Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
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Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
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Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
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Gene ID | Type | Classification |
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Gene ID | Type | Classification |
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Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0032260 | Msa1059280 | 0.809841 | 1.549916e-50 | -8.615850e-47 |
Msa0127310 | Msa1059280 | 0.810669 | 1.027590e-50 | -8.615850e-47 |
Msa0165950 | Msa1059280 | 0.829790 | 4.226857e-55 | -8.615850e-47 |
Msa0199690 | Msa1059280 | 0.803612 | 3.208741e-49 | -8.615850e-47 |
Msa0458060 | Msa1059280 | 0.806895 | 6.588261e-50 | -8.615850e-47 |
Msa0481480 | Msa1059280 | 0.850742 | 1.394467e-60 | -8.615850e-47 |
Msa0994290 | Msa1059280 | 0.808163 | 3.545437e-50 | -8.615850e-47 |
Msa1019240 | Msa1059280 | 0.807669 | 4.515313e-50 | -8.615850e-47 |
Msa1019260 | Msa1059280 | 0.806051 | 9.924763e-50 | -8.615850e-47 |
Msa1059280 | Msa1104210 | 0.808171 | 3.530548e-50 | -8.615850e-47 |
Msa1059280 | Msa1111370 | 0.812455 | 4.203352e-51 | -8.615850e-47 |
Msa1059280 | Msa1166860 | 0.803950 | 2.729933e-49 | -8.615850e-47 |
Msa1059280 | Msa1166870 | 0.809119 | 2.215242e-50 | -8.615850e-47 |
Msa1059280 | Msa1179980 | 0.801900 | 7.237845e-49 | -8.615850e-47 |
Msa1059280 | Msa1184370 | 0.819709 | 1.007499e-52 | -8.615850e-47 |
Msa1059280 | Msa1227690 | 0.801637 | 8.194919e-49 | -8.615850e-47 |
Msa1059280 | Msa1257510 | 0.802877 | 4.553660e-49 | -8.615850e-47 |
Msa1059280 | Msa1295490 | -0.807981 | 3.875091e-50 | -8.615850e-47 |
Msa1059280 | Msa1307950 | 0.801710 | 7.918758e-49 | -8.615850e-47 |
Msa1059280 | Msa1345450 | 0.804095 | 2.546017e-49 | -8.615850e-47 |
Msa1059280 | Msa1369190 | 0.800920 | 1.149228e-48 | -8.615850e-47 |
Msa1059280 | Msa1370860 | 0.800460 | 1.426437e-48 | -8.615850e-47 |
Msa1059280 | Msa1404190 | 0.801632 | 8.216929e-49 | -8.615850e-47 |
Msa1059280 | Msa1442850 | 0.825205 | 5.320616e-54 | -8.615850e-47 |
Msa1059280 | Msa1450280 | 0.829699 | 4.448941e-55 | -8.615850e-47 |
Msa1059280 | Msa1465080 | 0.822039 | 2.931142e-53 | -8.615850e-47 |
Msa0280430 | Msa1059280 | 0.806873 | 6.657435e-50 | -8.615850e-47 |
Msa0291520 | Msa1059280 | 0.800673 | 1.290922e-48 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
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Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
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Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
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Find 21 sgRNAs with CRISPR-Local
Find 288 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GCTTTGAATCTCTGTTCTTT+TGG | 0.209306 | 7_2:+45224521 | None:intergenic |
AAGGTGAAGCTTTGGGTTTA+TGG | 0.299187 | 7_2:-45223881 | Msa1059280:CDS |
AGGTGAAGCTTTGGGTTTAT+GGG | 0.308249 | 7_2:-45223880 | Msa1059280:CDS |
AGACATTGGGAGAATGGCTT+TGG | 0.338465 | 7_2:-45223305 | Msa1059280:CDS |
GTTTATGGGAGGCTTTGAAT+TGG | 0.358332 | 7_2:-45223866 | Msa1059280:CDS |
TTTATGGGAGGCTTTGAATT+GGG | 0.363517 | 7_2:-45223865 | Msa1059280:CDS |
GAGGTACCATATACACTAAA+AGG | 0.388440 | 7_2:-45223351 | Msa1059280:CDS |
GACATTGGGAGAATGGCTTT+GGG | 0.438799 | 7_2:-45223304 | Msa1059280:CDS |
GTACATGAAGGTGAAGCTTT+GGG | 0.441380 | 7_2:-45223888 | Msa1059280:CDS |
AATAGAAGACATTGGGAGAA+TGG | 0.449043 | 7_2:-45223311 | Msa1059280:CDS |
TTGAATTGGGTTCTTAACTC+AGG | 0.457812 | 7_2:-45223852 | Msa1059280:intron |
TGTACATGAAGGTGAAGCTT+TGG | 0.468725 | 7_2:-45223889 | Msa1059280:CDS |
TGGAAGAAATAGAAGACATT+GGG | 0.468810 | 7_2:-45223318 | Msa1059280:CDS |
TAATCTTAAGGTGGTGGTGG+AGG | 0.482379 | 7_2:-45223370 | Msa1059280:intron |
