Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1110620 | PNY06557.1 | 66.802 | 247 | 18 | 4 | 3 | 185 | 70 | 316 | 1.29e-99 | 300 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1110620 | sp|Q9LFG2|DAPF_ARATH | 56.904 | 239 | 47 | 3 | 3 | 185 | 124 | 362 | 2.08e-83 | 253 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1110620 | A0A1S2XPI4 | 69.456 | 239 | 17 | 3 | 3 | 185 | 125 | 363 | 2.98e-103 | 310 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0887990 | Msa1110620 | 0.801056 | 1.077942e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1110620 | MtrunA17_Chr7g0263141 | 67.782 | 239 | 21 | 3 | 3 | 185 | 123 | 361 | 3.83e-99 | 290 |
| Msa1110620 | MtrunA17_Chr7g0244401 | 44.025 | 159 | 27 | 4 | 3 | 123 | 51 | 185 | 8.73e-29 | 105 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1110620 | AT3G53580.1 | 56.904 | 239 | 47 | 3 | 3 | 185 | 124 | 362 | 2.11e-84 | 253 |
Find 50 sgRNAs with CRISPR-Local
Find 253 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCTCATCATGTTCAAATTT+TGG | 0.052675 | 7_3:-55718283 | None:intergenic |
| TCTCAGCTTTAGAGTTTATA+TGG | 0.188426 | 7_3:+55717259 | Msa1110620:intron |
| ACAACAGCATGATCCTTATT+TGG | 0.197612 | 7_3:-55717809 | None:intergenic |
| GATTCAGGTAAGAGTTGATA+TGG | 0.258967 | 7_3:+55717742 | Msa1110620:intron |
| TGCTAAATTATCTCCAAATA+AGG | 0.295607 | 7_3:+55717796 | Msa1110620:CDS |
| GCTTCCATGCACGCATCTTC+AGG | 0.329139 | 7_3:-55718823 | None:intergenic |
| GCAACTCTTGCTTGTGGAAC+TGG | 0.332464 | 7_3:+55718982 | Msa1110620:CDS |
| TCAGCAGAACTAGTGTATTA+TGG | 0.341701 | 7_3:+55720749 | Msa1110620:CDS |
| GCATTGAAGCTAGCAGAAAT+TGG | 0.388901 | 7_3:+55718259 | Msa1110620:intron |
| TTTCCATCCTCCAAGACTTC+AGG | 0.400513 | 7_3:-55717613 | None:intergenic |
| CTCAGCTTTAGAGTTTATAT+GGG | 0.422413 | 7_3:+55717260 | Msa1110620:intron |
| ACATCTGATGCTTTGAGAAT+CGG | 0.432841 | 7_3:-55717770 | None:intergenic |
| TCTTGAGGGTTGTGCCTGCC+AGG | 0.433990 | 7_3:+55719032 | Msa1110620:CDS |
| GTGGATTGTTCCTGAAGTCT+TGG | 0.437333 | 7_3:+55717603 | Msa1110620:CDS |
| CCACCCAGCACCAGTGTGTA+TGG | 0.439583 | 7_3:-55717584 | None:intergenic |
| ATTCAGGTAAGAGTTGATAT+GGG | 0.453761 | 7_3:+55717743 | Msa1110620:intron |
| TTCACCATACACACTGGTGC+TGG | 0.456646 | 7_3:+55717580 | Msa1110620:CDS |
| TTATTTGGAGATAATTTAGC+AGG | 0.480291 | 7_3:-55717794 | None:intergenic |
| CGATGTTGCAGCAGTTCTTG+AGG | 0.484459 | 7_3:+55719017 | Msa1110620:CDS |
| CTCAAGAACTGCTGCAACAT+CGG | 0.485000 | 7_3:-55719016 | None:intergenic |
| CGTGCATGGAAGCGAGGAGC+AGG | 0.486133 | 7_3:+55718833 | Msa1110620:CDS |
| TCAATCTGAAGAGGCCCTCC+TGG | 0.487728 | 7_3:-55720689 | None:intergenic |
| GAGGGCCTCTTCAGATTGAA+TGG | 0.489809 | 7_3:+55720693 | Msa1110620:CDS |
| AGAGTTTATATGGGAGGCAT+AGG | 0.496209 | 7_3:+55717269 | Msa1110620:intron |
| GATGTTGCAGCAGTTCTTGA+GGG | 0.497739 | 7_3:+55719018 | Msa1110620:CDS |
| TGACCTGTGTTAGTTCGTGC+AGG | 0.507211 | 7_3:-55718310 | None:intergenic |
| GATAATCGTGTCTATATGAC+AGG | 0.512417 | 7_3:+55720725 | Msa1110620:CDS |
| CAGTCAGTGCCATTGATACC+AGG | 0.518167 | 7_3:-55717064 | None:intergenic |
| GATTGTTCCTGAAGTCTTGG+AGG | 0.522553 | 7_3:+55717606 | Msa1110620:CDS |
| GCCTCTTCAGATTGAATGGA+AGG | 0.526321 | 7_3:+55720697 | Msa1110620:CDS |
| TCCTTCCATTCAATCTGAAG+AGG | 0.555683 | 7_3:-55720698 | None:intergenic |
| AGCTTTAGAGTTTATATGGG+AGG | 0.562079 | 7_3:+55717263 | Msa1110620:intron |
| GTTCCTGAAGTCTTGGAGGA+TGG | 0.562450 | 7_3:+55717610 | Msa1110620:CDS |
| TCACCATACACACTGGTGCT+GGG | 0.579978 | 7_3:+55717581 | Msa1110620:CDS |
| CTCACCTGAAGATGCGTGCA+TGG | 0.580821 | 7_3:+55718819 | Msa1110620:CDS |
| TATTAGCAAACTTACCTGGC+AGG | 0.584502 | 7_3:-55719046 | None:intergenic |
