Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0887990 | PNY14955.1 | 92.941 | 85 | 6 | 0 | 6 | 90 | 41 | 125 | 1.64e-47 | 167 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0887990 | sp|Q9SFU0|SC24A_ARATH | 74.118 | 85 | 22 | 0 | 6 | 90 | 604 | 688 | 5.54e-40 | 143 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0887990 | A0A2K3PI82 | 92.941 | 85 | 6 | 0 | 6 | 90 | 41 | 125 | 7.85e-48 | 167 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0112750 | Msa0887990 | 0.821139 | 4.733497e-53 | -8.615850e-47 |
| Msa0627410 | Msa0887990 | 0.866383 | 2.967594e-65 | -8.615850e-47 |
| Msa0635540 | Msa0887990 | 0.800206 | 1.606745e-48 | -8.615850e-47 |
| Msa0635610 | Msa0887990 | 0.802431 | 5.629960e-49 | -8.615850e-47 |
| Msa0636170 | Msa0887990 | 0.802371 | 5.792543e-49 | -8.615850e-47 |
| Msa0637540 | Msa0887990 | 0.816953 | 4.240004e-52 | -8.615850e-47 |
| Msa0657970 | Msa0887990 | 0.812385 | 4.353522e-51 | -8.615850e-47 |
| Msa0669870 | Msa0887990 | 0.820393 | 7.022456e-53 | -8.615850e-47 |
| Msa0678930 | Msa0887990 | 0.854021 | 1.623779e-61 | -8.615850e-47 |
| Msa0697060 | Msa0887990 | 0.810221 | 1.284074e-50 | -8.615850e-47 |
| Msa0726140 | Msa0887990 | 0.806220 | 9.144512e-50 | -8.615850e-47 |
| Msa0729000 | Msa0887990 | 0.817110 | 3.909323e-52 | -8.615850e-47 |
| Msa0736000 | Msa0887990 | 0.801400 | 9.168271e-49 | -8.615850e-47 |
| Msa0741570 | Msa0887990 | 0.841105 | 5.814328e-58 | -8.615850e-47 |
| Msa0766630 | Msa0887990 | 0.810444 | 1.149196e-50 | -8.615850e-47 |
| Msa0793640 | Msa0887990 | 0.815143 | 1.074873e-51 | -8.615850e-47 |
| Msa0822650 | Msa0887990 | 0.815616 | 8.439485e-52 | -8.615850e-47 |
| Msa0831970 | Msa0887990 | 0.825695 | 4.074320e-54 | -8.615850e-47 |
| Msa0142220 | Msa0887990 | 0.811192 | 7.916445e-51 | -8.615850e-47 |
| Msa0153910 | Msa0887990 | 0.804220 | 2.398642e-49 | -8.615850e-47 |
| Msa0165550 | Msa0887990 | 0.808214 | 3.456911e-50 | -8.615850e-47 |
| Msa0193610 | Msa0887990 | 0.816615 | 5.048683e-52 | -8.615850e-47 |
| Msa0199240 | Msa0887990 | 0.802094 | 6.604832e-49 | -8.615850e-47 |
| Msa0203500 | Msa0887990 | 0.815652 | 8.285193e-52 | -8.615850e-47 |
| Msa0236250 | Msa0887990 | 0.828661 | 7.940216e-55 | -8.615850e-47 |
| Msa0366580 | Msa0887990 | 0.810072 | 1.382238e-50 | -8.615850e-47 |
| Msa0394970 | Msa0887990 | 0.807373 | 5.218479e-50 | -8.615850e-47 |
| Msa0399300 | Msa0887990 | 0.836340 | 9.908034e-57 | -8.615850e-47 |
| Msa0406120 | Msa0887990 | 0.821246 | 4.471946e-53 | -8.615850e-47 |
| Msa0431500 | Msa0887990 | 0.876914 | 9.554175e-69 | -8.615850e-47 |
| Msa0431690 | Msa0887990 | 0.804302 | 2.305982e-49 | -8.615850e-47 |