CATAACTGGCTTGTTCTCGT+TGG | 0.482615 | 7_2:+45224499 | None:intergenic |
CACTAAAAGGAAGGAGCAAG+TGG | 0.538696 | 7_2:-45223338 | Msa1059280:CDS |
GTGGAAGAAATAGAAGACAT+TGG | 0.540645 | 7_2:-45223319 | Msa1059280:CDS |
TACCATATACACTAAAAGGA+AGG | 0.591287 | 7_2:-45223347 | Msa1059280:CDS |
TGAAGCTTTGGGTTTATGGG+AGG | 0.592021 | 7_2:-45223877 | Msa1059280:CDS |
ACTATGATTGCTGTACATGA+AGG | 0.651226 | 7_2:-45223900 | Msa1059280:CDS |
AATCGTATGAAATTATGGCG+TGG | 0.666977 | 7_2:-45225277 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAAATGAATATTATCTATGT+TGG | - | chr7_2:45223528-45223547 | Msa1059280:intron | 15.0% |
!!! | CTTTCTATTTTTTAATCTTA+AGG | - | chr7_2:45225166-45225185 | Msa1059280:intron | 15.0% |
!! | AAAATGAATATTATCTATGT+TGG | - | chr7_2:45223528-45223547 | Msa1059280:intron | 15.0% |
!!! | CTTTCTATTTTTTAATCTTA+AGG | - | chr7_2:45225166-45225185 | Msa1059280:intron | 15.0% |
!!! | TGATATTTTTCTTGAAGTTA+TGG | - | chr7_2:45223296-45223315 | Msa1059280:CDS | 20.0% |
!!! | CCATATTTTGAAAACAATAA+AGG | + | chr7_2:45223331-45223350 | None:intergenic | 20.0% |
!!! | CCTTTATTGTTTTCAAAATA+TGG | - | chr7_2:45223328-45223347 | Msa1059280:CDS | 20.0% |
!!! | AAAGTTGTAAACTTTTAATC+AGG | - | chr7_2:45223390-45223409 | Msa1059280:intron | 20.0% |
!!! | AAGTTGTAAACTTTTAATCA+GGG | - | chr7_2:45223391-45223410 | Msa1059280:intron | 20.0% |
!!! | ATTTTTGAGATTATGTTGTT+GGG | - | chr7_2:45223955-45223974 | Msa1059280:intron | 20.0% |
!!! | TTTTTCTGATATATATGTTG+TGG | - | chr7_2:45224165-45224184 | Msa1059280:intron | 20.0% |
!!! | TAATGGTTTGATTTTGATTA+TGG | - | chr7_2:45224209-45224228 | Msa1059280:intron | 20.0% |
!!! | CTTGAAATATTTTCATTACT+AGG | - | chr7_2:45224303-45224322 | Msa1059280:intron | 20.0% |
!! | GAAACATAATCATAAAGTAT+GGG | + | chr7_2:45224868-45224887 | None:intergenic | 20.0% |
!! | AGAAACATAATCATAAAGTA+TGG | + | chr7_2:45224869-45224888 | None:intergenic | 20.0% |
!!! | TGTCGTTTATTTAAATAAAG+TGG | + | chr7_2:45224900-45224919 | None:intergenic | 20.0% |
!!! | TCTATTTTTTAATCTTAAGG+TGG | - | chr7_2:45225169-45225188 | Msa1059280:intron | 20.0% |
!!! | TGATATTTTTCTTGAAGTTA+TGG | - | chr7_2:45223296-45223315 | Msa1059280:CDS | 20.0% |
!!! | CCATATTTTGAAAACAATAA+AGG | + | chr7_2:45223331-45223350 | None:intergenic | 20.0% |
!!! | CCTTTATTGTTTTCAAAATA+TGG | - | chr7_2:45223328-45223347 | Msa1059280:CDS | 20.0% |
!!! | AAAGTTGTAAACTTTTAATC+AGG | - | chr7_2:45223390-45223409 | Msa1059280:intron | 20.0% |
!!! | AAGTTGTAAACTTTTAATCA+GGG | - | chr7_2:45223391-45223410 | Msa1059280:intron | 20.0% |
!!! | ATTTTTGAGATTATGTTGTT+GGG | - | chr7_2:45223955-45223974 | Msa1059280:intron | 20.0% |
!!! | TTTTTCTGATATATATGTTG+TGG | - | chr7_2:45224165-45224184 | Msa1059280:intron | 20.0% |
!!! | TAATGGTTTGATTTTGATTA+TGG | - | chr7_2:45224209-45224228 | Msa1059280:intron | 20.0% |
!!! | CTTGAAATATTTTCATTACT+AGG | - | chr7_2:45224303-45224322 | Msa1059280:intron | 20.0% |
!! | GAAACATAATCATAAAGTAT+GGG | + | chr7_2:45224868-45224887 | None:intergenic | 20.0% |
!! | AGAAACATAATCATAAAGTA+TGG | + | chr7_2:45224869-45224888 | None:intergenic | 20.0% |
!!! | TGTCGTTTATTTAAATAAAG+TGG | + | chr7_2:45224900-45224919 | None:intergenic | 20.0% |
!!! | TCTATTTTTTAATCTTAAGG+TGG | - | chr7_2:45225169-45225188 | Msa1059280:intron | 20.0% |
!! | TTGTTTTCAAAATATGGTGT+TGG | - | chr7_2:45223334-45223353 | Msa1059280:CDS | 25.0% |
!! | TGTTTTCAAAATATGGTGTT+GGG | - | chr7_2:45223335-45223354 | Msa1059280:CDS | 25.0% |
! | AGTTTACAACTTTCTTACAA+TGG | + | chr7_2:45223383-45223402 | None:intergenic | 25.0% |
! | ACTATATATGCATCTTAACA+TGG | + | chr7_2:45223447-45223466 | None:intergenic | 25.0% |
!!! | TATTATCTATGTTGGTAATG+TGG | - | chr7_2:45223536-45223555 | Msa1059280:intron | 25.0% |
!!! | ATTATCTATGTTGGTAATGT+GGG | - | chr7_2:45223537-45223556 | Msa1059280:intron | 25.0% |
!! | CATAACAGATACAAATGTTT+TGG | + | chr7_2:45223673-45223692 | None:intergenic | 25.0% |