| TTCAGGTAAGAGTTGATATG+GGG | 0.591968 | 7_3:+55717744 | Msa1110620:intron |
| GCAGGAGCAACTCTTGCTTG+TGG | 0.602583 | 7_3:+55718976 | Msa1110620:intron |
| AACTGCACAGTTGATCTACC+AGG | 0.613033 | 7_3:+55720671 | Msa1110620:CDS |
| TGTAGTTTCACCATACACAC+TGG | 0.625967 | 7_3:+55717574 | Msa1110620:intron |
| AAGATGCGTGCATGGAAGCG+AGG | 0.626051 | 7_3:+55718827 | Msa1110620:CDS |
| GACCTGTGTTAGTTCGTGCA+GGG | 0.640530 | 7_3:-55718309 | None:intergenic |
| TTCCCTGCACGAACTAACAC+AGG | 0.641562 | 7_3:+55718307 | Msa1110620:CDS |
| CCATACACACTGGTGCTGGG+TGG | 0.650011 | 7_3:+55717584 | Msa1110620:CDS |
| GCACAGTTGATCTACCAGGA+GGG | 0.680663 | 7_3:+55720675 | Msa1110620:CDS |
| TCAGGTAAGAGTTGATATGG+GGG | 0.697331 | 7_3:+55717745 | Msa1110620:intron |
| TGCACAGTTGATCTACCAGG+AGG | 0.709648 | 7_3:+55720674 | Msa1110620:CDS |
| ATGGCACTGACTGTACAATG+AGG | 0.716138 | 7_3:+55717074 | Msa1110620:CDS |
| CTCTGATGGTAGTGACCCTG+AGG | 0.718259 | 7_3:+55717105 | Msa1110620:CDS |
| TTAGGGACAGTATTTCAAAG+CGG | 0.737764 | 7_3:-55720779 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GGTTTTTAATTTATTTTTTT+GGG | + | chr7_3:55718430-55718449 | Msa1110620:intron | 10.0% |
| !! | TTACAAACAATTATTTGTTT+CGG | + | chr7_3:55717141-55717160 | Msa1110620:intron | 15.0% |
| !! | AAATTGTATAATATGTACAA+GGG | - | chr7_3:55717974-55717993 | None:intergenic | 15.0% |
| !! | TAAATTGTATAATATGTACA+AGG | - | chr7_3:55717975-55717994 | None:intergenic | 15.0% |
| !! | AACAATAAATAACATTTCAA+AGG | - | chr7_3:55718106-55718125 | None:intergenic | 15.0% |
| !!! | AATGTTATTTATTGTTTTAC+TGG | + | chr7_3:55718110-55718129 | Msa1110620:intron | 15.0% |
| !!! | GGGTTTTTAATTTATTTTTT+TGG | + | chr7_3:55718429-55718448 | Msa1110620:intron | 15.0% |
| !! | TGCATAAATAATGAAAAATA+GGG | - | chr7_3:55719262-55719281 | None:intergenic | 15.0% |
| !! | TTGCATAAATAATGAAAAAT+AGG | - | chr7_3:55719263-55719282 | None:intergenic | 15.0% |
| !!! | AATTTTTTAAGAAGGTTTTA+TGG | - | chr7_3:55719286-55719305 | None:intergenic | 15.0% |
| !! | ATACATTTGGATTTAAAAAT+AGG | + | chr7_3:55719365-55719384 | Msa1110620:intron | 15.0% |
| !!! | AATTATTTTTGTCACTATTT+TGG | + | chr7_3:55719660-55719679 | Msa1110620:intron | 15.0% |
| !!! | TAGTAATGATAATGAATCAA+TGG | + | chr7_3:55717468-55717487 | Msa1110620:intron | 20.0% |
| !!! | AAACATTTTCTATTTACTCT+TGG | + | chr7_3:55717662-55717681 | Msa1110620:intron | 20.0% |
| !! | ATCAATTCATAAAATAACCT+TGG | - | chr7_3:55717725-55717744 | None:intergenic | 20.0% |
| !!! | GTTATTTTATGAATTGATTC+AGG | + | chr7_3:55717727-55717746 | Msa1110620:intron | 20.0% |
| !!! | GTTAGTCTATTTTTTATGAT+CGG | + | chr7_3:55718333-55718352 | Msa1110620:intron | 20.0% |
| !!! | TATTTTTTATGATCGGAATA+TGG | + | chr7_3:55718340-55718359 | Msa1110620:intron | 20.0% |
| !!! | AAATGAAAATTTTAGGAAGT+AGG | - | chr7_3:55718399-55718418 | None:intergenic | 20.0% |
| !!! | CTAGTAATTATAATGCTTTT+GGG | + | chr7_3:55718521-55718540 | Msa1110620:intron | 20.0% |
| !!! | ATATTTTTATAGTGTGGTTA+GGG | + | chr7_3:55718890-55718909 | Msa1110620:intron | 20.0% |
| !!! | ATCAACAGAATTTTTTAAGA+AGG | - | chr7_3:55719294-55719313 | None:intergenic | 20.0% |
| !!! | TTTTGTCAAAGAAATACATT+TGG | + | chr7_3:55719352-55719371 | Msa1110620:intron | 20.0% |
| !!! | TATGTCTTTTGAGATTATAT+TGG | + | chr7_3:55720440-55720459 | Msa1110620:intron | 20.0% |
| !!! | ACATTTTTTCCTTAGATGTT+TGG | + | chr7_3:55717206-55717225 | Msa1110620:intron | 25.0% |
| ! | TTATTTGGAGATAATTTAGC+AGG | - | chr7_3:55717797-55717816 | None:intergenic | 25.0% |
| ! | TGCTAAATTATCTCCAAATA+AGG | + | chr7_3:55717796-55717815 | Msa1110620:CDS | 25.0% |
| ! | AGTAACTATTTCACAGTTTA+CGG | + | chr7_3:55717946-55717965 | Msa1110620:intron | 25.0% |
| ! | ACATATTATACAATTTACGC+TGG | + | chr7_3:55717978-55717997 | Msa1110620:intron | 25.0% |
