAAATGAAAAGATA+TGG | 0.499077 | 7_1:+50452153 | None:intergenic |
| TTTAGTACTATGGCTGATGA+GGG | 0.503174 | 7_1:-50452043 | Msa1023130:exon |
| TTGCTTGCGATACTATGATT+CGG | 0.508843 | 7_1:+50448403 | None:intergenic |
| TTACTGTTTATAGCATCTAA+AGG | 0.509725 | 7_1:+50451869 | None:intergenic |
| GAGGTCGCCAAACAGGTTGT+TGG | 0.511201 | 7_1:+50449306 | None:intergenic |
| GATGATACACTTGGTGATGA+TGG | 0.511653 | 7_1:-50451464 | Msa1023130:CDS |
| ATGTGTATTTCCTCCACCAT+TGG | 0.525372 | 7_1:+50448586 | None:intergenic |
| CCATCGCCATTGTGAAACCT+TGG | 0.533113 | 7_1:+50449368 | None:intergenic |
| ATTAGCTTGTCAGTATCAGT+AGG | 0.534775 | 7_1:+50448780 | None:intergenic |
| TTATCAGATAAGCAATAGAA+AGG | 0.539123 | 7_1:-50449399 | Msa1023130:CDS |
| ATCGCAAGCAATCAACAAGT+TGG | 0.542496 | 7_1:-50448391 | Msa1023130:CDS |
| CTGTCAGTGTTCTTAGGGGA+TGG | 0.544619 | 7_1:-50449262 | Msa1023130:CDS |
| GGAGTGAGCATGATGAATAA+TGG | 0.547619 | 7_1:-50448361 | Msa1023130:CDS |
| TTATTACTGCATGAATCTGC+TGG | 0.550815 | 7_1:+50449555 | None:intergenic |
| TGCGCGGCACTCATGTTGAA+AGG | 0.555710 | 7_1:+50448271 | None:intergenic |
| CCAAGGTTTCACAATGGCGA+TGG | 0.556719 | 7_1:-50449368 | Msa1023130:CDS |
| AAAGAGAGTGATGGAAGTGA+TGG | 0.560810 | 7_1:+50452117 | None:intergenic |
| AGAAAAGAGAAAGAGAGTGA+TGG | 0.561774 | 7_1:+50452108 | None:intergenic |
| AGTGAAGGATCGTAAAGAGA+AGG | 0.562891 | 7_1:+50451899 | None:intergenic |
| CCCCGGCCATTGACTGTAAG+GGG | 0.567814 | 7_1:+50449343 | None:intergenic |
| GGCACTCATGTTGAAAGGCT+CGG | 0.569858 | 7_1:+50448276 | None:intergenic |
| GGATCGTAAAGAGAAGGTAA+AGG | 0.570346 | 7_1:+50451905 | None:intergenic |
| TTGGATGAGATATGTGATGT+TGG | 0.571767 | 7_1:-50451575 | Msa1023130:CDS |
| TTTATAGCCAAACTTGCATA+CGG | 0.572894 | 7_1:+50449494 | None:intergenic |
| TGATACTGACAAGCTAATGT+TGG | 0.576970 | 7_1:-50448775 | Msa1023130:CDS |
| AACTGGTCTATCTCGTAACC+AGG | 0.577110 | 7_1:-50448745 | Msa1023130:intron |
| TCTTTGATGGAAACTAATCA+TGG | 0.579826 | 7_1:-50451515 | Msa1023130:CDS |
| ACCCCGGCCATTGACTGTAA+GGG | 0.583644 | 7_1:+50449342 | None:intergenic |
| GAACACTGACAGCACGCTCA+GGG | 0.586445 | 7_1:+50449273 | None:intergenic |
| TTCCATCAAAGATGCATCAA+CGG | 0.593348 | 7_1:+50451526 | None:intergenic |
| CTGTTTGGCGACCTCAAAGA+GGG | 0.600827 | 7_1:-50449298 | Msa1023130:CDS |
| GAAACTAATCATGGTAACAG+TGG | 0.611291 | 7_1:-50451506 | Msa1023130:CDS |
| GCTTTGGAAACCAATGGTGG+AGG | 0.613060 | 7_1:-50448596 | Msa1023130:CDS |
| AGTAAGGCTTTGGAAACCAA+TGG | 0.617622 | 7_1:-50448602 | Msa1023130:CDS |
| AATAATGGTGCAACAAGCAA+TGG | 0.619469 | 7_1:-50448346 | Msa1023130:CDS |
| TGAATAGTTAGGGTTAAGGG+TGG | 0.619527 | 7_1:+50451928 | None:intergenic |
| ACCGATAAACTGAATCTGGT+CGG | 0.620017 | 7_1:+50449430 | None:intergenic |
| ATCGATAAACTTGTCTGTGG+AGG | 0.624502 | 7_1:+50448471 | None:intergenic |
| TGATCATGTTTCTAGGAACA+CGG | 0.625288 | 7_1:-50451672 | Msa1023130:CDS |
| CCTGTTTGGCGACCTCAAAG+AGG | 0.626862 | 7_1:-50449299 | Msa1023130:CDS |
| AATGGTGTATCTCTGACGCT+CGG | 0.628944 | 7_1:-50448328 | Msa1023130:CDS |
| ATTGTTAACAGTGCTTGATG+AGG | 0.636658 | 7_1:-50451423 | Msa1023130:intron |
| TCTAAAGGTGAAATGAGTGA+AGG | 0.639475 | 7_1:+50451884 | None:intergenic |
| TGGACGTGTTCTATAAACCC+CGG | 0.639880 | 7_1:+50449326 | None:intergenic |
| ATACACTTGGTGATGATGGA+AGG | 0.640811 | 7_1:-50451460 | Msa1023130:CDS |
| GAATCTAAAATGTTTAGACA+TGG | 0.648388 | 7_1:+50449469 | None:intergenic |
