AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1059280


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 21 sgRNAs with CRISPR-Local

Find 288 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCTTTGAATCTCTGTTCTTT+TGG 0.209306 7_2:+45224521 None:intergenic
AAGGTGAAGCTTTGGGTTTA+TGG 0.299187 7_2:-45223881 Msa1059280:CDS
AGGTGAAGCTTTGGGTTTAT+GGG 0.308249 7_2:-45223880 Msa1059280:CDS
AGACATTGGGAGAATGGCTT+TGG 0.338465 7_2:-45223305 Msa1059280:CDS
GTTTATGGGAGGCTTTGAAT+TGG 0.358332 7_2:-45223866 Msa1059280:CDS
TTTATGGGAGGCTTTGAATT+GGG 0.363517 7_2:-45223865 Msa1059280:CDS
GAGGTACCATATACACTAAA+AGG 0.388440 7_2:-45223351 Msa1059280:CDS
GACATTGGGAGAATGGCTTT+GGG 0.438799 7_2:-45223304 Msa1059280:CDS
GTACATGAAGGTGAAGCTTT+GGG 0.441380 7_2:-45223888 Msa1059280:CDS
AATAGAAGACATTGGGAGAA+TGG 0.449043 7_2:-45223311 Msa1059280:CDS
TTGAATTGGGTTCTTAACTC+AGG 0.457812 7_2:-45223852 Msa1059280:intron
TGTACATGAAGGTGAAGCTT+TGG 0.468725 7_2:-45223889 Msa1059280:CDS
TGGAAGAAATAGAAGACATT+GGG 0.468810 7_2:-45223318 Msa1059280:CDS
TAATCTTAAGGTGGTGGTGG+AGG 0.482379 7_2:-45223370 Msa1059280:intron
CATAACTGGCTTGTTCTCGT+TGG 0.482615 7_2:+45224499 None:intergenic
CACTAAAAGGAAGGAGCAAG+TGG 0.538696 7_2:-45223338 Msa1059280:CDS
GTGGAAGAAATAGAAGACAT+TGG 0.540645 7_2:-45223319 Msa1059280:CDS
TACCATATACACTAAAAGGA+AGG 0.591287 7_2:-45223347 Msa1059280:CDS
TGAAGCTTTGGGTTTATGGG+AGG 0.592021 7_2:-45223877 Msa1059280:CDS
ACTATGATTGCTGTACATGA+AGG 0.651226 7_2:-45223900 Msa1059280:CDS
AATCGTATGAAATTATGGCG+TGG 0.666977 7_2:-45225277 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATGAATATTATCTATGT+TGG - chr7_2:45223528-45223547 Msa1059280:intron 15.0%
!!! CTTTCTATTTTTTAATCTTA+AGG - chr7_2:45225166-45225185 Msa1059280:intron 15.0%
!! AAAATGAATATTATCTATGT+TGG - chr7_2:45223528-45223547 Msa1059280:intron 15.0%
!!! CTTTCTATTTTTTAATCTTA+AGG - chr7_2:45225166-45225185 Msa1059280:intron 15.0%
!!! TGATATTTTTCTTGAAGTTA+TGG - chr7_2:45223296-45223315 Msa1059280:CDS 20.0%
!!! CCATATTTTGAAAACAATAA+AGG + chr7_2:45223331-45223350 None:intergenic 20.0%
!!! CCTTTATTGTTTTCAAAATA+TGG - chr7_2:45223328-45223347 Msa1059280:CDS 20.0%
!!! AAAGTTGTAAACTTTTAATC+AGG - chr7_2:45223390-45223409 Msa1059280:intron 20.0%
!!! AAGTTGTAAACTTTTAATCA+GGG - chr7_2:45223391-45223410 Msa1059280:intron 20.0%
!!! ATTTTTGAGATTATGTTGTT+GGG - chr7_2:45223955-45223974 Msa1059280:intron 20.0%
!!! TTTTTCTGATATATATGTTG+TGG - chr7_2:45224165-45224184 Msa1059280:intron 20.0%
!!! TAATGGTTTGATTTTGATTA+TGG - chr7_2:45224209-45224228 Msa1059280:intron 20.0%
