AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1111370

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1111370 MtrunA17_Chr7g0246231 97.674 215 4 1 1 214 1 215 3.48e-151 418
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1111370 AT2G45520.1 47.087 206 95 5 1 202 1 196 1.49e-33 119

Find 69 sgRNAs with CRISPR-Local

Find 216 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATATTTCAAAATTGTGTAAA+AGG 0.203366 7_3:-57092494 Msa1111370:five_prime_UTR
CTCAAGGAATTAGTATTATT+AGG 0.207123 7_3:-57092423 Msa1111370:five_prime_UTR
GGTCGAAGACGATGAAATTT+TGG 0.232870 7_3:-57089608 Msa1111370:CDS
GGGCAAGAAAAGATAAAATT+TGG 0.251556 7_3:-57089577 Msa1111370:CDS
GGAAAGAGGTTAAAGATCTT+AGG 0.273425 7_3:-57090330 Msa1111370:CDS
TCAAGGAATTAGTATTATTA+GGG 0.306939 7_3:-57092422 Msa1111370:five_prime_UTR
CATGTCAAAACTAAATTTAC+TGG 0.322336 7_3:-57088919 Msa1111370:three_prime_UTR
AATTTCACTAAACACCAAAA+TGG 0.329376 7_3:-57092227 Msa1111370:intron
TCCGAGCCATAGAGGATTAC+AGG 0.332926 7_3:-57089388 Msa1111370:CDS
AGAGGAGAGAATGGCAGGTA+AGG 0.343403 7_3:-57092366 Msa1111370:exon
GGAGGTGGACGGTGATTTCC+AGG 0.352606 7_3:+57089341 None:intergenic
GCATCGAGTTGAGAAGATTT+AGG 0.369199 7_3:+57092278 None:intergenic
TCATTTGCAGCACATTCTTA+AGG 0.370449 7_3:-57089295 Msa1111370:three_prime_UTR
GCGACTCCTGTAATCCTCTA+TGG 0.378754 7_3:+57089382 None:intergenic
GGGAAGAGAAGGAACCATTT+TGG 0.383121 7_3:+57092213 None:intergenic
GTTTAGTGAAATTCATGATT+TGG 0.383295 7_3:+57092237 None:intergenic
CATGATTTGGCGAAGTTTGA+AGG 0.399350 7_3:+57092250 None:intergenic
AAGATTTAGGCGGTGGAGGT+AGG 0.400547 7_3:+57092291 None:intergenic
TGGAATTGCTCAGGTGAAAC+AGG 0.412517 7_3:-57090440 Msa1111370:intron
GAGAGAGAGGAGAGAATGGC+AGG 0.419997 7_3:-57092371 Msa1111370:exon
TGAGAAGATTTAGGCGGTGG+AGG 0.422844 7_3:+57092287 None:intergenic
CATCCTAGTAGATAAGCTAT+AGG 0.427754 7_3:+57089097 None:intergenic
AAGGATACTCTGCTTACCTA+TGG 0.433948 7_3:-57089276 Msa1111370:three_prime_UTR
GAGGAGAGAATGGCAGGTAA+GGG 0.434457 7_3:-57092365 Msa1111370:exon
AGATTTAGGCGGTGGAGGTA+GGG 0.444647 7_3:+57092292 None:intergenic
TAAAGATCTTAGGTTTGCAT+TGG 0.453323 7_3:-57090320 Msa1111370:CDS
AAAGGAGAGAGAAGAACTAC+AGG 0.456354 7_3:-57092337 Msa1111370:CDS
AAAGCATGGGCATCGAGGCC+TGG 0.458790 7_3:-57089359 Msa1111370:CDS
AAGCCTATAGCTTATCTACT+AGG 0.470840 7_3:-57089100 Msa1111370:three_prime_UTR
AAAGACAAGAAATTTGATGA+TGG 0.471509 7_3:-57092108 Msa1111370:CDS
TGGCAGGTAAGGGAAGGAAA+AGG 0.500893 7_3:-57092355 Msa1111370:CDS
TCCGATGTAGTGACTGGAGG+TGG 0.506470 7_3:+57089326 None:intergenic
TCCTGTAATCCTCTATGGCT+CGG 0.506713 7_3:+57089387 None:intergenic
AGTTGAGAAGATTTAGGCGG+TGG 0.512559 7_3:+57092284 None:intergenic
AGGCGGTGGAGGTAGGGTGG+TGG 0.517230 7_3:+57092298 None:intergenic
AGAGAATGGCAGGTAAGGGA+AGG 0.521841 7_3:-57092361 Msa1111370:exon
TAAGATTCCGATGTAGTGAC+TGG 0.532753 7_3:+57089320 None:intergenic
AAGACAAGAAATTTGATGAT+GGG 0.532950 7_3:-57092107 Msa1111370:CDS
TTTAGGCGGTGGAGGTAGGG+TGG 0.533380 7_3:+57092295 None:intergenic