| ATAGAAAGGATGAATCTCCA+AGG | 0.653144 | 7_1:-50449385 | Msa1023130:CDS |
| ATGAATCATGTATACAACGA+TGG | 0.656023 | 7_1:-50451824 | Msa1023130:CDS |
| AAGGCTTTGGAAACCAATGG+TGG | 0.659340 | 7_1:-50448599 | Msa1023130:CDS |
| CATACGGAGCAGCGTTACCG+AGG | 0.661288 | 7_1:+50449510 | None:intergenic |
| CGTGCTGTCAGTGTTCTTAG+GGG | 0.662282 | 7_1:-50449266 | Msa1023130:CDS |
| TTAGCTTGTCAGTATCAGTA+GGG | 0.670053 | 7_1:+50448781 | None:intergenic |
| TGCAAGACCAAAACGCTGCG+CGG | 0.670453 | 7_1:+50448255 | None:intergenic |
| ATTATGAAACCAAAGAAACA+TGG | 0.673561 | 7_1:+50448099 | None:intergenic |
| GAATAGTTAGGGTTAAGGGT+GGG | 0.680467 | 7_1:+50451929 | None:intergenic |
| CTGCAATTGAAAACCACTCG+CGG | 0.686077 | 7_1:+50448213 | None:intergenic |
| AATCATGTATACAACGATGG+TGG | 0.691205 | 7_1:-50451821 | Msa1023130:CDS |
| ATCATGAACAGGTTTGCAGG+AGG | 0.698719 | 7_1:-50449592 | Msa1023130:intron |
| GGTGTTGATGATGATACACT+TGG | 0.700349 | 7_1:-50451473 | Msa1023130:CDS |
| AACATCGATAAACTTGTCTG+TGG | 0.700915 | 7_1:+50448468 | None:intergenic |
| GAATCTCCAAGGTTTCACAA+TGG | 0.730768 | 7_1:-50449374 | Msa1023130:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACAAAAATCAATAATAAATA+GGG | + | chr7_1:50448120-50448139 | None:intergenic | 10.0% |
| !! | AACAAAAATCAATAATAAAT+AGG | + | chr7_1:50448121-50448140 | None:intergenic | 10.0% |
| !! | AGAAAAAACAATATAATAAT+TGG | - | chr7_1:50448932-50448951 | Msa1023130:intron | 10.0% |
| !!! | AATCATTTTTTTAATCAATT+CGG | - | chr7_1:50449159-50449178 | Msa1023130:intron | 10.0% |
| !! | CAAAAAAAAAAAAAAAACAA+TGG | - | chr7_1:50449677-50449696 | Msa1023130:intron | 10.0% |
| !! | ATGTTAAAAAAAAAAAACAA+TGG | - | chr7_1:50449735-50449754 | Msa1023130:intron | 10.0% |
| !! | CTCTCAAAAAAAAAATTATA+TGG | + | chr7_1:50449044-50449063 | None:intergenic | 15.0% |
| !!! | GTTTATATAAGTATTGTTTT+AGG | + | chr7_1:50449260-50449279 | None:intergenic | 15.0% |
| !! | AATGAAATTAAAAACATTGT+CGG | - | chr7_1:50449486-50449505 | Msa1023130:CDS | 15.0% |
| !! | AAAAAACATTAAAACTCATT+TGG | - | chr7_1:50449586-50449605 | Msa1023130:intron | 15.0% |
| !! | TCACTTTAATAAAATACAAA+TGG | + | chr7_1:50449952-50449971 | None:intergenic | 15.0% |
| !!! | ATTTTATTAAAGTGATTGAT+TGG | - | chr7_1:50449957-50449976 | Msa1023130:intron | 15.0% |
| !!! | CAAAAAAACTTTTTTTTTGA+AGG | + | chr7_1:50450088-50450107 | None:intergenic | 15.0% |
| !!! | TTTGAGTTTGATAAAGAAAA+GGG | + | chr7_1:50448348-50448367 | None:intergenic | 20.0% |
| !!! | ATTTGAGTTTGATAAAGAAA+AGG | + | chr7_1:50448349-50448368 | None:intergenic | 20.0% |
| !! | TATGTATGTATGTATGAATA+GGG | + | chr7_1:50448961-50448980 | None:intergenic | 20.0% |
| !!! | AGCATAATCCATATAATTTT+TGG | - | chr7_1:50449062-50449081 | Msa1023130:intron | 20.0% |
| !! | TAGCATAACCAAAAATTATA+TGG | + | chr7_1:50449073-50449092 | None:intergenic | 20.0% |
| !!! | TAGTGTTTTTTTTTATGTTG+CGG | + | chr7_1:50449222-50449241 | None:intergenic | 20.0% |
| !! | AGACAAAAAGTAATCATATT+AGG | + | chr7_1:50449415-50449434 | None:intergenic | 20.0% |
| !!! | TAAATCAAAACACACTTTTT+TGG | + | chr7_1:50450011-50450030 | None:intergenic | 20.0% |
| !! | TGAAACAATATATATTCTAC+CGG | + | chr7_1:50450373-50450392 | None:intergenic | 20.0% |
| !! | AAGGGTTTAAAAAGAATATA+TGG | + | chr7_1:50451123-50451142 | None:intergenic | 20.0% |
| !! | AGAAAAAGTTGAAATAACAA+CGG | - | chr7_1:50451208-50451227 | Msa1023130:intron | 20.0% |
| !! | TTAATCATGAAAAATTTACC+TGG | + | chr7_1:50451467-50451486 | None:intergenic | 20.0% |