!!! CTTGAAATATTTTCATTACT+AGG - chr7_2:45224303-45224322 Msa1059280:intron 20.0%
!! GAAACATAATCATAAAGTAT+GGG + chr7_2:45224868-45224887 None:intergenic 20.0%
!! AGAAACATAATCATAAAGTA+TGG + chr7_2:45224869-45224888 None:intergenic 20.0%
!!! TGTCGTTTATTTAAATAAAG+TGG + chr7_2:45224900-45224919 None:intergenic 20.0%
!!! TCTATTTTTTAATCTTAAGG+TGG - chr7_2:45225169-45225188 Msa1059280:intron 20.0%
!!! TGATATTTTTCTTGAAGTTA+TGG - chr7_2:45223296-45223315 Msa1059280:CDS 20.0%
!!! CCATATTTTGAAAACAATAA+AGG + chr7_2:45223331-45223350 None:intergenic 20.0%
!!! CCTTTATTGTTTTCAAAATA+TGG - chr7_2:45223328-45223347 Msa1059280:CDS 20.0%
!!! AAAGTTGTAAACTTTTAATC+AGG - chr7_2:45223390-45223409 Msa1059280:intron 20.0%
!!! AAGTTGTAAACTTTTAATCA+GGG - chr7_2:45223391-45223410 Msa1059280:intron 20.0%
!!! ATTTTTGAGATTATGTTGTT+GGG - chr7_2:45223955-45223974 Msa1059280:intron 20.0%
!!! TTTTTCTGATATATATGTTG+TGG - chr7_2:45224165-45224184 Msa1059280:intron 20.0%
!!! TAATGGTTTGATTTTGATTA+TGG - chr7_2:45224209-45224228 Msa1059280:intron 20.0%
!!! CTTGAAATATTTTCATTACT+AGG - chr7_2:45224303-45224322 Msa1059280:intron 20.0%
!! GAAACATAATCATAAAGTAT+GGG + chr7_2:45224868-45224887 None:intergenic 20.0%
!! AGAAACATAATCATAAAGTA+TGG + chr7_2:45224869-45224888 None:intergenic 20.0%
!!! TGTCGTTTATTTAAATAAAG+TGG + chr7_2:45224900-45224919 None:intergenic 20.0%
!!! TCTATTTTTTAATCTTAAGG+TGG - chr7_2:45225169-45225188 Msa1059280:intron 20.0%
!! TTGTTTTCAAAATATGGTGT+TGG - chr7_2:45223334-45223353 Msa1059280:CDS 25.0%
!! TGTTTTCAAAATATGGTGTT+GGG - chr7_2:45223335-45223354 Msa1059280:CDS 25.0%
! AGTTTACAACTTTCTTACAA+TGG + chr7_2:45223383-45223402 None:intergenic 25.0%
! ACTATATATGCATCTTAACA+TGG + chr7_2:45223447-45223466 None:intergenic 25.0%
!!! TATTATCTATGTTGGTAATG+TGG - chr7_2:45223536-45223555 Msa1059280:intron 25.0%
!!! ATTATCTATGTTGGTAATGT+GGG - chr7_2:45223537-45223556 Msa1059280:intron 25.0%
!! CATAACAGATACAAATGTTT+TGG + chr7_2:45223673-45223692 None:intergenic 25.0%
! CAAAACATTTGTATCTGTTA+TGG - chr7_2:45223671-45223690 Msa1059280:intron 25.0%
!!! CATATCATTTTGATATTACC+AGG - chr7_2:45223730-45223749 Msa1059280:intron 25.0%
! TTTGATATTACCAGGATAAT+TGG - chr7_2:45223738-45223757 Msa1059280:intron 25.0%
! TTGATATTACCAGGATAATT+GGG - chr7_2:45223739-45223758 Msa1059280:intron 25.0%
! TCAAAAAGAGCAAAACAATT+CGG + chr7_2:45223806-45223825 None:intergenic 25.0%
!!! TTTTCTGTTATTTTCCTTGT+TGG - chr7_2:45223865-45223884 Msa1059280:CDS 25.0%