TGATACTAGTGAACAATTGA+AGG 0.543776 7_3:-57090416 Msa1111370:CDS
ATTACAGGAGTCGCAAAGCA+TGG 0.550905 7_3:-57089373 Msa1111370:CDS
TCTTAGGTTTGCATTGGACG+AGG 0.556136 7_3:-57090314 Msa1111370:CDS
GAATGAAAGATAACTTCGGT+GGG 0.561544 7_3:+57089539 None:intergenic
ATGATTTGGCGAAGTTTGAA+GGG 0.565028 7_3:+57092251 None:intergenic
ACAGGGGTTAAAGATTTCGC+AGG 0.566176 7_3:-57089435 Msa1111370:intron
CTGGATTCGAAGCAGAACCT+TGG 0.569904 7_3:-57092539 Msa1111370:five_prime_UTR
AGGATACTCTGCTTACCTAT+GGG 0.572377 7_3:-57089275 Msa1111370:three_prime_UTR
GGAATGAAAGATAACTTCGG+TGG 0.584154 7_3:+57089538 None:intergenic
AGCTGTTCATCACTGTGTTG+TGG 0.585923 7_3:+57090391 None:intergenic
CAAATAAGAGAAATTTGACA+TGG 0.594434 7_3:-57089206 Msa1111370:three_prime_UTR
TTACAGGAGTCGCAAAGCAT+GGG 0.595725 7_3:-57089372 Msa1111370:CDS
ACGCTTCACAATACTCCCAT+AGG 0.602844 7_3:+57089260 None:intergenic
GTCAAAACTAAATTTACTGG+CGG 0.605140 7_3:-57088916 Msa1111370:three_prime_UTR
GAAAATTGCTAAGAACCTCA+AGG 0.609748 7_3:-57092439 Msa1111370:five_prime_UTR
TCTCCATTCAAAAGCAACGT+AGG 0.613311 7_3:-57089149 Msa1111370:three_prime_UTR
CTAATAATACTAATTCCTTG+AGG 0.618979 7_3:+57092424 None:intergenic
TTAGGAATGAAAGATAACTT+CGG 0.619165 7_3:+57089535 None:intergenic
ACTTAGACTCCGAGCCATAG+AGG 0.620411 7_3:-57089396 Msa1111370:CDS
TTCTTGTCTTTCGATAAACC+AGG 0.628311 7_3:+57092120 None:intergenic
AAGAACTACAGGGCTGCGCA+CGG 0.637052 7_3:-57092326 Msa1111370:CDS
TCCACCTCCAGTCACTACAT+CGG 0.650543 7_3:-57089327 Msa1111370:CDS
GTCGCAAAGCATGGGCATCG+AGG 0.677594 7_3:-57089364 Msa1111370:CDS
AACTACAGGGCTGCGCACGG+TGG 0.688504 7_3:-57092323 Msa1111370:CDS
GGAATTGCTCAGGTGAAACA+GGG 0.694260 7_3:-57090439 Msa1111370:intron
AAGGAGAGAGAAGAACTACA+GGG 0.694512 7_3:-57092336 Msa1111370:CDS
GATTCCGATGTAGTGACTGG+AGG 0.694574 7_3:+57089323 None:intergenic
ATGTAGTGACTGGAGGTGGA+CGG 0.694888 7_3:+57089330 None:intergenic
TCGAGTTGAGAAGATTTAGG+CGG 0.700818 7_3:+57092281 None:intergenic
AATGAAAGATAACTTCGGTG+GGG 0.702208 7_3:+57089540 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATTTCAAAATTGTGTAAA+AGG - chr7_3:57088958-57088977 Msa1111370:three_prime_UTR 15.0%
!!! ATGTTTTTCTTCTTATTTTT+TGG - chr7_3:57089392-57089411 Msa1111370:CDS 15.0%
!! ATTTAAACTACATAATATCA+TGG + chr7_3:57091418-57091437 None:intergenic 15.0%
!! ATTAATATCTTCAAACTAAA+AGG + chr7_3:57091503-57091522 None:intergenic 15.0%
!!! AAAATATTTTTCTTGTATAC+AGG - chr7_3:57091999-57092018 Msa1111370:intron 15.0%
!!! AAATATTTTTCTTGTATACA+GGG - chr7_3:57092000-57092019 Msa1111370:intron 15.0%
!!! TTTTTTTTTTTGGATAACCA+AGG + chr7_3:57088933-57088952 None:intergenic 20.0%
!!! TTCTTAGCAATTTTCTTTAA+CGG + chr7_3:57089008-57089027 None:intergenic 20.0%
!! TCAAGGAATTAGTATTATTA+GGG - chr7_3:57089030-57089049 Msa1111370:three_prime_UTR 20.0%
!! AAGAGTAAAAAAAATTGAAG+CGG + chr7_3:57089277-57089296 None:intergenic 20.0%
!!! TGAATTGATGATTATTGTTT+TGG - chr7_3:57089626-57089645 Msa1111370:CDS 20.0%
!! TGTTACGTAAAGATTTATTA+TGG - chr7_3:57089656-57089675 Msa1111370:intron 20.0%
