AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0196020

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0196020 MtrunA17_Chr2g0287451 100.000 97 0 0 76 172 112 208 3.55e-69 208
Msa0196020 MtrunA17_Chr6g0453281 41.489 94 49 2 71 158 143 236 1.81e-12 63.2
Msa0196020 MtrunA17_Chr7g0217561 38.542 96 39 2 76 158 129 217 3.53e-12 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0196020 AT3G06180.1 62.376 101 34 1 76 172 141 241 1.79e-39 134
Msa0196020 AT5G19025.1 56.436 101 40 1 76 172 159 259 3.50e-36 126
Msa0196020 AT5G19025.2 55.238 105 39 2 76 172 159 263 1.91e-34 122
Msa0196020 AT3G01170.1 38.889 108 51 4 56 156 113 212 1.57e-13 66.2
Msa0196020 AT5G15260.2 43.820 89 46 3 76 160 144 232 1.06e-11 61.6
Msa0196020 AT5G15260.1 43.820 89 46 3 76 160 144 232 1.06e-11 61.6

Find 87 sgRNAs with CRISPR-Local

Find 578 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTCATGGTTACTCATTTAT+TGG 0.144693 2_1:-12992512 Msa0196020:three_prime_UTR
ACGATGAACCACATGTTTAT+TGG 0.207227 2_1:+12992373 None:intergenic
AGGAAAATGGCTCCTGTTAA+TGG 0.248247 2_1:-12999632 Msa0196020:CDS
ACACCCAATGCAACTCTTAA+TGG 0.253723 2_1:-12992599 Msa0196020:CDS
GTTGCTAAGCTTGAAGCTTC+TGG 0.282017 2_1:-12999569 Msa0196020:CDS
TTCTCCATCGGTTTCGTCTT+CGG 0.286647 2_1:-12999842 Msa0196020:CDS
GAGGTCGAGGGTGGCGGATG+GGG 0.291939 2_1:+12999997 None:intergenic
ATTTGAAGATAGAGAGATTA+GGG 0.294551 2_1:-12999739 Msa0196020:CDS
AAAAGAGCTTTCCCATTAAC+AGG 0.315760 2_1:+12999620 None:intergenic
AGGAAGGGAGGAGGAGAGAG+AGG 0.319372 2_1:+12999903 None:intergenic
TTCTGACGCTTTCCTTTCTT+AGG 0.324406 2_1:+12999545 None:intergenic
AGATAGAGAGATTAGGGTTA+GGG 0.332443 2_1:-12999733 Msa0196020:CDS
ATGATGAATGCGAGGATGTA+AGG 0.334695 2_1:+12999866 None:intergenic
TCTTTCTTATAAAGATTGTT+TGG 0.337739 2_1:+12992477 None:intergenic
TGGGGAGAGAGAAGGAAGGG+AGG 0.363640 2_1:+12999891 None:intergenic
AAGATAGAGAGATTAGGGTT+AGG 0.375742 2_1:-12999734 Msa0196020:CDS
GAGGTCTGAGTTAAGGAAAA+TGG 0.398152 2_1:-12999645 Msa0196020:CDS
CATAAGTTTATAGACACTCT+TGG 0.398474 2_1:+12992417 None:intergenic
GAGAGATTAGGGTTAGGGTT+TGG 0.401531 2_1:-12999728 Msa0196020:CDS
AGAGAACGAGGAGGAGGATG+AGG 0.403514 2_1:+12999975 None:intergenic
CGAGGAAGTGTGAGCGGAAA+GGG 0.417141 2_1:-12999793 Msa0196020:intron
GGAAAATGGCTCCTGTTAAT+GGG 0.417774 2_1:-12999631 Msa0196020:CDS
TCCTCCATTAAGAGTTGCAT+TGG 0.418261 2_1:+12992595 None:intergenic
GATGAGGAGGTCGAGGGTGG+CGG 0.419973 2_1:+12999991 None:intergenic
GACCTCAAACACTCATAATC+AGG 0.422373 2_1:+12999662 None:intergenic
GATTTGAAGATAGAGAGATT+AGG 0.426811 2_1:-12999740 Msa0196020:CDS
TGTAGAGGATGTAGGAAGAG+AGG 0.435172 2_1:+12999936 None:intergenic
GTTGAAGATGTAGAGGATGT+AGG 0.435475 2_1:+12999928 None:intergenic
GTGAATATGAGAAACTTCCT+TGG 0.438620 2_1:-12999706 Msa0196020:CDS
GGAGGAGGATGAGGAGGTCG+AGG 0.441658 2_1:+12999984 None:intergenic
GGAGAGAGAAGGAAGGGAGG+AGG 0.454349 2_1:+12999894 None:intergenic
AGAGGGAGTTGAAGATGTAG+AGG 0.456028 2_1:+12999921 None:intergenic
ATAAGTTTATAGACACTCTT+GGG 0.464511 2_1:+12992418 None:intergenic
ATCCTGATTATGAGTGTTTG+AGG 0.464912 2_1:-12999664 Msa0196020:CDS
GAGGATGAGGAGGTCGAGGG+TGG 0.469592 2_1:+12999988 None:intergenic
AAAATAGGTGAAATAATTCA+AGG 0.469671 2_1:+12992299 None:intergenic
AGGAGGTCGAGGGTGGCGGA+TGG 0.474368 2_1:+12999995 None:intergenic
GTAAGGGATGGGGAGAGAGA+AGG 0.474797 2_1:+12999883 None:intergenic
GGAAGGGAGGAGGAGAGAGA+GGG 0.479217 2_1:+12999904 None:intergenic
GGAGGTCGAGGGTGGCGGAT+GGG 0.479340 2_1:+12999996 None:intergenic
GAAGCTTCAAGCTTAGCAAC+AGG 0.479449 2_1:+12999572 None:intergenic
AGTGTTTGAGGTCTGAGTTA+AGG 0.480456 2_1:-12999652 Msa0196020:CDS
CCTCCATTAAGAGTTGCATT+GGG 0.488597 2_1:+12992596 None:intergenic
GCATTCATCATCTTCTCCAT+CGG 0.493706 2_1:-12999854 Msa0196020:CDS
CGGAGAAGAGAACGAGGAGG+AGG 0.502036 2_1:+12999969 None:intergenic
CTCCTCCTCGTTCTCTTCTC+CGG 0.508827 2_1:-12999968 Msa0196020:CDS
AGAGGATGTAGGAAGAGAGG+AGG 0.509455 2_1:+12999939 None:intergenic
CCTTGGAAAGGTGGGAGTGA+AGG 0.509828 2_1:-12999689 Msa0196020:CDS
TAAATGAGTAACCATGAGAA+TGG 0.511091 2_1:+12992516 None:intergenic
CTTGGAAAGGTGGGAGTGAA+GGG 0.516479 2_1:-12999688 Msa0196020:CDS
AATGCGAGGATGTAAGGGAT+GGG 0.524206 2_1:+12999872 None:intergenic
GAGAAACTTCCTTGGAAAGG+TGG 0.532025 2_1:-12999698 Msa0196020:CDS
CCTTCACTCCCACCTTTCCA+AGG 0.533293 2_1:+12999689 None:intergenic
GAGTGTCTATAAACTTATGA+AGG 0.534405 2_1:-12992413 Msa0196020:three_prime_UTR
GAAGCTTCTGGTCCTAAGAA+AGG 0.534494 2_1:-12999557 Msa0196020:CDS
TTAAACCATTGCCATTCTCA+TGG 0.536561 2_1:-12992527 Msa0196020:three_prime_UTR
GGAAGAGAGGAGGAACGCGC+CGG 0.539333 2_1:+12999949 None:intergenic
GGATGGGGAGAGAGAAGGAA+GGG 0.553140 2_1:+12999888 None:intergenic
GAGGAGGATGAGGAGGTCGA+GGG 0.555296 2_1:+12999985 None:intergenic
GGGATGGGGAGAGAGAAGGA+AGG 0.558143 2_1:+12999887 None:intergenic
ATGCGAGGATGTAAGGGATG+GGG 0.563162 2_1:+12999873 None:intergenic
TATGTTGCGGTGCTCGATCG+AGG 0.567177 2_1:-12999811 Msa0196020:CDS
AGAAACTTCCTTGGAAAGGT+GGG 0.577982 2_1:-12999697 Msa0196020:CDS
TCGAGGAAGTGTGAGCGGAA+AGG 0.582933 2_1:-12999794 Msa0196020:CDS
AAATAGGTGAAATAATTCAA+GGG 0.583940 2_1:+12992300 None:intergenic
TGATGAATGCGAGGATGTAA+GGG 0.585002 2_1:+12999867 None:intergenic
GAATGCGAGGATGTAAGGGA+TGG 0.586112 2_1:+12999871 None:intergenic
TATGAGAAACTTCCTTGGAA+AGG 0.586994 2_1:-12999701 Msa0196020:CDS
AGTAACCATGAGAATGGCAA+TGG 0.596922 2_1:+12992522 None:intergenic
AATGCAACTCTTAATGGAGG+AGG 0.599567 2_1:-12992593 Msa0196020:CDS
GAACGAGGAGGAGGATGAGG+AGG 0.608762 2_1:+12999978 None:intergenic
ACGCGCCGGAGAAGAGAACG+AGG 0.608896 2_1:+12999963 None:intergenic
AGAAAGGAAAGCGTCAGAAG+AGG 0.610714 2_1:-12999541 Msa0196020:intron
TCTTGGGCAGTTCAGATACA+AGG 0.617141 2_1:+12992434 None:intergenic
AATTCAAGGGATGATAGAGT+CGG 0.622369 2_1:+12992313 None:intergenic
TCGTTGATCCACCACTGCGT+AGG 0.634415 2_1:-12992564 Msa0196020:exon
CTCGATCGAGGAAGTGTGAG+CGG 0.637391 2_1:-12999799 Msa0196020:CDS
GGGCAGTTCAGATACAAGGA+AGG 0.640332 2_1:+12992438 None:intergenic
GTGACATGCCTACGCAGTGG+TGG 0.642411 2_1:+12992556 None:intergenic
CGCCGGAGAAGAGAACGAGG+AGG 0.649974 2_1:+12999966 None:intergenic
AAAACCGAAGACGAAACCGA+TGG 0.658416 2_1:+12999838 None:intergenic
CCCAATGCAACTCTTAATGG+AGG 0.663648 2_1:-12992596 Msa0196020:CDS
TAAAGGGTTGAAGAAAGCGA+CGG 0.685657 2_1:-12999768 Msa0196020:intron
TGGAGAAGATGATGAATGCG+AGG 0.698786 2_1:+12999858 None:intergenic
AGTTGACTCCAATAAACATG+TGG 0.699128 2_1:-12992381 Msa0196020:three_prime_UTR
TTAGCAACAGGACAACCACA+AGG 0.706608 2_1:+12999584 None:intergenic
TATGTGACATGCCTACGCAG+TGG 0.803741 2_1:+12992553 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAAAAACAAAAATTACATA+TGG - chr2_1:12997347-12997366 Msa0196020:intron 10.0%