| Msa0432290 | Msa0887990 | 0.822544 | 2.238548e-53 | -8.615850e-47 |
| Msa0437990 | Msa0887990 | 0.802832 | 4.651672e-49 | -8.615850e-47 |
| Msa0456200 | Msa0887990 | 0.871857 | 4.964715e-67 | -8.615850e-47 |
| Msa0273660 | Msa0887990 | 0.821887 | 3.178900e-53 | -8.615850e-47 |
| Msa0313760 | Msa0887990 | 0.816650 | 4.956908e-52 | -8.615850e-47 |
| Msa0324150 | Msa0887990 | 0.911884 | 3.665350e-83 | -8.615850e-47 |
| Msa0326200 | Msa0887990 | 0.877681 | 5.171557e-69 | -8.615850e-47 |
| Msa0353190 | Msa0887990 | 0.871538 | 6.330869e-67 | -8.615850e-47 |
| Msa0353690 | Msa0887990 | 0.861823 | 7.827201e-64 | -8.615850e-47 |
| Msa0360900 | Msa0887990 | 0.872991 | 2.077827e-67 | -8.615850e-47 |
| Msa0363300 | Msa0887990 | 0.807922 | 3.988445e-50 | -8.615850e-47 |
| Msa0512890 | Msa0887990 | 0.809402 | 1.926073e-50 | -8.615850e-47 |
| Msa0512900 | Msa0887990 | 0.839388 | 1.632660e-57 | -8.615850e-47 |
| Msa0589780 | Msa0887990 | 0.804837 | 1.783119e-49 | -8.615850e-47 |
| Msa0885280 | Msa0887990 | 0.832746 | 7.928541e-56 | -8.615850e-47 |
| Msa0885290 | Msa0887990 | 0.864562 | 1.111911e-64 | -8.615850e-47 |
| Msa0887020 | Msa0887990 | 0.808491 | 3.017116e-50 | -8.615850e-47 |
| Msa0887990 | Msa0909120 | 0.800908 | 1.155881e-48 | -8.615850e-47 |
| Msa0887990 | Msa0917810 | 0.803685 | 3.098126e-49 | -8.615850e-47 |
| Msa0887990 | Msa0922720 | 0.826853 | 2.159993e-54 | -8.615850e-47 |
| Msa0887990 | Msa0954810 | 0.845409 | 4.135967e-59 | -8.615850e-47 |
| Msa0887990 | Msa0954920 | 0.845927 | 2.992071e-59 | -8.615850e-47 |
| Msa0887990 | Msa0961090 | 0.819641 | 1.044157e-52 | -8.615850e-47 |
| Msa0887990 | Msa0965750 | 0.817480 | 3.226372e-52 | -8.615850e-47 |
| Msa0887990 | Msa0969450 | 0.810451 | 1.145114e-50 | -8.615850e-47 |
| Msa0887990 | Msa0985950 | 0.812498 | 4.113345e-51 | -8.615850e-47 |
| Msa0887990 | Msa0991230 | 0.805901 | 1.067001e-49 | -8.615850e-47 |
| Msa0887990 | Msa1015800 | 0.809881 | 1.519982e-50 | -8.615850e-47 |
| Msa0887990 | Msa1024240 | 0.821432 | 4.050052e-53 | -8.615850e-47 |
| Msa0887990 | Msa1059750 | 0.802445 | 5.591508e-49 | -8.615850e-47 |
| Msa0887990 | Msa1077870 | 0.836130 | 1.120708e-56 | -8.615850e-47 |
| Msa0887990 | Msa1082500 | 0.802039 | 6.776683e-49 | -8.615850e-47 |
| Msa0887990 | Msa1084240 | 0.865489 | 5.691097e-65 | -8.615850e-47 |
| Msa0887990 | Msa1100980 | 0.823427 | 1.392984e-53 | -8.615850e-47 |
| Msa0887990 | Msa1110620 | 0.801056 | 1.077942e-48 | -8.615850e-47 |
| Msa0887990 | Msa1117080 | 0.821207 | 4.564531e-53 | -8.615850e-47 |
| Msa0887990 | Msa1135740 | 0.821371 | 4.183113e-53 | -8.615850e-47 |
| Msa0887990 | Msa1146110 | 0.824653 | 7.184295e-54 | -8.615850e-47 |
