AlfalfaGEDB | Msa1108430

M. sativa cultivar zhongmu-4 / Msa1108430

KEGG: -
GO: -
PFAM: PF00069.28

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1108430	XP_003623285.1	96.011	351	14	0	1	351	1	351	0.0	701

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1108430	sp\|Q93YN1\|CRPK1_ARATH	54.221	308	138	2	26	330	23	330	3.93e-115	345

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1108430	G7KS82	96.011	351	14	0	1	351	1	351	0.0	701

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0196020	Msa1108430	-0.800132	1.663157e-48	-8.615850e-47
Msa1049240	Msa1108430	0.942064	1.391178e-101	-8.615850e-47
Msa1108430	Msa1152210	0.806669	7.352780e-50	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1108430	MtrunA17_Chr7g0242201	96.011	351	14	0	1	351	1	351	0.0	701
Msa1108430	MtrunA17_Chr2g0281971	53.693	352	158	1	1	347	1	352	1.05e-137	399
Msa1108430	MtrunA17_Chr4g0047561	56.667	360	150	3	1	356	1	358	2.14e-136	396
Msa1108430	MtrunA17_Chr8g0358911	53.443	305	141	1	27	330	29	333	5.04e-113	337
Msa1108430	MtrunA17_Chr2g0312561	48.024	329	167	3	5	330	3	330	3.13e-110	330
Msa1108430	MtrunA17_Chr8g0360591	50.904	332	159	2	25	352	25	356	3.62e-109	327
Msa1108430	MtrunA17_Chr2g0312571	47.305	334	167	4	5	330	3	335	8.74e-107	324
Msa1108430	MtrunA17_Chr8g0358821	49.102	334	155	4	30	352	676	1005	2.23e-100	322
Msa1108430	MtrunA17_Chr2g0315061	51.903	289	138	1	27	314	20	308	6.86e-100	303
Msa1108430	MtrunA17_Chr8g0358781	51.930	285	134	1	30	314	331	612	2.80e-99	311

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1108430	AT3G09010.1	71.940	335	91	2	1	332	1	335	1.32e-179	507
Msa1108430	AT3G09010.2	66.452	310	88	3	1	308	1	296	6.68e-145	416
Msa1108430	AT1G16670.1	54.221	308	138	2	26	330	23	330	3.99e-116	345
Msa1108430	AT1G56145.3	52.805	303	140	2	27	329	567	866	2.83e-104	330
Msa1108430	AT1G56120.3	53.465	303	138	2	27	329	527	826	8.79e-104	328
Msa1108430	AT1G56145.1	52.805	303	140	2	27	329	670	969	1.68e-103	330
Msa1108430	AT1G56120.2	53.465	303	138	2	27	329	675	974	1.91e-102	328
Msa1108430	AT1G56120.1	53.465	303	138	2	27	329	693	992	2.12e-102	328
Msa1108430	AT1G56145.2	49.390	328	140	3	27	329	670	996	3.63e-101	325
Msa1108430	AT1G53430.2	46.322	367	187	3	27	383	611	977	9.86e-101	323

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Find 105 sgRNAs with CRISPR-Local