| ! | TTTACGCTGGATTTATTTAA+AGG | + | chr7_3:55717991-55718010 | Msa1110620:intron | 25.0% |
| !! | TCTCATCATGTTCAAATTTT+GGG | - | chr7_3:55718285-55718304 | None:intergenic | 25.0% |
| !! | ATCTCATCATGTTCAAATTT+TGG | - | chr7_3:55718286-55718305 | None:intergenic | 25.0% |
| !!! | AATTTTAGGAAGTAGGTATA+TGG | - | chr7_3:55718392-55718411 | None:intergenic | 25.0% |
| ! | AAGATAGTGATTTACTAACT+TGG | + | chr7_3:55718496-55718515 | Msa1110620:intron | 25.0% |
| ! | AGATAGTGATTTACTAACTT+GGG | + | chr7_3:55718497-55718516 | Msa1110620:intron | 25.0% |
| !! | GCTAGTAATTATAATGCTTT+TGG | + | chr7_3:55718520-55718539 | Msa1110620:intron | 25.0% |
| !!! | GGATTGATATTTTTATAGTG+TGG | + | chr7_3:55718884-55718903 | Msa1110620:intron | 25.0% |
| !!! | GATATTTTTATAGTGTGGTT+AGG | + | chr7_3:55718889-55718908 | Msa1110620:intron | 25.0% |
| !!! | TGTTTTAACTGTTTATATGC+AGG | + | chr7_3:55718958-55718977 | Msa1110620:intron | 25.0% |
| ! | ATTTAAAAATAGGCGTGTTT+GGG | + | chr7_3:55719375-55719394 | Msa1110620:intron | 25.0% |
| !! | GCAATTCATCTTAACAATTT+TGG | - | chr7_3:55719478-55719497 | None:intergenic | 25.0% |
| ! | AGTGACAAAAATAATTAACG+AGG | - | chr7_3:55719656-55719675 | None:intergenic | 25.0% |
| ! | GATCTGCATCATAATATTTA+TGG | + | chr7_3:55719890-55719909 | Msa1110620:intron | 25.0% |
| !! | GAAACATGATTATTTTCAAC+CGG | - | chr7_3:55720223-55720242 | None:intergenic | 25.0% |
| ! | GAAAATAATCATGTTTCTTG+TGG | + | chr7_3:55720226-55720245 | Msa1110620:intron | 25.0% |
| !!! | TAATCGTTTTTCTTATGAGT+TGG | + | chr7_3:55720318-55720337 | Msa1110620:intron | 25.0% |
| ! | AAGCAATTATGTTATCACTT+TGG | + | chr7_3:55720471-55720490 | Msa1110620:intron | 25.0% |
| ! | AATTATGTTATCACTTTGGA+TGG | + | chr7_3:55720475-55720494 | Msa1110620:intron | 25.0% |
| !!! | AAGTTGGTTGAAATATGTTT+TGG | + | chr7_3:55720544-55720563 | Msa1110620:intron | 25.0% |
| !! | CAGATTGAAATTGATAATCA+AGG | - | chr7_3:55720637-55720656 | None:intergenic | 25.0% |
| ATTTGTTTCGGATCTTCATT+AGG | + | chr7_3:55717153-55717172 | Msa1110620:intron | 30.0% | |
| !! | TCTCAGCTTTAGAGTTTATA+TGG | + | chr7_3:55717259-55717278 | Msa1110620:intron | 30.0% |
| !! | CTCAGCTTTAGAGTTTATAT+GGG | + | chr7_3:55717260-55717279 | Msa1110620:intron | 30.0% |
| ACAAGACATAGCAATTAAGA+TGG | - | chr7_3:55717325-55717344 | None:intergenic | 30.0% | |
| !! | CTTGTGGTATTGTGTTTTTA+GGG | + | chr7_3:55717347-55717366 | Msa1110620:intron | 30.0% |
| !! | ATTCAGGTAAGAGTTGATAT+GGG | + | chr7_3:55717743-55717762 | Msa1110620:intron | 30.0% |
| ! | GCAAGCGAAATGAAAATTTT+AGG | - | chr7_3:55718406-55718425 | None:intergenic | 30.0% |
| ! | AAATTTTCATTTCGCTTGCA+AGG | + | chr7_3:55718407-55718426 | Msa1110620:intron | 30.0% |
| ! | AATTTTCATTTCGCTTGCAA+GGG | + | chr7_3:55718408-55718427 | Msa1110620:intron | 30.0% |
| ACATATTTCTCAGAAGATCA+AGG | - | chr7_3:55718457-55718476 | None:intergenic | 30.0% | |
| GATAGTGATTTACTAACTTG+GGG | + | chr7_3:55718498-55718517 | Msa1110620:intron | 30.0% | |
| TTCAAGGAATTAGAATGGTA+GGG | - | chr7_3:55718690-55718709 | None:intergenic | 30.0% | |
| TCAAGTTCAAGGAATTAGAA+TGG | - | chr7_3:55718695-55718714 | None:intergenic | 30.0% | |
| !! | TAAGAGTGAGGAATTTTAAC+AGG | - | chr7_3:55718761-55718780 | None:intergenic | 30.0% |
| ATCTAATTTCTAAGCTGTGT+TGG | + | chr7_3:55718863-55718882 | Msa1110620:intron | 30.0% | |
| TTTGGATTCCATGAAAGTTT+AGG | + | chr7_3:55719328-55719347 | Msa1110620:intron | 30.0% | |
| GACAAAAACCTAAACTTTCA+TGG | - | chr7_3:55719339-55719358 | None:intergenic | 30.0% | |
| GATTTAAAAATAGGCGTGTT+TGG | + | chr7_3:55719374-55719393 | Msa1110620:intron | 30.0% | |
| TTGTTAAGATGAATTGCCAA+AGG | + | chr7_3:55719481-55719500 | Msa1110620:intron | 30.0% | |