| Msa0887990 | Msa1148020 | 0.802345 | 5.862445e-49 | -8.615850e-47 |
| Msa0887990 | Msa1160670 | 0.844312 | 8.173791e-59 | -8.615850e-47 |
| Msa0887990 | Msa1160690 | 0.818814 | 1.610945e-52 | -8.615850e-47 |
| Msa0887990 | Msa1178720 | 0.847429 | 1.162843e-59 | -8.615850e-47 |
| Msa0887990 | Msa1187940 | 0.855501 | 6.047128e-62 | -8.615850e-47 |
| Msa0887990 | Msa1187950 | 0.820548 | 6.471965e-53 | -8.615850e-47 |
| Msa0887990 | Msa1260100 | 0.826041 | 3.372548e-54 | -8.615850e-47 |
| Msa0887990 | Msa1285930 | 0.802881 | 4.545578e-49 | -8.615850e-47 |
| Msa0887990 | Msa1297210 | 0.831449 | 1.658490e-55 | -8.615850e-47 |
| Msa0887990 | Msa1397610 | 0.885663 | 6.695429e-72 | -8.615850e-47 |
| Msa0887990 | Msa1438250 | 0.837593 | 4.744376e-57 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0887990 | MtrunA17_Chr7g0271481 | 91.765 | 85 | 7 | 0 | 6 | 90 | 586 | 670 | 6.70e-51 | 171 |
| Msa0887990 | MtrunA17_Chr1g0210851 | 36.585 | 82 | 52 | 0 | 9 | 90 | 686 | 767 | 5.38e-14 | 66.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0887990 | AT3G07100.1 | 74.118 | 85 | 22 | 0 | 6 | 90 | 604 | 688 | 5.63e-41 | 143 |
| Msa0887990 | AT4G32640.2 | 34.146 | 82 | 54 | 0 | 9 | 90 | 669 | 750 | 5.75e-12 | 60.8 |
| Msa0887990 | AT4G32640.1 | 34.146 | 82 | 54 | 0 | 9 | 90 | 669 | 750 | 5.75e-12 | 60.8 |
| Msa0887990 | AT3G44340.5 | 35.366 | 82 | 53 | 0 | 9 | 90 | 672 | 753 | 5.92e-12 | 60.8 |
| Msa0887990 | AT3G44340.2 | 35.366 | 82 | 53 | 0 | 9 | 90 | 672 | 753 | 5.92e-12 | 60.8 |
| Msa0887990 | AT3G44340.1 | 35.366 | 82 | 53 | 0 | 9 | 90 | 672 | 753 | 5.93e-12 | 60.8 |
| Msa0887990 | AT3G44340.4 | 35.366 | 82 | 53 | 0 | 9 | 90 | 672 | 753 | 5.93e-12 | 60.8 |
| Msa0887990 | AT3G44340.3 | 35.366 | 82 | 53 | 0 | 9 | 90 | 672 | 753 | 5.93e-12 | 60.8 |
Find 18 sgRNAs with CRISPR-Local
Find 126 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCTCATAAAATGGATCTTC+AGG | 0.293277 | 6_1:-51653924 | None:intergenic |
| AGAAATTGAGTCATGAATTA+AGG | 0.308061 | 6_1:+51654450 | Msa0887990:CDS |
| CATACACATTTACTGAGATT+TGG | 0.310882 | 6_1:-51653971 | None:intergenic |
| GCAGCCATCTGCTCATAAAA+TGG | 0.311495 | 6_1:-51653933 | None:intergenic |
| ATTTACTGAGATTTGGTACT+TGG | 0.355044 | 6_1:-51653964 | None:intergenic |
| TCTCCCCATGAGTTGCTGAT+TGG | 0.417715 | 6_1:-51654430 | None:intergenic |
| TTCTGTCTGTGTAGGAACTC+TGG | 0.429146 | 6_1:+51654367 | Msa0887990:intron |
| TGAGTTGCTGATTGGAAAGC+TGG | 0.488951 | 6_1:-51654422 | None:intergenic |
| GAGAGACTGCATGGGAAGCA+TGG | 0.524555 | 6_1:+51654486 | Msa0887990:CDS |
| CTTTCCAATCAGCAACTCAT+GGG | 0.525222 | 6_1:+51654426 | Msa0887990:CDS |