Find 336 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACAGTAAAGCTGCAACA+GGG	0.699644	7_3:+51314023	None:intergenic
AAAATTGGTGGAGGAGGTTA+TGG	0.397750	7_3:-51318574	Msa1108430:CDS
AAAGCAGCAAAAGTGGATTC+TGG	0.340525	7_3:+51314063	None:intergenic
AAAGCCGATGTATATAGTTT+TGG	0.248282	7_3:-51317737	Msa1108430:CDS
AAAGCTGCAACAGGGTAACT+TGG	0.409913	7_3:+51314031	None:intergenic
AAATGTGGTTGGAAGATTAT+TGG	0.277006	7_3:-51319703	Msa1108430:five_prime_UTR
AACACTAAATTCAGAATAAA+AGG	0.265689	7_3:+51319826	None:intergenic
AACCGACTATGACGAGAACG+AGG	0.705124	7_3:-51317394	Msa1108430:CDS
AACTCATTGAGATCTGCTAC+TGG	0.501660	7_3:-51318616	Msa1108430:CDS
AAGAGGGCTGCTATTTGCCT+TGG	0.500758	7_3:-51318103	Msa1108430:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAATGTGGTTGGAAGATTAT+TGG	-	chr7_3:51314224-51314243	Msa1108430:intron	30.0%
CAAAAGAGATAGAACTTAGA+AGG	+	chr7_3:51314439-51314458	None:intergenic	30.0%
AGACTAACAATCAATTCTAG+AGG	-	chr7_3:51314565-51314584	Msa1108430:intron	30.0%
CCAAATCTTGTGAAACTAAT+CGG	-	chr7_3:51315602-51315621	Msa1108430:intron	30.0%
AAAAAGTAAATGTGTTCCTC+TGG	-	chr7_3:51315793-51315812	Msa1108430:intron	30.0%
ATATCTCTGTGAACAATGTT+TGG	+	chr7_3:51315890-51315909	None:intergenic	30.0%
GAGAACTTCAATCCAAAAAT+TGG	-	chr7_3:51315935-51315954	Msa1108430:intron	30.0%
TTGTTTAACATTTACTGAGC+AGG	-	chr7_3:51316122-51316141	Msa1108430:intron	30.0%
TGTTTAACATTTACTGAGCA+GGG	-	chr7_3:51316123-51316142	Msa1108430:intron	30.0%
GAATGACATGTTACTATGTT+AGG	+	chr7_3:51316450-51316469	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_3	gene	51314005	51319944	51314005	ID=Msa1108430;Name=Msa1108430
chr7_3	mRNA	51314005	51319944	51314005	ID=Msa1108430-mRNA-1;Parent=Msa1108430;Name=Msa1108430-mRNA-1;_AED=0.24;_eAED=0.24;_QI=252\|0.71\|0.62\|0.75\|1\|1\|8\|0\|446
chr7_3	exon	51314005	51314239	51314005	ID=Msa1108430-mRNA-1:exon:10534;Parent=Msa1108430-mRNA-1
chr7_3	exon	51314670	51314722	51314670	ID=Msa1108430-mRNA-1:exon:10533;Parent=Msa1108430-mRNA-1
chr7_3	exon	51317197	51317469	51317197	ID=Msa1108430-mRNA-1:exon:10532;Parent=Msa1108430-mRNA-1
chr7_3	exon	51317655	51317805	51317655	ID=Msa1108430-mRNA-1:exon:10531;Parent=Msa1108430-mRNA-1
chr7_3	exon	51317923	51318160	51317923	ID=Msa1108430-mRNA-1:exon:10530;Parent=Msa1108430-mRNA-1
chr7_3	exon	51318248	51318458	51318248	ID=Msa1108430-mRNA-1:exon:10529;Parent=Msa1108430-mRNA-1
chr7_3	exon	51318561	51318664	51318561	ID=Msa1108430-mRNA-1:exon:10528;Parent=Msa1108430-mRNA-1
chr7_3	exon	51319617	51319944	51319617	ID=Msa1108430-mRNA-1:exon:10527;Parent=Msa1108430-mRNA-1
chr7_3	five_prime_UTR	51319693	51319944	51319693	ID=Msa1108430-mRNA-1:five_prime_utr;Parent=Msa1108430-mRNA-1
chr7_3	CDS	51319617	51319692	51319617	ID=Msa1108430-mRNA-1:cds;Parent=Msa1108430-mRNA-1
chr7_3	CDS	51318561	51318664	51318561	ID=Msa1108430-mRNA-1:cds;Parent=Msa1108430-mRNA-1
chr7_3	CDS	51318248	51318458	51318248	ID=Msa1108430-mRNA-1:cds;Parent=Msa1108430-mRNA-1
chr7_3	CDS	51317923	51318160	51317923	ID=Msa1108430-mRNA-1:cds;Parent=Msa1108430-mRNA-1
chr7_3	CDS	51317655	51317805	51317655	ID=Msa1108430-mRNA-1:cds;Parent=Msa1108430-mRNA-1
chr7_3	CDS	51317197	51317469	51317197	ID=Msa1108430-mRNA-1:cds;Parent=Msa1108430-mRNA-1
chr7_3	CDS	51314670	51314722	51314670	ID=Msa1108430-mRNA-1:cds;Parent=Msa1108430-mRNA-1
chr7_3	CDS	51314005	51314239	51314005	ID=Msa1108430-mRNA-1:cds;Parent=Msa1108430-mRNA-1