| !! | TCATAATCACAAGATAAATT+AGG | - | chr7_1:50452108-50452127 | Msa1023130:five_prime_UTR | 20.0% |
| !!! | ATTGAAATTTGATTCTAGTT+TGG | - | chr7_1:50452135-50452154 | Msa1023130:five_prime_UTR | 20.0% |
| !!! | TTGAAATTTGATTCTAGTTT+GGG | - | chr7_1:50452136-50452155 | Msa1023130:five_prime_UTR | 20.0% |
| !!! | CATTATTTTTATCTTAGTAG+TGG | - | chr7_1:50452175-50452194 | Msa1023130:five_prime_UTR | 20.0% |
| ! | GATAGTGAAATGAAAAGATA+TGG | + | chr7_1:50448041-50448060 | None:intergenic | 25.0% |
| !!! | GTTTTGTTTGTTTAGTACTA+TGG | - | chr7_1:50448138-50448157 | Msa1023130:exon | 25.0% |
| !! | AAGATTCAATGAAACTTGTT+TGG | + | chr7_1:50448240-50448259 | None:intergenic | 25.0% |
| ! | TTACTGTTTATAGCATCTAA+AGG | + | chr7_1:50448325-50448344 | None:intergenic | 25.0% |
| ! | GATGATAAAGACAAAGATAA+AGG | + | chr7_1:50448439-50448458 | None:intergenic | 25.0% |
| ! | GTATGTATGTATGTATGAAT+AGG | + | chr7_1:50448962-50448981 | None:intergenic | 25.0% |
| ! | CATACATACATACATACATA+CGG | - | chr7_1:50448965-50448984 | Msa1023130:intron | 25.0% |
| ! | ATACATACATACATACATAC+GGG | - | chr7_1:50448966-50448985 | Msa1023130:intron | 25.0% |
| !!! | TTGGTTATGCTATTTTTTCA+TGG | - | chr7_1:50449081-50449100 | Msa1023130:intron | 25.0% |
| !!! | TATGCTATTTTTTCATGGTT+CGG | - | chr7_1:50449086-50449105 | Msa1023130:intron | 25.0% |
| !!! | CAAATCAATACGGTTTTTTA+CGG | + | chr7_1:50449129-50449148 | None:intergenic | 25.0% |
| ! | CGAATAGATTCAAATCAATA+CGG | + | chr7_1:50449139-50449158 | None:intergenic | 25.0% |
| ! | GTTGTATTTATGTGACTATA+TGG | - | chr7_1:50449791-50449810 | Msa1023130:intron | 25.0% |
| ! | AAACTTATCCCATAGTATAT+CGG | + | chr7_1:50449830-50449849 | None:intergenic | 25.0% |
| ! | CTCATCAATACTTTACAAAA+AGG | + | chr7_1:50449867-50449886 | None:intergenic | 25.0% |
| !!! | TTTGTAAAGTATTGATGAGA+AGG | - | chr7_1:50449868-50449887 | Msa1023130:intron | 25.0% |
| !! | TGGTATAAAATCTTTGCTAT+GGG | + | chr7_1:50449932-50449951 | None:intergenic | 25.0% |
| ! | ATGGTATAAAATCTTTGCTA+TGG | + | chr7_1:50449933-50449952 | None:intergenic | 25.0% |
| ! | TATTAAAGTGATTGATTGGT+AGG | - | chr7_1:50449961-50449980 | Msa1023130:intron | 25.0% |
| !!! | GTTTTTTTGCCTAAAAAGAT+TGG | - | chr7_1:50450099-50450118 | Msa1023130:intron | 25.0% |
| !! | TTTCAGAAACCAATCTTTTT+AGG | + | chr7_1:50450111-50450130 | None:intergenic | 25.0% |
| !!! | AAGATTGGTTTCTGAAATTT+TGG | - | chr7_1:50450114-50450133 | Msa1023130:intron | 25.0% |
| ! | ATAGAATCAGAATATGCAAA+TGG | - | chr7_1:50450172-50450191 | Msa1023130:intron | 25.0% |
| ! | AATGTCCAATCTCAAAATAT+CGG | - | chr7_1:50450233-50450252 | Msa1023130:intron | 25.0% |
| !!! | TATTTTGAGATCTTACGAAT+CGG | + | chr7_1:50450296-50450315 | None:intergenic | 25.0% |
| ! | TTGTTTCACTGTAATTTATC+CGG | - | chr7_1:50450385-50450404 | Msa1023130:intron | 25.0% |
| ! | AATTTCATCTTGCATCAAAT+TGG | + | chr7_1:50450423-50450442 | None:intergenic | 25.0% |
| ! | AATTTGATGCAAGATGAAAT+TGG | - | chr7_1:50450422-50450441 | Msa1023130:intron | 25.0% |
| !! | GAATCTAAAATGTTTAGACA+TGG | + | chr7_1:50450725-50450744 | None:intergenic | 25.0% |
| ! | TTATCAGATAAGCAATAGAA+AGG | - | chr7_1:50450792-50450811 | Msa1023130:intron | 25.0% |
| ! | AGATTGAAATAACACACTTA+CGG | + | chr7_1:50450976-50450995 | None:intergenic | 25.0% |
| !!! | TTTTTTAGAAATCACAGTTG+AGG | - | chr7_1:50451058-50451077 | Msa1023130:intron | 25.0% |