!! GTTACGTAAAGATTTATTAT+GGG - chr7_3:57089657-57089676 Msa1111370:intron 20.0%
!! TAAAGATTTATTATGGGATT+GGG - chr7_3:57089663-57089682 Msa1111370:intron 20.0%
!! CTTATTATGATAAACACTTA+TGG - chr7_3:57089780-57089799 Msa1111370:intron 20.0%
!! GATAAGCACTTATATTATTA+GGG + chr7_3:57090019-57090038 None:intergenic 20.0%
!! AGATAAGCACTTATATTATT+AGG + chr7_3:57090020-57090039 None:intergenic 20.0%
!! AGAATAAGAAAAAAAGAAAG+AGG - chr7_3:57091101-57091120 Msa1111370:intron 20.0%
!! ATTAAAATGGACAAATAAGT+AGG + chr7_3:57091222-57091241 None:intergenic 20.0%
!!! TCCATTTTAATGAGTTTAAA+TGG - chr7_3:57091231-57091250 Msa1111370:intron 20.0%
!! TCCATTTAAACTCATTAAAA+TGG + chr7_3:57091235-57091254 None:intergenic 20.0%
!! GATTGGATAAAAATATAAAC+TGG + chr7_3:57091290-57091309 None:intergenic 20.0%
!! TATTTCCTTAAAATTGCAAA+TGG - chr7_3:57091326-57091345 Msa1111370:intron 20.0%
!!! ATATCTCAAAGATTTTATAC+TGG + chr7_3:57091363-57091382 None:intergenic 20.0%
!! ATTGCAATATGAAGAATTTA+TGG - chr7_3:57091381-57091400 Msa1111370:intron 20.0%
!!! TTGATTGTTATTGTAGTATA+TGG - chr7_3:57091655-57091674 Msa1111370:intron 20.0%
!!! TAGCTTATTTTTATCTTTCA+TGG - chr7_3:57091779-57091798 Msa1111370:intron 20.0%
!!! GAATTTAAAGTACTTACTTT+AGG + chr7_3:57091938-57091957 None:intergenic 20.0%
!!! AATATTTTTCTTGTATACAG+GGG - chr7_3:57092001-57092020 Msa1111370:intron 20.0%
!!! TCTTTAATCTATGTTTTCTT+TGG - chr7_3:57092451-57092470 Msa1111370:five_prime_UTR 20.0%
! CTAATAATACTAATTCCTTG+AGG + chr7_3:57089031-57089050 None:intergenic 25.0%
! CTCAAGGAATTAGTATTATT+AGG - chr7_3:57089029-57089048 Msa1111370:three_prime_UTR 25.0%
! GTTTAGTGAAATTCATGATT+TGG + chr7_3:57089218-57089237 None:intergenic 25.0%
! AATTTCACTAAACACCAAAA+TGG - chr7_3:57089225-57089244 Msa1111370:three_prime_UTR 25.0%
! AAAAAAAATTGAAGCGGAAA+AGG + chr7_3:57089271-57089290 None:intergenic 25.0%
! AAAGACAAGAAATTTGATGA+TGG - chr7_3:57089344-57089363 Msa1111370:CDS 25.0%
!! AAGACAAGAAATTTGATGAT+GGG - chr7_3:57089345-57089364 Msa1111370:CDS 25.0%
! GTTAGTGATAAATGAAATTG+AGG - chr7_3:57089479-57089498 Msa1111370:intron 25.0%
! GTAAAGATTTATTATGGGAT+TGG - chr7_3:57089662-57089681 Msa1111370:intron 25.0%
! AAAGATTTATTATGGGATTG+GGG - chr7_3:57089664-57089683 Msa1111370:intron 25.0%
! TTATATTATTAGGGTCTGTT+AGG + chr7_3:57090010-57090029 None:intergenic 25.0%
!!! TGTACTGATGATTATTTTCT+TGG - chr7_3:57090368-57090387 Msa1111370:CDS 25.0%
!!! GTACTGATGATTATTTTCTT+GGG - chr7_3:57090369-57090388 Msa1111370:CDS 25.0%
! AATATGCAAAGCACAAAAAA+GGG + chr7_3:57090684-57090703 None:intergenic 25.0%
! AAGAGTTAACATAAATTGGA+AGG + chr7_3:57090767-57090786 None:intergenic 25.0%
! AGTCAAGAGTTAACATAAAT+TGG + chr7_3:57090771-57090790 None:intergenic 25.0%
!!! TTAGAAATTTCCGTTTTTCA+TGG + chr7_3:57090857-57090876 None:intergenic 25.0%
! ACAACACTAAAATAACAGAT+TGG + chr7_3:57091307-57091326 None:intergenic 25.0%
! GTAGTTTAAATTAAGCACTA+TGG - chr7_3:57091427-57091446 Msa1111370:intron 25.0%
! ACAATACAGATAACAAACAT+TGG + chr7_3:57091594-57091613 None:intergenic 25.0%
!!! AATCAAAGCATTTTCTAAGT+AGG + chr7_3:57091641-57091660 None:intergenic 25.0%