Gene Sequence

>Msa1108430

ATGATTTGCAATTGTTTTGGTCCCTTGAATTGGTGTAAAGGGAAGGGTGAACCTGCTGAGCAGCCACATGAACAAGTGATGAAAACTAAAAGCTTTAGCTATAACTCATTGAGATCTGCTACTGGAGATTTTCATCATTCATGCAAAATTGGTGGAGGAGGTTATGGAGTTGTCTACAAGGGTGTTTTAAGGGATGGTACTCAAGTTGCTATCAAGTCTCTCTCTGTAGAGTCTAAACAAGGAACTCATGAATTTATGACAGAAATTACTATGATATCTAATATACAACATCCAAATCTTGTGAAACTAATCGGCTTCTGTATTGAGGGTAATCATCGAATATTGGTGTACGAGTTTCTCGAGAACAATAGCCTTGCAAGTTCTTTGCTAGGTTCAAAAAGTAAATGTGTTCCTCTGGATTGGCAAAAGAGGGCTGCTATTTGCCTTGGTACAGCTTCGGGTCTAAGCTTTCTTCATGAAGAGGCTCAGCCAAACATTGTTCACAGAGATATCAAAGCCAGCAACATATTGTTGGACGAGAACTTCAATCCAAAAATTGGTGATTTTGGTCTTGCAAAACTTTTTCCTGACAATGTCACACATATTAGTACTCGAGTTGCCGGAACAATGGGATATCTTGCGCCAGAATATGCGCTTCTAAGACAGCTTACAAAGAAAGCCGATGTATATAGTTTTGGGATTCTGATGCTTGAAATAATCAGTGGAAAAAGTAGTAGCAAAGCTGCATTTGGAGACAATATTTTGGTTCTGGTCGAATGGGCATGGAAGCTTAAAGAAGAAAACCGGCTTCTGGAACTTGTTGATACAGAAATAACCGACTATGACGAGAACGAGGTGTATCGGTACCTTGTGATTGCTCTATTTTGCACCCAATCAGGAGCTCAGCACAGACCAACCATGAAACAAGTTCTACAAATGCTTTCCAGACAAGTTCATCTTAATGAGAAGGCATTGACTGAGCCTGGAATATACAGATGGAATGCCTCCGCAAAGACGAGTGGTTCTTCGAATGAGATGTCATCGTCATCTCAATCGCAGGATCTTCCTGGTGTTACCCATCCAAGTATTTGGATCAAAACCCAATTGAATAAATATATGGTGGAAGGTGCCTTGGAGCAAAAGAAAGAGGACTGGAACAAATACAGCGCAAGAATACGAAGATACGGGACAAAAATATGTTCCCCCAAAGTCAGAAGCTTGGCACGGCCCGTGCCAACATGTGGCACGGCCGTGCCCGTCCCAGAATCCACTTTTGCTGCTTTTCTTCAAGCCCAAGTTACCCTGTTGCAGCTTTACTGTTTTATCCCTTTAGTTGCTTAG

Protein sequence

>Msa1108430

MICNCFGPLNWCKGKGEPAEQPHEQVMKTKSFSYNSLRSATGDFHHSCKIGGGGYGVVYKGVLRDGTQVAIKSLSVESKQGTHEFMTEITMISNIQHPNLVKLIGFCIEGNHRILVYEFLENNSLASSLLGSKSKCVPLDWQKRAAICLGTASGLSFLHEEAQPNIVHRDIKASNILLDENFNPKIGDFGLAKLFPDNVTHISTRVAGTMGYLAPEYALLRQLTKKADVYSFGILMLEIISGKSSSKAAFGDNILVLVEWAWKLKEENRLLELVDTEITDYDENEVYRYLVIALFCTQSGAQHRPTMKQVLQMLSRQVHLNEKALTEPGIYRWNASAKTSGSSNEMSSSSQSQDLPGVTHPSIWIKTQLNKYMVEGALEQKKEDWNKYSARIRRYGTKICSPKVRSLARPVPTCGTAVPVPESTFAAFLQAQVTLLQLYCFIPLVA*