| GCTTTCCAATCAGCAACTCA+TGG | 0.538623 | 6_1:+51654425 | Msa0887990:CDS |
| ACCTCACAAGAGAGACTGCA+TGG | 0.560035 | 6_1:+51654477 | Msa0887990:CDS |
| GGAAAATAAAACACTTAAGG+AGG | 0.565991 | 6_1:-51654021 | None:intergenic |
| ACTCTGGCAAAGTACACTGC+TGG | 0.591069 | 6_1:+51654383 | Msa0887990:CDS |
| CCCATGCAGTCTCTCTTGTG+AGG | 0.598716 | 6_1:-51654478 | None:intergenic |
| TTTGGGACAGATAAAGAACA+TGG | 0.635621 | 6_1:+51653891 | Msa0887990:intron |
| TTTCCAATCAGCAACTCATG+GGG | 0.670512 | 6_1:+51654427 | Msa0887990:CDS |
| CCTCACAAGAGAGACTGCAT+GGG | 0.693489 | 6_1:+51654478 | Msa0887990:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TGTTTGTATTAAGTTATATT+TGG | + | chr6_1:51653397-51653416 | Msa0887990:intron | 15.0% |
| !!! | ATTTGGTAATTAGTTATATT+TGG | + | chr6_1:51653414-51653433 | Msa0887990:intron | 15.0% |
| !! | TGTTTGTATTAAGTTATATT+TGG | + | chr6_1:51653397-51653416 | Msa0887990:intron | 15.0% |
| !!! | ATTTGGTAATTAGTTATATT+TGG | + | chr6_1:51653414-51653433 | Msa0887990:intron | 15.0% |
| !! | CGTAAATGTATATGTTTAAT+AGG | + | chr6_1:51653474-51653493 | Msa0887990:intron | 20.0% |
| !!! | ATATTTTTGTTGTATTAGTG+TGG | + | chr6_1:51653682-51653701 | Msa0887990:intron | 20.0% |
| !! | TAACAGGTTTAAAAATAGAA+TGG | - | chr6_1:51654072-51654091 | None:intergenic | 20.0% |
| !! | CGTAAATGTATATGTTTAAT+AGG | + | chr6_1:51653474-51653493 | Msa0887990:intron | 20.0% |
| !!! | ATATTTTTGTTGTATTAGTG+TGG | + | chr6_1:51653682-51653701 | Msa0887990:intron | 20.0% |
| !! | TAACAGGTTTAAAAATAGAA+TGG | - | chr6_1:51654072-51654091 | None:intergenic | 20.0% |
| ! | TTGACTTTAATAAGATGCTT+TGG | + | chr6_1:51653361-51653380 | Msa0887990:intron | 25.0% |
| ! | AAAACATCCTGCAAATTAAT+AGG | + | chr6_1:51653437-51653456 | Msa0887990:intron | 25.0% |
| ! | ATTAATAGGATCACATGATT+AGG | + | chr6_1:51653451-51653470 | Msa0887990:intron | 25.0% |
| ! | ATGGTTTATATACAAAAAGG+AGG | - | chr6_1:51653548-51653567 | None:intergenic | 25.0% |
| ! | GTCATGGTTTATATACAAAA+AGG | - | chr6_1:51653551-51653570 | None:intergenic | 25.0% |
| !! | TGTCTATCTATTTCTCAAAT+AGG | - | chr6_1:51653573-51653592 | None:intergenic | 25.0% |
| ! | AAAACTAGTCATTTGTTCAT+TGG | + | chr6_1:51653659-51653678 | Msa0887990:intron | 25.0% |
| ! | GTGATAAAATTGATATGCAA+TGG | - | chr6_1:51653737-51653756 | None:intergenic | 25.0% |
| ! | ATGTTCTGATATTTGTGTAA+TGG | + | chr6_1:51653783-51653802 | Msa0887990:intron | 25.0% |
| ! | AATTTCAACACACAAAAAGA+TGG | - | chr6_1:51653851-51653870 | None:intergenic | 25.0% |
| !!! | AGTGTATTAGTGTATTGATT+TGG | + | chr6_1:51653873-51653892 | Msa0887990:intron | 25.0% |
| !!! | GTGTATTAGTGTATTGATTT+GGG | + | chr6_1:51653874-51653893 | Msa0887990:intron | 25.0% |