!!! ATGAAATTTTGGAATTTCCT+GGG - chr7_3:57091855-57091874 Msa1111370:intron 25.0%
! TTAGGAATGAAAGATAACTT+CGG + chr7_3:57091920-57091939 None:intergenic 25.0%
! CAAATAAGAGAAATTTGACA+TGG - chr7_3:57092246-57092265 Msa1111370:CDS 25.0%
! CATGTCAAAACTAAATTTAC+TGG - chr7_3:57092533-57092552 Msa1111370:five_prime_UTR 25.0%
!!! GGTGTCGTTTTGAAATATTA+GGG + chr7_3:57088987-57089006 None:intergenic 30.0%
AGTGATAAATGAAATTGAGG+TGG - chr7_3:57089482-57089501 Msa1111370:intron 30.0%
GTGATAAATGAAATTGAGGT+GGG - chr7_3:57089483-57089502 Msa1111370:intron 30.0%
TTCAGATGTTTATCCGAATA+GGG + chr7_3:57089690-57089709 None:intergenic 30.0%
ATTCAGATGTTTATCCGAAT+AGG + chr7_3:57089691-57089710 None:intergenic 30.0%
ACATCTGAATTAAGAGCTTA+TGG - chr7_3:57089701-57089720 Msa1111370:intron 30.0%
CGAGAATTTATGAAATAAGC+TGG - chr7_3:57089894-57089913 Msa1111370:intron 30.0%
TTAGGAGAACTTATGAAAAC+AGG + chr7_3:57089945-57089964 None:intergenic 30.0%
ACTTATTTGAGCTTATCGTA+TGG + chr7_3:57089983-57090002 None:intergenic 30.0%
!!! TTTGCACTTTGCTTTTTCAT+TGG - chr7_3:57090258-57090277 Msa1111370:intron 30.0%
!!! TTGCTTTTTCATTGGCTATT+TGG - chr7_3:57090266-57090285 Msa1111370:intron 30.0%
!! CTGTATTTGAGTTGCTTAAA+GGG - chr7_3:57090293-57090312 Msa1111370:CDS 30.0%
!! TGTATTTGAGTTGCTTAAAG+GGG - chr7_3:57090294-57090313 Msa1111370:CDS 30.0%
TGAAGATTTATCATGGGATT+TGG - chr7_3:57090405-57090424 Msa1111370:CDS 30.0%
GAAGATTTATCATGGGATTT+GGG - chr7_3:57090406-57090425 Msa1111370:CDS 30.0%
TTAAGCTGTATATCCAAACA+GGG + chr7_3:57090432-57090451 None:intergenic 30.0%
ATTAAGCTGTATATCCAAAC+AGG + chr7_3:57090433-57090452 None:intergenic 30.0%
GAATATGCAAAGCACAAAAA+AGG + chr7_3:57090685-57090704 None:intergenic 30.0%
TATTCAGTGTTTGCATTTCT+TGG - chr7_3:57090700-57090719 Msa1111370:intron 30.0%
CCATTCAATACAATGAACAT+CGG + chr7_3:57090949-57090968 None:intergenic 30.0%
TCATTATCTCTGTCATGTAA+AGG + chr7_3:57090992-57091011 None:intergenic 30.0%
TTACATGACAGAGATAATGA+TGG - chr7_3:57090992-57091011 Msa1111370:intron 30.0%
TGATACTAGTGAACAATTGA+AGG - chr7_3:57091036-57091055 Msa1111370:intron 30.0%
GAAAAAAAGAAAGAGGAAAG+AGG - chr7_3:57091108-57091127 Msa1111370:intron 30.0%
TAAAGATCTTAGGTTTGCAT+TGG - chr7_3:57091132-57091151 Msa1111370:intron 30.0%
AAACTCCCAGCTAAAAAAAA+AGG - chr7_3:57091168-57091187 Msa1111370:intron 30.0%
! ATGCACCATTTGCAATTTTA+AGG + chr7_3:57091334-57091353 None:intergenic 30.0%
!! TATGGTCTTATTGTTCAGTT+TGG - chr7_3:57091445-57091464 Msa1111370:intron 30.0%
ATTGTTCAGTTTGGATTTGA+TGG - chr7_3:57091454-57091473 Msa1111370:intron 30.0%
ACAACAACAAAAACACAAGT+AGG + chr7_3:57091683-57091702 None:intergenic 30.0%
!!! TTTTGTTGTTGTGCCTTATA+TGG - chr7_3:57091691-57091710 Msa1111370:intron 30.0%
TCTTTCATGGTAAATTCTTC+AGG - chr7_3:57091792-57091811 Msa1111370:intron 30.0%
! GAAAAAGAAGAAGCACAAAA+AGG - chr7_3:57091823-57091842 Msa1111370:intron 30.0%
!!! GATGAAATTTTGGAATTTCC+TGG - chr7_3:57091854-57091873 Msa1111370:intron 30.0%
! AATTTTATCTTTTCTTGCCC+AGG + chr7_3:57091875-57091894 None:intergenic 30.0%