! CAAATTATCTATCATGCTAA+GGG + chr7_2:45223894-45223913 None:intergenic 25.0%
!!! GATTTTTGAGATTATGTTGT+TGG - chr7_2:45223954-45223973 Msa1059280:intron 25.0%
!!! AAACTATTGTTTTGTATGTC+AGG - chr7_2:45223986-45224005 Msa1059280:intron 25.0%
! TAACATGCTATTCATTCTAA+TGG + chr7_2:45224098-45224117 None:intergenic 25.0%
!!! CATGTTAGTTTGTTATTGTA+CGG - chr7_2:45224111-45224130 Msa1059280:intron 25.0%
!!! ATGTTAGTTTGTTATTGTAC+GGG - chr7_2:45224112-45224131 Msa1059280:intron 25.0%
! AATCAAACCATTACAATAAC+AGG + chr7_2:45224202-45224221 None:intergenic 25.0%
!! TTTCAAGCAAAGCTTTTAAA+CGG + chr7_2:45224290-45224309 None:intergenic 25.0%
!! TTTTTGTTACATAACAAGTG+AGG - chr7_2:45224334-45224353 Msa1059280:intron 25.0%
! TTGTCACAAAATAATAATCG+TGG - chr7_2:45224931-45224950 Msa1059280:intron 25.0%
! ATAATCAAAAAATCTTTCCC+AGG - chr7_2:45225037-45225056 Msa1059280:intron 25.0%
! TAAGAAAACACAACTTAGTA+AGG - chr7_2:45225135-45225154 Msa1059280:intron 25.0%
!!! ATTTTTTAATCTTAAGGTGG+TGG - chr7_2:45225172-45225191 Msa1059280:intron 25.0%
!! TTGTTTTCAAAATATGGTGT+TGG - chr7_2:45223334-45223353 Msa1059280:CDS 25.0%
!! TGTTTTCAAAATATGGTGTT+GGG - chr7_2:45223335-45223354 Msa1059280:CDS 25.0%
! AGTTTACAACTTTCTTACAA+TGG + chr7_2:45223383-45223402 None:intergenic 25.0%
! ACTATATATGCATCTTAACA+TGG + chr7_2:45223447-45223466 None:intergenic 25.0%
!!! TATTATCTATGTTGGTAATG+TGG - chr7_2:45223536-45223555 Msa1059280:intron 25.0%
!!! ATTATCTATGTTGGTAATGT+GGG - chr7_2:45223537-45223556 Msa1059280:intron 25.0%
!! CATAACAGATACAAATGTTT+TGG + chr7_2:45223673-45223692 None:intergenic 25.0%
! CAAAACATTTGTATCTGTTA+TGG - chr7_2:45223671-45223690 Msa1059280:intron 25.0%
!!! CATATCATTTTGATATTACC+AGG - chr7_2:45223730-45223749 Msa1059280:intron 25.0%
! TTTGATATTACCAGGATAAT+TGG - chr7_2:45223738-45223757 Msa1059280:intron 25.0%
! TTGATATTACCAGGATAATT+GGG - chr7_2:45223739-45223758 Msa1059280:intron 25.0%
! TCAAAAAGAGCAAAACAATT+CGG + chr7_2:45223806-45223825 None:intergenic 25.0%
!!! TTTTCTGTTATTTTCCTTGT+TGG - chr7_2:45223865-45223884 Msa1059280:CDS 25.0%
! CAAATTATCTATCATGCTAA+GGG + chr7_2:45223894-45223913 None:intergenic 25.0%
!!! GATTTTTGAGATTATGTTGT+TGG - chr7_2:45223954-45223973 Msa1059280:intron 25.0%
!!! AAACTATTGTTTTGTATGTC+AGG - chr7_2:45223986-45224005 Msa1059280:intron 25.0%
! TAACATGCTATTCATTCTAA+TGG + chr7_2:45224098-45224117 None:intergenic 25.0%
!!! CATGTTAGTTTGTTATTGTA+CGG - chr7_2:45224111-45224130 Msa1059280:intron 25.0%
!!! ATGTTAGTTTGTTATTGTAC+GGG - chr7_2:45224112-45224131 Msa1059280:intron 25.0%