!! TAAAAACAAAAATTACATAT+GGG - chr2_1:12997348-12997367 Msa0196020:intron 10.0%
!!! ATCAAAATCTACTTATTTTT+TGG - chr2_1:12993354-12993373 Msa0196020:intron 15.0%
!!! TCAAAATCTACTTATTTTTT+GGG - chr2_1:12993355-12993374 Msa0196020:intron 15.0%
!! CAATAATAAATAGTTGTTAA+AGG + chr2_1:12993493-12993512 None:intergenic 15.0%
!! CTTTAACAACTATTTATTAT+TGG - chr2_1:12993491-12993510 Msa0196020:intron 15.0%
!! CAATAATAAATAGTTGTTAA+AGG + chr2_1:12993493-12993512 None:intergenic 15.0%
!! CTTTAACAACTATTTATTAT+TGG - chr2_1:12993491-12993510 Msa0196020:intron 15.0%
!!! TACAATTTATCAATTTTTTG+TGG - chr2_1:12995406-12995425 Msa0196020:intron 15.0%
!!! TTTAAAATCATTAACAACAT+CGG + chr2_1:12997928-12997947 None:intergenic 15.0%
!! AAAATTTGGAAAACAATTAA+TGG + chr2_1:12998109-12998128 None:intergenic 15.0%
!!! ATTAATTGTTTTCCAAATTT+TGG - chr2_1:12998108-12998127 Msa0196020:intron 15.0%
!! AAATAAATACTCAATTCATA+AGG + chr2_1:12998189-12998208 None:intergenic 15.0%
!!! AGTATTTATTTTTCAATGTT+TGG - chr2_1:12998198-12998217 Msa0196020:intron 15.0%
!!! TGTTTACAAATTTTTATAAC+TGG + chr2_1:12998535-12998554 None:intergenic 15.0%
!! TTGATTCAATTTGTCTAATT+TGG - chr2_1:12992820-12992839 Msa0196020:intron 20.0%
!! TGATTCAATTTGTCTAATTT+GGG - chr2_1:12992821-12992840 Msa0196020:intron 20.0%
!!! GATTTTGATTTTTTGTTTTG+TGG - chr2_1:12992867-12992886 Msa0196020:intron 20.0%
!!! GTTTGTTTAATTGTTTTGAT+TGG - chr2_1:12992921-12992940 Msa0196020:intron 20.0%
!!! ATCAAAATCTGCTTATTTTT+TGG - chr2_1:12993880-12993899 Msa0196020:intron 20.0%
!!! TCAAAATCTGCTTATTTTTT+GGG - chr2_1:12993881-12993900 Msa0196020:intron 20.0%
!! AAAAGTTAAAAGATAAGTGA+GGG + chr2_1:12994873-12994892 None:intergenic 20.0%
!! TAAAAGTTAAAAGATAAGTG+AGG + chr2_1:12994874-12994893 None:intergenic 20.0%
!!! TGCCAAAATTTATGTTATTT+GGG - chr2_1:12994898-12994917 Msa0196020:intron 20.0%
!! ACAGATATAATTCAGTAAAA+AGG + chr2_1:12995449-12995468 None:intergenic 20.0%
!!! GACCTTTTAAAATTTTGAAT+GGG - chr2_1:12995595-12995614 Msa0196020:intron 20.0%
!!! ACCTTTTAAAATTTTGAATG+GGG - chr2_1:12995596-12995615 Msa0196020:intron 20.0%
!!! AATTTGATTTTCCATTTCTA+TGG + chr2_1:12995987-12996006 None:intergenic 20.0%
!! AATCATAAATGTATGAGATT+AGG - chr2_1:12996623-12996642 Msa0196020:intron 20.0%
!! ATCATAAATGTATGAGATTA+GGG - chr2_1:12996624-12996643 Msa0196020:intron 20.0%
!!! TTTTGCTATAATCTTCTTTT+TGG + chr2_1:12996761-12996780 None:intergenic 20.0%
!! TCAATAAATAGCTAATTGTT+GGG + chr2_1:12997178-12997197 None:intergenic 20.0%
!! ATCAATAAATAGCTAATTGT+TGG + chr2_1:12997179-12997198 None:intergenic 20.0%
!! AATATCTACTAAATTGCTTA+TGG - chr2_1:12997222-12997241 Msa0196020:intron 20.0%
!! CAAGATTAACAATTTAACAT+TGG - chr2_1:12997281-12997300 Msa0196020:intron 20.0%
!!! CAATTTCTTATTTATGCTTT+AGG - chr2_1:12997981-12998000 Msa0196020:intron 20.0%
!! ATTTATACAACTCCAAAATT+TGG + chr2_1:12998123-12998142 None:intergenic 20.0%
!!! AATTTTGGAGTTGTATAAAT+CGG - chr2_1:12998123-12998142 Msa0196020:intron 20.0%
!!! TTATTTTTCAATGTTTGGTT+TGG - chr2_1:12998203-12998222 Msa0196020:intron 20.0%
!! TTTCTAATAATATAGAGAAG+AGG + chr2_1:12999018-12999037 None:intergenic 20.0%
!!! TTGAATTTTTTCTGATATTG+TGG - chr2_1:12999533-12999552 Msa0196020:intron 20.0%
!!! CATGCATTTTAAGTAAAAAA+AGG - chr2_1:12999559-12999578 Msa0196020:CDS 20.0%
!! CTTCAATAAATTTGAATTAG+TGG + chr2_1:12999624-12999643 None:intergenic 20.0%
!! TCTTTCTTATAAAGATTGTT+TGG + chr2_1:12999831-12999850 None:intergenic 20.0%
! ATTTGAAGATAGAGAGATTA+GGG - chr2_1:12992566-12992585 Msa0196020:exon 25.0%
!!! TTTGATTTTTTGTTTTGTGG+TGG - chr2_1:12992870-12992889 Msa0196020:intron 25.0%
!!! ATTAGATTTTGAGGATGTTT+TGG - chr2_1:12992949-12992968 Msa0196020:intron 25.0%
!! ATCTGATTGTGTGAAATTTT+AGG - chr2_1:12992993-12993012 Msa0196020:intron 25.0%
!! TCTGATTGTGTGAAATTTTA+GGG - chr2_1:12992994-12993013 Msa0196020:intron 25.0%
!! ACTTTTATGAAAAGAAAGCT+TGG - chr2_1:12993060-12993079 Msa0196020:intron 25.0%
!!! TGGTAAAGGTTATTTTTGAT+CGG - chr2_1:12993080-12993099 Msa0196020:intron 25.0%
! AAAAACTAAAATGTGAGATC+TGG + chr2_1:12993327-12993346 None:intergenic 25.0%
! ATATTTCTTCGTTAAAATCG+TGG - chr2_1:12994087-12994106 Msa0196020:intron 25.0%
!! ATCAAAATCTGCTTATGTTT+TGG - chr2_1:12994405-12994424 Msa0196020:intron 25.0%
!! TCAAAATCTGCTTATGTTTT+GGG - chr2_1:12994406-12994425 Msa0196020:intron 25.0%
!! TTTTCTTTACCACAATTTCA+AGG + chr2_1:12994577-12994596 None:intergenic 25.0%
! TTACTTGTGATTCACATATA+CGG - chr2_1:12994634-12994653 Msa0196020:intron 25.0%
! CATTGAAATCACATCAATTT+CGG + chr2_1:12994815-12994834 None:intergenic 25.0%
!!! CAAATAACATAAATTTTGGC+AGG + chr2_1:12994899-12994918 None:intergenic 25.0%
! CTGCCAAAATTTATGTTATT+TGG - chr2_1:12994897-12994916 Msa0196020:intron 25.0%
!! AGCCCAAATAACATAAATTT+TGG + chr2_1:12994903-12994922 None:intergenic 25.0%
! GGTTAAAGATAAATTCACTT+TGG + chr2_1:12995043-12995062 None:intergenic 25.0%
! ATTTATCTTTAACCTGAGTA+CGG - chr2_1:12995049-12995068 Msa0196020:intron 25.0%
! TCATAAGGTTATATCTACAA+CGG + chr2_1:12995129-12995148 None:intergenic 25.0%
! AAAGACAATACAAATTCAGT+AGG - chr2_1:12995257-12995276 Msa0196020:intron 25.0%
! ATTGTAATATATCGTGAAGA+GGG + chr2_1:12995392-12995411 None:intergenic 25.0%
! AATTGTAATATATCGTGAAG+AGG + chr2_1:12995393-12995412 None:intergenic 25.0%
!!! GGACCTTTTAAAATTTTGAA+TGG - chr2_1:12995594-12995613 Msa0196020:intron 25.0%
!! TCCCCATTCAAAATTTTAAA+AGG + chr2_1:12995600-12995619 None:intergenic 25.0%
! TCAACGTTAGATTTATTGAA+CGG + chr2_1:12995770-12995789 None:intergenic 25.0%
!! TTAATCCAATTTTACGGAAA+CGG + chr2_1:12996393-12996412 None:intergenic 25.0%
!! GTCATCTTAATCCAATTTTA+CGG + chr2_1:12996399-12996418 None:intergenic 25.0%
! CTTAGGATAAATATTACATC+AGG + chr2_1:12996421-12996440 None:intergenic 25.0%
! CTATTACTACTAGATTTCTT+AGG + chr2_1:12996438-12996457 None:intergenic 25.0%
! TATATGCATACTATGATACT+AGG - chr2_1:12996478-12996497 Msa0196020:intron 25.0%
! GTTCAATGATAGTATGAATA+GGG + chr2_1:12996651-12996670 None:intergenic 25.0%
! AGTTCAATGATAGTATGAAT+AGG + chr2_1:12996652-12996671 None:intergenic 25.0%
! TATTCATACTATCATTGAAC+TGG - chr2_1:12996651-12996670 Msa0196020:intron 25.0%
! CCATTGATATCTTTGTTAAA+TGG + chr2_1:12996791-12996810 None:intergenic 25.0%
! CCATTTAACAAAGATATCAA+TGG - chr2_1:12996788-12996807 Msa0196020:intron 25.0%
!! TTGTTCAAAAGCAATTTTAG+AGG + chr2_1:12996837-12996856 None:intergenic 25.0%
! TAAATGCAATGAATAGATAC+TGG - chr2_1:12996964-12996983 Msa0196020:intron 25.0%
! AAAAGTGAACATTTCAAAGT+TGG + chr2_1:12996992-12997011 None:intergenic 25.0%
!!! CTTTTTTATATCCGAAATTG+TGG - chr2_1:12997007-12997026 Msa0196020:intron 25.0%
