AlfalfaGEDB | Msa1108060

M. sativa cultivar zhongmu-4 / Msa1108060

KEGG: K01962
GO: GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009941 GO:0016020 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464
PFAM: PF03255.17

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1108060	RHN46385.1	91.555	746	49	3	15	751	15	755	0.0	1326

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1108060	sp\|Q9LD43\|ACCA_ARATH	60.569	738	257	11	1	719	4	726	0.0	874

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1108060	A0A396H5E3	91.555	746	49	3	15	751	15	755	0.0	1326

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa1023960	Msa1108060	0.931182	5.512185e-94	-8.615850e-47
Msa1063850	Msa1108060	0.829221	5.810105e-55	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1108060	MtrunA17_Chr7g0241651	91.555	746	49	3	15	751	15	755	0.0	1326

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1108060	AT2G38040.1	60.569	738	257	11	1	719	4	726	0.0	874
Msa1108060	AT2G38040.2	60.569	738	257	11	1	719	4	726	0.0	874

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Find 202 sgRNAs with CRISPR-Local

Find 480 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATCGGTGGGTTCAAGGA+AGG	0.607904	7_3:-50633069	Msa1108060:CDS
AAACCAGGACGAGATGGCAA+CGG	0.599480	7_3:-50632370	Msa1108060:CDS
AAAGAAACTGGAAGAGAAAC+TGG	0.369228	7_3:-50632887	Msa1108060:CDS
AAAGTATAAAGCGTAACTTT+GGG	0.506447	7_3:-50635381	Msa1108060:CDS
AAAGTGGAGGTCGCCAAAGC+TGG	0.442807	7_3:-50632244	Msa1108060:CDS
AAATCCAAAATGACCGGCTT+TGG	0.343249	7_3:+50636591	None:intergenic
AACAAGCTGAAGAAGAAGCA+TGG	0.620631	7_3:-50632676	Msa1108060:CDS
AACACCCCACCTTTAACATT+GGG	0.457049	7_3:+50636651	None:intergenic
AACAGATATTAAGAGAATGA+TGG	0.535873	7_3:-50632275	Msa1108060:CDS
AACCAGCCCTGTCCTTCCCA+AGG	0.598935	7_3:+50636761	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TGAAGGAATGAATAGTTAGA+GGG	+	chr7_3:50631160-50631179	None:intergenic	30.0%
AGATGAATGAATGAGAGATT+GGG	+	chr7_3:50631212-50631231	None:intergenic	30.0%
GAGAGAGTTGTTAATATTGT+TGG	+	chr7_3:50631243-50631262	None:intergenic	30.0%
ATTGAGTAGAGATCCAAAAA+AGG	+	chr7_3:50631358-50631377	None:intergenic	30.0%
AAAACCCAAAATCCAAAACT+GGG	+	chr7_3:50631803-50631822	None:intergenic	30.0%
AAAAACCCAAAATCCAAAAC+TGG	+	chr7_3:50631804-50631823	None:intergenic	30.0%
ATAGTTTAATTCTAACCACC+AGG	-	chr7_3:50632246-50632265	Msa1108060:CDS	30.0%
ATTGGAGAATAAGTACCAAA+AGG	-	chr7_3:50633213-50633232	Msa1108060:intron	30.0%
CGGAAAATTGTATATGAATG+TGG	-	chr7_3:50633389-50633408	Msa1108060:intron	30.0%
TTCCATAAACTGCAAAAAAG+AGG	+	chr7_3:50634029-50634048	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_3	gene	50631054	50638510	50631054	ID=Msa1108060;Name=Msa1108060