| !! | TTTTGTCACTATTTTGGAAG+AGG | + | chr7_3:55719666-55719685 | Msa1110620:intron | 30.0% |
| !! | TTTGTCACTATTTTGGAAGA+GGG | + | chr7_3:55719667-55719686 | Msa1110620:intron | 30.0% |
| TATCTGCCTTGCTTTATATA+TGG | + | chr7_3:55719787-55719806 | Msa1110620:intron | 30.0% | |
| TCCATACCATATATAAAGCA+AGG | - | chr7_3:55719796-55719815 | None:intergenic | 30.0% | |
| TTGCTTTATATATGGTATGG+AGG | + | chr7_3:55719795-55719814 | Msa1110620:intron | 30.0% | |
| TTATAATACTTCCTGTGGTT+TGG | + | chr7_3:55719930-55719949 | Msa1110620:intron | 30.0% | |
| TACACATACTATAATGTCGT+GGG | + | chr7_3:55720053-55720072 | Msa1110620:intron | 30.0% | |
| CAATGCATATCTAAACAGAA+TGG | - | chr7_3:55720163-55720182 | None:intergenic | 30.0% | |
| TAGATATGCATTGCACTATT+TGG | + | chr7_3:55720170-55720189 | Msa1110620:intron | 30.0% | |
| ! | TTGCACTATTTGGTGAAATT+TGG | + | chr7_3:55720180-55720199 | Msa1110620:intron | 30.0% |
| ! | GGTCATACATTTTCTTTTAC+CGG | + | chr7_3:55720201-55720220 | Msa1110620:intron | 30.0% |
| ! | GATCATTCATTTTCTTTTGC+CGG | + | chr7_3:55720288-55720307 | Msa1110620:intron | 30.0% |
| GAAAAACGATTATTAGCAAC+CGG | - | chr7_3:55720310-55720329 | None:intergenic | 30.0% | |
| TTGCACTATTTGTAGAGATT+TGG | + | chr7_3:55720345-55720364 | Msa1110620:intron | 30.0% | |
| TTCTTATTGTATGCATGAGT+TGG | + | chr7_3:55720409-55720428 | Msa1110620:intron | 30.0% | |
| !!! | ATGGAGTTATTTGTTTTGCC+TGG | + | chr7_3:55717046-55717065 | Msa1110620:CDS | 35.0% |
| !!! | TTTGTTTTGCCTGGTATCAA+TGG | + | chr7_3:55717055-55717074 | Msa1110620:CDS | 35.0% |
| ! | ATGAGGATTTTCAACTCTGA+TGG | + | chr7_3:55717091-55717110 | Msa1110620:CDS | 35.0% |
| AAGAAGAACTAATCACCTCA+GGG | - | chr7_3:55717123-55717142 | None:intergenic | 35.0% | |
| TAAGAAGAACTAATCACCTC+AGG | - | chr7_3:55717124-55717143 | None:intergenic | 35.0% | |
| TTTCCTTAGATGTTTGGCAA+TGG | + | chr7_3:55717212-55717231 | Msa1110620:intron | 35.0% | |
| !! | AGCTTTAGAGTTTATATGGG+AGG | + | chr7_3:55717263-55717282 | Msa1110620:intron | 35.0% |
| GATGGTTAGAGTTACGTTTA+TGG | - | chr7_3:55717307-55717326 | None:intergenic | 35.0% | |
| ! | GCTTGTGGTATTGTGTTTTT+AGG | + | chr7_3:55717346-55717365 | Msa1110620:intron | 35.0% |
| ! | CAATGGTGATTTTACTACCA+TGG | + | chr7_3:55717485-55717504 | Msa1110620:intron | 35.0% |
| !! | GATTCAGGTAAGAGTTGATA+TGG | + | chr7_3:55717742-55717761 | Msa1110620:intron | 35.0% |
| !! | TTCAGGTAAGAGTTGATATG+GGG | + | chr7_3:55717744-55717763 | Msa1110620:intron | 35.0% |
| !! | ACATCTGATGCTTTGAGAAT+CGG | - | chr7_3:55717773-55717792 | None:intergenic | 35.0% |
| ACAACAGCATGATCCTTATT+TGG | - | chr7_3:55717812-55717831 | None:intergenic | 35.0% | |
| AAATCAGAGATCGATGTAGA+TGG | + | chr7_3:55717833-55717852 | Msa1110620:intron | 35.0% | |
| ! | AAATGTGACTTGTGTTAGCA+TGG | + | chr7_3:55717865-55717884 | Msa1110620:intron | 35.0% |
| ! | AATGTGACTTGTGTTAGCAT+GGG | + | chr7_3:55717866-55717885 | Msa1110620:intron | 35.0% |
| GTATGACTAGAATAATGACC+TGG | - | chr7_3:55717926-55717945 | None:intergenic | 35.0% | |
| GCATCAACAAGCAAATTATG+TGG | - | chr7_3:55718241-55718260 | None:intergenic | 35.0% | |
| ! | ATTTTCATTTCGCTTGCAAG+GGG | + | chr7_3:55718409-55718428 | Msa1110620:intron | 35.0% |
| ! | TATGTTCAGAGCTTTGGTAT+GGG | + | chr7_3:55718558-55718577 | Msa1110620:intron | 35.0% |
| AATTGTGTGCTTCTGAACAA+GGG | - | chr7_3:55718597-55718616 | None:intergenic | 35.0% | |
| AAATTGTGTGCTTCTGAACA+AGG | - | chr7_3:55718598-55718617 | None:intergenic | 35.0% | |
| GAATAACACATCAAAGCTAG+AGG | - | chr7_3:55718633-55718652 | None:intergenic | 35.0% | |
| TCAAGGAATTAGAATGGTAG+GGG | - | chr7_3:55718689-55718708 | None:intergenic | 35.0% | |
| GTTCAAGGAATTAGAATGGT+AGG | - | chr7_3:55718691-55718710 | None:intergenic | 35.0% | |