! TTCCAGTATATCTTAATCTA+AGG - chr2_1:12997764-12997783 Msa0196020:intron 25.0%
!! CATTTTCAAATCAAAGACTT+AGG + chr2_1:12997862-12997881 None:intergenic 25.0%
!!! TTATTTATGCTTTAGGATTG+TGG - chr2_1:12997988-12998007 Msa0196020:intron 25.0%
! GTTTCAACTTCCAAAATAAT+CGG - chr2_1:12998404-12998423 Msa0196020:intron 25.0%
! TTTCAACTTCCAAAATAATC+GGG - chr2_1:12998405-12998424 Msa0196020:intron 25.0%
! TGTTTAAATATAGACCTTGT+CGG + chr2_1:12998454-12998473 None:intergenic 25.0%
! TAGTCAAGTGTAAAAACAAT+AGG + chr2_1:12998673-12998692 None:intergenic 25.0%
! CTAACATTCATTCTCTTATT+GGG + chr2_1:12998976-12998995 None:intergenic 25.0%
! TCTAACATTCATTCTCTTAT+TGG + chr2_1:12998977-12998996 None:intergenic 25.0%
!!! GCTTAAAGGACTTATTTTTT+TGG - chr2_1:12999060-12999079 Msa0196020:intron 25.0%
!! GATTTAAAGTTATACACTGA+TGG + chr2_1:12999304-12999323 None:intergenic 25.0%
!!! TTATGTAATCTGTTTTGATC+TGG - chr2_1:12999330-12999349 Msa0196020:intron 25.0%
!! ATCATGACTTATTTGAGTTA+AGG - chr2_1:12999374-12999393 Msa0196020:intron 25.0%
! ATAAGTTTATAGACACTCTT+GGG + chr2_1:12999890-12999909 None:intergenic 25.0%
!! ACATTTTACAACAACTGAAA+TGG + chr2_1:12999962-12999981 None:intergenic 25.0%
GATTTGAAGATAGAGAGATT+AGG - chr2_1:12992565-12992584 Msa0196020:exon 30.0%
!! TTTTGTGGTGGAATTGAATT+GGG - chr2_1:12992882-12992901 Msa0196020:intron 30.0%
! TTGGTGTGAATTAGATTTTG+AGG - chr2_1:12992940-12992959 Msa0196020:intron 30.0%
ATGAAAAGAAAGCTTGGTAA+AGG - chr2_1:12993066-12993085 Msa0196020:intron 30.0%
!!! GGTAAAGGTTATTTTTGATC+GGG - chr2_1:12993081-12993100 Msa0196020:intron 30.0%
TTCAACACTAGAACACTATA+AGG + chr2_1:12993531-12993550 None:intergenic 30.0%
! ATATTTCTGCGTTAAAATCG+TGG - chr2_1:12993562-12993581 Msa0196020:intron 30.0%
AGCTAACAATAACACAAAAC+TGG + chr2_1:12993980-12993999 None:intergenic 30.0%
!! GTTTTGTGTTATTGTTAGCT+CGG - chr2_1:12993980-12993999 Msa0196020:intron 30.0%
! ATGTTGGCTAAGTACAAATT+CGG + chr2_1:12994681-12994700 None:intergenic 30.0%
CTAACCTAGTTATGAATGAA+AGG + chr2_1:12994710-12994729 None:intergenic 30.0%
AACTAGGTTAGTGATTTGAA+TGG - chr2_1:12994719-12994738 Msa0196020:intron 30.0%
GCGATTTATTTATGCCATAA+GGG - chr2_1:12994741-12994760 Msa0196020:intron 30.0%
CGATTTATTTATGCCATAAG+GGG - chr2_1:12994742-12994761 Msa0196020:intron 30.0%
CGAAATTGATGTGATTTCAA+TGG - chr2_1:12994813-12994832 Msa0196020:intron 30.0%
ATATTAACCCAGAAAGATCA+TGG + chr2_1:12995084-12995103 None:intergenic 30.0%
TGTTCTTAAAACAAAAAGGG+AGG + chr2_1:12995186-12995205 None:intergenic 30.0%
!!! TCCCTTTTTGTTTTAAGAAC+AGG - chr2_1:12995185-12995204 Msa0196020:intron 30.0%
CCCTGTTCTTAAAACAAAAA+GGG + chr2_1:12995189-12995208 None:intergenic 30.0%
!!! CCCTTTTTGTTTTAAGAACA+GGG - chr2_1:12995186-12995205 Msa0196020:intron 30.0%
ACCCTGTTCTTAAAACAAAA+AGG + chr2_1:12995190-12995209 None:intergenic 30.0%
GGTACAAAATCTACTAAAAG+AGG + chr2_1:12995371-12995390 None:intergenic 30.0%
CTGAATTATATCTGTAGTCT+TGG - chr2_1:12995454-12995473 Msa0196020:intron 30.0%
!! CAAAATTTTAAAAGGTCCCA+AGG + chr2_1:12995592-12995611 None:intergenic 30.0%
CAACGTTAGATTTATTGAAC+GGG + chr2_1:12995769-12995788 None:intergenic 30.0%
CCATTTCTATGGTTCTTTAA+TGG + chr2_1:12995976-12995995 None:intergenic 30.0%
CCATTAAAGAACCATAGAAA+TGG - chr2_1:12995973-12995992 Msa0196020:intron 30.0%
ATTGTATTCAGAGTTGAGAA+AGG - chr2_1:12996241-12996260 Msa0196020:intron 30.0%
TTGTATTCAGAGTTGAGAAA+GGG - chr2_1:12996242-12996261 Msa0196020:intron 30.0%
TAGCATGACATTTGAGTATT+TGG - chr2_1:12996455-12996474 Msa0196020:intron 30.0%
AATTCAGTATATGACACAGA+AGG - chr2_1:12996518-12996537 Msa0196020:intron 30.0%
ATACTGAAGACAAATATGCA+AGG + chr2_1:12997130-12997149 None:intergenic 30.0%
TGTCTTCAGTATCTTCTTTA+TGG - chr2_1:12997138-12997157 Msa0196020:intron 30.0%
CTACATAAATAAGGAAACCA+AGG - chr2_1:12997307-12997326 Msa0196020:intron 30.0%
TCTCAATAGGTTTGATCATT+AGG + chr2_1:12997411-12997430 None:intergenic 30.0%
TCAACTCATAGAATCTCAAT+AGG + chr2_1:12997424-12997443 None:intergenic 30.0%
!! AGATCTATAAGAGTGTCAAT+AGG - chr2_1:12997576-12997595 Msa0196020:intron 30.0%
TATCTGCCTAGATCTAAATT+AGG - chr2_1:12997663-12997682 Msa0196020:intron 30.0%
!! TGATCTATAAGAGTGTCAAT+AGG - chr2_1:12997717-12997736 Msa0196020:intron 30.0%
TGCCTTAGATTAAGATATAC+TGG + chr2_1:12997769-12997788 None:intergenic 30.0%
TTCTTCATAGAGTACATCAT+TGG + chr2_1:12997960-12997979 None:intergenic 30.0%
ACTAATAAGCATGTGAGAAA+AGG + chr2_1:12998019-12998038 None:intergenic 30.0%
! AACATTGTCCTTTTCTTGTT+AGG - chr2_1:12998271-12998290 Msa0196020:intron 30.0%
CCATTTCTTTACTAAATAGC+CGG - chr2_1:12998305-12998324 Msa0196020:intron 30.0%
CATTTCTTTACTAAATAGCC+GGG - chr2_1:12998306-12998325 Msa0196020:intron 30.0%
! TCTGGAATACAAATAAAACC+CGG + chr2_1:12998327-12998346 None:intergenic 30.0%
! CTCTTTTTATCATGCATATC+TGG + chr2_1:12998345-12998364 None:intergenic 30.0%
CAGATATGCATGATAAAAAG+AGG - chr2_1:12998343-12998362 Msa0196020:intron 30.0%
AACTCTTTCATAGCAATCTT+TGG + chr2_1:12998504-12998523 None:intergenic 30.0%
GTAGTGCATAATTAGTAACT+TGG + chr2_1:12998572-12998591 None:intergenic 30.0%
TTATTGGGTGAAAACAATGT+GGG + chr2_1:12998961-12998980 None:intergenic 30.0%
ATCTTATTCGATTCATTCCT+AGG - chr2_1:12999098-12999117 Msa0196020:intron 30.0%
ATGTAAGGTACATTTGCAAA+AGG + chr2_1:12999199-12999218 None:intergenic 30.0%
!! AGGATGTTTATTTTCCACTT+TGG - chr2_1:12999394-12999413 Msa0196020:intron 30.0%
!! GGATGTTTATTTTCCACTTT+GGG - chr2_1:12999395-12999414 Msa0196020:intron 30.0%
!! GATGTTTATTTTCCACTTTG+GGG - chr2_1:12999396-12999415 Msa0196020:intron 30.0%
!! ATGTTTATTTTCCACTTTGG+GGG - chr2_1:12999397-12999416 Msa0196020:intron 30.0%
CTGAATGTCTAAAAGAAACT+GGG + chr2_1:12999433-12999452 None:intergenic 30.0%
TCTGAATGTCTAAAAGAAAC+TGG + chr2_1:12999434-12999453 None:intergenic 30.0%
! GTTTCTTTTAGACATTCAGA+AGG - chr2_1:12999434-12999453 Msa0196020:intron 30.0%
CTTGTGATAACAATGTCTAT+TGG + chr2_1:12999509-12999528 None:intergenic 30.0%
TAAATGAGTAACCATGAGAA+TGG + chr2_1:12999792-12999811 None:intergenic 30.0%
TCTCATGGTTACTCATTTAT+TGG - chr2_1:12999793-12999812 Msa0196020:intron 30.0%
CATAAGTTTATAGACACTCT+TGG + chr2_1:12999891-12999910 None:intergenic 30.0%
GAGTGTCTATAAACTTATGA+AGG - chr2_1:12999892-12999911 Msa0196020:CDS 30.0%
!!! TTCGGTTTTGAGATATGTTG+CGG - chr2_1:12992481-12992500 Msa0196020:three_prime_UTR 35.0%
AAGATAGAGAGATTAGGGTT+AGG - chr2_1:12992571-12992590 Msa0196020:exon 35.0%
AGATAGAGAGATTAGGGTTA+GGG - chr2_1:12992572-12992591 Msa0196020:exon 35.0%
GTGAATATGAGAAACTTCCT+TGG - chr2_1:12992599-12992618 Msa0196020:CDS 35.0%
TATGAGAAACTTCCTTGGAA+AGG - chr2_1:12992604-12992623 Msa0196020:CDS 35.0%
ATCCTGATTATGAGTGTTTG+AGG - chr2_1:12992641-12992660 Msa0196020:intron 35.0%