! | CAAAACATTTGTATCTGTTA+TGG | - | chr7_2:45223671-45223690 | Msa1059280:intron | 25.0% |
!!! | CATATCATTTTGATATTACC+AGG | - | chr7_2:45223730-45223749 | Msa1059280:intron | 25.0% |
! | TTTGATATTACCAGGATAAT+TGG | - | chr7_2:45223738-45223757 | Msa1059280:intron | 25.0% |
! | TTGATATTACCAGGATAATT+GGG | - | chr7_2:45223739-45223758 | Msa1059280:intron | 25.0% |
! | TCAAAAAGAGCAAAACAATT+CGG | + | chr7_2:45223806-45223825 | None:intergenic | 25.0% |
!!! | TTTTCTGTTATTTTCCTTGT+TGG | - | chr7_2:45223865-45223884 | Msa1059280:CDS | 25.0% |
! | CAAATTATCTATCATGCTAA+GGG | + | chr7_2:45223894-45223913 | None:intergenic | 25.0% |
!!! | GATTTTTGAGATTATGTTGT+TGG | - | chr7_2:45223954-45223973 | Msa1059280:intron | 25.0% |
!!! | AAACTATTGTTTTGTATGTC+AGG | - | chr7_2:45223986-45224005 | Msa1059280:intron | 25.0% |
! | TAACATGCTATTCATTCTAA+TGG | + | chr7_2:45224098-45224117 | None:intergenic | 25.0% |
!!! | CATGTTAGTTTGTTATTGTA+CGG | - | chr7_2:45224111-45224130 | Msa1059280:intron | 25.0% |
!!! | ATGTTAGTTTGTTATTGTAC+GGG | - | chr7_2:45224112-45224131 | Msa1059280:intron | 25.0% |
! | AATCAAACCATTACAATAAC+AGG | + | chr7_2:45224202-45224221 | None:intergenic | 25.0% |
!! | TTTCAAGCAAAGCTTTTAAA+CGG | + | chr7_2:45224290-45224309 | None:intergenic | 25.0% |
!! | TTTTTGTTACATAACAAGTG+AGG | - | chr7_2:45224334-45224353 | Msa1059280:intron | 25.0% |
! | TTGTCACAAAATAATAATCG+TGG | - | chr7_2:45224931-45224950 | Msa1059280:intron | 25.0% |
! | ATAATCAAAAAATCTTTCCC+AGG | - | chr7_2:45225037-45225056 | Msa1059280:intron | 25.0% |
! | TAAGAAAACACAACTTAGTA+AGG | - | chr7_2:45225135-45225154 | Msa1059280:intron | 25.0% |
!!! | ATTTTTTAATCTTAAGGTGG+TGG | - | chr7_2:45225172-45225191 | Msa1059280:intron | 25.0% |
!! | TTGTTTTCAAAATATGGTGT+TGG | - | chr7_2:45223334-45223353 | Msa1059280:CDS | 25.0% |
!! | TGTTTTCAAAATATGGTGTT+GGG | - | chr7_2:45223335-45223354 | Msa1059280:CDS | 25.0% |
! | AGTTTACAACTTTCTTACAA+TGG | + | chr7_2:45223383-45223402 | None:intergenic | 25.0% |
! | ACTATATATGCATCTTAACA+TGG | + | chr7_2:45223447-45223466 | None:intergenic | 25.0% |
!!! | TATTATCTATGTTGGTAATG+TGG | - | chr7_2:45223536-45223555 | Msa1059280:intron | 25.0% |
!!! | ATTATCTATGTTGGTAATGT+GGG | - | chr7_2:45223537-45223556 | Msa1059280:intron | 25.0% |
!! | CATAACAGATACAAATGTTT+TGG | + | chr7_2:45223673-45223692 | None:intergenic | 25.0% |
! | CAAAACATTTGTATCTGTTA+TGG | - | chr7_2:45223671-45223690 | Msa1059280:intron | 25.0% |
!!! | CATATCATTTTGATATTACC+AGG | - | chr7_2:45223730-45223749 | Msa1059280:intron | 25.0% |
! | TTTGATATTACCAGGATAAT+TGG | - | chr7_2:45223738-45223757 | Msa1059280:intron | 25.0% |
! | TTGATATTACCAGGATAATT+GGG | - | chr7_2:45223739-45223758 | Msa1059280:intron | 25.0% |
! | TCAAAAAGAGCAAAACAATT+CGG | + | chr7_2:45223806-45223825 | None:intergenic | 25.0% |
!!! | TTTTCTGTTATTTTCCTTGT+TGG | - | chr7_2:45223865-45223884 | Msa1059280:CDS | 25.0% |
! | CAAATTATCTATCATGCTAA+GGG | + | chr7_2:45223894-45223913 | None:intergenic | 25.0% |
!!! | GATTTTTGAGATTATGTTGT+TGG | - | chr7_2:45223954-45223973 | Msa1059280:intron | 25.0% |
!!! | AAACTATTGTTTTGTATGTC+AGG | - | chr7_2:45223986-45224005 | Msa1059280:intron | 25.0% |
! | TAACATGCTATTCATTCTAA+TGG | + | chr7_2:45224098-45224117 | None:intergenic | 25.0% |
!!! | CATGTTAGTTTGTTATTGTA+CGG | - | chr7_2:45224111-45224130 | Msa1059280:intron | 25.0% |
!!! | ATGTTAGTTTGTTATTGTAC+GGG | - | chr7_2:45224112-45224131 | Msa1059280:intron | 25.0% |
! | AATCAAACCATTACAATAAC+AGG | + | chr7_2:45224202-45224221 | None:intergenic | 25.0% |
!! | TTTCAAGCAAAGCTTTTAAA+CGG | + | chr7_2:45224290-45224309 | None:intergenic | 25.0% |
!! | TTTTTGTTACATAACAAGTG+AGG | - | chr7_2:45224334-45224353 | Msa1059280:intron | 25.0% |
! | TTGTCACAAAATAATAATCG+TGG | - | chr7_2:45224931-45224950 | Msa1059280:intron | 25.0% |
! | ATAATCAAAAAATCTTTCCC+AGG | - | chr7_2:45225037-45225056 | Msa1059280:intron | 25.0% |