| CACATATCAGTTAGGCTATT+TGG | - | chr7_3:55718719-55718738 | None:intergenic | 35.0% | |
| TCAGTATTAGCAAACTTACC+TGG | - | chr7_3:55719053-55719072 | None:intergenic | 35.0% | |
| ! | TGTTGAAAACTTTTCCTCCT+TGG | + | chr7_3:55719177-55719196 | Msa1110620:intron | 35.0% |
| AATAGCTACTATAGTACTCG+AGG | - | chr7_3:55719215-55719234 | None:intergenic | 35.0% | |
| !! | TTCTGTTGATAGCAAACCTA+TGG | + | chr7_3:55719304-55719323 | Msa1110620:intron | 35.0% |
| TGATAGCAAACCTATGGATT+TGG | + | chr7_3:55719310-55719329 | Msa1110620:intron | 35.0% | |
| TTCATGGAATCCAAATCCAT+AGG | - | chr7_3:55719323-55719342 | None:intergenic | 35.0% | |
| GATCTCATCCTTTCTAAGTA+CGG | - | chr7_3:55719623-55719642 | None:intergenic | 35.0% | |
| AAGTAACACTCGATCTTTAC+TGG | + | chr7_3:55719717-55719736 | Msa1110620:intron | 35.0% | |
| GCCTTGCTTTATATATGGTA+TGG | + | chr7_3:55719792-55719811 | Msa1110620:intron | 35.0% | |
| CTTTATATATGGTATGGAGG+TGG | + | chr7_3:55719798-55719817 | Msa1110620:intron | 35.0% | |
| ATGATGCAGATCTGTAACAT+GGG | - | chr7_3:55719882-55719901 | None:intergenic | 35.0% | |
| TATGATGCAGATCTGTAACA+TGG | - | chr7_3:55719883-55719902 | None:intergenic | 35.0% | |
| TCCTCTTATAATACTTCCTG+TGG | + | chr7_3:55719925-55719944 | Msa1110620:intron | 35.0% | |
| !! | ACCACAGGAAGTATTATAAG+AGG | - | chr7_3:55719929-55719948 | None:intergenic | 35.0% |
| TATGTGTACCATACCAAAAG+AGG | - | chr7_3:55720041-55720060 | None:intergenic | 35.0% | |
| GTACACATACTATAATGTCG+TGG | + | chr7_3:55720052-55720071 | Msa1110620:intron | 35.0% | |
| TAGACTTTGTTGCCTAATCT+CGG | + | chr7_3:55720081-55720100 | Msa1110620:intron | 35.0% | |
| TGAAAAAGCCATGCTACAAA+TGG | - | chr7_3:55720137-55720156 | None:intergenic | 35.0% | |
| CTGAAAGACGTATATGAAGT+TGG | + | chr7_3:55720528-55720547 | Msa1110620:intron | 35.0% | |
| GATAATCGTGTCTATATGAC+AGG | + | chr7_3:55720725-55720744 | Msa1110620:CDS | 35.0% | |
| TCAGCAGAACTAGTGTATTA+TGG | + | chr7_3:55720749-55720768 | Msa1110620:CDS | 35.0% | |
| ! | AGAGTTTATATGGGAGGCAT+AGG | + | chr7_3:55717269-55717288 | Msa1110620:intron | 40.0% |
| ! | TTGCTATGTCTTGTTGCTTG+TGG | + | chr7_3:55717331-55717350 | Msa1110620:intron | 40.0% |
| TGTAGTTTCACCATACACAC+TGG | + | chr7_3:55717574-55717593 | Msa1110620:intron | 40.0% | |
| TTCTATTTACTCTTGGCGCA+TGG | + | chr7_3:55717669-55717688 | Msa1110620:intron | 40.0% | |
| !! | TTTGTTCAGAGGCATCAACA+TGG | + | chr7_3:55717694-55717713 | Msa1110620:intron | 40.0% |
| !! | TCAGGTAAGAGTTGATATGG+GGG | + | chr7_3:55717745-55717764 | Msa1110620:intron | 40.0% |
| TTCTAGTGAAGGTTACAGTG+TGG | - | chr7_3:55717896-55717915 | None:intergenic | 40.0% | |
| !!! | CTGGCTTTGTTTTCTAGTGA+AGG | - | chr7_3:55717907-55717926 | None:intergenic | 40.0% |
| CTTCACTAGAAAACAAAGCC+AGG | + | chr7_3:55717905-55717924 | Msa1110620:intron | 40.0% | |
| AAAGGAATGAACCACTGTGT+AGG | + | chr7_3:55718009-55718028 | Msa1110620:intron | 40.0% | |
| ! | TTTTTCCTACTCCTACACAG+TGG | - | chr7_3:55718023-55718042 | None:intergenic | 40.0% |
| GCATTGAAGCTAGCAGAAAT+TGG | + | chr7_3:55718259-55718278 | Msa1110620:intron | 40.0% | |
| CACTATCTTGACAGAATGCA+CGG | - | chr7_3:55718485-55718504 | None:intergenic | 40.0% | |
| ! | GTATGTTCAGAGCTTTGGTA+TGG | + | chr7_3:55718557-55718576 | Msa1110620:intron | 40.0% |
| ATTGTGTGCTTCTGAACAAG+GGG | - | chr7_3:55718596-55718615 | None:intergenic | 40.0% | |
| AATCAGGTAGACAGTATGCA+GGG | - | chr7_3:55718661-55718680 | None:intergenic | 40.0% | |
| AAATCAGGTAGACAGTATGC+AGG | - | chr7_3:55718662-55718681 | None:intergenic | 40.0% | |
| AATGGTAGGGGTTGAAAATC+AGG | - | chr7_3:55718677-55718696 | None:intergenic | 40.0% | |
| TAGCCTAACTGATATGTGTG+TGG | + | chr7_3:55718721-55718740 | Msa1110620:intron | 40.0% | |
| GATCCACACACATATCAGTT+AGG | - | chr7_3:55718727-55718746 | None:intergenic | 40.0% | |