GGGCAAGAAAAGATAAAATT+TGG - chr7_3:57091875-57091894 Msa1111370:intron 30.0%
!! AAATTCTTAGCTTTACCCAA+TGG - chr7_3:57091952-57091971 Msa1111370:intron 30.0%
TAAGTATAGCATGATCCATT+GGG + chr7_3:57091970-57091989 None:intergenic 30.0%
ATAAGTATAGCATGATCCAT+TGG + chr7_3:57091971-57091990 None:intergenic 30.0%
TCATGCTATACTTATTTGTG+TGG - chr7_3:57091976-57091995 Msa1111370:intron 30.0%
!!! CGGTGTCGTTTTGAAATATT+AGG + chr7_3:57088988-57089007 None:intergenic 35.0%
GAAAATTGCTAAGAACCTCA+AGG - chr7_3:57089013-57089032 Msa1111370:three_prime_UTR 35.0%
! ATGATTTGGCGAAGTTTGAA+GGG + chr7_3:57089204-57089223 None:intergenic 35.0%
TTCTTGTCTTTCGATAAACC+AGG + chr7_3:57089335-57089354 None:intergenic 35.0%
TGAGCACATGATGAATTCAT+TGG - chr7_3:57089582-57089601 Msa1111370:CDS 35.0%
TGGCATAAATGTGACTGTTT+AGG + chr7_3:57089963-57089982 None:intergenic 35.0%
! TGTAAATAAGCTCTCTAGGA+TGG + chr7_3:57090117-57090136 None:intergenic 35.0%
GACATGTAAATAAGCTCTCT+AGG + chr7_3:57090121-57090140 None:intergenic 35.0%
GCATATTAAAGCTTACCAAC+TGG + chr7_3:57090192-57090211 None:intergenic 35.0%
GAATATGTAAAGCACAACGA+GGG + chr7_3:57090234-57090253 None:intergenic 35.0%
TGAATATGTAAAGCACAACG+AGG + chr7_3:57090235-57090254 None:intergenic 35.0%
!! GCTGTATTTGAGTTGCTTAA+AGG - chr7_3:57090292-57090311 Msa1111370:CDS 35.0%
! AAGGGGTCTTATAGATATGT+TGG - chr7_3:57090311-57090330 Msa1111370:CDS 35.0%
! ATTATTTTCTTGGGTGAGCA+TGG - chr7_3:57090378-57090397 Msa1111370:CDS 35.0%
TGGCATGTGAAGATTTATCA+TGG - chr7_3:57090398-57090417 Msa1111370:CDS 35.0%
GGCATGTGAAGATTTATCAT+GGG - chr7_3:57090399-57090418 Msa1111370:CDS 35.0%
AAGCACTTGTGAGACTATTT+CGG + chr7_3:57090622-57090641 None:intergenic 35.0%
AAAAAAGGGTCTGTTTGGAT+GGG + chr7_3:57090670-57090689 None:intergenic 35.0%
AAAATGGCCTCCATGAAAAA+CGG - chr7_3:57090844-57090863 Msa1111370:intron 35.0%
!! GAAATTTCCGTTTTTCATGG+AGG + chr7_3:57090854-57090873 None:intergenic 35.0%
CCGATGTTCATTGTATTGAA+TGG - chr7_3:57090946-57090965 Msa1111370:intron 35.0%
! AGATAATGATGGAATTGCTC+AGG - chr7_3:57091003-57091022 Msa1111370:intron 35.0%
GGAAAGAGGTTAAAGATCTT+AGG - chr7_3:57091122-57091141 Msa1111370:intron 35.0%
! TATTTACTCTGCTTGATGAC+CGG - chr7_3:57091529-57091548 Msa1111370:intron 35.0%
!! CAAAGCATTTTCTAAGTAGG+TGG + chr7_3:57091638-57091657 None:intergenic 35.0%
CCAACTTCAAATGCCATATA+AGG + chr7_3:57091707-57091726 None:intergenic 35.0%
! CCTTATATGGCATTTGAAGT+TGG - chr7_3:57091704-57091723 Msa1111370:intron 35.0%
AATGAAAGATAACTTCGGTG+GGG + chr7_3:57091915-57091934 None:intergenic 35.0%
GAATGAAAGATAACTTCGGT+GGG + chr7_3:57091916-57091935 None:intergenic 35.0%
TCATTTGCAGCACATTCTTA+AGG - chr7_3:57092157-57092176 Msa1111370:intron 35.0%
!! CTTTTTCATATTTTCCCCCT+GGG - chr7_3:57092269-57092288 Msa1111370:CDS 35.0%
AAGCCTATAGCTTATCTACT+AGG - chr7_3:57092352-57092371 Msa1111370:CDS 35.0%
CATCCTAGTAGATAAGCTAT+AGG + chr7_3:57092358-57092377 None:intergenic 35.0%
AAAGGAGAGAGAAGAACTAC+AGG - chr7_3:57089115-57089134 Msa1111370:three_prime_UTR 40.0%