! AATCAAACCATTACAATAAC+AGG + chr7_2:45224202-45224221 None:intergenic 25.0%
!! TTTCAAGCAAAGCTTTTAAA+CGG + chr7_2:45224290-45224309 None:intergenic 25.0%
!! TTTTTGTTACATAACAAGTG+AGG - chr7_2:45224334-45224353 Msa1059280:intron 25.0%
! TTGTCACAAAATAATAATCG+TGG - chr7_2:45224931-45224950 Msa1059280:intron 25.0%
! ATAATCAAAAAATCTTTCCC+AGG - chr7_2:45225037-45225056 Msa1059280:intron 25.0%
! TAAGAAAACACAACTTAGTA+AGG - chr7_2:45225135-45225154 Msa1059280:intron 25.0%
!!! ATTTTTTAATCTTAAGGTGG+TGG - chr7_2:45225172-45225191 Msa1059280:intron 25.0%
TTATGGTTGTTAGTGGTTAT+TGG - chr7_2:45223688-45223707 Msa1059280:intron 30.0%
! GATATGCAAACATGCAATTT+TGG + chr7_2:45223716-45223735 None:intergenic 30.0%
TGATATTACCAGGATAATTG+GGG - chr7_2:45223740-45223759 Msa1059280:intron 30.0%
CCAAATTATCTATCATGCTA+AGG + chr7_2:45223895-45223914 None:intergenic 30.0%
CCTTAGCATGATAGATAATT+TGG - chr7_2:45223892-45223911 Msa1059280:CDS 30.0%
TATATGTTGTGGTGACTTTA+AGG - chr7_2:45224176-45224195 Msa1059280:intron 30.0%
! TTTAAGGCCTGTTATTGTAA+TGG - chr7_2:45224192-45224211 Msa1059280:intron 30.0%
! TTCAAGCAAAGCTTTTAAAC+GGG + chr7_2:45224289-45224308 None:intergenic 30.0%
GCTTATTTGGTTACATTAAC+TGG - chr7_2:45224371-45224390 Msa1059280:intron 30.0%
AACCTACCTAACATTAATCT+GGG - chr7_2:45224477-45224496 Msa1059280:intron 30.0%
AGTGTGCTTCCTAATAAAAT+GGG + chr7_2:45224505-45224524 None:intergenic 30.0%
TAGTGTGCTTCCTAATAAAA+TGG + chr7_2:45224506-45224525 None:intergenic 30.0%
ATCTCATAATAACAACTCTG+AGG - chr7_2:45224809-45224828 Msa1059280:intron 30.0%
ACAAAATAATAATCGTGGAG+TGG - chr7_2:45224936-45224955 Msa1059280:intron 30.0%
AAACAGGTGTCAAAAATAGA+GGG + chr7_2:45224997-45225016 None:intergenic 30.0%
AAAACAGGTGTCAAAAATAG+AGG + chr7_2:45224998-45225017 None:intergenic 30.0%
AAAAGCCTCAATCACATTTA+AGG - chr7_2:45225088-45225107 Msa1059280:intron 30.0%
CATTACCTTAAATGTGATTG+AGG + chr7_2:45225096-45225115 None:intergenic 30.0%
TACCATATACACTAAAAGGA+AGG - chr7_2:45225201-45225220 Msa1059280:intron 30.0%
TGGAAGAAATAGAAGACATT+GGG - chr7_2:45225230-45225249 Msa1059280:CDS 30.0%
TTATGGTTGTTAGTGGTTAT+TGG - chr7_2:45223688-45223707 Msa1059280:intron 30.0%
! GATATGCAAACATGCAATTT+TGG + chr7_2:45223716-45223735 None:intergenic 30.0%
TGATATTACCAGGATAATTG+GGG - chr7_2:45223740-45223759 Msa1059280:intron 30.0%
CCAAATTATCTATCATGCTA+AGG + chr7_2:45223895-45223914 None:intergenic 30.0%
CCTTAGCATGATAGATAATT+TGG - chr7_2:45223892-45223911 Msa1059280:CDS 30.0%
TATATGTTGTGGTGACTTTA+AGG - chr7_2:45224176-45224195 Msa1059280:intron 30.0%