chr7_3	mRNA	50631054	50638510	50631054	ID=Msa1108060-mRNA-1;Parent=Msa1108060;Name=Msa1108060-mRNA-1;_AED=0.10;_eAED=0.10;_QI=377\|1\|1\|1\|0.75\|0.69\|13\|443\|751
chr7_3	exon	50631054	50631177	50631054	ID=Msa1108060-mRNA-1:exon:10394;Parent=Msa1108060-mRNA-1
chr7_3	exon	50631210	50631527	50631210	ID=Msa1108060-mRNA-1:exon:10393;Parent=Msa1108060-mRNA-1
chr7_3	exon	50632029	50633148	50632029	ID=Msa1108060-mRNA-1:exon:10392;Parent=Msa1108060-mRNA-1
chr7_3	exon	50633244	50633321	50633244	ID=Msa1108060-mRNA-1:exon:10391;Parent=Msa1108060-mRNA-1
chr7_3	exon	50633572	50633640	50633572	ID=Msa1108060-mRNA-1:exon:10390;Parent=Msa1108060-mRNA-1
chr7_3	exon	50633723	50633774	50633723	ID=Msa1108060-mRNA-1:exon:10389;Parent=Msa1108060-mRNA-1
chr7_3	exon	50634379	50634533	50634379	ID=Msa1108060-mRNA-1:exon:10388;Parent=Msa1108060-mRNA-1
chr7_3	exon	50634625	50634739	50634625	ID=Msa1108060-mRNA-1:exon:10387;Parent=Msa1108060-mRNA-1
chr7_3	exon	50635364	50635524	50635364	ID=Msa1108060-mRNA-1:exon:10386;Parent=Msa1108060-mRNA-1
chr7_3	exon	50635659	50635766	50635659	ID=Msa1108060-mRNA-1:exon:10385;Parent=Msa1108060-mRNA-1
chr7_3	exon	50636330	50636404	50636330	ID=Msa1108060-mRNA-1:exon:10384;Parent=Msa1108060-mRNA-1
chr7_3	exon	50636551	50636922	50636551	ID=Msa1108060-mRNA-1:exon:10383;Parent=Msa1108060-mRNA-1
chr7_3	exon	50638182	50638510	50638182	ID=Msa1108060-mRNA-1:exon:10382;Parent=Msa1108060-mRNA-1
chr7_3	five_prime_UTR	50638182	50638510	50638182	ID=Msa1108060-mRNA-1:five_prime_utr;Parent=Msa1108060-mRNA-1
chr7_3	five_prime_UTR	50636875	50636922	50636875	ID=Msa1108060-mRNA-1:five_prime_utr;Parent=Msa1108060-mRNA-1
chr7_3	CDS	50636551	50636874	50636551	ID=Msa1108060-mRNA-1:cds;Parent=Msa1108060-mRNA-1
chr7_3	CDS	50636330	50636404	50636330	ID=Msa1108060-mRNA-1:cds;Parent=Msa1108060-mRNA-1
chr7_3	CDS	50635659	50635766	50635659	ID=Msa1108060-mRNA-1:cds;Parent=Msa1108060-mRNA-1
chr7_3	CDS	50635364	50635524	50635364	ID=Msa1108060-mRNA-1:cds;Parent=Msa1108060-mRNA-1
chr7_3	CDS	50634625	50634739	50634625	ID=Msa1108060-mRNA-1:cds;Parent=Msa1108060-mRNA-1
chr7_3	CDS	50634379	50634533	50634379	ID=Msa1108060-mRNA-1:cds;Parent=Msa1108060-mRNA-1
chr7_3	CDS	50633723	50633774	50633723	ID=Msa1108060-mRNA-1:cds;Parent=Msa1108060-mRNA-1
chr7_3	CDS	50633572	50633640	50633572	ID=Msa1108060-mRNA-1:cds;Parent=Msa1108060-mRNA-1
chr7_3	CDS	50633244	50633321	50633244	ID=Msa1108060-mRNA-1:cds;Parent=Msa1108060-mRNA-1
chr7_3	CDS	50632030	50633148	50632030	ID=Msa1108060-mRNA-1:cds;Parent=Msa1108060-mRNA-1
chr7_3	three_prime_UTR	50632029	50632029	50632029	ID=Msa1108060-mRNA-1:three_prime_utr;Parent=Msa1108060-mRNA-1
chr7_3	three_prime_UTR	50631210	50631527	50631210	ID=Msa1108060-mRNA-1:three_prime_utr;Parent=Msa1108060-mRNA-1
chr7_3	three_prime_UTR	50631054	50631177	50631054	ID=Msa1108060-mRNA-1:three_prime_utr;Parent=Msa1108060-mRNA-1