| ! | TATAGATGATCATAGAAGAA+GGG | + | chr7_1:50451189-50451208 | None:intergenic | 25.0% |
| ! | GAAAAAGTTGAAATAACAAC+GGG | - | chr7_1:50451209-50451228 | Msa1023130:intron | 25.0% |
| ! | ATATATATAGTGACCGAATT+TGG | + | chr7_1:50451242-50451261 | None:intergenic | 25.0% |
| ! | TCTAAACACGTCTTATAAAA+TGG | + | chr7_1:50451359-50451378 | None:intergenic | 25.0% |
| ! | TTCATCAAAATCATGGAATT+GGG | - | chr7_1:50451888-50451907 | Msa1023130:CDS | 25.0% |
| ! | ATTATGAAACCAAAGAAACA+TGG | + | chr7_1:50452095-50452114 | None:intergenic | 25.0% |
| ! | TTTCTCTTCTACTTTGTTGT+GGG | + | chr7_1:50448195-50448214 | None:intergenic | 30.0% |
| ! | TTTTCTCTTCTACTTTGTTG+TGG | + | chr7_1:50448196-50448215 | None:intergenic | 30.0% |
| AAGGTAAAGGTGAATAGTTA+GGG | + | chr7_1:50448276-50448295 | None:intergenic | 30.0% | |
| ATGAATCATGTATACAACGA+TGG | - | chr7_1:50448367-50448386 | Msa1023130:CDS | 30.0% | |
| TCTTTGATGGAAACTAATCA+TGG | - | chr7_1:50448676-50448695 | Msa1023130:intron | 30.0% | |
| !!! | ATGCTATTTTTTCATGGTTC+GGG | - | chr7_1:50449087-50449106 | Msa1023130:intron | 30.0% |
| !!! | AATACGGTTTTTTACGGTTT+TGG | + | chr7_1:50449123-50449142 | None:intergenic | 30.0% |
| ! | TCATTCTCTAAAAGTTCAAG+TGG | + | chr7_1:50449365-50449384 | None:intergenic | 30.0% |
| TAGATAACTCCATTGAACTA+AGG | + | chr7_1:50449616-50449635 | None:intergenic | 30.0% | |
| TTCAATGGAGTTATCTACTT+GGG | - | chr7_1:50449619-50449638 | Msa1023130:intron | 30.0% | |
| GGACATGACATTAATAACAA+TGG | - | chr7_1:50449640-50449659 | Msa1023130:intron | 30.0% | |
| ! | CTCTTTTTGTGGATAGATTT+TGG | - | chr7_1:50449763-50449782 | Msa1023130:intron | 30.0% |
| ! | ACTTTTTACCCGATATACTA+TGG | - | chr7_1:50449818-50449837 | Msa1023130:intron | 30.0% |
| ! | CTTTTTACCCGATATACTAT+GGG | - | chr7_1:50449819-50449838 | Msa1023130:intron | 30.0% |
| AACTTATCCCATAGTATATC+GGG | + | chr7_1:50449829-50449848 | None:intergenic | 30.0% | |
| AAGGAATATATGCTGAAGAA+TGG | - | chr7_1:50449887-50449906 | Msa1023130:intron | 30.0% | |
| AGGAATATATGCTGAAGAAT+GGG | - | chr7_1:50449888-50449907 | Msa1023130:intron | 30.0% | |
| ! | GGAGCAAAAATCTTTTCTAA+AGG | + | chr7_1:50449990-50450009 | None:intergenic | 30.0% |
| GATTTATTCATCTTGCTCAA+AGG | - | chr7_1:50450025-50450044 | Msa1023130:intron | 30.0% | |
| TTCTGATTCTATCACTACTT+TGG | + | chr7_1:50450164-50450183 | None:intergenic | 30.0% | |
| AATATATATTCTACCGGATC+CGG | + | chr7_1:50450367-50450386 | None:intergenic | 30.0% | |
| AAATTGGTCATAGTTATTGC+CGG | + | chr7_1:50450407-50450426 | None:intergenic | 30.0% | |
| ATTGATACTGTGTAGTTTGA+GGG | - | chr7_1:50450452-50450471 | Msa1023130:intron | 30.0% | |
| TTGATTTCTTGATGTAGAAG+TGG | - | chr7_1:50450524-50450543 | Msa1023130:intron | 30.0% | |
| ACTTCATTTGAATATGTTGC+TGG | - | chr7_1:50450658-50450677 | Msa1023130:intron | 30.0% | |
| TTTATAGCCAAACTTGCATA+CGG | + | chr7_1:50450700-50450719 | None:intergenic | 30.0% | |
| CTATAGATGATCATAGAAGA+AGG | + | chr7_1:50451190-50451209 | None:intergenic | 30.0% | |
| ! | TTTTTCCGTCTATCTATTTC+AGG | - | chr7_1:50451298-50451317 | Msa1023130:intron | 30.0% |
| AAAAGCCTGAAATAGATAGA+CGG | + | chr7_1:50451306-50451325 | None:intergenic | 30.0% | |
| TTCTAGTAGTGACATGTATA+TGG | - | chr7_1:50451324-50451343 | Msa1023130:intron | 30.0% | |
| AACACGTCTTATAAAATGGT+TGG | + | chr7_1:50451355-50451374 | None:intergenic | 30.0% | |
| GGTTTATAAATGCAAGAGTA+AGG | - | chr7_1:50451573-50451592 | Msa1023130:CDS | 30.0% | |