! | TAAGAAAACACAACTTAGTA+AGG | - | chr7_2:45225135-45225154 | Msa1059280:intron | 25.0% |
!!! | ATTTTTTAATCTTAAGGTGG+TGG | - | chr7_2:45225172-45225191 | Msa1059280:intron | 25.0% |
TTATGGTTGTTAGTGGTTAT+TGG | - | chr7_2:45223688-45223707 | Msa1059280:intron | 30.0% | |
! | GATATGCAAACATGCAATTT+TGG | + | chr7_2:45223716-45223735 | None:intergenic | 30.0% |
TGATATTACCAGGATAATTG+GGG | - | chr7_2:45223740-45223759 | Msa1059280:intron | 30.0% | |
CCAAATTATCTATCATGCTA+AGG | + | chr7_2:45223895-45223914 | None:intergenic | 30.0% | |
CCTTAGCATGATAGATAATT+TGG | - | chr7_2:45223892-45223911 | Msa1059280:CDS | 30.0% | |
TATATGTTGTGGTGACTTTA+AGG | - | chr7_2:45224176-45224195 | Msa1059280:intron | 30.0% | |
! | TTTAAGGCCTGTTATTGTAA+TGG | - | chr7_2:45224192-45224211 | Msa1059280:intron | 30.0% |
! | TTCAAGCAAAGCTTTTAAAC+GGG | + | chr7_2:45224289-45224308 | None:intergenic | 30.0% |
GCTTATTTGGTTACATTAAC+TGG | - | chr7_2:45224371-45224390 | Msa1059280:intron | 30.0% | |
AACCTACCTAACATTAATCT+GGG | - | chr7_2:45224477-45224496 | Msa1059280:intron | 30.0% | |
AGTGTGCTTCCTAATAAAAT+GGG | + | chr7_2:45224505-45224524 | None:intergenic | 30.0% | |
TAGTGTGCTTCCTAATAAAA+TGG | + | chr7_2:45224506-45224525 | None:intergenic | 30.0% | |
ATCTCATAATAACAACTCTG+AGG | - | chr7_2:45224809-45224828 | Msa1059280:intron | 30.0% | |
ACAAAATAATAATCGTGGAG+TGG | - | chr7_2:45224936-45224955 | Msa1059280:intron | 30.0% | |
AAACAGGTGTCAAAAATAGA+GGG | + | chr7_2:45224997-45225016 | None:intergenic | 30.0% | |
AAAACAGGTGTCAAAAATAG+AGG | + | chr7_2:45224998-45225017 | None:intergenic | 30.0% | |
AAAAGCCTCAATCACATTTA+AGG | - | chr7_2:45225088-45225107 | Msa1059280:intron | 30.0% | |
CATTACCTTAAATGTGATTG+AGG | + | chr7_2:45225096-45225115 | None:intergenic | 30.0% | |
TACCATATACACTAAAAGGA+AGG | - | chr7_2:45225201-45225220 | Msa1059280:intron | 30.0% | |
TGGAAGAAATAGAAGACATT+GGG | - | chr7_2:45225230-45225249 | Msa1059280:CDS | 30.0% | |
TTATGGTTGTTAGTGGTTAT+TGG | - | chr7_2:45223688-45223707 | Msa1059280:intron | 30.0% | |
! | GATATGCAAACATGCAATTT+TGG | + | chr7_2:45223716-45223735 | None:intergenic | 30.0% |
TGATATTACCAGGATAATTG+GGG | - | chr7_2:45223740-45223759 | Msa1059280:intron | 30.0% | |
CCAAATTATCTATCATGCTA+AGG | + | chr7_2:45223895-45223914 | None:intergenic | 30.0% | |
CCTTAGCATGATAGATAATT+TGG | - | chr7_2:45223892-45223911 | Msa1059280:CDS | 30.0% | |
TATATGTTGTGGTGACTTTA+AGG | - | chr7_2:45224176-45224195 | Msa1059280:intron | 30.0% | |
! | TTTAAGGCCTGTTATTGTAA+TGG | - | chr7_2:45224192-45224211 | Msa1059280:intron | 30.0% |
! | TTCAAGCAAAGCTTTTAAAC+GGG | + | chr7_2:45224289-45224308 | None:intergenic | 30.0% |
GCTTATTTGGTTACATTAAC+TGG | - | chr7_2:45224371-45224390 | Msa1059280:intron | 30.0% | |
AACCTACCTAACATTAATCT+GGG | - | chr7_2:45224477-45224496 | Msa1059280:intron | 30.0% | |
AGTGTGCTTCCTAATAAAAT+GGG | + | chr7_2:45224505-45224524 | None:intergenic | 30.0% | |
TAGTGTGCTTCCTAATAAAA+TGG | + | chr7_2:45224506-45224525 | None:intergenic | 30.0% | |
ATCTCATAATAACAACTCTG+AGG | - | chr7_2:45224809-45224828 | Msa1059280:intron | 30.0% | |
ACAAAATAATAATCGTGGAG+TGG | - | chr7_2:45224936-45224955 | Msa1059280:intron | 30.0% | |
AAACAGGTGTCAAAAATAGA+GGG | + | chr7_2:45224997-45225016 | None:intergenic | 30.0% | |
AAAACAGGTGTCAAAAATAG+AGG | + | chr7_2:45224998-45225017 | None:intergenic | 30.0% | |
AAAAGCCTCAATCACATTTA+AGG | - | chr7_2:45225088-45225107 | Msa1059280:intron | 30.0% | |
CATTACCTTAAATGTGATTG+AGG | + | chr7_2:45225096-45225115 | None:intergenic | 30.0% | |
TACCATATACACTAAAAGGA+AGG | - | chr7_2:45225201-45225220 | Msa1059280:intron | 30.0% | |
TGGAAGAAATAGAAGACATT+GGG | - | chr7_2:45225230-45225249 | Msa1059280:CDS | 30.0% | |
ATACAGACACATACACAAAC+AGG | + | chr7_2:45223481-45223500 | None:intergenic | 35.0% | |
TGTTTGTGTATGTGTCTGTA+TGG | - | chr7_2:45223480-45223499 | Msa1059280:intron | 35.0% | |