| CACAAGACACAATAAGAGTG+AGG | - | chr7_3:55718773-55718792 | None:intergenic | 40.0% | |
| TATTAGCAAACTTACCTGGC+AGG | - | chr7_3:55719049-55719068 | None:intergenic | 40.0% | |
| TACTATAGTACTCGAGGAGT+AGG | - | chr7_3:55719209-55719228 | None:intergenic | 40.0% | |
| !! | TAGTAGCTATTGACTTGTCG+AGG | + | chr7_3:55719224-55719243 | Msa1110620:intron | 40.0% |
| !! | AGTAGCTATTGACTTGTCGA+GGG | + | chr7_3:55719225-55719244 | Msa1110620:intron | 40.0% |
| TCCAAAGCTGTAGTAGACAA+GGG | - | chr7_3:55719405-55719424 | None:intergenic | 40.0% | |
| TCATTATGGCTGTACAAGGT+TGG | + | chr7_3:55719448-55719467 | Msa1110620:intron | 40.0% | |
| CTAGATCTGTTGAATGCCTT+TGG | - | chr7_3:55719500-55719519 | None:intergenic | 40.0% | |
| GCATTCAACAGATCTAGAGA+GGG | + | chr7_3:55719503-55719522 | Msa1110620:intron | 40.0% | |
| GGATTTCTTTGATGCGAAGT+AGG | + | chr7_3:55719524-55719543 | Msa1110620:intron | 40.0% | |
| !! | GCGAAGTAGGTTTGATTTTG+AGG | + | chr7_3:55719537-55719556 | Msa1110620:intron | 40.0% |
| GTAACAATGAGAAACCAGTG+AGG | - | chr7_3:55719576-55719595 | None:intergenic | 40.0% | |
| GAGTGATCTTGTGAACTTCT+TGG | - | chr7_3:55719598-55719617 | None:intergenic | 40.0% | |
| TCACTCAACCGTACTTAGAA+AGG | + | chr7_3:55719612-55719631 | Msa1110620:intron | 40.0% | |
| TGGAAGAGGGTTCTCATTAA+AGG | + | chr7_3:55719680-55719699 | Msa1110620:intron | 40.0% | |
| !!! | TCCTGTGGTTTGGTCTTTTT+TGG | + | chr7_3:55719940-55719959 | Msa1110620:intron | 40.0% |
| !!! | CCTGTGGTTTGGTCTTTTTT+GGG | + | chr7_3:55719941-55719960 | Msa1110620:intron | 40.0% |
| ATGCATAATCAAAGTGTGCC+AGG | + | chr7_3:55719989-55720008 | Msa1110620:intron | 40.0% | |
| TGCATAATCAAAGTGTGCCA+GGG | + | chr7_3:55719990-55720009 | Msa1110620:intron | 40.0% | |
| !! | TGATAGTGCCTCTTTTGGTA+TGG | + | chr7_3:55720030-55720049 | Msa1110620:intron | 40.0% |
| GAGATTAGGCAACAAAGTCT+AGG | - | chr7_3:55720082-55720101 | None:intergenic | 40.0% | |
| TTCTTGTGGTATGCTTGAGT+TGG | + | chr7_3:55720240-55720259 | Msa1110620:intron | 40.0% | |
| TGTTATCACTTTGGATGGTG+TGG | + | chr7_3:55720480-55720499 | Msa1110620:intron | 40.0% | |
| GATGGTGTGGTTCCTTATAT+CGG | + | chr7_3:55720493-55720512 | Msa1110620:intron | 40.0% | |
| CTGACACTCATACCGATATA+AGG | - | chr7_3:55720508-55720527 | None:intergenic | 40.0% | |
| !! | ATAATCAAGGTACTGCAGCA+AGG | - | chr7_3:55720624-55720643 | None:intergenic | 40.0% |
| TCCTTCCATTCAATCTGAAG+AGG | - | chr7_3:55720701-55720720 | None:intergenic | 40.0% | |
| !! | ATGGCACTGACTGTACAATG+AGG | + | chr7_3:55717074-55717093 | Msa1110620:CDS | 45.0% |
| CAGCCATTGCCAAACATCTA+AGG | - | chr7_3:55717218-55717237 | None:intergenic | 45.0% | |
| ATGCGATGACTACTAGACCA+TGG | - | chr7_3:55717505-55717524 | None:intergenic | 45.0% | |
| GGTCTAGTAGTCATCGCATT+CGG | + | chr7_3:55717506-55717525 | Msa1110620:intron | 45.0% | |
| ! | GTGGATTGTTCCTGAAGTCT+TGG | + | chr7_3:55717603-55717622 | Msa1110620:CDS | 45.0% |
| GATTGTTCCTGAAGTCTTGG+AGG | + | chr7_3:55717606-55717625 | Msa1110620:CDS | 45.0% | |
| TTTCCATCCTCCAAGACTTC+AGG | - | chr7_3:55717616-55717635 | None:intergenic | 45.0% | |
| ATGAACCACTGTGTAGGAGT+AGG | + | chr7_3:55718015-55718034 | Msa1110620:intron | 45.0% | |
| AGACGGTATGTTCAGAGCTT+TGG | + | chr7_3:55718552-55718571 | Msa1110620:intron | 45.0% | |
| ATCAGGTAGACAGTATGCAG+GGG | - | chr7_3:55718660-55718679 | None:intergenic | 45.0% | |
| ! | GGCTATTTGGCTCAAGTTCA+AGG | - | chr7_3:55718706-55718725 | None:intergenic | 45.0% |
| GTGTGGTTAGGGAAAGTCTA+AGG | + | chr7_3:55718901-55718920 | Msa1110620:intron | 45.0% | |
| CTCAAGAACTGCTGCAACAT+CGG | - | chr7_3:55719019-55719038 | None:intergenic | 45.0% | |
| GATGTTGCAGCAGTTCTTGA+GGG | + | chr7_3:55719018-55719037 | Msa1110620:CDS | 45.0% | |