| !! | AATCAACAAGTTGGTAATGT+TGG | - | chr7_1:50451809-50451828 | Msa1023130:CDS | 30.0% |
| CTTCATCAAAATCATGGAAT+TGG | - | chr7_1:50451887-50451906 | Msa1023130:CDS | 30.0% | |
| AATTGCAGAATAGGCAATTT+GGG | - | chr7_1:50451993-50452012 | Msa1023130:CDS | 30.0% | |
| ! | CAATTTGGGAGAGATTTTAT+TGG | - | chr7_1:50452007-50452026 | Msa1023130:CDS | 30.0% |
| AACTACTAACCATGTTTCTT+TGG | - | chr7_1:50452083-50452102 | Msa1023130:five_prime_UTR | 30.0% | |
| AGAAAAGAGAAAGAGAGTGA+TGG | + | chr7_1:50448086-50448105 | None:intergenic | 35.0% | |
| TTTAGTACTATGGCTGATGA+GGG | - | chr7_1:50448148-50448167 | Msa1023130:exon | 35.0% | |
| AGGTGAATAGTTAGGGTTAA+GGG | + | chr7_1:50448269-50448288 | None:intergenic | 35.0% | |
| AAGGTGAATAGTTAGGGTTA+AGG | + | chr7_1:50448270-50448289 | None:intergenic | 35.0% | |
| GAAGGTAAAGGTGAATAGTT+AGG | + | chr7_1:50448277-50448296 | None:intergenic | 35.0% | |
| TCTAAAGGTGAAATGAGTGA+AGG | + | chr7_1:50448310-50448329 | None:intergenic | 35.0% | |
| AATCATGTATACAACGATGG+TGG | - | chr7_1:50448370-50448389 | Msa1023130:CDS | 35.0% | |
| CTGTTGTTGATCATGTTTCT+AGG | - | chr7_1:50448512-50448531 | Msa1023130:CDS | 35.0% | |
| !! | TGATCATGTTTCTAGGAACA+CGG | - | chr7_1:50448519-50448538 | Msa1023130:CDS | 35.0% |
| ! | ACAGAAGCATAACCTGTAAA+TGG | + | chr7_1:50448556-50448575 | None:intergenic | 35.0% |
| !! | AGGTTATGCTTCTGTTTTGA+AGG | - | chr7_1:50448561-50448580 | Msa1023130:CDS | 35.0% |
| !! | GGTTATGCTTCTGTTTTGAA+GGG | - | chr7_1:50448562-50448581 | Msa1023130:CDS | 35.0% |
| GAAACCTGCACAACAATTAT+TGG | - | chr7_1:50448597-50448616 | Msa1023130:CDS | 35.0% | |
| TCATCCAATAATTGTTGTGC+AGG | + | chr7_1:50448604-50448623 | None:intergenic | 35.0% | |
| TTGGATGAGATATGTGATGT+TGG | - | chr7_1:50448616-50448635 | Msa1023130:CDS | 35.0% | |
| TTCCATCAAAGATGCATCAA+CGG | + | chr7_1:50448668-50448687 | None:intergenic | 35.0% | |
| GAAACTAATCATGGTAACAG+TGG | - | chr7_1:50448685-50448704 | Msa1023130:intron | 35.0% | |
| GGTAACAGTGGAATGATTAA+TGG | - | chr7_1:50448697-50448716 | Msa1023130:intron | 35.0% | |
| ATTGTTAACAGTGCTTGATG+AGG | - | chr7_1:50448768-50448787 | Msa1023130:CDS | 35.0% | |
| ACAATAGTGAGACATCGTAT+TGG | - | chr7_1:50448871-50448890 | Msa1023130:intron | 35.0% | |
| AACATTGTCGGAAACATTGT+TGG | - | chr7_1:50449498-50449517 | Msa1023130:CDS | 35.0% | |
| !! | TTTGGTGTTCCTTAGTTCAA+TGG | - | chr7_1:50449604-50449623 | Msa1023130:intron | 35.0% |
| GTTCAATGGAGTTATCTACT+TGG | - | chr7_1:50449618-50449637 | Msa1023130:intron | 35.0% | |
| ! | CAATGGTTGTACTCTTTTTG+TGG | - | chr7_1:50449752-50449771 | Msa1023130:intron | 35.0% |
| TCCAATCTCAAAATATCGGT+CGG | - | chr7_1:50450237-50450256 | Msa1023130:intron | 35.0% | |
| CTCAAACTACACAGTATCAA+TGG | + | chr7_1:50450453-50450472 | None:intergenic | 35.0% | |
| CATTGATACTGTGTAGTTTG+AGG | - | chr7_1:50450451-50450470 | Msa1023130:intron | 35.0% | |
| !! | AAGTGCAGCTTTAGATCTTT+AGG | - | chr7_1:50450493-50450512 | Msa1023130:intron | 35.0% |
| CTTCTTTGTCAATCATGAAC+AGG | - | chr7_1:50450588-50450607 | Msa1023130:intron | 35.0% | |
| TTATTACTGCATGAATCTGC+TGG | + | chr7_1:50450639-50450658 | None:intergenic | 35.0% | |
| ACTTACCGATAAACTGAATC+TGG | + | chr7_1:50450768-50450787 | None:intergenic | 35.0% | |
| ATAGAAAGGATGAATCTCCA+AGG | - | chr7_1:50450806-50450825 | Msa1023130:intron | 35.0% | |
| TTCAGCTGTGATATACACAT+TGG | - | chr7_1:50451157-50451176 | Msa1023130:intron | 35.0% | |