| ! | GAAGGAAAATAAAACACTTA+AGG | - | chr6_1:51654027-51654046 | None:intergenic | 25.0% |
| ! | ACGAAATACATAGAAATTGA+AGG | - | chr6_1:51654045-51654064 | None:intergenic | 25.0% |
| ! | ATCAATTAATCAAGAGTAAC+AGG | - | chr6_1:51654088-51654107 | None:intergenic | 25.0% |
| ! | ACTTAATGACATGAGTTTAT+GGG | + | chr6_1:51654148-51654167 | Msa0887990:intron | 25.0% |
| ! | TAAACTGATACTTTAACTCA+TGG | + | chr6_1:51654191-51654210 | Msa0887990:intron | 25.0% |
| ! | AGAAATTGAGTCATGAATTA+AGG | + | chr6_1:51654450-51654469 | Msa0887990:CDS | 25.0% |
| ! | TTGACTTTAATAAGATGCTT+TGG | + | chr6_1:51653361-51653380 | Msa0887990:intron | 25.0% |
| ! | AAAACATCCTGCAAATTAAT+AGG | + | chr6_1:51653437-51653456 | Msa0887990:intron | 25.0% |
| ! | ATTAATAGGATCACATGATT+AGG | + | chr6_1:51653451-51653470 | Msa0887990:intron | 25.0% |
| ! | ATGGTTTATATACAAAAAGG+AGG | - | chr6_1:51653548-51653567 | None:intergenic | 25.0% |
| ! | GTCATGGTTTATATACAAAA+AGG | - | chr6_1:51653551-51653570 | None:intergenic | 25.0% |
| !! | TGTCTATCTATTTCTCAAAT+AGG | - | chr6_1:51653573-51653592 | None:intergenic | 25.0% |
| ! | AAAACTAGTCATTTGTTCAT+TGG | + | chr6_1:51653659-51653678 | Msa0887990:intron | 25.0% |
| ! | GTGATAAAATTGATATGCAA+TGG | - | chr6_1:51653737-51653756 | None:intergenic | 25.0% |
| ! | ATGTTCTGATATTTGTGTAA+TGG | + | chr6_1:51653783-51653802 | Msa0887990:intron | 25.0% |
| ! | AATTTCAACACACAAAAAGA+TGG | - | chr6_1:51653851-51653870 | None:intergenic | 25.0% |
| !!! | AGTGTATTAGTGTATTGATT+TGG | + | chr6_1:51653873-51653892 | Msa0887990:intron | 25.0% |
| !!! | GTGTATTAGTGTATTGATTT+GGG | + | chr6_1:51653874-51653893 | Msa0887990:intron | 25.0% |
| ! | GAAGGAAAATAAAACACTTA+AGG | - | chr6_1:51654027-51654046 | None:intergenic | 25.0% |
| ! | ACGAAATACATAGAAATTGA+AGG | - | chr6_1:51654045-51654064 | None:intergenic | 25.0% |
| ! | ATCAATTAATCAAGAGTAAC+AGG | - | chr6_1:51654088-51654107 | None:intergenic | 25.0% |
| ! | ACTTAATGACATGAGTTTAT+GGG | + | chr6_1:51654148-51654167 | Msa0887990:intron | 25.0% |
| ! | TAAACTGATACTTTAACTCA+TGG | + | chr6_1:51654191-51654210 | Msa0887990:intron | 25.0% |
| ! | AGAAATTGAGTCATGAATTA+AGG | + | chr6_1:51654450-51654469 | Msa0887990:CDS | 25.0% |
| !! | ATGTGATCCTATTAATTTGC+AGG | - | chr6_1:51653447-51653466 | None:intergenic | 30.0% |
| ! | TCTATTTCTCAAATAGGTCA+TGG | - | chr6_1:51653567-51653586 | None:intergenic | 30.0% |
| AAAATTGATATGCAATGGCA+AGG | - | chr6_1:51653732-51653751 | None:intergenic | 30.0% | |
| !! | GATATTTGTGTAATGGATAG+AGG | + | chr6_1:51653790-51653809 | Msa0887990:intron | 30.0% |
| ! | ATTTACTGAGATTTGGTACT+TGG | - | chr6_1:51653967-51653986 | None:intergenic | 30.0% |