AAAAGAGCTTTCCCATTAAC+AGG + chr2_1:12992688-12992707 None:intergenic 35.0%
!! GTTTTGTGGTGGAATTGAAT+TGG - chr2_1:12992881-12992900 Msa0196020:intron 35.0%
AGCTAACAATAACACGAAAC+CGG + chr2_1:12993454-12993473 None:intergenic 35.0%
! GTTTCGTGTTATTGTTAGCT+CGG - chr2_1:12993454-12993473 Msa0196020:intron 35.0%
TCGTGGTAAAGAAAAGCTAT+CGG - chr2_1:12993579-12993598 Msa0196020:intron 35.0%
GTAAAGAAAAGCTATCGGTA+GGG - chr2_1:12993584-12993603 Msa0196020:intron 35.0%
AACTAAAATCACCGAGTTTG+AGG + chr2_1:12993850-12993869 None:intergenic 35.0%
TTCAACACTAGAACACTATC+AGG + chr2_1:12994056-12994075 None:intergenic 35.0%
TCGTGGTAAAGAAAAGCTAT+CGG - chr2_1:12993579-12993598 Msa0196020:intron 35.0%
GTAAAGAAAAGCTATCGGTA+GGG - chr2_1:12993584-12993603 Msa0196020:intron 35.0%
TCGGTAGGGTTATTATCAAT+CGG - chr2_1:12994123-12994142 Msa0196020:intron 35.0%
ATGCAATCATAGATTGAGAC+TGG - chr2_1:12994339-12994358 Msa0196020:intron 35.0%
! AAATCAGTGAGTTTGAGATC+TGG + chr2_1:12994370-12994389 None:intergenic 35.0%
ACATTTCTGCCTTGAAATTG+TGG - chr2_1:12994565-12994584 Msa0196020:intron 35.0%
GGTAAAGAAAAGCTATCAGT+AGG - chr2_1:12994586-12994605 Msa0196020:intron 35.0%
GAATGAAAGGCAACTTATGT+TGG + chr2_1:12994697-12994716 None:intergenic 35.0%
GTTGCCTTTCATTCATAACT+AGG - chr2_1:12994703-12994722 Msa0196020:intron 35.0%
GGCGATTTATTTATGCCATA+AGG - chr2_1:12994740-12994759 Msa0196020:intron 35.0%
AAAGGCTGAAAGATAAGTGA+GGG + chr2_1:12994785-12994804 None:intergenic 35.0%
TAAAGGCTGAAAGATAAGTG+AGG + chr2_1:12994786-12994805 None:intergenic 35.0%
ATAAGTGAGGGAAAGAAATC+TGG + chr2_1:12994861-12994880 None:intergenic 35.0%
TATGCACCTTCTGTGAATTT+CGG - chr2_1:12994947-12994966 Msa0196020:intron 35.0%
TAACCTTATGAAGCTCACTT+TGG - chr2_1:12995138-12995157 Msa0196020:intron 35.0%
CAAAAAGGGAGGAAATACTA+AGG + chr2_1:12995175-12995194 None:intergenic 35.0%
TGCAGCAACTTAGATTACAT+AGG - chr2_1:12995339-12995358 Msa0196020:intron 35.0%
AGAATCTTAAGAAACCTGTG+AGG - chr2_1:12995479-12995498 Msa0196020:intron 35.0%
GAATTCCACAATTTGGCAAT+AGG + chr2_1:12995515-12995534 None:intergenic 35.0%
ATTGCCAAATTGTGGAATTC+AGG - chr2_1:12995515-12995534 Msa0196020:intron 35.0%
AACACCTGAATTCCACAATT+TGG + chr2_1:12995522-12995541 None:intergenic 35.0%
AAATTGTGGAATTCAGGTGT+TGG - chr2_1:12995521-12995540 Msa0196020:intron 35.0%
AAATGTGAGTTCTGTTCCTT+GGG - chr2_1:12995573-12995592 Msa0196020:intron 35.0%
!!! TGCAGAAGCATTTTAGAATG+AGG - chr2_1:12995621-12995640 Msa0196020:intron 35.0%
!!! AAGCATTTTAGAATGAGGAG+TGG - chr2_1:12995626-12995645 Msa0196020:intron 35.0%
!!! AGCATTTTAGAATGAGGAGT+GGG - chr2_1:12995627-12995646 Msa0196020:intron 35.0%
! TAGGAAAGGGGTGTAAAATT+GGG - chr2_1:12995688-12995707 Msa0196020:intron 35.0%
TTTACAGTTTGACACCACAA+GGG + chr2_1:12995951-12995970 None:intergenic 35.0%
ACTCTGAATACAATGACGAT+GGG + chr2_1:12996235-12996254 None:intergenic 35.0%
AACTCTGAATACAATGACGA+TGG + chr2_1:12996236-12996255 None:intergenic 35.0%
TAAAACTGAGGTTTGCCATA+TGG - chr2_1:12996285-12996304 Msa0196020:intron 35.0%
ACTAGAATTCTCCAAAGTCA+GGG - chr2_1:12996339-12996358 Msa0196020:intron 35.0%
!! AAACGGATTCTCTGACTTTT+GGG + chr2_1:12996376-12996395 None:intergenic 35.0%
AGAATCCGTTTCCGTAAAAT+TGG - chr2_1:12996385-12996404 Msa0196020:intron 35.0%
!! TATATGACACAGAAGGTGTT+GGG - chr2_1:12996525-12996544 Msa0196020:intron 35.0%
TTCACGTAATGTAATTGCTC+TGG - chr2_1:12996713-12996732 Msa0196020:intron 35.0%
! TCTGGTTCATTTGCAAAAGT+TGG - chr2_1:12996731-12996750 Msa0196020:intron 35.0%
TGTGTGTGAAACCACAATTT+CGG + chr2_1:12997021-12997040 None:intergenic 35.0%
ACATATTGGACATATCAAGC+TGG - chr2_1:12997078-12997097 Msa0196020:intron 35.0%
AGTATCTTCTTTATGGCTCT+AGG - chr2_1:12997145-12997164 Msa0196020:intron 35.0%
AATAGCTAATTGTTGGGTGA+AGG + chr2_1:12997172-12997191 None:intergenic 35.0%
!! ATTGATGCTGTGTGTTTTTG+CGG - chr2_1:12997193-12997212 Msa0196020:intron 35.0%
CTCATTGTGAAGGAATTACT+TGG - chr2_1:12997455-12997474 Msa0196020:intron 35.0%
TATCAACCAGGGTCTAAATA+AGG - chr2_1:12997521-12997540 Msa0196020:intron 35.0%
AGTGTCAATAGGTTTACAGT+GGG - chr2_1:12997587-12997606 Msa0196020:intron 35.0%
! GGTCTTGTGAAGGAATTATT+GGG - chr2_1:12997608-12997627 Msa0196020:intron 35.0%
TTTAGATCTAGGCAGATACA+GGG + chr2_1:12997661-12997680 None:intergenic 35.0%
ATTTAGATCTAGGCAGATAC+AGG + chr2_1:12997662-12997681 None:intergenic 35.0%
CATCAAACTATGACCAGATT+AGG + chr2_1:12997694-12997713 None:intergenic 35.0%
GAGTGTCAATAGGTTTACAA+TGG - chr2_1:12997727-12997746 Msa0196020:intron 35.0%
GAGTACATCATTGGAACAAA+TGG + chr2_1:12997951-12997970 None:intergenic 35.0%
CTAACAAAAACTTGCCATAG+TGG + chr2_1:12998072-12998091 None:intergenic 35.0%
AGAAAAGGACAATGTTCTAC+AGG + chr2_1:12998267-12998286 None:intergenic 35.0%
GTTGTATGCCTAACAAGAAA+AGG + chr2_1:12998282-12998301 None:intergenic 35.0%
CCGGCTATTTAGTAAAGAAA+TGG + chr2_1:12998308-12998327 None:intergenic 35.0%
TTTATATCCTACCACAACCA+CGG + chr2_1:12998372-12998391 None:intergenic 35.0%
! CTCATCTAACCCGATTATTT+TGG + chr2_1:12998417-12998436 None:intergenic 35.0%
GTGCATAATTAGTAACTTGG+AGG + chr2_1:12998569-12998588 None:intergenic 35.0%
! CAGAATTGTTGATAAGTCTG+TGG - chr2_1:12998634-12998653 Msa0196020:intron 35.0%
CTAGCACTCACTTTCTTATT+TGG - chr2_1:12998880-12998899 Msa0196020:intron 35.0%
CTTATTGGGTGAAAACAATG+TGG + chr2_1:12998962-12998981 None:intergenic 35.0%
! CACAATACAAGCTAGCTTAA+AGG - chr2_1:12999046-12999065 Msa0196020:intron 35.0%
ACAGCTAAACTAGTAAACCT+AGG + chr2_1:12999118-12999137 None:intergenic 35.0%
!! CAATGTCTATTGGTTTGAGT+AGG + chr2_1:12999499-12999518 None:intergenic 35.0%
ATGATCTGTTTCAGAAGTTG+TGG - chr2_1:12999594-12999613 Msa0196020:CDS 35.0%
! ACTTGAAGATATGCTCTGAA+TGG - chr2_1:12999644-12999663 Msa0196020:CDS 35.0%
! GCTCAAAGCATTAAAATCAG+AGG + chr2_1:12999680-12999699 None:intergenic 35.0%
!! CTGATTTTAATGCTTTGAGC+AGG - chr2_1:12999680-12999699 Msa0196020:CDS 35.0%
TTAAACCATTGCCATTCTCA+TGG - chr2_1:12999778-12999797 Msa0196020:intron 35.0%
! AGTTGACTCCAATAAACATG+TGG - chr2_1:12999924-12999943 Msa0196020:CDS 35.0%
ACGATGAACCACATGTTTAT+TGG + chr2_1:12999935-12999954 None:intergenic 35.0%
! ATGATAGAGTCGGCAATTTT+AGG + chr2_1:12999985-13000004 None:intergenic 35.0%
AATTCAAGGGATGATAGAGT+CGG + chr2_1:12999995-13000014 None:intergenic 35.0%
GTTGAAGATGTAGAGGATGT+AGG + chr2_1:12992380-12992399 None:intergenic 40.0%
TGATGAATGCGAGGATGTAA+GGG + chr2_1:12992441-12992460 None:intergenic 40.0%
ATGATGAATGCGAGGATGTA+AGG + chr2_1:12992442-12992461 None:intergenic 40.0%
GCATTCATCATCTTCTCCAT+CGG - chr2_1:12992451-12992470 Msa0196020:three_prime_UTR 40.0%
TAAAGGGTTGAAGAAAGCGA+CGG - chr2_1:12992537-12992556 Msa0196020:three_prime_UTR 40.0%