| TCAGCTGTGATATACACATT+GGG | - | chr7_1:50451158-50451177 | Msa1023130:intron | 35.0% | |
| CTTAGCGACAGAAATTATAG+AGG | - | chr7_1:50451264-50451283 | Msa1023130:intron | 35.0% | |
| !! | TTAGCTTGTCAGTATCAGTA+GGG | + | chr7_1:50451413-50451432 | None:intergenic | 35.0% |
| !! | ATTAGCTTGTCAGTATCAGT+AGG | + | chr7_1:50451414-50451433 | None:intergenic | 35.0% |
| TGATACTGACAAGCTAATGT+TGG | - | chr7_1:50451416-50451435 | Msa1023130:intron | 35.0% | |
| ! | CTAATGTTGGCTAAACAAAC+TGG | - | chr7_1:50451429-50451448 | Msa1023130:CDS | 35.0% |
| TCTGTTTCATTTCATGCTTG+AGG | - | chr7_1:50451497-50451516 | Msa1023130:CDS | 35.0% | |
| CTGTTTCATTTCATGCTTGA+GGG | - | chr7_1:50451498-50451517 | Msa1023130:CDS | 35.0% | |
| TGACTATGTCTATGTGTTAC+AGG | - | chr7_1:50451541-50451560 | Msa1023130:CDS | 35.0% | |
| ATGTGTTACAGGTGTCTAAT+TGG | - | chr7_1:50451552-50451571 | Msa1023130:CDS | 35.0% | |
| TAAATGCAAGAGTAAGGCTT+TGG | - | chr7_1:50451579-50451598 | Msa1023130:CDS | 35.0% | |
| ! | TCATCTCTCTGTGATTCTTT+TGG | + | chr7_1:50451650-50451669 | None:intergenic | 35.0% |
| AACATCGATAAACTTGTCTG+TGG | + | chr7_1:50451726-50451745 | None:intergenic | 35.0% | |
| TTGCTTGCGATACTATGATT+CGG | + | chr7_1:50451791-50451810 | None:intergenic | 35.0% | |
| AATAATGGTGCAACAAGCAA+TGG | - | chr7_1:50451845-50451864 | Msa1023130:CDS | 35.0% | |
| ! | GTGGTTTTCAATTGCAGAAT+AGG | - | chr7_1:50451984-50452003 | Msa1023130:CDS | 35.0% |
| CAATTGCAGAATAGGCAATT+TGG | - | chr7_1:50451992-50452011 | Msa1023130:CDS | 35.0% | |
| ! | TTTGGGAGAGATTTTATTGG+TGG | - | chr7_1:50452010-50452029 | Msa1023130:CDS | 35.0% |
| ! | TTGGGAGAGATTTTATTGGT+GGG | - | chr7_1:50452011-50452030 | Msa1023130:CDS | 35.0% |
| GTTAGTAGTTGCTTAGTTAG+TGG | + | chr7_1:50452073-50452092 | None:intergenic | 35.0% | |
| !! | GATTCTAGTTTGGGATTAAG+TGG | - | chr7_1:50452145-50452164 | Msa1023130:five_prime_UTR | 35.0% |
| ! | AAAGAGAGTGATGGAAGTGA+TGG | + | chr7_1:50448077-50448096 | None:intergenic | 40.0% |
| GTTTAGTACTATGGCTGATG+AGG | - | chr7_1:50448147-50448166 | Msa1023130:exon | 40.0% | |
| GAATAGTTAGGGTTAAGGGT+GGG | + | chr7_1:50448265-50448284 | None:intergenic | 40.0% | |
| TGAATAGTTAGGGTTAAGGG+TGG | + | chr7_1:50448266-50448285 | None:intergenic | 40.0% | |
| GGATCGTAAAGAGAAGGTAA+AGG | + | chr7_1:50448289-50448308 | None:intergenic | 40.0% | |
| AGTGAAGGATCGTAAAGAGA+AGG | + | chr7_1:50448295-50448314 | None:intergenic | 40.0% | |
| TAACCTGTAAATGGCCCTAA+TGG | + | chr7_1:50448547-50448566 | None:intergenic | 40.0% | |
| !! | GGTGTTGATGATGATACACT+TGG | - | chr7_1:50448718-50448737 | Msa1023130:intron | 40.0% |
| !! | GATGATACACTTGGTGATGA+TGG | - | chr7_1:50448727-50448746 | Msa1023130:intron | 40.0% |
| !! | ATACACTTGGTGATGATGGA+AGG | - | chr7_1:50448731-50448750 | Msa1023130:intron | 40.0% |
| ! | AGTGAGACATCGTATTGGTA+TGG | - | chr7_1:50448876-50448895 | Msa1023130:intron | 40.0% |
| CATTAGAGATTGAAACTGCG+TGG | + | chr7_1:50450217-50450236 | None:intergenic | 40.0% | |
| !!! | ACCGACCGATATTTTGAGAT+TGG | + | chr7_1:50450241-50450260 | None:intergenic | 40.0% |
| TCTTGATGTAGAAGTGGAAG+TGG | - | chr7_1:50450530-50450549 | Msa1023130:intron | 40.0% | |
| TCAATCATGAACAGGTTTGC+AGG | - | chr7_1:50450596-50450615 | Msa1023130:intron | 40.0% | |
| ! | TTTGAATATGTTGCTGGCCT+CGG | - | chr7_1:50450664-50450683 | Msa1023130:intron | 40.0% |
| ACCGACCAGATTCAGTTTAT+CGG | - | chr7_1:50450760-50450779 | Msa1023130:intron | 40.0% | |