GTTTGTGTATGTGTCTGTAT+GGG | - | chr7_2:45223481-45223500 | Msa1059280:intron | 35.0% | |
GTATCTGTTATGGTTGTTAG+TGG | - | chr7_2:45223681-45223700 | Msa1059280:intron | 35.0% | |
ACAAAAAACCCCAATTATCC+TGG | + | chr7_2:45223751-45223770 | None:intergenic | 35.0% | |
TTTGTATGTCAGGAAAAACG+AGG | - | chr7_2:45223996-45224015 | Msa1059280:intron | 35.0% | |
!! | GCTTTGAATCTCTGTTCTTT+TGG | + | chr7_2:45224030-45224049 | None:intergenic | 35.0% |
TAACTGGTTAACAGTTTCAG+TGG | - | chr7_2:45224387-45224406 | Msa1059280:intron | 35.0% | |
GAACCTACCTAACATTAATC+TGG | - | chr7_2:45224476-45224495 | Msa1059280:intron | 35.0% | |
ACTATGATTGCTGTACATGA+AGG | - | chr7_2:45224648-45224667 | Msa1059280:intron | 35.0% | |
!! | TTTATGGGAGGCTTTGAATT+GGG | - | chr7_2:45224683-45224702 | Msa1059280:intron | 35.0% |
TTGAATTGGGTTCTTAACTC+AGG | - | chr7_2:45224696-45224715 | Msa1059280:intron | 35.0% | |
ATATGCCTACAGACTTAGAA+TGG | + | chr7_2:45224772-45224791 | None:intergenic | 35.0% | |
AAATAATAATCGTGGAGTGG+AGG | - | chr7_2:45224939-45224958 | Msa1059280:intron | 35.0% | |
AACAGGTGTCAAAAATAGAG+GGG | + | chr7_2:45224996-45225015 | None:intergenic | 35.0% | |
!! | TTTTAATCTTAAGGTGGTGG+TGG | - | chr7_2:45225175-45225194 | Msa1059280:intron | 35.0% |
! | GAGGTACCATATACACTAAA+AGG | - | chr7_2:45225197-45225216 | Msa1059280:intron | 35.0% |
! | CTCCTTCCTTTTAGTGTATA+TGG | + | chr7_2:45225206-45225225 | None:intergenic | 35.0% |
GTGGAAGAAATAGAAGACAT+TGG | - | chr7_2:45225229-45225248 | Msa1059280:CDS | 35.0% | |
AATAGAAGACATTGGGAGAA+TGG | - | chr7_2:45225237-45225256 | Msa1059280:CDS | 35.0% | |
ATACAGACACATACACAAAC+AGG | + | chr7_2:45223481-45223500 | None:intergenic | 35.0% | |
TGTTTGTGTATGTGTCTGTA+TGG | - | chr7_2:45223480-45223499 | Msa1059280:intron | 35.0% | |
GTTTGTGTATGTGTCTGTAT+GGG | - | chr7_2:45223481-45223500 | Msa1059280:intron | 35.0% | |
GTATCTGTTATGGTTGTTAG+TGG | - | chr7_2:45223681-45223700 | Msa1059280:intron | 35.0% | |
ACAAAAAACCCCAATTATCC+TGG | + | chr7_2:45223751-45223770 | None:intergenic | 35.0% | |
TTTGTATGTCAGGAAAAACG+AGG | - | chr7_2:45223996-45224015 | Msa1059280:intron | 35.0% | |
!! | GCTTTGAATCTCTGTTCTTT+TGG | + | chr7_2:45224030-45224049 | None:intergenic | 35.0% |
TAACTGGTTAACAGTTTCAG+TGG | - | chr7_2:45224387-45224406 | Msa1059280:intron | 35.0% | |
GAACCTACCTAACATTAATC+TGG | - | chr7_2:45224476-45224495 | Msa1059280:intron | 35.0% | |
ACTATGATTGCTGTACATGA+AGG | - | chr7_2:45224648-45224667 | Msa1059280:intron | 35.0% | |
!! | TTTATGGGAGGCTTTGAATT+GGG | - | chr7_2:45224683-45224702 | Msa1059280:intron | 35.0% |
TTGAATTGGGTTCTTAACTC+AGG | - | chr7_2:45224696-45224715 | Msa1059280:intron | 35.0% | |
ATATGCCTACAGACTTAGAA+TGG | + | chr7_2:45224772-45224791 | None:intergenic | 35.0% | |
AAATAATAATCGTGGAGTGG+AGG | - | chr7_2:45224939-45224958 | Msa1059280:intron | 35.0% | |
AACAGGTGTCAAAAATAGAG+GGG | + | chr7_2:45224996-45225015 | None:intergenic | 35.0% | |
!! | TTTTAATCTTAAGGTGGTGG+TGG | - | chr7_2:45225175-45225194 | Msa1059280:intron | 35.0% |
! | GAGGTACCATATACACTAAA+AGG | - | chr7_2:45225197-45225216 | Msa1059280:intron | 35.0% |
! | CTCCTTCCTTTTAGTGTATA+TGG | + | chr7_2:45225206-45225225 | None:intergenic | 35.0% |
GTGGAAGAAATAGAAGACAT+TGG | - | chr7_2:45225229-45225248 | Msa1059280:CDS | 35.0% | |
AATAGAAGACATTGGGAGAA+TGG | - | chr7_2:45225237-45225256 | Msa1059280:CDS | 35.0% | |
!! | GGTGTTGGGTATTGAAGTTA+TGG | - | chr7_2:45223349-45223368 | Msa1059280:CDS | 40.0% |
GTGTATCACTCTGTCATAAC+TGG | + | chr7_2:45224066-45224085 | None:intergenic | 40.0% | |
! | ATTGTACGGGTGCTATGAAA+TGG | - | chr7_2:45224125-45224144 | Msa1059280:intron | 40.0% |
AGTCGATATATGTTCAACGC+AGG | + | chr7_2:45224244-45224263 | None:intergenic | 40.0% | |
ATAACAAGTGAGGATGCGTT+TGG | - | chr7_2:45224344-45224363 | Msa1059280:intron | 40.0% | |
TGCGTTTGGATGAGCTTATT+TGG | - | chr7_2:45224358-45224377 | Msa1059280:intron | 40.0% | |