AAGGAGAGAGAAGAACTACA+GGG - chr7_3:57089116-57089135 Msa1111370:three_prime_UTR 40.0%
!! TCGAGTTGAGAAGATTTAGG+CGG + chr7_3:57089174-57089193 None:intergenic 40.0%
!! GCATCGAGTTGAGAAGATTT+AGG + chr7_3:57089177-57089196 None:intergenic 40.0%
! CATGATTTGGCGAAGTTTGA+AGG + chr7_3:57089205-57089224 None:intergenic 40.0%
TTGAAGCGGAAAAGGTGAAA+GGG + chr7_3:57089263-57089282 None:intergenic 40.0%
ATTGAAGCGGAAAAGGTGAA+AGG + chr7_3:57089264-57089283 None:intergenic 40.0%
! CTCATGTTTTCAGATTCTCC+TGG - chr7_3:57089314-57089333 Msa1111370:exon 40.0%
GTGGGTTTAATTGTGTTTGC+TGG - chr7_3:57089501-57089520 Msa1111370:intron 40.0%
! GAGCTTATGGTCTTAACACT+AGG - chr7_3:57089714-57089733 Msa1111370:intron 40.0%
GTCTTAACACTAGGTCTGTT+TGG - chr7_3:57089723-57089742 Msa1111370:intron 40.0%
TGAGCACATGATGCATTCAT+TGG - chr7_3:57090336-57090355 Msa1111370:CDS 40.0%
!! GTTGTTTTCAGAAGCTATGC+CGG - chr7_3:57090556-57090575 Msa1111370:intron 40.0%
GTGTGTTTGAACTTACCAAC+TGG + chr7_3:57090648-57090667 None:intergenic 40.0%
CAAAAAAGGGTCTGTTTGGA+TGG + chr7_3:57090671-57090690 None:intergenic 40.0%
AGCACAAAAAAGGGTCTGTT+TGG + chr7_3:57090675-57090694 None:intergenic 40.0%
!!! GCGCTCCTTTTTTTTTAGCT+GGG + chr7_3:57091176-57091195 None:intergenic 40.0%
!!! TGCGCTCCTTTTTTTTTAGC+TGG + chr7_3:57091177-57091196 None:intergenic 40.0%
! GGTCGAAGACGATGAAATTT+TGG - chr7_3:57091844-57091863 Msa1111370:intron 40.0%
GGAATGAAAGATAACTTCGG+TGG + chr7_3:57091917-57091936 None:intergenic 40.0%
TAAGATTCCGATGTAGTGAC+TGG + chr7_3:57092135-57092154 None:intergenic 40.0%
AAGGATACTCTGCTTACCTA+TGG - chr7_3:57092176-57092195 Msa1111370:intron 40.0%
AGGATACTCTGCTTACCTAT+GGG - chr7_3:57092177-57092196 Msa1111370:intron 40.0%
!!! GCTTTTTCATATTTTCCCCC+TGG - chr7_3:57092268-57092287 Msa1111370:CDS 40.0%
TCTCCATTCAAAAGCAACGT+AGG - chr7_3:57092303-57092322 Msa1111370:CDS 40.0%
!!! CAACCTACGTTGCTTTTGAA+TGG + chr7_3:57092309-57092328 None:intergenic 40.0%
AGTTGAGAAGATTTAGGCGG+TGG + chr7_3:57089171-57089190 None:intergenic 45.0%
! GGGAAGAGAAGGAACCATTT+TGG + chr7_3:57089242-57089261 None:intergenic 45.0%
AAAGGTGAAAGGGGAAGAGA+AGG + chr7_3:57089253-57089272 None:intergenic 45.0%
TGAAGCGGAAAAGGTGAAAG+GGG + chr7_3:57089262-57089281 None:intergenic 45.0%
AACTGGCATAAGCACTTGTG+AGG + chr7_3:57090175-57090194 None:intergenic 45.0%
TCACAAGTGCTTATGCCAGT+TGG - chr7_3:57090174-57090193 Msa1111370:intron 45.0%
TGACATGTCCATAAGCTCTC+CGG + chr7_3:57090578-57090597 None:intergenic 45.0%
TCACAAGTGCTTATGCCAGT+TGG - chr7_3:57090174-57090193 Msa1111370:intron 45.0%
TGGAATTGCTCAGGTGAAAC+AGG - chr7_3:57091012-57091031 Msa1111370:intron 45.0%
GGAATTGCTCAGGTGAAACA+GGG - chr7_3:57091013-57091032 Msa1111370:intron 45.0%
AGCTGTTCATCACTGTGTTG+TGG + chr7_3:57091064-57091083 None:intergenic 45.0%
TCTTAGGTTTGCATTGGACG+AGG - chr7_3:57091138-57091157 Msa1111370:intron 45.0%
ACAGGGGTTAAAGATTTCGC+AGG - chr7_3:57092017-57092036 Msa1111370:intron 45.0%
TCCTGTAATCCTCTATGGCT+CGG + chr7_3:57092068-57092087 None:intergenic 45.0%