| CATACACATTTACTGAGATT+TGG | - | chr6_1:51653974-51653993 | None:intergenic | 30.0% | |
| GGAAAATAAAACACTTAAGG+AGG | - | chr6_1:51654024-51654043 | None:intergenic | 30.0% | |
| ! | ATTTGATGATTCTTCAGTTG+TGG | + | chr6_1:51654110-51654129 | Msa0887990:intron | 30.0% |
| GACTTAATGACATGAGTTTA+TGG | + | chr6_1:51654147-51654166 | Msa0887990:intron | 30.0% | |
| AAATGCTGACAGAATTACAT+CGG | - | chr6_1:51654282-51654301 | None:intergenic | 30.0% | |
| !!! | TGTTTTTTTTCTGTCTGTGT+AGG | + | chr6_1:51654359-51654378 | Msa0887990:intron | 30.0% |
| !! | ATGTGATCCTATTAATTTGC+AGG | - | chr6_1:51653447-51653466 | None:intergenic | 30.0% |
| ! | TCTATTTCTCAAATAGGTCA+TGG | - | chr6_1:51653567-51653586 | None:intergenic | 30.0% |
| AAAATTGATATGCAATGGCA+AGG | - | chr6_1:51653732-51653751 | None:intergenic | 30.0% | |
| !! | GATATTTGTGTAATGGATAG+AGG | + | chr6_1:51653790-51653809 | Msa0887990:intron | 30.0% |
| ! | ATTTACTGAGATTTGGTACT+TGG | - | chr6_1:51653967-51653986 | None:intergenic | 30.0% |
| CATACACATTTACTGAGATT+TGG | - | chr6_1:51653974-51653993 | None:intergenic | 30.0% | |
| GGAAAATAAAACACTTAAGG+AGG | - | chr6_1:51654024-51654043 | None:intergenic | 30.0% | |
| ! | ATTTGATGATTCTTCAGTTG+TGG | + | chr6_1:51654110-51654129 | Msa0887990:intron | 30.0% |
| GACTTAATGACATGAGTTTA+TGG | + | chr6_1:51654147-51654166 | Msa0887990:intron | 30.0% | |
| AAATGCTGACAGAATTACAT+CGG | - | chr6_1:51654282-51654301 | None:intergenic | 30.0% | |
| !!! | TGTTTTTTTTCTGTCTGTGT+AGG | + | chr6_1:51654359-51654378 | Msa0887990:intron | 30.0% |
| ! | ATAATTCTAGGAGCTAACAG+AGG | + | chr6_1:51653522-51653541 | Msa0887990:intron | 35.0% |
| ! | TTTGGGACAGATAAAGAACA+TGG | + | chr6_1:51653891-51653910 | Msa0887990:intron | 35.0% |
| TGCTCATAAAATGGATCTTC+AGG | - | chr6_1:51653927-51653946 | None:intergenic | 35.0% | |
| ! | AGATCCATTTTATGAGCAGA+TGG | + | chr6_1:51653929-51653948 | Msa0887990:CDS | 35.0% |
| AATGCTGACAGAATTACATC+GGG | - | chr6_1:51654281-51654300 | None:intergenic | 35.0% | |
| TGTAATTCTGTCAGCATTTG+CGG | + | chr6_1:51654283-51654302 | Msa0887990:intron | 35.0% | |
| ! | ATAATTCTAGGAGCTAACAG+AGG | + | chr6_1:51653522-51653541 | Msa0887990:intron | 35.0% |
| ! | TTTGGGACAGATAAAGAACA+TGG | + | chr6_1:51653891-51653910 | Msa0887990:intron | 35.0% |
| TGCTCATAAAATGGATCTTC+AGG | - | chr6_1:51653927-51653946 | None:intergenic | 35.0% | |
| ! | AGATCCATTTTATGAGCAGA+TGG | + | chr6_1:51653929-51653948 | Msa0887990:CDS | 35.0% |
| AATGCTGACAGAATTACATC+GGG | - | chr6_1:51654281-51654300 | None:intergenic | 35.0% | |
| TGTAATTCTGTCAGCATTTG+CGG | + | chr6_1:51654283-51654302 | Msa0887990:intron | 35.0% | |