| TCCCTTGTCTACTACAGCTT+TGG | + | chr7_3:55719401-55719420 | Msa1110620:intron | 45.0% | |
| CTCCAAAGCTGTAGTAGACA+AGG | - | chr7_3:55719406-55719425 | None:intergenic | 45.0% | |
| !! | TGTCTACTACAGCTTTGGAG+AGG | + | chr7_3:55719406-55719425 | Msa1110620:intron | 45.0% |
| !! | GTCTACTACAGCTTTGGAGA+GGG | + | chr7_3:55719407-55719426 | Msa1110620:intron | 45.0% |
| GGCATTCAACAGATCTAGAG+AGG | + | chr7_3:55719502-55719521 | Msa1110620:intron | 45.0% | |
| !! | GATGTTTAGAAGCACCTCAC+TGG | + | chr7_3:55719559-55719578 | Msa1110620:intron | 45.0% |
| !! | CTGGTGTCGTAGTGTCTTTA+CGG | + | chr7_3:55719736-55719755 | Msa1110620:intron | 45.0% |
| !! | TGGTGTCGTAGTGTCTTTAC+GGG | + | chr7_3:55719737-55719756 | Msa1110620:intron | 45.0% |
| GTGGCAAATCATGGTGAACT+AGG | + | chr7_3:55719817-55719836 | Msa1110620:intron | 45.0% | |
| GCAAATCATGGTGAACTAGG+TGG | + | chr7_3:55719820-55719839 | Msa1110620:intron | 45.0% | |
| CCCAAAAAAGACCAAACCAC+AGG | - | chr7_3:55719944-55719963 | None:intergenic | 45.0% | |
| !!! | GTGGTTTGGTCTTTTTTGGG+TGG | + | chr7_3:55719944-55719963 | Msa1110620:intron | 45.0% |
| TGTTGCAGCCATTTGTAGCA+TGG | + | chr7_3:55720126-55720145 | Msa1110620:intron | 45.0% | |
| AACTGCACAGTTGATCTACC+AGG | + | chr7_3:55720671-55720690 | Msa1110620:CDS | 45.0% | |
| GCCTCTTCAGATTGAATGGA+AGG | + | chr7_3:55720697-55720716 | Msa1110620:CDS | 45.0% | |
| ! | CAGTCAGTGCCATTGATACC+AGG | - | chr7_3:55717067-55717086 | None:intergenic | 50.0% |
| TTCACCATACACACTGGTGC+TGG | + | chr7_3:55717580-55717599 | Msa1110620:CDS | 50.0% | |
| TCACCATACACACTGGTGCT+GGG | + | chr7_3:55717581-55717600 | Msa1110620:CDS | 50.0% | |
| GTTCCTGAAGTCTTGGAGGA+TGG | + | chr7_3:55717610-55717629 | Msa1110620:CDS | 50.0% | |
| GCATCAACATGGTGCTTCCA+AGG | + | chr7_3:55717705-55717724 | Msa1110620:intron | 50.0% | |
| TTCCCTGCACGAACTAACAC+AGG | + | chr7_3:55718307-55718326 | Msa1110620:CDS | 50.0% | |
| GACCTGTGTTAGTTCGTGCA+GGG | - | chr7_3:55718312-55718331 | None:intergenic | 50.0% | |
| TGACCTGTGTTAGTTCGTGC+AGG | - | chr7_3:55718313-55718332 | None:intergenic | 50.0% | |
| !!! | GCTTTTGGGACTACGTCAGA+CGG | + | chr7_3:55718535-55718554 | Msa1110620:intron | 50.0% |
| TCAGGTAGACAGTATGCAGG+GGG | - | chr7_3:55718659-55718678 | None:intergenic | 50.0% | |
| ! | CTAAGGAGTCTCGACTTGTG+CGG | + | chr7_3:55718918-55718937 | Msa1110620:intron | 50.0% |
| ! | TAAGGAGTCTCGACTTGTGC+GGG | + | chr7_3:55718919-55718938 | Msa1110620:intron | 50.0% |
| GCAACTCTTGCTTGTGGAAC+TGG | + | chr7_3:55718982-55719001 | Msa1110620:CDS | 50.0% | |
| CGATGTTGCAGCAGTTCTTG+AGG | + | chr7_3:55719017-55719036 | Msa1110620:CDS | 50.0% | |
| GGAGTAGGAAATCTCCAAGG+AGG | - | chr7_3:55719194-55719213 | None:intergenic | 50.0% | |
| CGAGGAGTAGGAAATCTCCA+AGG | - | chr7_3:55719197-55719216 | None:intergenic | 50.0% | |
| !! | TACTACAGCTTTGGAGAGGG+AGG | + | chr7_3:55719410-55719429 | Msa1110620:intron | 50.0% |
| AGTTGGGGAAGGGCTCATTA+TGG | + | chr7_3:55719434-55719453 | Msa1110620:intron | 50.0% | |
| GGGCTCATTATGGCTGTACA+AGG | + | chr7_3:55719444-55719463 | Msa1110620:intron | 50.0% | |
| GGTATGGAGGTGGCAAATCA+TGG | + | chr7_3:55719808-55719827 | Msa1110620:intron | 50.0% | |
| GGCACTATCACAGCCAACAT+TGG | - | chr7_3:55720020-55720039 | None:intergenic | 50.0% | |
| !! | GGCTGTGATAGTGCCTCTTT+TGG | + | chr7_3:55720025-55720044 | Msa1110620:intron | 50.0% |
| ACTCGTAGCACACCGAGATT+AGG | - | chr7_3:55720096-55720115 | None:intergenic | 50.0% | |
| !! | CAAGGTACTGCAGCAAGGAA+TGG | - | chr7_3:55720619-55720638 | None:intergenic | 50.0% |
| TGCACAGTTGATCTACCAGG+AGG | + | chr7_3:55720674-55720693 | Msa1110620:CDS | 50.0% | |
| GCACAGTTGATCTACCAGGA+GGG | + | chr7_3:55720675-55720694 | Msa1110620:CDS | 50.0% | |