ATTACAGGAGTCGCAAAGCA+TGG - chr7_3:57092079-57092098 Msa1111370:intron 45.0%
TTACAGGAGTCGCAAAGCAT+GGG - chr7_3:57092080-57092099 Msa1111370:intron 45.0%
ACGCTTCACAATACTCCCAT+AGG + chr7_3:57092195-57092214 None:intergenic 45.0%
! TTTCATATTTTCCCCCTGGG+AGG - chr7_3:57092272-57092291 Msa1111370:CDS 45.0%
AGAAAAATTCACCTCCCAGG+GGG + chr7_3:57092286-57092305 None:intergenic 45.0%
GAGAAAAATTCACCTCCCAG+GGG + chr7_3:57092287-57092306 None:intergenic 45.0%
GGAGAAAAATTCACCTCCCA+GGG + chr7_3:57092288-57092307 None:intergenic 45.0%
TGGAGAAAAATTCACCTCCC+AGG + chr7_3:57092289-57092308 None:intergenic 45.0%
!!! AATATTTCATTTTTTTTTTT+TGG + chr7_3:57088943-57088962 None:intergenic 5.0%
!!! AAGTTAAATTTATTTTATAT+AGG - chr7_3:57089844-57089863 Msa1111370:intron 5.0%
!! TATTTAACAAAAAATAAAAA+TGG - chr7_3:57090828-57090847 Msa1111370:intron 5.0%
AGAGAGAGAGAGAGAGAGAG+AGG - chr7_3:57089062-57089081 Msa1111370:three_prime_UTR 50.0%
GAGAGAGAGAGAGGAGAGAA+TGG - chr7_3:57089077-57089096 Msa1111370:three_prime_UTR 50.0%
AGAGGAGAGAATGGCAGGTA+AGG - chr7_3:57089086-57089105 Msa1111370:three_prime_UTR 50.0%
GAGGAGAGAATGGCAGGTAA+GGG - chr7_3:57089087-57089106 Msa1111370:three_prime_UTR 50.0%
AGAGAATGGCAGGTAAGGGA+AGG - chr7_3:57089091-57089110 Msa1111370:three_prime_UTR 50.0%
TGGCAGGTAAGGGAAGGAAA+AGG - chr7_3:57089097-57089116 Msa1111370:three_prime_UTR 50.0%
AGATTTAGGCGGTGGAGGTA+GGG + chr7_3:57089163-57089182 None:intergenic 50.0%
AAGATTTAGGCGGTGGAGGT+AGG + chr7_3:57089164-57089183 None:intergenic 50.0%
TGAGAAGATTTAGGCGGTGG+AGG + chr7_3:57089168-57089187 None:intergenic 50.0%
TATGGGATTGGGGCCCTATT+CGG - chr7_3:57089674-57089693 Msa1111370:intron 50.0%
CAACGAGGGACTGTTTGGAT+GGG + chr7_3:57090220-57090239 None:intergenic 50.0%
ACAACGAGGGACTGTTTGGA+TGG + chr7_3:57090221-57090240 None:intergenic 50.0%
AAGCACAACGAGGGACTGTT+TGG + chr7_3:57090225-57090244 None:intergenic 50.0%
AAGCTATGCCGGAGAGCTTA+TGG - chr7_3:57090567-57090586 Msa1111370:intron 50.0%
TGACCGGTCCAGAGGATATT+CGG - chr7_3:57091545-57091564 Msa1111370:intron 50.0%
ACTCCGAATATCCTCTGGAC+CGG + chr7_3:57091551-57091570 None:intergenic 50.0%
!! TGCTGACTCCGAATATCCTC+TGG + chr7_3:57091556-57091575 None:intergenic 50.0%
ACTTAGACTCCGAGCCATAG+AGG - chr7_3:57092056-57092075 Msa1111370:intron 50.0%
TCCGAGCCATAGAGGATTAC+AGG - chr7_3:57092064-57092083 Msa1111370:intron 50.0%
GCGACTCCTGTAATCCTCTA+TGG + chr7_3:57092073-57092092 None:intergenic 50.0%
ATGTAGTGACTGGAGGTGGA+CGG + chr7_3:57092125-57092144 None:intergenic 50.0%
TCCACCTCCAGTCACTACAT+CGG - chr7_3:57092125-57092144 Msa1111370:CDS 50.0%
GATTCCGATGTAGTGACTGG+AGG + chr7_3:57092132-57092151 None:intergenic 50.0%
GAGAGAGAGGAGAGAATGGC+AGG - chr7_3:57089081-57089100 Msa1111370:three_prime_UTR 55.0%
AAGAACTACAGGGCTGCGCA+CGG - chr7_3:57089126-57089145 Msa1111370:three_prime_UTR 55.0%
! AGGGACTGTTTGGATGGGCT+GGG + chr7_3:57090215-57090234 None:intergenic 55.0%
CATGGGATTTGGGCCCTGTT+TGG - chr7_3:57090416-57090435 Msa1111370:CDS 55.0%
TCCGATGTAGTGACTGGAGG+TGG + chr7_3:57092129-57092148 None:intergenic 55.0%