AGATGTAGAAGCAACTAGAG+TGG | - | chr7_2:45224446-45224465 | Msa1059280:intron | 40.0% | |
AGCCCAGATTAATGTTAGGT+AGG | + | chr7_2:45224482-45224501 | None:intergenic | 40.0% | |
! | ATCTGGGCTCCCATTTTATT+AGG | - | chr7_2:45224493-45224512 | Msa1059280:intron | 40.0% |
TCGTAGCTCTCGAATAAAAC+AGG | + | chr7_2:45224547-45224566 | None:intergenic | 40.0% | |
TGCGCGATAATAAGGGTAAA+GGG | - | chr7_2:45224591-45224610 | Msa1059280:intron | 40.0% | |
!! | TTGTTTCTGCTTGCACAGAT+TGG | - | chr7_2:45224619-45224638 | Msa1059280:intron | 40.0% |
TGTACATGAAGGTGAAGCTT+TGG | - | chr7_2:45224659-45224678 | Msa1059280:intron | 40.0% | |
GTACATGAAGGTGAAGCTTT+GGG | - | chr7_2:45224660-45224679 | Msa1059280:intron | 40.0% | |
!! | AAGGTGAAGCTTTGGGTTTA+TGG | - | chr7_2:45224667-45224686 | Msa1059280:intron | 40.0% |
!! | AGGTGAAGCTTTGGGTTTAT+GGG | - | chr7_2:45224668-45224687 | Msa1059280:intron | 40.0% |
!! | GTTTATGGGAGGCTTTGAAT+TGG | - | chr7_2:45224682-45224701 | Msa1059280:intron | 40.0% |
!! | TAGAATGGATAGCATCGACT+AGG | + | chr7_2:45224757-45224776 | None:intergenic | 40.0% |
GCTATCCATTCTAAGTCTGT+AGG | - | chr7_2:45224764-45224783 | Msa1059280:intron | 40.0% | |
ACAGGTGTCAAAAATAGAGG+GGG | + | chr7_2:45224995-45225014 | None:intergenic | 40.0% | |
!! | GGTGTTGGGTATTGAAGTTA+TGG | - | chr7_2:45223349-45223368 | Msa1059280:CDS | 40.0% |
GTGTATCACTCTGTCATAAC+TGG | + | chr7_2:45224066-45224085 | None:intergenic | 40.0% | |
! | ATTGTACGGGTGCTATGAAA+TGG | - | chr7_2:45224125-45224144 | Msa1059280:intron | 40.0% |
AGTCGATATATGTTCAACGC+AGG | + | chr7_2:45224244-45224263 | None:intergenic | 40.0% | |
ATAACAAGTGAGGATGCGTT+TGG | - | chr7_2:45224344-45224363 | Msa1059280:intron | 40.0% | |
TGCGTTTGGATGAGCTTATT+TGG | - | chr7_2:45224358-45224377 | Msa1059280:intron | 40.0% | |
AGATGTAGAAGCAACTAGAG+TGG | - | chr7_2:45224446-45224465 | Msa1059280:intron | 40.0% | |
AGCCCAGATTAATGTTAGGT+AGG | + | chr7_2:45224482-45224501 | None:intergenic | 40.0% | |
! | ATCTGGGCTCCCATTTTATT+AGG | - | chr7_2:45224493-45224512 | Msa1059280:intron | 40.0% |
TCGTAGCTCTCGAATAAAAC+AGG | + | chr7_2:45224547-45224566 | None:intergenic | 40.0% | |
TGCGCGATAATAAGGGTAAA+GGG | - | chr7_2:45224591-45224610 | Msa1059280:intron | 40.0% | |
!! | TTGTTTCTGCTTGCACAGAT+TGG | - | chr7_2:45224619-45224638 | Msa1059280:intron | 40.0% |
TGTACATGAAGGTGAAGCTT+TGG | - | chr7_2:45224659-45224678 | Msa1059280:intron | 40.0% | |
GTACATGAAGGTGAAGCTTT+GGG | - | chr7_2:45224660-45224679 | Msa1059280:intron | 40.0% | |
!! | AAGGTGAAGCTTTGGGTTTA+TGG | - | chr7_2:45224667-45224686 | Msa1059280:intron | 40.0% |
!! | AGGTGAAGCTTTGGGTTTAT+GGG | - | chr7_2:45224668-45224687 | Msa1059280:intron | 40.0% |
!! | GTTTATGGGAGGCTTTGAAT+TGG | - | chr7_2:45224682-45224701 | Msa1059280:intron | 40.0% |
!! | TAGAATGGATAGCATCGACT+AGG | + | chr7_2:45224757-45224776 | None:intergenic | 40.0% |
GCTATCCATTCTAAGTCTGT+AGG | - | chr7_2:45224764-45224783 | Msa1059280:intron | 40.0% | |
ACAGGTGTCAAAAATAGAGG+GGG | + | chr7_2:45224995-45225014 | None:intergenic | 40.0% | |
GTCTGTATGGGTCACACTAT+TGG | - | chr7_2:45223493-45223512 | Msa1059280:intron | 45.0% | |
AAACCTTCACTCCTCCATGA+GGG | + | chr7_2:45223603-45223622 | None:intergenic | 45.0% | |
TAAACCTTCACTCCTCCATG+AGG | + | chr7_2:45223604-45223623 | None:intergenic | 45.0% | |
CATGCTAAGGGAAACCAACA+AGG | + | chr7_2:45223882-45223901 | None:intergenic | 45.0% | |
!! | CATAACTGGCTTGTTCTCGT+TGG | + | chr7_2:45224052-45224071 | None:intergenic | 45.0% |
CTGGTTAACAGTTTCAGTGG+TGG | - | chr7_2:45224390-45224409 | Msa1059280:intron | 45.0% | |
TGGGAGCCCAGATTAATGTT+AGG | + | chr7_2:45224486-45224505 | None:intergenic | 45.0% | |
AAACTGCCTGCGCGATAATA+AGG | - | chr7_2:45224583-45224602 | Msa1059280:intron | 45.0% | |
AACTGCCTGCGCGATAATAA+GGG | - | chr7_2:45224584-45224603 | Msa1059280:intron | 45.0% | |
CTTTACCCTTATTATCGCGC+AGG | + | chr7_2:45224592-45224611 | None:intergenic | 45.0% | |