AGAAACTTCCTTGGAAAGGT+GGG - chr2_1:12992608-12992627 Msa0196020:intron 40.0%
GACCTCAAACACTCATAATC+AGG + chr2_1:12992646-12992665 None:intergenic 40.0%
! AGTGTTTGAGGTCTGAGTTA+AGG - chr2_1:12992653-12992672 Msa0196020:intron 40.0%
GAGGTCTGAGTTAAGGAAAA+TGG - chr2_1:12992660-12992679 Msa0196020:intron 40.0%
AGGAAAATGGCTCCTGTTAA+TGG - chr2_1:12992673-12992692 Msa0196020:intron 40.0%
GGAAAATGGCTCCTGTTAAT+GGG - chr2_1:12992674-12992693 Msa0196020:intron 40.0%
!!! TTGCTTTTTAGAGCTCCTTG+TGG - chr2_1:12992706-12992725 Msa0196020:intron 40.0%
TTCTGACGCTTTCCTTTCTT+AGG + chr2_1:12992763-12992782 None:intergenic 40.0%
GCATGTCATTAATGACTGCA+GGG + chr2_1:12993272-12993291 None:intergenic 40.0%
TGCATGTCATTAATGACTGC+AGG + chr2_1:12993273-12993292 None:intergenic 40.0%
ATGCATTCGTAGATTGAGAC+TGG - chr2_1:12993296-12993315 Msa0196020:intron 40.0%
GGTAAAGAAAAGCTATCGGT+AGG - chr2_1:12993583-12993602 Msa0196020:intron 40.0%
TCGGTAGGGTTATTATCAAC+CGG - chr2_1:12993598-12993617 Msa0196020:intron 40.0%
ATGCAATCGTAGATTGAGAC+CGG - chr2_1:12993814-12993833 Msa0196020:intron 40.0%
GGTAAAGAAAAGCTATCGGT+AGG - chr2_1:12993583-12993602 Msa0196020:intron 40.0%
CGGTAGGGTTATTATCAATC+GGG - chr2_1:12994124-12994143 Msa0196020:intron 40.0%
! CTTGTTGTAGGTGAGGTTAT+TGG - chr2_1:12994271-12994290 Msa0196020:intron 40.0%
ACTGCGCATATTCATACAGT+AGG + chr2_1:12994464-12994483 None:intergenic 40.0%
AGCAAACAATAACACGAACC+CGG + chr2_1:12994504-12994523 None:intergenic 40.0%
! GGTTCGTGTTATTGTTTGCT+CGG - chr2_1:12994504-12994523 Msa0196020:intron 40.0%
AGATCTGGATAAACCCCTTA+TGG + chr2_1:12994758-12994777 None:intergenic 40.0%
ATAAGTGAGGGAAAGAGATC+TGG + chr2_1:12994773-12994792 None:intergenic 40.0%
ATCAATTTCGGCAGGAGTAA+AGG + chr2_1:12994803-12994822 None:intergenic 40.0%
GAAATCACATCAATTTCGGC+AGG + chr2_1:12994811-12994830 None:intergenic 40.0%
TTCAATGGTGATATGCCTTG+AGG - chr2_1:12994828-12994847 Msa0196020:intron 40.0%
TCAATGGTGATATGCCTTGA+GGG - chr2_1:12994829-12994848 Msa0196020:intron 40.0%
AAATCTGGATAAACCCCTCA+AGG + chr2_1:12994846-12994865 None:intergenic 40.0%
TGACATCCGAAATTCACAGA+AGG + chr2_1:12994956-12994975 None:intergenic 40.0%
TGTATCCACCATGATCTTTC+TGG - chr2_1:12995073-12995092 Msa0196020:intron 40.0%
GTATCCACCATGATCTTTCT+GGG - chr2_1:12995074-12995093 Msa0196020:intron 40.0%
TTAACCCAGAAAGATCATGG+TGG + chr2_1:12995081-12995100 None:intergenic 40.0%
CGTTACCTATTGCCAAATTG+TGG - chr2_1:12995507-12995526 Msa0196020:intron 40.0%
GAAATGTGAGTTCTGTTCCT+TGG - chr2_1:12995572-12995591 Msa0196020:intron 40.0%
AACATTGTTCACTCAGTCCT+AGG - chr2_1:12995669-12995688 Msa0196020:intron 40.0%
! CAATTTTACACCCCTTTCCT+AGG + chr2_1:12995689-12995708 None:intergenic 40.0%
! CTAGGAAAGGGGTGTAAAAT+TGG - chr2_1:12995687-12995706 Msa0196020:intron 40.0%
ATCCGGATTGTCTGATGTTA+TGG - chr2_1:12995711-12995730 Msa0196020:intron 40.0%
ACGTTGAAAATTAAGCCACG+TGG - chr2_1:12995783-12995802 Msa0196020:intron 40.0%
!!! GCAGCTCAGAGTTTTAAAGT+GGG + chr2_1:12995815-12995834 None:intergenic 40.0%
TCACTGTAGAAGACGATCTT+AGG + chr2_1:12995928-12995947 None:intergenic 40.0%
GTTTACAGTTTGACACCACA+AGG + chr2_1:12995952-12995971 None:intergenic 40.0%
TTCTCCACAAATCATGACAG+CGG + chr2_1:12996040-12996059 None:intergenic 40.0%
TACAGACTTGCGTAAAACTG+AGG - chr2_1:12996273-12996292 Msa0196020:intron 40.0%
GACTAGAATTCTCCAAAGTC+AGG - chr2_1:12996338-12996357 Msa0196020:intron 40.0%
!! GAAACGGATTCTCTGACTTT+TGG + chr2_1:12996377-12996396 None:intergenic 40.0%
ATACTATGATACTAGGCCAC+TGG - chr2_1:12996485-12996504 Msa0196020:intron 40.0%
TGAATTATTTCCTCTGCCAG+TGG + chr2_1:12996504-12996523 None:intergenic 40.0%
! GTATATGACACAGAAGGTGT+TGG - chr2_1:12996524-12996543 Msa0196020:intron 40.0%
ACATCTGACTAATCACGTAG+AGG + chr2_1:12996682-12996701 None:intergenic 40.0%
ACACACACACACACACATAT+TGG - chr2_1:12997064-12997083 Msa0196020:intron 40.0%
ATATCAAGCTGGAGTTTGAG+AGG - chr2_1:12997089-12997108 Msa0196020:intron 40.0%
!! AGTGATTGTGTTGACTGTTG+AGG + chr2_1:12997251-12997270 None:intergenic 40.0%
ATTCCTTCACAATGAGTGTG+TGG + chr2_1:12997451-12997470 None:intergenic 40.0%
TACTTGGTCTAGTGATCTTG+AGG - chr2_1:12997471-12997490 Msa0196020:intron 40.0%
! GTTGATACAAGAGACTAGTC+AGG + chr2_1:12997508-12997527 None:intergenic 40.0%
! ACTAGTCTCTTGTATCAACC+AGG - chr2_1:12997509-12997528 Msa0196020:intron 40.0%
CTAGTCTCTTGTATCAACCA+GGG - chr2_1:12997510-12997529 Msa0196020:intron 40.0%
AAACTATGACCAGATCAGGA+GGG + chr2_1:12997549-12997568 None:intergenic 40.0%
TAAACTATGACCAGATCAGG+AGG + chr2_1:12997550-12997569 None:intergenic 40.0%
CAGTAAACTATGACCAGATC+AGG + chr2_1:12997553-12997572 None:intergenic 40.0%
GAGTGTCAATAGGTTTACAG+TGG - chr2_1:12997586-12997605 Msa0196020:intron 40.0%
! GGGTCTTGTGAAGGAATTAT+TGG - chr2_1:12997607-12997626 Msa0196020:intron 40.0%
TATTGGGTCTAGTTATTGCG+AGG - chr2_1:12997624-12997643 Msa0196020:intron 40.0%
GAGGAGCCTAATTTAGATCT+AGG + chr2_1:12997672-12997691 None:intergenic 40.0%
AAATTAGGCTCCTCCTAATC+TGG - chr2_1:12997678-12997697 Msa0196020:intron 40.0%
CAAACTATGACCAGATTAGG+AGG + chr2_1:12997691-12997710 None:intergenic 40.0%
!! TAAATGCTTCCTTGGTCTTG+AGG + chr2_1:12997834-12997853 None:intergenic 40.0%
!! TCAAGACCAAGGAAGCATTT+AGG - chr2_1:12997833-12997852 Msa0196020:intron 40.0%
AGGAAACCTAAATGCTTCCT+TGG + chr2_1:12997842-12997861 None:intergenic 40.0%
TAGTGGCAATTATACAGCAC+TGG + chr2_1:12998055-12998074 None:intergenic 40.0%
GTGCTGTATAATTGCCACTA+TGG - chr2_1:12998055-12998074 Msa0196020:intron 40.0%
TTATATCCTACCACAACCAC+GGG + chr2_1:12998371-12998390 None:intergenic 40.0%
!! GTCTATTGGTTTGAGTAGGA+AGG + chr2_1:12999495-12999514 None:intergenic 40.0%
ACACCCAATGCAACTCTTAA+TGG - chr2_1:12999706-12999725 Msa0196020:CDS 40.0%
CCTCCATTAAGAGTTGCATT+GGG + chr2_1:12999712-12999731 None:intergenic 40.0%
TCCTCCATTAAGAGTTGCAT+TGG + chr2_1:12999713-12999732 None:intergenic 40.0%
AATGCAACTCTTAATGGAGG+AGG - chr2_1:12999712-12999731 Msa0196020:CDS 40.0%
AGTAACCATGAGAATGGCAA+TGG + chr2_1:12999786-12999805 None:intergenic 40.0%
TGTAGAGGATGTAGGAAGAG+AGG + chr2_1:12992372-12992391 None:intergenic 45.0%
AGAGGGAGTTGAAGATGTAG+AGG + chr2_1:12992387-12992406 None:intergenic 45.0%
AATGCGAGGATGTAAGGGAT+GGG + chr2_1:12992436-12992455 None:intergenic 45.0%
TGGAGAAGATGATGAATGCG+AGG + chr2_1:12992450-12992469 None:intergenic 45.0%
!! TTCTCCATCGGTTTCGTCTT+CGG - chr2_1:12992463-12992482 Msa0196020:three_prime_UTR 45.0%
AAAACCGAAGACGAAACCGA+TGG + chr2_1:12992470-12992489 None:intergenic 45.0%
GAGAGATTAGGGTTAGGGTT+TGG - chr2_1:12992577-12992596 Msa0196020:exon 45.0%
GAGAAACTTCCTTGGAAAGG+TGG - chr2_1:12992607-12992626 Msa0196020:intron 45.0%