| ACCGATAAACTGAATCTGGT+CGG | + | chr7_1:50450764-50450783 | None:intergenic | 40.0% | |
| GAATCTCCAAGGTTTCACAA+TGG | - | chr7_1:50450817-50450836 | Msa1023130:intron | 40.0% | |
| ! | AACGGGTTCGTAACCAAATT+CGG | - | chr7_1:50451226-50451245 | Msa1023130:intron | 40.0% |
| !! | AGTAAGGCTTTGGAAACCAA+TGG | - | chr7_1:50451589-50451608 | Msa1023130:CDS | 40.0% |
| ATGTGTATTTCCTCCACCAT+TGG | + | chr7_1:50451608-50451627 | None:intergenic | 40.0% | |
| ATCGATAAACTTGTCTGTGG+AGG | + | chr7_1:50451723-50451742 | None:intergenic | 40.0% | |
| ATCGCAAGCAATCAACAAGT+TGG | - | chr7_1:50451800-50451819 | Msa1023130:CDS | 40.0% | |
| GGAGTGAGCATGATGAATAA+TGG | - | chr7_1:50451830-50451849 | Msa1023130:CDS | 40.0% | |
| CTCGGTCTTCATCAAAATCA+TGG | - | chr7_1:50451881-50451900 | Msa1023130:CDS | 40.0% | |
| ! | CAACTTTTGCGTGACTATGT+AGG | - | chr7_1:50452034-50452053 | Msa1023130:CDS | 40.0% |
| !!! | GCTGCTGATTTTCAGCGTTA+TGG | - | chr7_1:50448487-50448506 | Msa1023130:CDS | 45.0% |
| TCTAGGAACACGGTTCCATT+AGG | - | chr7_1:50448529-50448548 | Msa1023130:CDS | 45.0% | |
| CTAGGAACACGGTTCCATTA+GGG | - | chr7_1:50448530-50448549 | Msa1023130:CDS | 45.0% | |
| GTTCCATTAGGGCCATTTAC+AGG | - | chr7_1:50448541-50448560 | Msa1023130:CDS | 45.0% | |
| !!! | CTTCTGTTTTGAAGGGATCG+AGG | - | chr7_1:50448569-50448588 | Msa1023130:CDS | 45.0% |
| TGCCGTTGATGCATCTTTGA+TGG | - | chr7_1:50448663-50448682 | Msa1023130:intron | 45.0% | |
| !! | CATACATACGGGTGTTGATG+TGG | - | chr7_1:50448977-50448996 | Msa1023130:intron | 45.0% |
| ! | TGCAAATGCGTGCTACTCTT+GGG | - | chr7_1:50450338-50450357 | Msa1023130:intron | 45.0% |
| ATCATGAACAGGTTTGCAGG+AGG | - | chr7_1:50450599-50450618 | Msa1023130:intron | 45.0% | |
| TGGACGTGTTCTATAAACCC+CGG | + | chr7_1:50450868-50450887 | None:intergenic | 45.0% | |
| AACACGTCCAACAACCTGTT+TGG | - | chr7_1:50450878-50450897 | Msa1023130:intron | 45.0% | |
| TGAAGCGCGACTTGATAGAA+GGG | + | chr7_1:50451141-50451160 | None:intergenic | 45.0% | |
| ! | AACTGGTCTATCTCGTAACC+AGG | - | chr7_1:50451446-50451465 | Msa1023130:CDS | 45.0% |
| !! | AAGGCTTTGGAAACCAATGG+TGG | - | chr7_1:50451592-50451611 | Msa1023130:CDS | 45.0% |
| AACTTGTCTGTGGAGGTAGA+TGG | + | chr7_1:50451716-50451735 | None:intergenic | 45.0% | |
| AATGGTGTATCTCTGACGCT+CGG | - | chr7_1:50451863-50451882 | Msa1023130:CDS | 45.0% | |
| CTGCAATTGAAAACCACTCG+CGG | + | chr7_1:50451981-50452000 | None:intergenic | 45.0% | |
| CAGCAGCACTCATCTGATTC+TGG | + | chr7_1:50448474-50448493 | None:intergenic | 50.0% | |
| ! | GTGCAAATGCGTGCTACTCT+TGG | - | chr7_1:50450337-50450356 | Msa1023130:intron | 50.0% |
| TACTCTTGGGAATCCGGATC+CGG | - | chr7_1:50450351-50450370 | Msa1023130:intron | 50.0% | |
| CCATCGCCATTGTGAAACCT+TGG | + | chr7_1:50450826-50450845 | None:intergenic | 50.0% | |
| CCAAGGTTTCACAATGGCGA+TGG | - | chr7_1:50450823-50450842 | Msa1023130:intron | 50.0% | |
| ATGGAGCCCCTTACAGTCAA+TGG | - | chr7_1:50450842-50450861 | Msa1023130:intron | 50.0% | |
| CTGTTTGGCGACCTCAAAGA+GGG | - | chr7_1:50450893-50450912 | Msa1023130:intron | 50.0% | |
| AGCGTGCTGTCAGTGTTCTT+AGG | - | chr7_1:50450923-50450942 | Msa1023130:intron | 50.0% | |
| GCGTGCTGTCAGTGTTCTTA+GGG | - | chr7_1:50450924-50450943 | Msa1023130:intron | 50.0% | |
| CGTGCTGTCAGTGTTCTTAG+GGG | - | chr7_1:50450925-50450944 | Msa1023130:intron | 50.0% | |
| CTGTCAGTGTTCTTAGGGGA+TGG | - | chr7_1:50450929-50450948 | Msa1023130:intron | 50.0% | |
| CTGAAGCGCGACTTGATAGA+AGG | + | chr7_1:50451142-50451161 | None:intergenic | 50.0% | |