| ! | ACTGTCAGAGGCATAATTCT+AGG | + | chr6_1:51653510-51653529 | Msa0887990:intron | 40.0% |
| !! | TAATGGATAGAGGCATTGAG+TGG | + | chr6_1:51653800-51653819 | Msa0887990:intron | 40.0% |
| ! | CATTGAGTGGTGGAATTGAT+TGG | + | chr6_1:51653813-51653832 | Msa0887990:intron | 40.0% |
| CATCAGCACACAAGACTATA+TGG | - | chr6_1:51654317-51654336 | None:intergenic | 40.0% | |
| CTTTCCAATCAGCAACTCAT+GGG | + | chr6_1:51654426-51654445 | Msa0887990:CDS | 40.0% | |
| TTTCCAATCAGCAACTCATG+GGG | + | chr6_1:51654427-51654446 | Msa0887990:CDS | 40.0% | |
| ! | ACTGTCAGAGGCATAATTCT+AGG | + | chr6_1:51653510-51653529 | Msa0887990:intron | 40.0% |
| !! | TAATGGATAGAGGCATTGAG+TGG | + | chr6_1:51653800-51653819 | Msa0887990:intron | 40.0% |
| ! | CATTGAGTGGTGGAATTGAT+TGG | + | chr6_1:51653813-51653832 | Msa0887990:intron | 40.0% |
| CATCAGCACACAAGACTATA+TGG | - | chr6_1:51654317-51654336 | None:intergenic | 40.0% | |
| CTTTCCAATCAGCAACTCAT+GGG | + | chr6_1:51654426-51654445 | Msa0887990:CDS | 40.0% | |
| TTTCCAATCAGCAACTCATG+GGG | + | chr6_1:51654427-51654446 | Msa0887990:CDS | 40.0% | |
| TCACATGTTGCAACTGTCAG+AGG | + | chr6_1:51653498-51653517 | Msa0887990:intron | 45.0% | |
| GCAGCCATCTGCTCATAAAA+TGG | - | chr6_1:51653936-51653955 | None:intergenic | 45.0% | |
| ACAGAATTACATCGGGACAC+GGG | - | chr6_1:51654274-51654293 | None:intergenic | 45.0% | |
| GACAGAATTACATCGGGACA+CGG | - | chr6_1:51654275-51654294 | None:intergenic | 45.0% | |
| TTCTGTCTGTGTAGGAACTC+TGG | + | chr6_1:51654367-51654386 | Msa0887990:intron | 45.0% | |
| ! | TGAGTTGCTGATTGGAAAGC+TGG | - | chr6_1:51654425-51654444 | None:intergenic | 45.0% |
| GCTTTCCAATCAGCAACTCA+TGG | + | chr6_1:51654425-51654444 | Msa0887990:CDS | 45.0% | |
| TCACATGTTGCAACTGTCAG+AGG | + | chr6_1:51653498-51653517 | Msa0887990:intron | 45.0% | |
| GCAGCCATCTGCTCATAAAA+TGG | - | chr6_1:51653936-51653955 | None:intergenic | 45.0% | |
| ACAGAATTACATCGGGACAC+GGG | - | chr6_1:51654274-51654293 | None:intergenic | 45.0% | |
| GACAGAATTACATCGGGACA+CGG | - | chr6_1:51654275-51654294 | None:intergenic | 45.0% | |
| TTCTGTCTGTGTAGGAACTC+TGG | + | chr6_1:51654367-51654386 | Msa0887990:intron | 45.0% | |
| ! | TGAGTTGCTGATTGGAAAGC+TGG | - | chr6_1:51654425-51654444 | None:intergenic | 45.0% |
| GCTTTCCAATCAGCAACTCA+TGG | + | chr6_1:51654425-51654444 | Msa0887990:CDS | 45.0% | |
| CAAGGCTTGTGCTCTGTCTT+GGG | - | chr6_1:51653714-51653733 | None:intergenic | 50.0% | |
| !! | TGGATAGAGGCATTGAGTGG+TGG | + | chr6_1:51653803-51653822 | Msa0887990:intron | 50.0% |
| CAGAATTACATCGGGACACG+GGG | - | chr6_1:51654273-51654292 | None:intergenic | 50.0% | |