TTTAGGCGGTGGAGGTAGGG+TGG + chr7_3:57089160-57089179 None:intergenic 60.0%
!! GGGACTGTTTGGATGGGCTG+GGG + chr7_3:57090214-57090233 None:intergenic 60.0%
GAGGGACTGTTTGGATGGGC+TGG + chr7_3:57090216-57090235 None:intergenic 60.0%
! CTGCTTGATGACCGGTCCAG+AGG - chr7_3:57091537-57091556 Msa1111370:intron 60.0%
! GTCGCAAAGCATGGGCATCG+AGG - chr7_3:57092088-57092107 Msa1111370:intron 60.0%
!! AAAGCATGGGCATCGAGGCC+TGG - chr7_3:57092093-57092112 Msa1111370:intron 60.0%
GGAGGTGGACGGTGATTTCC+AGG + chr7_3:57092114-57092133 None:intergenic 60.0%
AACTACAGGGCTGCGCACGG+TGG - chr7_3:57089129-57089148 Msa1111370:three_prime_UTR 65.0%
AGGCGGTGGAGGTAGGGTGG+TGG + chr7_3:57089157-57089176 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 57088916 57092558 57088916 ID=Msa1111370;Name=Msa1111370
chr7_3 mRNA 57088916 57092558 57088916 ID=Msa1111370-mRNA-1;Parent=Msa1111370;Name=Msa1111370-mRNA-1;_AED=0.07;_eAED=0.07;_QI=180|1|1|1|1|1|5|403|214
chr7_3 exon 57088916 57089453 57088916 ID=Msa1111370-mRNA-1:exon:12215;Parent=Msa1111370-mRNA-1
chr7_3 exon 57089534 57089660 57089534 ID=Msa1111370-mRNA-1:exon:12214;Parent=Msa1111370-mRNA-1
chr7_3 exon 57090271 57090449 57090271 ID=Msa1111370-mRNA-1:exon:12213;Parent=Msa1111370-mRNA-1
chr7_3 exon 57092095 57092147 57092095 ID=Msa1111370-mRNA-1:exon:12212;Parent=Msa1111370-mRNA-1
chr7_3 exon 57092228 57092558 57092228 ID=Msa1111370-mRNA-1:exon:12211;Parent=Msa1111370-mRNA-1
chr7_3 five_prime_UTR 57092379 57092558 57092379 ID=Msa1111370-mRNA-1:five_prime_utr;Parent=Msa1111370-mRNA-1
chr7_3 CDS 57092228 57092378 57092228 ID=Msa1111370-mRNA-1:cds;Parent=Msa1111370-mRNA-1
chr7_3 CDS 57092095 57092147 57092095 ID=Msa1111370-mRNA-1:cds;Parent=Msa1111370-mRNA-1
chr7_3 CDS 57090271 57090449 57090271 ID=Msa1111370-mRNA-1:cds;Parent=Msa1111370-mRNA-1
chr7_3 CDS 57089534 57089660 57089534 ID=Msa1111370-mRNA-1:cds;Parent=Msa1111370-mRNA-1
chr7_3 CDS 57089319 57089453 57089319 ID=Msa1111370-mRNA-1:cds;Parent=Msa1111370-mRNA-1
chr7_3 three_prime_UTR 57088916 57089318 57088916 ID=Msa1111370-mRNA-1:three_prime_utr;Parent=Msa1111370-mRNA-1
Gene Sequence

>Msa1111370

ATGGCAGGTAAGGGAAGGAAAAGGAGAGAGAAGAACTACAGGGCTGCGCACGGTGGCTCCACCACCCTACCTCCACCGCCTAAATCTTCTCAACTCGATGCTTTACCCTTCAAACTTCGCCAAATCATGAATTTCACTAAACACCAAAATGATTCTCCTGGTTTATCGAAAGACAAGAAATTTGATGATGGGCATGTAAAAAATGTGAAACAGGGTGATACTAGTGAACAATTGAAGGCACCACAACACAGTGATGAACAGCTTAGTGAAAATGATGATAAGAATAAGAAAAAAAGAAAGAGGAAAGAGGTTAAAGATCTTAGGTTTGCATTGGACGAGGATAAAACAAACTCCCAGCTAAAAAAAAAGGAGCGCAAAAAGAAGTATGAAGCGAAAAAGAAGAAGCACAAAAAGGTCGAAGACGATGAAATTTTGGAATTTCCTGGGCAAGAAAAGATAAAATTTGGAGATATTGTACAAGCCCCACCGAAGTTATCTTTCATTCCTAAAGGGTTAAAGATTTCGCAGGATGCTTCTCATGAGAGACTTAGACTCCGAGCCATAGAGGATTACAGGAGTCGCAAAGCATGGGCATCGAGGCCTGGAAATCACCGTCCACCTCCAGTCACTACATCGGAATCTTAA
Protein sequence

>Msa1111370

MAGKGRKRREKNYRAAHGGSTTLPPPPKSSQLDALPFKLRQIMNFTKHQNDSPGLSKDKKFDDGHVKNVKQGDTSEQLKAPQHSDEQLSENDDKNKKKRKRKEVKDLRFALDEDKTNSQLKKKERKKKYEAKKKKHKKVEDDEILEFPGQEKIKFGDIVQAPPKLSFIPKGLKISQDASHERLRLRAIEDYRSRKAWASRPGNHRPPPVTTSES*