TTAGCAACAGGACAACCACA+AGG + chr2_1:12992724-12992743 None:intergenic 45.0%
GAAGCTTCAAGCTTAGCAAC+AGG + chr2_1:12992736-12992755 None:intergenic 45.0%
GTTGCTAAGCTTGAAGCTTC+TGG - chr2_1:12992736-12992755 Msa0196020:intron 45.0%
GAAGCTTCTGGTCCTAAGAA+AGG - chr2_1:12992748-12992767 Msa0196020:intron 45.0%
!! AGAAAGGAAAGCGTCAGAAG+AGG - chr2_1:12992764-12992783 Msa0196020:intron 45.0%
ACAACAAGCAGTAGAACACG+TGG + chr2_1:12993216-12993235 None:intergenic 45.0%
!! CGTGTTCTACTGCTTGTTGT+AGG - chr2_1:12993216-12993235 Msa0196020:intron 45.0%
! CTTGTTGTAGGCGAGGTTAT+TGG - chr2_1:12993228-12993247 Msa0196020:intron 45.0%
GAGGTTATTGGAACCTGGAT+TGG - chr2_1:12993240-12993259 Msa0196020:intron 45.0%
! GTTATTGGAACCTGGATTGG+TGG - chr2_1:12993243-12993262 Msa0196020:intron 45.0%
TTGGGCTGTCCAATCTTGAT+CGG - chr2_1:12993373-12993392 Msa0196020:intron 45.0%
CAATCTTGATCGGACGATTG+CGG - chr2_1:12993383-12993402 Msa0196020:intron 45.0%
CTGCGCACATTCATACAGTT+GGG + chr2_1:12993413-12993432 None:intergenic 45.0%
ACTGCGCACATTCATACAGT+TGG + chr2_1:12993414-12993433 None:intergenic 45.0%
CGGTAGGGTTATTATCAACC+GGG - chr2_1:12993599-12993618 Msa0196020:intron 45.0%
TGTACCACAACAAGTCAACC+CGG + chr2_1:12993620-12993639 None:intergenic 45.0%
ACAACAAGCAGTAGAACACG+TGG + chr2_1:12993216-12993235 None:intergenic 45.0%
!! CGTGTTCTACTGCTTGTTGT+AGG - chr2_1:12993216-12993235 Msa0196020:intron 45.0%
! CTTGTTGTAGGCGAGGTTAT+TGG - chr2_1:12993228-12993247 Msa0196020:intron 45.0%
! AAATCACCGAGTTTGAGGTC+CGG + chr2_1:12993845-12993864 None:intergenic 45.0%
CGTGATCGTCCAATCAAGAT+CGG + chr2_1:12993911-12993930 None:intergenic 45.0%
CGATCTTGATTGGACGATCA+CGG - chr2_1:12993909-12993928 Msa0196020:intron 45.0%
CTGCGCACATTCATACAGTT+AGG + chr2_1:12993413-12993432 None:intergenic 45.0%
!! TCAATCGGGTTGACTTGTTG+TGG - chr2_1:12994138-12994157 Msa0196020:intron 45.0%
!! CAATCGGGTTGACTTGTTGT+GGG - chr2_1:12994139-12994158 Msa0196020:intron 45.0%
TGTGTTCCCTCTTTCTTGGT+GGG - chr2_1:12994208-12994227 Msa0196020:intron 45.0%
ACAACAAGCAGTAGAACACG+TGG + chr2_1:12993216-12993235 None:intergenic 45.0%
!! CGTGTTCTACTGCTTGTTGT+AGG - chr2_1:12993216-12993235 Msa0196020:intron 45.0%
!! TCTACTGCTTGTTGTAGGTG+AGG - chr2_1:12994264-12994283 Msa0196020:intron 45.0%
TAGGTGAGGTTATTGGAACC+TGG - chr2_1:12994278-12994297 Msa0196020:intron 45.0%
GAGGTTATTGGAACCTGGAT+TGG - chr2_1:12993240-12993259 Msa0196020:intron 45.0%
! GTTATTGGAACCTGGATTGG+CGG - chr2_1:12993243-12993262 Msa0196020:intron 45.0%
CGTGATCGTCCAATCAAGAT+CGG + chr2_1:12993911-12993930 None:intergenic 45.0%
TGAATATGCGCAGTCAGCAA+CGG - chr2_1:12994470-12994489 Msa0196020:intron 45.0%
CAATGGTGATATGCCTTGAG+GGG - chr2_1:12994830-12994849 Msa0196020:intron 45.0%
CCTCCAAAGTGAGCTTCATA+AGG + chr2_1:12995144-12995163 None:intergenic 45.0%
CCTTATGAAGCTCACTTTGG+AGG - chr2_1:12995141-12995160 Msa0196020:intron 45.0%
TAGGTAACGAACAACCTCAC+AGG + chr2_1:12995496-12995515 None:intergenic 45.0%
GGACTGAGTGAACAATGTTC+AGG + chr2_1:12995668-12995687 None:intergenic 45.0%
TGTTCACTCAGTCCTAGGAA+AGG - chr2_1:12995674-12995693 Msa0196020:intron 45.0%
GTTCACTCAGTCCTAGGAAA+GGG - chr2_1:12995675-12995694 Msa0196020:intron 45.0%
TTCACTCAGTCCTAGGAAAG+GGG - chr2_1:12995676-12995695 Msa0196020:intron 45.0%
! AGGGGTGTAAAATTGGGATC+CGG - chr2_1:12995694-12995713 Msa0196020:intron 45.0%
CGCCATAACATCAGACAATC+CGG + chr2_1:12995716-12995735 None:intergenic 45.0%
CGGATTGTCTGATGTTATGG+CGG - chr2_1:12995714-12995733 Msa0196020:intron 45.0%
GGATTGTCTGATGTTATGGC+GGG - chr2_1:12995715-12995734 Msa0196020:intron 45.0%
!!! CGCAGCTCAGAGTTTTAAAG+TGG + chr2_1:12995816-12995835 None:intergenic 45.0%
!! CTTTAAAACTCTGAGCTGCG+TGG - chr2_1:12995816-12995835 Msa0196020:intron 45.0%
TTGTGGCGTACAACCTTCTA+TGG + chr2_1:12995878-12995897 None:intergenic 45.0%
ATCTTAGGACCAAACTGCAG+TGG + chr2_1:12995913-12995932 None:intergenic 45.0%
AGAAAATCTACTTCCGCCGT+CGG - chr2_1:12996056-12996075 Msa0196020:intron 45.0%
AATGACGATGGGTAGCTGAA+GGG + chr2_1:12996224-12996243 None:intergenic 45.0%
GCGTTCAGAACTTTGCCATA+TGG + chr2_1:12996303-12996322 None:intergenic 45.0%
!! TATGGCAAAGTTCTGAACGC+TGG - chr2_1:12996303-12996322 Msa0196020:intron 45.0%
TTGTGTAGCTGTCACATCCT+TGG + chr2_1:12997327-12997346 None:intergenic 45.0%
TCACCACACACTCATTGTGA+AGG - chr2_1:12997445-12997464 Msa0196020:intron 45.0%
! GTTTACAGTGGGTCTTGTGA+AGG - chr2_1:12997598-12997617 Msa0196020:intron 45.0%
ACTAAGCTACCTCAAGACCA+AGG - chr2_1:12997822-12997841 Msa0196020:intron 45.0%
TTGAGAAATGTACGCCGACA+AGG - chr2_1:12998437-12998456 Msa0196020:intron 45.0%
GAACAAATGACTGCACACTC+TGG - chr2_1:12998750-12998769 Msa0196020:intron 45.0%
TGGGACTCACTTCCAAAATG+TGG - chr2_1:12998933-12998952 Msa0196020:intron 45.0%
GGGACTCACTTCCAAAATGT+GGG - chr2_1:12998934-12998953 Msa0196020:intron 45.0%
! ACAATGTGGGTCCCACATTT+TGG + chr2_1:12998948-12998967 None:intergenic 45.0%
! TCACGAAGAGAAGGCATGTT+AGG + chr2_1:12999175-12999194 None:intergenic 45.0%
ACCTTACATGTGTGTAGCCT+AGG - chr2_1:12999210-12999229 Msa0196020:intron 45.0%
ACCTAGGCTACACACATGTA+AGG + chr2_1:12999214-12999233 None:intergenic 45.0%
TTACATGTGTGTAGCCTAGG+TGG - chr2_1:12999213-12999232 Msa0196020:intron 45.0%
CCCAATGCAACTCTTAATGG+AGG - chr2_1:12999709-12999728 Msa0196020:CDS 45.0%
TCTTGGGCAGTTCAGATACA+AGG + chr2_1:12999874-12999893 None:intergenic 45.0%
AGAGGATGTAGGAAGAGAGG+AGG + chr2_1:12992369-12992388 None:intergenic 50.0%
ATGCGAGGATGTAAGGGATG+GGG + chr2_1:12992435-12992454 None:intergenic 50.0%
GAATGCGAGGATGTAAGGGA+TGG + chr2_1:12992437-12992456 None:intergenic 50.0%
! TGTGAGCGGAAAGGGTGTAA+AGG - chr2_1:12992520-12992539 Msa0196020:three_prime_UTR 50.0%
! GTGAGCGGAAAGGGTGTAAA+GGG - chr2_1:12992521-12992540 Msa0196020:three_prime_UTR 50.0%
CTTGGAAAGGTGGGAGTGAA+GGG - chr2_1:12992617-12992636 Msa0196020:intron 50.0%
!! GGAAAGCGTCAGAAGAGGTT+AGG - chr2_1:12992769-12992788 Msa0196020:intron 50.0%
GAACCGTGTGCTCTCTTTCT+TGG - chr2_1:12993161-12993180 Msa0196020:intron 50.0%
!! TCTACTGCTTGTTGTAGGCG+AGG - chr2_1:12993221-12993240 Msa0196020:intron 50.0%
TAGGCGAGGTTATTGGAACC+TGG - chr2_1:12993235-12993254 Msa0196020:intron 50.0%
CGCAATCGTCCGATCAAGAT+TGG + chr2_1:12993385-12993404 None:intergenic 50.0%
TGAATGTGCGCAGTCTGCAA+CGG - chr2_1:12993420-12993439 Msa0196020:intron 50.0%
!! TCAACCGGGTTGACTTGTTG+TGG - chr2_1:12993613-12993632 Msa0196020:intron 50.0%
TGCGTTCCCTCTTTCTTGGT+GGG - chr2_1:12993683-12993702 Msa0196020:intron 50.0%
CAATCCCCCACCAAGAAAGA+GGG + chr2_1:12993692-12993711 None:intergenic 50.0%
ACAATCCCCCACCAAGAAAG+AGG + chr2_1:12993693-12993712 None:intergenic 50.0%
!! TCTACTGCTTGTTGTAGGCG+AGG - chr2_1:12993221-12993240 Msa0196020:intron 50.0%