CTGCGCGATAATAAGGGTAA+AGG | - | chr7_2:45224590-45224609 | Msa1059280:intron | 45.0% | |
!! | TGAAGCTTTGGGTTTATGGG+AGG | - | chr7_2:45224671-45224690 | Msa1059280:intron | 45.0% |
TAATAATCGTGGAGTGGAGG+CGG | - | chr7_2:45224942-45224961 | Msa1059280:intron | 45.0% | |
AGGTGTCAAAAATAGAGGGG+GGG | + | chr7_2:45224993-45225012 | None:intergenic | 45.0% | |
CAGGTGTCAAAAATAGAGGG+GGG | + | chr7_2:45224994-45225013 | None:intergenic | 45.0% | |
GCGCAAGATTGTGCAAAAAC+AGG | + | chr7_2:45225013-45225032 | None:intergenic | 45.0% | |
CTCATCTTTCTCGTCATCCT+GGG | + | chr7_2:45225057-45225076 | None:intergenic | 45.0% | |
ACTCATCTTTCTCGTCATCC+TGG | + | chr7_2:45225058-45225077 | None:intergenic | 45.0% | |
!! | TAATCTTAAGGTGGTGGTGG+AGG | - | chr7_2:45225178-45225197 | Msa1059280:intron | 45.0% |
CACTAAAAGGAAGGAGCAAG+TGG | - | chr7_2:45225210-45225229 | Msa1059280:intron | 45.0% | |
AGACATTGGGAGAATGGCTT+TGG | - | chr7_2:45225243-45225262 | Msa1059280:CDS | 45.0% | |
GACATTGGGAGAATGGCTTT+GGG | - | chr7_2:45225244-45225263 | Msa1059280:CDS | 45.0% | |
GTCTGTATGGGTCACACTAT+TGG | - | chr7_2:45223493-45223512 | Msa1059280:intron | 45.0% | |
AAACCTTCACTCCTCCATGA+GGG | + | chr7_2:45223603-45223622 | None:intergenic | 45.0% | |
TAAACCTTCACTCCTCCATG+AGG | + | chr7_2:45223604-45223623 | None:intergenic | 45.0% | |
CATGCTAAGGGAAACCAACA+AGG | + | chr7_2:45223882-45223901 | None:intergenic | 45.0% | |
!! | CATAACTGGCTTGTTCTCGT+TGG | + | chr7_2:45224052-45224071 | None:intergenic | 45.0% |
CTGGTTAACAGTTTCAGTGG+TGG | - | chr7_2:45224390-45224409 | Msa1059280:intron | 45.0% | |
TGGGAGCCCAGATTAATGTT+AGG | + | chr7_2:45224486-45224505 | None:intergenic | 45.0% | |
AAACTGCCTGCGCGATAATA+AGG | - | chr7_2:45224583-45224602 | Msa1059280:intron | 45.0% | |
AACTGCCTGCGCGATAATAA+GGG | - | chr7_2:45224584-45224603 | Msa1059280:intron | 45.0% | |
CTTTACCCTTATTATCGCGC+AGG | + | chr7_2:45224592-45224611 | None:intergenic | 45.0% | |
CTGCGCGATAATAAGGGTAA+AGG | - | chr7_2:45224590-45224609 | Msa1059280:intron | 45.0% | |
!! | TGAAGCTTTGGGTTTATGGG+AGG | - | chr7_2:45224671-45224690 | Msa1059280:intron | 45.0% |
TAATAATCGTGGAGTGGAGG+CGG | - | chr7_2:45224942-45224961 | Msa1059280:intron | 45.0% | |
AGGTGTCAAAAATAGAGGGG+GGG | + | chr7_2:45224993-45225012 | None:intergenic | 45.0% | |
CAGGTGTCAAAAATAGAGGG+GGG | + | chr7_2:45224994-45225013 | None:intergenic | 45.0% | |
GCGCAAGATTGTGCAAAAAC+AGG | + | chr7_2:45225013-45225032 | None:intergenic | 45.0% | |
CTCATCTTTCTCGTCATCCT+GGG | + | chr7_2:45225057-45225076 | None:intergenic | 45.0% | |
ACTCATCTTTCTCGTCATCC+TGG | + | chr7_2:45225058-45225077 | None:intergenic | 45.0% | |
!! | TAATCTTAAGGTGGTGGTGG+AGG | - | chr7_2:45225178-45225197 | Msa1059280:intron | 45.0% |
CACTAAAAGGAAGGAGCAAG+TGG | - | chr7_2:45225210-45225229 | Msa1059280:intron | 45.0% | |
AGACATTGGGAGAATGGCTT+TGG | - | chr7_2:45225243-45225262 | Msa1059280:CDS | 45.0% | |
GACATTGGGAGAATGGCTTT+GGG | - | chr7_2:45225244-45225263 | Msa1059280:CDS | 45.0% | |
AAGAAATGCGTAGCCCCTCA+TGG | - | chr7_2:45223586-45223605 | Msa1059280:intron | 50.0% | |
AACCTTCACTCCTCCATGAG+GGG | + | chr7_2:45223602-45223621 | None:intergenic | 50.0% | |
CAGGCAGTTTCTGTAGCTAG+TGG | + | chr7_2:45224573-45224592 | None:intergenic | 50.0% | |
AATAATCGTGGAGTGGAGGC+GGG | - | chr7_2:45224943-45224962 | Msa1059280:intron | 50.0% | |
TGTCAAAAATAGAGGGGGGG+GGG | + | chr7_2:45224990-45225009 | None:intergenic | 50.0% | |
GTGTCAAAAATAGAGGGGGG+GGG | + | chr7_2:45224991-45225010 | None:intergenic | 50.0% | |
GGTGTCAAAAATAGAGGGGG+GGG | + | chr7_2:45224992-45225011 | None:intergenic | 50.0% | |
AAGAAATGCGTAGCCCCTCA+TGG | - | chr7_2:45223586-45223605 | Msa1059280:intron | 50.0% | |
AACCTTCACTCCTCCATGAG+GGG | + | chr7_2:45223602-45223621 | None:intergenic | 50.0% | |
CAGGCAGTTTCTGTAGCTAG+TGG | + | chr7_2:45224573-45224592 | None:intergenic | 50.0% | |
AATAATCGTGGAGTGGAGGC+GGG | - | chr7_2:45224943-45224962 | Msa1059280:intron | 50.0% | |