| !! | GCTTTGGAAACCAATGGTGG+AGG | - | chr7_1:50451595-50451614 | Msa1023130:CDS | 50.0% |
| GGCACTCATGTTGAAAGGCT+CGG | + | chr7_1:50451918-50451937 | None:intergenic | 50.0% | |
| ! | GCGTGCTACTCTTGGGAATC+CGG | - | chr7_1:50450345-50450364 | Msa1023130:intron | 55.0% |
| CGCTGCTCCGTATGCAAGTT+TGG | - | chr7_1:50450690-50450709 | Msa1023130:intron | 55.0% | |
| AGCCCCTTACAGTCAATGGC+CGG | - | chr7_1:50450846-50450865 | Msa1023130:intron | 55.0% | |
| ! | ACCCCGGCCATTGACTGTAA+GGG | + | chr7_1:50450852-50450871 | None:intergenic | 55.0% |
| ! | AACCCCGGCCATTGACTGTA+AGG | + | chr7_1:50450853-50450872 | None:intergenic | 55.0% |
| GAGGTCGCCAAACAGGTTGT+TGG | + | chr7_1:50450888-50450907 | None:intergenic | 55.0% | |
| !! | CCTCTTTGAGGTCGCCAAAC+AGG | + | chr7_1:50450895-50450914 | None:intergenic | 55.0% |
| CCTGTTTGGCGACCTCAAAG+AGG | - | chr7_1:50450892-50450911 | Msa1023130:intron | 55.0% | |
| GAACACTGACAGCACGCTCA+GGG | + | chr7_1:50450921-50450940 | None:intergenic | 55.0% | |
| AGAACACTGACAGCACGCTC+AGG | + | chr7_1:50450922-50450941 | None:intergenic | 55.0% | |
| TGCGCGGCACTCATGTTGAA+AGG | + | chr7_1:50451923-50451942 | None:intergenic | 55.0% | |
| TGCAAGACCAAAACGCTGCG+CGG | + | chr7_1:50451939-50451958 | None:intergenic | 55.0% | |
| CATACGGAGCAGCGTTACCG+AGG | + | chr7_1:50450684-50450703 | None:intergenic | 60.0% | |
| GCCCCTTACAGTCAATGGCC+GGG | - | chr7_1:50450847-50450866 | Msa1023130:intron | 60.0% | |
| ! | CCCCGGCCATTGACTGTAAG+GGG | + | chr7_1:50450851-50450870 | None:intergenic | 60.0% |
| CCCCTTACAGTCAATGGCCG+GGG | - | chr7_1:50450848-50450867 | Msa1023130:intron | 60.0% | |
| !! | ATGAGTGCCGCGCAGCGTTT+TGG | - | chr7_1:50451929-50451948 | Msa1023130:CDS | 60.0% |
| CCACTCGCGGCGTAACTATC+AGG | + | chr7_1:50451968-50451987 | None:intergenic | 60.0% | |
| CCTGATAGTTACGCCGCGAG+TGG | - | chr7_1:50451965-50451984 | Msa1023130:CDS | 60.0% | |
| CGCTCAGGGAGCCCTCTTTG+AGG | + | chr7_1:50450907-50450926 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_1 | gene | 50448001 | 50452212 | 50448001 | ID=Msa1023130;Name=Msa1023130 |
| chr7_1 | mRNA | 50448001 | 50452212 | 50448001 | ID=Msa1023130-mRNA-1;Parent=Msa1023130;Name=Msa1023130-mRNA-1;_AED=0.05;_eAED=0.05;_QI=156|1|1|1|1|1|4|152|518 |
| chr7_1 | exon | 50448001 | 50448650 | 50448001 | ID=Msa1023130-mRNA-1:exon:9895;Parent=Msa1023130-mRNA-1 |
| chr7_1 | exon | 50448746 | 50448806 | 50448746 | ID=Msa1023130-mRNA-1:exon:9894;Parent=Msa1023130-mRNA-1 |
| chr7_1 | exon | 50449239 | 50449603 | 50449239 | ID=Msa1023130-mRNA-1:exon:9893;Parent=Msa1023130-mRNA-1 |
| chr7_1 | exon | 50451424 | 50452212 | 50451424 | ID=Msa1023130-mRNA-1:exon:9892;Parent=Msa1023130-mRNA-1 |
| chr7_1 | five_prime_UTR | 50452057 | 50452212 | 50452057 | ID=Msa1023130-mRNA-1:five_prime_utr;Parent=Msa1023130-mRNA-1 |
| chr7_1 | CDS | 50451424 | 50452056 | 50451424 | ID=Msa1023130-mRNA-1:cds;Parent=Msa1023130-mRNA-1 |
| chr7_1 | CDS | 50449239 | 50449603 | 50449239 | ID=Msa1023130-mRNA-1:cds;Parent=Msa1023130-mRNA-1 |
| chr7_1 | CDS | 50448746 | 50448806 | 50448746 | ID=Msa1023130-mRNA-1:cds;Parent=Msa1023130-mRNA-1 |
| chr7_1 | CDS | 50448153 | 50448650 | 50448153 | ID=Msa1023130-mRNA-1:cds;Parent=Msa1023130-mRNA-1 |
| chr7_1 | three_prime_UTR | 50448001 | 50448152 | 50448001 | ID=Msa1023130-mRNA-1:three_prime_utr;Parent=Msa1023130-mRNA-1 |
| Gene Sequence |
| Protein sequence |