| GAGGGCCTCTTCAGATTGAA+TGG | + | chr7_3:55720693-55720712 | Msa1110620:CDS | 50.0% | |
| ! | CTCTGATGGTAGTGACCCTG+AGG | + | chr7_3:55717105-55717124 | Msa1110620:CDS | 55.0% |
| GGCGCATGGTGTTTGTTCAG+AGG | + | chr7_3:55717683-55717702 | Msa1110620:intron | 55.0% | |
| CTCACCTGAAGATGCGTGCA+TGG | + | chr7_3:55718819-55718838 | Msa1110620:CDS | 55.0% | |
| GCTTCCATGCACGCATCTTC+AGG | - | chr7_3:55718826-55718845 | None:intergenic | 55.0% | |
| AAGATGCGTGCATGGAAGCG+AGG | + | chr7_3:55718827-55718846 | Msa1110620:CDS | 55.0% | |
| GCAGGAGCAACTCTTGCTTG+TGG | + | chr7_3:55718976-55718995 | Msa1110620:intron | 55.0% | |
| ! | CTTTGGAGAGGGAGGCAGTT+GGG | + | chr7_3:55719418-55719437 | Msa1110620:intron | 55.0% |
| TTTGGAGAGGGAGGCAGTTG+GGG | + | chr7_3:55719419-55719438 | Msa1110620:intron | 55.0% | |
| GTGCCAGGGTTGTCCAATGT+TGG | + | chr7_3:55720004-55720023 | Msa1110620:intron | 55.0% | |
| CAGCCAACATTGGACAACCC+TGG | - | chr7_3:55720010-55720029 | None:intergenic | 55.0% | |
| TCAATCTGAAGAGGCCCTCC+TGG | - | chr7_3:55720692-55720711 | None:intergenic | 55.0% | |
| CCACCCAGCACCAGTGTGTA+TGG | - | chr7_3:55717587-55717606 | None:intergenic | 60.0% | |
| ! | CCATACACACTGGTGCTGGG+TGG | + | chr7_3:55717584-55717603 | Msa1110620:CDS | 60.0% |
| TCTTGAGGGTTGTGCCTGCC+AGG | + | chr7_3:55719032-55719051 | Msa1110620:CDS | 60.0% | |
| !! | GCTTTGGAGAGGGAGGCAGT+TGG | + | chr7_3:55719417-55719436 | Msa1110620:intron | 60.0% |
| AGAGGGAGGCAGTTGGGGAA+GGG | + | chr7_3:55719424-55719443 | Msa1110620:intron | 60.0% | |
| CGTGCATGGAAGCGAGGAGC+AGG | + | chr7_3:55718833-55718852 | Msa1110620:CDS | 65.0% | |
| GAGAGGGAGGCAGTTGGGGA+AGG | + | chr7_3:55719423-55719442 | Msa1110620:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_3 | gene | 55717046 | 55720787 | 55717046 | ID=Msa1110620;Name=Msa1110620 |
| chr7_3 | mRNA | 55717046 | 55720787 | 55717046 | ID=Msa1110620-mRNA-1;Parent=Msa1110620;Name=Msa1110620-mRNA-1;_AED=0.22;_eAED=0.23;_QI=0|0|0|1|0.71|0.75|8|0|185 |
| chr7_3 | exon | 55717046 | 55717126 | 55717046 | ID=Msa1110620-mRNA-1:exon:11699;Parent=Msa1110620-mRNA-1 |
| chr7_3 | exon | 55717271 | 55717290 | 55717271 | ID=Msa1110620-mRNA-1:exon:11700;Parent=Msa1110620-mRNA-1 |
| chr7_3 | exon | 55717579 | 55717636 | 55717579 | ID=Msa1110620-mRNA-1:exon:11701;Parent=Msa1110620-mRNA-1 |
| chr7_3 | exon | 55717749 | 55717847 | 55717749 | ID=Msa1110620-mRNA-1:exon:11702;Parent=Msa1110620-mRNA-1 |
| chr7_3 | exon | 55718268 | 55718328 | 55718268 | ID=Msa1110620-mRNA-1:exon:11703;Parent=Msa1110620-mRNA-1 |
| chr7_3 | exon | 55718807 | 55718854 | 55718807 | ID=Msa1110620-mRNA-1:exon:11704;Parent=Msa1110620-mRNA-1 |
| chr7_3 | exon | 55718980 | 55719053 | 55718980 | ID=Msa1110620-mRNA-1:exon:11705;Parent=Msa1110620-mRNA-1 |
| chr7_3 | exon | 55720671 | 55720787 | 55720671 | ID=Msa1110620-mRNA-1:exon:11706;Parent=Msa1110620-mRNA-1 |
| chr7_3 | CDS | 55717046 | 55717126 | 55717046 | ID=Msa1110620-mRNA-1:cds;Parent=Msa1110620-mRNA-1 |
| chr7_3 | CDS | 55717271 | 55717290 | 55717271 | ID=Msa1110620-mRNA-1:cds;Parent=Msa1110620-mRNA-1 |
| chr7_3 | CDS | 55717579 | 55717636 | 55717579 | ID=Msa1110620-mRNA-1:cds;Parent=Msa1110620-mRNA-1 |
| chr7_3 | CDS | 55717749 | 55717847 | 55717749 | ID=Msa1110620-mRNA-1:cds;Parent=Msa1110620-mRNA-1 |
| chr7_3 | CDS | 55718268 | 55718328 | 55718268 | ID=Msa1110620-mRNA-1:cds;Parent=Msa1110620-mRNA-1 |
| chr7_3 | CDS | 55718807 | 55718854 | 55718807 | ID=Msa1110620-mRNA-1:cds;Parent=Msa1110620-mRNA-1 |
| chr7_3 | CDS | 55718980 | 55719053 | 55718980 | ID=Msa1110620-mRNA-1:cds;Parent=Msa1110620-mRNA-1 |
| chr7_3 | CDS | 55720671 | 55720787 | 55720671 | ID=Msa1110620-mRNA-1:cds;Parent=Msa1110620-mRNA-1 |
| Gene Sequence |
| Protein sequence |