Gene Sequence

>Msa1108060

ATGGCTTCTTCTTCTGCAACCCTTGCTGGTTCTGCTGCTTCTGATCTTCTGAGGAGTTCGACTGGCGGTTTCACTGGTGTCCCTTTGAGAACCTTGGGAAGGACAGGGCTGGTTTTGAAAAGAAGGGATTTAACAGTTAGTGTTACTGCTAAGTTGAGGAAGGTGAAGAAGAAAGAGTATCCATGGTCTGGTAACCTTGATCCCAATGTTAAAGGTGGGGTGTTGACTCATCTCTCTCCTTTCAAGCCACTCAAAGAGAAGCCAAAGCCGGTCATTTTGGATTTCGAAAAGCCTCTTGTTGATCTGGAAAAGAAGATCAGCGATGTTCGGAAGATGGCAGAGGAAACTGGTTTGGATTTCAGTGATCAGATTCGCTCATTGGAGAATAAGTACCAAAAGGCTTTAAAGAATCTATATACACATCTAACTCCTATACAGAGGGTCAGCATTGCACGACATCCTAACAGGCCAACTTTCCTTGATCACATCTTTAACATAACTGATAAGTTTATGGAACTCCATGGTGATCGAGAAGGTTATGATGATCCTGCTATTGTTACTGGTTTAGGGAGTATAGATGGTAGGACCTACATGTTTATAGGCCACCAAAAGGGTAGAAATACTAAAGAAAGTATAAAGCGTAACTTTGGGATGCCAACTCCACATGGTTATAGGAAAGCTCTACGCATGATGGAATATGCAGATCATCATGGATTCCCAGTAGTTACTTTCATTGACACCCCTGGGGCATATGCTGACCTCAAATCTGAGGAACTTAACCAAGGTGAAGCAATTGCTCATAATTTGAGATCCATGTTTGGTCTGAAGGTGCCAGTTATTTCTATAGTTATTGGGGAAGGTGGATCTGGTGGTGCCCTTGCCATTGGATGCGCTAATAAATTACTCATGCTTGAAAATGCAGTGTTCTATGTTGCCAGTCCAGAGGCGTGTGCTGCAATCTTGTGGAAGAGTTCTAAAGCTGCTCCCAAGGCTGCTAAAAAACTGAAGATTACAGCGACTGAATTGTGCAAATTGAAAGTTGCAGATGGAGTTATACCTGAGCCCCTCGGTGGTGCACATGCTGATCCAAGTTGGACCTCTCAACAGATAAAAATTAAAATCAATGAAGCTATGGATGAACTCACTAAGATGAACACAGAAGACCTGTTAAAACATCGCATGCATAAGTTCCGAAAAATCGGTGGGTTCAAGGAAGGAGTTCCTGTAGATCCCAAGAAAAAAAGAAACATGAAGAAGAGGGATATACCTCCTGAGAAAGTTTCTGATTCTGAATTAGAAGTTCAGATTGAGAAGCTGAAGCAACAAATTTTGAAGTCCTCTTCTGAGCCTCCGAAACTCGATTTAGATGAGGCGATAAAGAAACTGGAAGAGAAACTGGAAAGGGAGGTTGATCAAGAATTGTCTGAGGCCGCTAAAGCATTGGGCTTAACAGAAAGTTTGTCGAAACTACGTGATGAATTTTCAAAAGCAAGTTCAGATGACCAACCTATTGATCCATTGCTGAATGGTAAGATAGAAAAACTAAAGGCAGATTTTAATCGAAGGTTGTCAGCAGCTCCTAATGCTAACAAGCTGAAGAAGAAGCATGGCATGTTGAGAGAATTGAATAAACTGAAGCTTCTTCTGTCAGACAGAAACAAGGAGGCCGCAACACTTACGCAACAACTGAAGAAGAAATTTGATGATGTCATGAATAATCCTAGAATAAAGGAAAACTATGAGGCGTTACAGTCTGAAATCCAGCGTGCTAGCGCATCCTCAGCAAGCGATTTGGATGATGAATTGAAGAAGAAAATCATTGCGTTCAATAAGGAGGTAGACTTGCAGGTGGTTAATGTTGTGAAGTCGGTTGGGTTAGATGTTCAGTTAGTAAAACCAGGACGAGATGGCAACGGGCTTTTGGTGCCTCAGATAGAAGAACTAAACAAGGATGTGAAAAAGGAAATTGAAGTTTTGGCAAACTCGTCAACAGATATTAAGAGAATGATGGAGCAATTGAAAGTGGAGGTCGCCAAAGCTGGAGGGACACCAAATTCGGAATCAAAGAATAGAATTGTTGCTTTGACGCAAAAAATAAAGCAGAGCCTTGCAGAGGCCGTAGGCTCTTCTAGTTTGAAAGAGAGATATGAAAACCTGATGTCTGAAACCTCTGGGGATGTAAGTTTGAAAGTAGGAAATGGTCTCACTGATGACGAGTTGAGAGAGAAAGTTGGTGCAAATCGCTCCTTTTCTTAA

Protein sequence

>Msa1108060

MASSSATLAGSAASDLLRSSTGGFTGVPLRTLGRTGLVLKRRDLTVSVTAKLRKVKKKEYPWSGNLDPNVKGGVLTHLSPFKPLKEKPKPVILDFEKPLVDLEKKISDVRKMAEETGLDFSDQIRSLENKYQKALKNLYTHLTPIQRVSIARHPNRPTFLDHIFNITDKFMELHGDREGYDDPAIVTGLGSIDGRTYMFIGHQKGRNTKESIKRNFGMPTPHGYRKALRMMEYADHHGFPVVTFIDTPGAYADLKSEELNQGEAIAHNLRSMFGLKVPVISIVIGEGGSGGALAIGCANKLLMLENAVFYVASPEACAAILWKSSKAAPKAAKKLKITATELCKLKVADGVIPEPLGGAHADPSWTSQQIKIKINEAMDELTKMNTEDLLKHRMHKFRKIGGFKEGVPVDPKKKRNMKKRDIPPEKVSDSELEVQIEKLKQQILKSSSEPPKLDLDEAIKKLEEKLEREVDQELSEAAKALGLTESLSKLRDEFSKASSDDQPIDPLLNGKIEKLKADFNRRLSAAPNANKLKKKHGMLRELNKLKLLLSDRNKEAATLTQQLKKKFDDVMNNPRIKENYEALQSEIQRASASSASDLDDELKKKIIAFNKEVDLQVVNVVKSVGLDVQLVKPGRDGNGLLVPQIEELNKDVKKEIEVLANSSTDIKRMMEQLKVEVAKAGGTPNSESKNRIVALTQKIKQSLAEAVGSSSLKERYENLMSETSGDVSLKVGNGLTDDELREKVGANRSFS*