| ACTCTGGCAAAGTACACTGC+TGG | + | chr6_1:51654383-51654402 | Msa0887990:CDS | 50.0% | |
| TCTCCCCATGAGTTGCTGAT+TGG | - | chr6_1:51654433-51654452 | None:intergenic | 50.0% | |
| ACCTCACAAGAGAGACTGCA+TGG | + | chr6_1:51654477-51654496 | Msa0887990:CDS | 50.0% | |
| CCTCACAAGAGAGACTGCAT+GGG | + | chr6_1:51654478-51654497 | Msa0887990:CDS | 50.0% | |
| CAAGGCTTGTGCTCTGTCTT+GGG | - | chr6_1:51653714-51653733 | None:intergenic | 50.0% | |
| !! | TGGATAGAGGCATTGAGTGG+TGG | + | chr6_1:51653803-51653822 | Msa0887990:intron | 50.0% |
| CAGAATTACATCGGGACACG+GGG | - | chr6_1:51654273-51654292 | None:intergenic | 50.0% | |
| ACTCTGGCAAAGTACACTGC+TGG | + | chr6_1:51654383-51654402 | Msa0887990:CDS | 50.0% | |
| TCTCCCCATGAGTTGCTGAT+TGG | - | chr6_1:51654433-51654452 | None:intergenic | 50.0% | |
| ACCTCACAAGAGAGACTGCA+TGG | + | chr6_1:51654477-51654496 | Msa0887990:CDS | 50.0% | |
| CCTCACAAGAGAGACTGCAT+GGG | + | chr6_1:51654478-51654497 | Msa0887990:CDS | 50.0% | |
| GCAAGGCTTGTGCTCTGTCT+TGG | - | chr6_1:51653715-51653734 | None:intergenic | 55.0% | |
| CCCATGCAGTCTCTCTTGTG+AGG | - | chr6_1:51654481-51654500 | None:intergenic | 55.0% | |
| GAGAGACTGCATGGGAAGCA+TGG | + | chr6_1:51654486-51654505 | Msa0887990:CDS | 55.0% | |
| GCAAGGCTTGTGCTCTGTCT+TGG | - | chr6_1:51653715-51653734 | None:intergenic | 55.0% | |
| CCCATGCAGTCTCTCTTGTG+AGG | - | chr6_1:51654481-51654500 | None:intergenic | 55.0% | |
| GAGAGACTGCATGGGAAGCA+TGG | + | chr6_1:51654486-51654505 | Msa0887990:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_1 | gene | 51653325 | 51654541 | 51653325 | ID=Msa0887990;Name=Msa0887990 |
| chr6_1 | mRNA | 51653325 | 51654541 | 51653325 | ID=Msa0887990-mRNA-1;Parent=Msa0887990;Name=Msa0887990-mRNA-1;_AED=0.13;_eAED=0.13;_QI=0|0|0|0.5|0|0.25|4|0|101 |
| chr6_1 | exon | 51653325 | 51653333 | 51653325 | ID=Msa0887990-mRNA-1:exon:10437;Parent=Msa0887990-mRNA-1 |
| chr6_1 | exon | 51653875 | 51653881 | 51653875 | ID=Msa0887990-mRNA-1:exon:10438;Parent=Msa0887990-mRNA-1 |
| chr6_1 | exon | 51653901 | 51654029 | 51653901 | ID=Msa0887990-mRNA-1:exon:10439;Parent=Msa0887990-mRNA-1 |
| chr6_1 | exon | 51654381 | 51654541 | 51654381 | ID=Msa0887990-mRNA-1:exon:10440;Parent=Msa0887990-mRNA-1 |
| chr6_1 | CDS | 51653325 | 51653333 | 51653325 | ID=Msa0887990-mRNA-1:cds;Parent=Msa0887990-mRNA-1 |
| chr6_1 | CDS | 51653875 | 51653881 | 51653875 | ID=Msa0887990-mRNA-1:cds;Parent=Msa0887990-mRNA-1 |
| chr6_1 | CDS | 51653901 | 51654029 | 51653901 | ID=Msa0887990-mRNA-1:cds;Parent=Msa0887990-mRNA-1 |
| chr6_1 | CDS | 51654381 | 51654541 | 51654381 | ID=Msa0887990-mRNA-1:cds;Parent=Msa0887990-mRNA-1 |
| Gene Sequence |
| Protein sequence |