TAGGCGAGGTTATTGGAACC+CGG - chr2_1:12993235-12993254 Msa0196020:intron 50.0%
GAGGTTATTGGAACCCGGAT+TGG - chr2_1:12993758-12993777 Msa0196020:intron 50.0%
! GTTATTGGAACCCGGATTGG+CGG - chr2_1:12993761-12993780 Msa0196020:intron 50.0%
TAGATTGAGACCGGACAGTC+CGG - chr2_1:12993823-12993842 Msa0196020:intron 50.0%
TTGGGCTGTCCGATCTTGAT+TGG - chr2_1:12993899-12993918 Msa0196020:intron 50.0%
TGAATGTGCGCAGTCAGCAA+CGG - chr2_1:12993946-12993965 Msa0196020:intron 50.0%
GAGCTGTGTTCCCTCTTTCT+TGG - chr2_1:12994204-12994223 Msa0196020:intron 50.0%
CTGTGTTCCCTCTTTCTTGG+TGG - chr2_1:12994207-12994226 Msa0196020:intron 50.0%
GTGTTCCCTCTTTCTTGGTG+GGG - chr2_1:12994209-12994228 Msa0196020:intron 50.0%
TGTTCCCTCTTTCTTGGTGG+GGG - chr2_1:12994210-12994229 Msa0196020:intron 50.0%
CAATCCCCCACCAAGAAAGA+GGG + chr2_1:12993692-12993711 None:intergenic 50.0%
ACAATCCCCCACCAAGAAAG+AGG + chr2_1:12993693-12993712 None:intergenic 50.0%
! GTGTGTCGTTAGTGACTGCA+GGG + chr2_1:12994315-12994334 None:intergenic 50.0%
! TGTGTGTCGTTAGTGACTGC+AGG + chr2_1:12994316-12994335 None:intergenic 50.0%
TTGGGCTGTCCGATCTTGAT+TGG - chr2_1:12993899-12993918 Msa0196020:intron 50.0%
! TGGTGGATACATCCGTACTC+AGG + chr2_1:12995064-12995083 None:intergenic 50.0%
! ATGAGGAGTGGGCTTAGACT+AGG - chr2_1:12995638-12995657 Msa0196020:intron 50.0%
AACGGGCAAACCTTTCCCAA+AGG + chr2_1:12995752-12995771 None:intergenic 50.0%
TAAAGTGGGTCAGTTCCACG+TGG + chr2_1:12995801-12995820 None:intergenic 50.0%
TAAAACTCTGAGCTGCGTGG+TGG - chr2_1:12995819-12995838 Msa0196020:intron 50.0%
TATGGCTAGTGTGACCTCCA+TGG + chr2_1:12995860-12995879 None:intergenic 50.0%
GAGGTCACACTAGCCATAGA+AGG - chr2_1:12995862-12995881 Msa0196020:intron 50.0%
GTCTTCTACAGTGACCCTTG+TGG - chr2_1:12995934-12995953 Msa0196020:intron 50.0%
TCCACAAATCATGACAGCGG+AGG + chr2_1:12996037-12996056 None:intergenic 50.0%
! TAGGGAGAGATCTGAGATGG+TGG + chr2_1:12996097-12996116 None:intergenic 50.0%
GTGTAGGGAGAGATCTGAGA+TGG + chr2_1:12996100-12996119 None:intergenic 50.0%
CTCTCCCTACACTTCGTACT+CGG - chr2_1:12996108-12996127 Msa0196020:intron 50.0%
ACCACCGAGTACGAAGTGTA+GGG + chr2_1:12996115-12996134 None:intergenic 50.0%
!! GGTGGTGTTGCATGGATTTG+TGG - chr2_1:12996129-12996148 Msa0196020:intron 50.0%
ATGACGATGGGTAGCTGAAG+GGG + chr2_1:12996223-12996242 None:intergenic 50.0%
CAATGACGATGGGTAGCTGA+AGG + chr2_1:12996225-12996244 None:intergenic 50.0%
CTGGGCTACGTAAAGCATGT+AGG - chr2_1:12996548-12996567 Msa0196020:intron 50.0%
!! AGGGAGCCTTATTTAGACCC+TGG + chr2_1:12997530-12997549 None:intergenic 50.0%
AATAAGGCTCCCTCCTGATC+TGG - chr2_1:12997537-12997556 Msa0196020:intron 50.0%
!! ATGATAAAAAGAGGCGCCCG+TGG - chr2_1:12998352-12998371 Msa0196020:intron 50.0%
TCAGTCCCACCACTTCATGT+GGG - chr2_1:12998914-12998933 Msa0196020:intron 50.0%
TGAGTCCCACATGAAGTGGT+GGG + chr2_1:12998922-12998941 None:intergenic 50.0%
GAAGTGAGTCCCACATGAAG+TGG + chr2_1:12998926-12998945 None:intergenic 50.0%
GCAAAAGGCTCACGAAGAGA+AGG + chr2_1:12999184-12999203 None:intergenic 50.0%
AGCCTAGGTGGATAGCATAG+AGG - chr2_1:12999225-12999244 Msa0196020:intron 50.0%
GCCTAGGTGGATAGCATAGA+GGG - chr2_1:12999226-12999245 Msa0196020:intron 50.0%
CACGGCCTATGGAAGAAGTA+GGG - chr2_1:12999257-12999276 Msa0196020:intron 50.0%
ACGGCCTATGGAAGAAGTAG+GGG - chr2_1:12999258-12999277 Msa0196020:intron 50.0%
TATGGAAGAAGTAGGGGTGG+CGG - chr2_1:12999264-12999283 Msa0196020:intron 50.0%
TATGTGACATGCCTACGCAG+TGG + chr2_1:12999755-12999774 None:intergenic 50.0%
GGGCAGTTCAGATACAAGGA+AGG + chr2_1:12999870-12999889 None:intergenic 50.0%
AGAGAACGAGGAGGAGGATG+AGG + chr2_1:12992333-12992352 None:intergenic 55.0%
CTCCTCCTCGTTCTCTTCTC+CGG - chr2_1:12992337-12992356 Msa0196020:three_prime_UTR 55.0%
GGATGGGGAGAGAGAAGGAA+GGG + chr2_1:12992420-12992439 None:intergenic 55.0%
GTAAGGGATGGGGAGAGAGA+AGG + chr2_1:12992425-12992444 None:intergenic 55.0%
TATGTTGCGGTGCTCGATCG+AGG - chr2_1:12992494-12992513 Msa0196020:three_prime_UTR 55.0%
! CTCGATCGAGGAAGTGTGAG+CGG - chr2_1:12992506-12992525 Msa0196020:three_prime_UTR 55.0%
! TCGAGGAAGTGTGAGCGGAA+AGG - chr2_1:12992511-12992530 Msa0196020:three_prime_UTR 55.0%
! CGAGGAAGTGTGAGCGGAAA+GGG - chr2_1:12992512-12992531 Msa0196020:three_prime_UTR 55.0%
CCTTCACTCCCACCTTTCCA+AGG + chr2_1:12992619-12992638 None:intergenic 55.0%
CCTTGGAAAGGTGGGAGTGA+AGG - chr2_1:12992616-12992635 Msa0196020:intron 55.0%
! CCGCCAAGAAAGAGAGCACA+CGG + chr2_1:12993167-12993186 None:intergenic 55.0%
CCGTGTGCTCTCTTTCTTGG+CGG - chr2_1:12993164-12993183 Msa0196020:intron 55.0%
CGTGTGCTCTCTTTCTTGGC+GGG - chr2_1:12993165-12993184 Msa0196020:intron 55.0%
GTGTGCTCTCTTTCTTGGCG+GGG - chr2_1:12993166-12993185 Msa0196020:intron 55.0%
TGTGCTCTCTTTCTTGGCGG+GGG - chr2_1:12993167-12993186 Msa0196020:intron 55.0%
TGCAGGGAATCCACCAATCC+AGG + chr2_1:12993256-12993275 None:intergenic 55.0%
GAGCTGCGTTCCCTCTTTCT+TGG - chr2_1:12993679-12993698 Msa0196020:intron 55.0%
CTGCGTTCCCTCTTTCTTGG+TGG - chr2_1:12993682-12993701 Msa0196020:intron 55.0%
GCGTTCCCTCTTTCTTGGTG+GGG - chr2_1:12993684-12993703 Msa0196020:intron 55.0%
CGTTCCCTCTTTCTTGGTGG+GGG - chr2_1:12993685-12993704 Msa0196020:intron 55.0%
! AGTTTGAGGTCCGGACTGTC+CGG + chr2_1:12993836-12993855 None:intergenic 55.0%
GACAGTCCGGACCTCAAACT+CGG - chr2_1:12993836-12993855 Msa0196020:intron 55.0%
GTCAGCAACGGCAGTGAATC+CGG - chr2_1:12994482-12994501 Msa0196020:intron 55.0%
TCAGCAACGGCAGTGAATCC+GGG - chr2_1:12994483-12994502 Msa0196020:intron 55.0%
! ACGTCACCTGCCTTTGGGAA+AGG - chr2_1:12995739-12995758 Msa0196020:intron 55.0%
GGCAAACCTTTCCCAAAGGC+AGG + chr2_1:12995748-12995767 None:intergenic 55.0%
!! AGTGGCTGGTTTGGCAGTTG+TGG + chr2_1:12995895-12995914 None:intergenic 55.0%
! CCAAACTGCAGTGGCTGGTT+TGG + chr2_1:12995904-12995923 None:intergenic 55.0%
CCAAACCAGCCACTGCAGTT+TGG - chr2_1:12995901-12995920 Msa0196020:intron 55.0%
TAGGACCAAACTGCAGTGGC+TGG + chr2_1:12995909-12995928 None:intergenic 55.0%
CAAATCATGACAGCGGAGGC+AGG + chr2_1:12996033-12996052 None:intergenic 55.0%
GCCTCCGCTGTCATGATTTG+TGG - chr2_1:12996033-12996052 Msa0196020:intron 55.0%
! GGAGAGATCTGAGATGGTGG+CGG + chr2_1:12996094-12996113 None:intergenic 55.0%
TCCCTACACTTCGTACTCGG+TGG - chr2_1:12996111-12996130 Msa0196020:intron 55.0%
CACCACCGAGTACGAAGTGT+AGG + chr2_1:12996116-12996135 None:intergenic 55.0%
!! TCGTACTCGGTGGTGTTGCA+TGG - chr2_1:12996121-12996140 Msa0196020:intron 55.0%
GTTGCATGGATTTGTGGCCG+TGG - chr2_1:12996135-12996154 Msa0196020:intron 55.0%
AACGTCGACGTTGCTCACCA+CGG + chr2_1:12996155-12996174 None:intergenic 55.0%
TGAACCACCGGTCATGCCAA+CGG + chr2_1:12996200-12996219 None:intergenic 55.0%
TAGCTGAAGGGGTGAACCAC+CGG + chr2_1:12996212-12996231 None:intergenic 55.0%