TGTCAAAAATAGAGGGGGGG+GGG | + | chr7_2:45224990-45225009 | None:intergenic | 50.0% | |
GTGTCAAAAATAGAGGGGGG+GGG | + | chr7_2:45224991-45225010 | None:intergenic | 50.0% | |
GGTGTCAAAAATAGAGGGGG+GGG | + | chr7_2:45224992-45225011 | None:intergenic | 50.0% | |
AAATGCGTAGCCCCTCATGG+AGG | - | chr7_2:45223589-45223608 | Msa1059280:intron | 55.0% | |
ATAATCGTGGAGTGGAGGCG+GGG | - | chr7_2:45224944-45224963 | Msa1059280:intron | 55.0% | |
TCAAAAATAGAGGGGGGGGG+GGG | + | chr7_2:45224988-45225007 | None:intergenic | 55.0% | |
GTCAAAAATAGAGGGGGGGG+GGG | + | chr7_2:45224989-45225008 | None:intergenic | 55.0% | |
AAATGCGTAGCCCCTCATGG+AGG | - | chr7_2:45223589-45223608 | Msa1059280:intron | 55.0% | |
ATAATCGTGGAGTGGAGGCG+GGG | - | chr7_2:45224944-45224963 | Msa1059280:intron | 55.0% | |
TCAAAAATAGAGGGGGGGGG+GGG | + | chr7_2:45224988-45225007 | None:intergenic | 55.0% | |
GTCAAAAATAGAGGGGGGGG+GGG | + | chr7_2:45224989-45225008 | None:intergenic | 55.0% | |
AGCCCCTCATGGAGGAGTGA+AGG | - | chr7_2:45223597-45223616 | Msa1059280:intron | 60.0% | |
TAATCGTGGAGTGGAGGCGG+GGG | - | chr7_2:45224945-45224964 | Msa1059280:intron | 60.0% | |
AAAAATAGAGGGGGGGGGGG+GGG | + | chr7_2:45224986-45225005 | None:intergenic | 60.0% | |
CAAAAATAGAGGGGGGGGGG+GGG | + | chr7_2:45224987-45225006 | None:intergenic | 60.0% | |
AGCCCCTCATGGAGGAGTGA+AGG | - | chr7_2:45223597-45223616 | Msa1059280:intron | 60.0% | |
TAATCGTGGAGTGGAGGCGG+GGG | - | chr7_2:45224945-45224964 | Msa1059280:intron | 60.0% | |
AAAAATAGAGGGGGGGGGGG+GGG | + | chr7_2:45224986-45225005 | None:intergenic | 60.0% | |
CAAAAATAGAGGGGGGGGGG+GGG | + | chr7_2:45224987-45225006 | None:intergenic | 60.0% | |
GTGGAGGCGGGGGAAGAAAC+TGG | - | chr7_2:45224955-45224974 | Msa1059280:intron | 65.0% | |
AAAATAGAGGGGGGGGGGGG+GGG | + | chr7_2:45224985-45225004 | None:intergenic | 65.0% | |
GTGGAGGCGGGGGAAGAAAC+TGG | - | chr7_2:45224955-45224974 | Msa1059280:intron | 65.0% | |
AAAATAGAGGGGGGGGGGGG+GGG | + | chr7_2:45224985-45225004 | None:intergenic | 65.0% | |
AAATAGAGGGGGGGGGGGGG+GGG | + | chr7_2:45224984-45225003 | None:intergenic | 70.0% | |
AAATAGAGGGGGGGGGGGGG+GGG | + | chr7_2:45224984-45225003 | None:intergenic | 70.0% | |
AATAGAGGGGGGGGGGGGGG+GGG | + | chr7_2:45224983-45225002 | None:intergenic | 75.0% | |
AATAGAGGGGGGGGGGGGGG+GGG | + | chr7_2:45224983-45225002 | None:intergenic | 75.0% | |
! | ATAGAGGGGGGGGGGGGGGG+GGG | + | chr7_2:45224982-45225001 | None:intergenic | 80.0% |
! | ATAGAGGGGGGGGGGGGGGG+GGG | + | chr7_2:45224982-45225001 | None:intergenic | 80.0% |
! | TAGAGGGGGGGGGGGGGGGG+GGG | + | chr7_2:45224981-45225000 | None:intergenic | 85.0% |
! | TAGAGGGGGGGGGGGGGGGG+GGG | + | chr7_2:45224981-45225000 | None:intergenic | 85.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr7_2 | gene | 45223285 | 45225285 | 45223285 | ID=Msa1059280;Name=Msa1059280 |
chr7_2 | mRNA | 45223285 | 45225285 | 45223285 | ID=Msa1059280-mRNA-1;Parent=Msa1059280;Name=Msa1059280-mRNA-1;_AED=0.84;_eAED=0.84;_QI=0|0|0|0.25|1|1|4|0|102 |
chr7_2 | exon | 45225214 | 45225285 | 45225214 | ID=Msa1059280-mRNA-1:exon:8225;Parent=Msa1059280-mRNA-1 |
chr7_2 | exon | 45224505 | 45224562 | 45224505 | ID=Msa1059280-mRNA-1:exon:8224;Parent=Msa1059280-mRNA-1 |
chr7_2 | exon | 45223853 | 45223933 | 45223853 | ID=Msa1059280-mRNA-1:exon:8223;Parent=Msa1059280-mRNA-1 |
chr7_2 | exon | 45223285 | 45223382 | 45223285 | ID=Msa1059280-mRNA-1:exon:8222;Parent=Msa1059280-mRNA-1 |
chr7_2 | CDS | 45225214 | 45225285 | 45225214 | ID=Msa1059280-mRNA-1:cds;Parent=Msa1059280-mRNA-1 |
chr7_2 | CDS | 45224505 | 45224562 | 45224505 | ID=Msa1059280-mRNA-1:cds;Parent=Msa1059280-mRNA-1 |
chr7_2 | CDS | 45223853 | 45223933 | 45223853 | ID=Msa1059280-mRNA-1:cds;Parent=Msa1059280-mRNA-1 |
chr7_2 | CDS | 45223285 | 45223382 | 45223285 | ID=Msa1059280-mRNA-1:cds;Parent=Msa1059280-mRNA-1 |
Gene Sequence |
Protein sequence |