CTCCAAAGTCAGGGTGCAGT+TGG - chr2_1:12996348-12996367 Msa0196020:intron 55.0%
CACCAACTGCACCCTGACTT+TGG + chr2_1:12996353-12996372 None:intergenic 55.0%
TGATACTAGGCCACTGGCAG+AGG - chr2_1:12996491-12996510 Msa0196020:intron 55.0%
!! TGACACAGAAGGTGTTGGGC+TGG - chr2_1:12996529-12996548 Msa0196020:intron 55.0%
!! GACACAGAAGGTGTTGGGCT+GGG - chr2_1:12996530-12996549 Msa0196020:intron 55.0%
TGGGTGTGTGTGTGTGTGTG+TGG - chr2_1:12997367-12997386 Msa0196020:intron 55.0%
GTCAGTCCCACCACTTCATG+TGG - chr2_1:12998913-12998932 Msa0196020:intron 55.0%
GTGAGTCCCACATGAAGTGG+TGG + chr2_1:12998923-12998942 None:intergenic 55.0%
GCCCTCTATGCTATCCACCT+AGG + chr2_1:12999230-12999249 None:intergenic 55.0%
GCATAGAGGGCCACATTCCA+CGG - chr2_1:12999239-12999258 Msa0196020:intron 55.0%
CTTCCATAGGCCGTGGAATG+TGG + chr2_1:12999252-12999271 None:intergenic 55.0%
CCTACTTCTTCCATAGGCCG+TGG + chr2_1:12999259-12999278 None:intergenic 55.0%
CCACGGCCTATGGAAGAAGT+AGG - chr2_1:12999256-12999275 Msa0196020:intron 55.0%
GCCTATGGAAGAAGTAGGGG+TGG - chr2_1:12999261-12999280 Msa0196020:intron 55.0%
GCCACCCCTACTTCTTCCAT+AGG + chr2_1:12999265-12999284 None:intergenic 55.0%
ATGGAAGAAGTAGGGGTGGC+GGG - chr2_1:12999265-12999284 Msa0196020:intron 55.0%
! GAGAGCTTTGTCCCCCAAAG+TGG + chr2_1:12999411-12999430 None:intergenic 55.0%
TCGTTGATCCACCACTGCGT+AGG - chr2_1:12999741-12999760 Msa0196020:CDS 55.0%
GAGGAGGATGAGGAGGTCGA+GGG + chr2_1:12992323-12992342 None:intergenic 60.0%
GAACGAGGAGGAGGATGAGG+AGG + chr2_1:12992330-12992349 None:intergenic 60.0%
CGGAGAAGAGAACGAGGAGG+AGG + chr2_1:12992339-12992358 None:intergenic 60.0%
GGAAGGGAGGAGGAGAGAGA+GGG + chr2_1:12992404-12992423 None:intergenic 60.0%
AGGAAGGGAGGAGGAGAGAG+AGG + chr2_1:12992405-12992424 None:intergenic 60.0%
GGAGAGAGAAGGAAGGGAGG+AGG + chr2_1:12992414-12992433 None:intergenic 60.0%
TGGGGAGAGAGAAGGAAGGG+AGG + chr2_1:12992417-12992436 None:intergenic 60.0%
GGGATGGGGAGAGAGAAGGA+AGG + chr2_1:12992421-12992440 None:intergenic 60.0%
GTCTGCAACGGCAGGGAATC+CGG - chr2_1:12993432-12993451 Msa0196020:intron 60.0%
TGCAGCGAATCCGCCAATCC+GGG + chr2_1:12993774-12993793 None:intergenic 60.0%
CTGCAGCGAATCCGCCAATC+CGG + chr2_1:12993775-12993794 None:intergenic 60.0%
TGCAGGGAATCCGCCAATCC+AGG + chr2_1:12994299-12994318 None:intergenic 60.0%
CGGGAACGTCACCTGCCTTT+GGG - chr2_1:12995734-12995753 Msa0196020:intron 60.0%
! AGCTGCGTGGTGGAGACGAA+GGG - chr2_1:12995829-12995848 Msa0196020:intron 60.0%
GGAGACGAAGGGTTGTGCCA+TGG - chr2_1:12995840-12995859 Msa0196020:intron 60.0%
GACGAAGGGTTGTGCCATGG+AGG - chr2_1:12995843-12995862 Msa0196020:intron 60.0%
GGTGAGCAACGTCGACGTTG+TGG - chr2_1:12996156-12996175 Msa0196020:intron 60.0%
GAGCAACGTCGACGTTGTGG+TGG - chr2_1:12996159-12996178 Msa0196020:intron 60.0%
AAGGCCTCCGTTGGCATGAC+CGG - chr2_1:12996190-12996209 Msa0196020:intron 60.0%
!! AAAAGAGGCGCCCGTGGTTG+TGG - chr2_1:12998358-12998377 Msa0196020:intron 60.0%
GTGACATGCCTACGCAGTGG+TGG + chr2_1:12999752-12999771 None:intergenic 60.0%
GATGAGGAGGTCGAGGGTGG+CGG + chr2_1:12992317-12992336 None:intergenic 65.0%
GAGGATGAGGAGGTCGAGGG+TGG + chr2_1:12992320-12992339 None:intergenic 65.0%
GGAGGAGGATGAGGAGGTCG+AGG + chr2_1:12992324-12992343 None:intergenic 65.0%
CGCCGGAGAAGAGAACGAGG+AGG + chr2_1:12992342-12992361 None:intergenic 65.0%
ACGCGCCGGAGAAGAGAACG+AGG + chr2_1:12992345-12992364 None:intergenic 65.0%
GGAAGAGAGGAGGAACGCGC+CGG + chr2_1:12992359-12992378 None:intergenic 65.0%
TGTGCGCAGTCTGCAACGGC+AGG - chr2_1:12993424-12993443 Msa0196020:intron 65.0%
GTGCGCAGTCTGCAACGGCA+GGG - chr2_1:12993425-12993444 Msa0196020:intron 65.0%
TGTGCGCAGTCAGCAACGGC+AGG - chr2_1:12993950-12993969 Msa0196020:intron 65.0%
GTGCGCAGTCAGCAACGGCA+GGG - chr2_1:12993951-12993970 Msa0196020:intron 65.0%
GCGGGAACGTCACCTGCCTT+TGG - chr2_1:12995733-12995752 Msa0196020:intron 65.0%
! GAGCTGCGTGGTGGAGACGA+AGG - chr2_1:12995828-12995847 Msa0196020:intron 65.0%
!! GAGTTGCGAAGTGCCGACGG+CGG + chr2_1:12996072-12996091 None:intergenic 65.0%
!! GCGGAGTTGCGAAGTGCCGA+CGG + chr2_1:12996075-12996094 None:intergenic 65.0%
! GTCGACGTTGTGGTGGCGTG+CGG - chr2_1:12996166-12996185 Msa0196020:intron 65.0%
! TCGACGTTGTGGTGGCGTGC+GGG - chr2_1:12996167-12996186 Msa0196020:intron 65.0%
ACCACCGGTCATGCCAACGG+AGG + chr2_1:12996197-12996216 None:intergenic 65.0%
GGGCCACATTCCACGGCCTA+TGG - chr2_1:12999246-12999265 Msa0196020:intron 65.0%
!! GAGGTCGAGGGTGGCGGATG+GGG + chr2_1:12992311-12992330 None:intergenic 70.0%
!! GGAGGTCGAGGGTGGCGGAT+GGG + chr2_1:12992312-12992331 None:intergenic 70.0%
!! AGGAGGTCGAGGGTGGCGGA+TGG + chr2_1:12992313-12992332 None:intergenic 70.0%
! CGTTGTGGTGGCGTGCGGGA+AGG - chr2_1:12996171-12996190 Msa0196020:intron 70.0%
GCCTCCGTTGGCATGACCGG+TGG - chr2_1:12996193-12996212 Msa0196020:intron 70.0%
! GAGGCGCCCGTGGTTGTGGT+AGG - chr2_1:12998362-12998381 Msa0196020:intron 70.0%
GCGTGCGGGAAGGCCTCCGT+TGG - chr2_1:12996181-12996200 Msa0196020:intron 75.0%
Chromosome Type Strat End Strand Name
chr2_1 gene 12992305 13000022 12992305 ID=Msa0196020;Name=Msa0196020
chr2_1 mRNA 12992305 13000022 12992305 ID=Msa0196020-mRNA-1;Parent=Msa0196020;Name=Msa0196020-mRNA-1;_AED=0.06;_eAED=0.06;_QI=0|0.5|0.33|1|0|0|3|275|172
chr2_1 exon 12992305 12992625 12992305 ID=Msa0196020-mRNA-1:exon:5692;Parent=Msa0196020-mRNA-1
chr2_1 exon 12999542 12999785 12999542 ID=Msa0196020-mRNA-1:exon:5691;Parent=Msa0196020-mRNA-1
chr2_1 exon 12999794 13000022 12999794 ID=Msa0196020-mRNA-1:exon:5690;Parent=Msa0196020-mRNA-1
chr2_1 CDS 12999794 13000022 12999794 ID=Msa0196020-mRNA-1:cds;Parent=Msa0196020-mRNA-1
chr2_1 CDS 12999542 12999785 12999542 ID=Msa0196020-mRNA-1:cds;Parent=Msa0196020-mRNA-1
chr2_1 CDS 12992580 12992625 12992580 ID=Msa0196020-mRNA-1:cds;Parent=Msa0196020-mRNA-1
chr2_1 three_prime_UTR 12992305 12992579 12992305 ID=Msa0196020-mRNA-1:three_prime_utr;Parent=Msa0196020-mRNA-1
Gene Sequence

>Msa0196020

ATGCCCCATCCGCCACCCTCGACCTCCTCATCCTCCTCCTCGTTCTCTTCTCCGGCGCGTTCCTCCTCTCTTCCTACATCCTCTACATCTTCAACTCCCTCTCTCTCCTCCTCCCTTCCTTCTCTCTCCCCATCCCTTACATCCTCGCATTCATCATCTTCTCCATCGGTTTCGTCTTCGGTTTTGAGATATGTTGCGGTGCTCGATCGAGGAAGTGTGAGCGGAAAGGGGTTGAAGAAAGCGACGGAGTTTGATTTGAAGATAGAGAGATTAGGGTTAGGGTTTGGTGAATATGAGAAACTTCCTTGGAAAGGTGGGAGTGAAGGGAATCCTGATTATGAGTGTTTGAGGTCTGAGTTAAGGAAAATGGCTCCTGTTAATGGGAAAGCTCTTTTGCTTTTTAGAGCTCCTTGTGGTTGTCCTGTTGCTAAGCTTGAAGCTTCTGGTCCTAAGAAAGGAAAGCGTCAGAAGAGGTCTACACCCAATGCAACTCTTAATGGAGGAGGAGATCATCGTTGA
Protein sequence

>Msa0196020

MPHPPPSTSSSSSSFSSPARSSSLPTSSTSSTPSLSSSLPSLSPSLTSSHSSSSPSVSSSVLRYVAVLDRGSVSGKGLKKATEFDLKIERLGLGFGEYEKLPWKGGSEGNPDYECLRSELRKMAPVNGKALLLFRAPCGCPVAKLEASGPKKGKRQKRSTPNATLNGGGDHR*