! TTTAAGGCCTGTTATTGTAA+TGG - chr7_2:45224192-45224211 Msa1059280:intron 30.0%
! TTCAAGCAAAGCTTTTAAAC+GGG + chr7_2:45224289-45224308 None:intergenic 30.0%
GCTTATTTGGTTACATTAAC+TGG - chr7_2:45224371-45224390 Msa1059280:intron 30.0%
AACCTACCTAACATTAATCT+GGG - chr7_2:45224477-45224496 Msa1059280:intron 30.0%
AGTGTGCTTCCTAATAAAAT+GGG + chr7_2:45224505-45224524 None:intergenic 30.0%
TAGTGTGCTTCCTAATAAAA+TGG + chr7_2:45224506-45224525 None:intergenic 30.0%
ATCTCATAATAACAACTCTG+AGG - chr7_2:45224809-45224828 Msa1059280:intron 30.0%
ACAAAATAATAATCGTGGAG+TGG - chr7_2:45224936-45224955 Msa1059280:intron 30.0%
AAACAGGTGTCAAAAATAGA+GGG + chr7_2:45224997-45225016 None:intergenic 30.0%
AAAACAGGTGTCAAAAATAG+AGG + chr7_2:45224998-45225017 None:intergenic 30.0%
AAAAGCCTCAATCACATTTA+AGG - chr7_2:45225088-45225107 Msa1059280:intron 30.0%
CATTACCTTAAATGTGATTG+AGG + chr7_2:45225096-45225115 None:intergenic 30.0%
TACCATATACACTAAAAGGA+AGG - chr7_2:45225201-45225220 Msa1059280:intron 30.0%
TGGAAGAAATAGAAGACATT+GGG - chr7_2:45225230-45225249 Msa1059280:CDS 30.0%
ATACAGACACATACACAAAC+AGG + chr7_2:45223481-45223500 None:intergenic 35.0%
TGTTTGTGTATGTGTCTGTA+TGG - chr7_2:45223480-45223499 Msa1059280:intron 35.0%
GTTTGTGTATGTGTCTGTAT+GGG - chr7_2:45223481-45223500 Msa1059280:intron 35.0%
GTATCTGTTATGGTTGTTAG+TGG - chr7_2:45223681-45223700 Msa1059280:intron 35.0%
ACAAAAAACCCCAATTATCC+TGG + chr7_2:45223751-45223770 None:intergenic 35.0%
TTTGTATGTCAGGAAAAACG+AGG - chr7_2:45223996-45224015 Msa1059280:intron 35.0%
!! GCTTTGAATCTCTGTTCTTT+TGG + chr7_2:45224030-45224049 None:intergenic 35.0%
TAACTGGTTAACAGTTTCAG+TGG - chr7_2:45224387-45224406 Msa1059280:intron 35.0%
GAACCTACCTAACATTAATC+TGG - chr7_2:45224476-45224495 Msa1059280:intron 35.0%
ACTATGATTGCTGTACATGA+AGG - chr7_2:45224648-45224667 Msa1059280:intron 35.0%
!! TTTATGGGAGGCTTTGAATT+GGG - chr7_2:45224683-45224702 Msa1059280:intron 35.0%
TTGAATTGGGTTCTTAACTC+AGG - chr7_2:45224696-45224715 Msa1059280:intron 35.0%
ATATGCCTACAGACTTAGAA+TGG + chr7_2:45224772-45224791 None:intergenic 35.0%
AAATAATAATCGTGGAGTGG+AGG - chr7_2:45224939-45224958 Msa1059280:intron 35.0%
AACAGGTGTCAAAAATAGAG+GGG + chr7_2:45224996-45225015 None:intergenic 35.0%
!! TTTTAATCTTAAGGTGGTGG+TGG - chr7_2:45225175-45225194 Msa1059280:intron 35.0%
! GAGGTACCATATACACTAAA+AGG - chr7_2:45225197-45225216 Msa1059280:intron 35.0%
! CTCCTTCCTTTTAGTGTATA+TGG + chr7_2:45225206-45225225 None:intergenic 35.0%
GTGGAAGAAATAGAAGACAT+TGG - chr7_2:45225229-45225248 Msa1059280:CDS 35.0%
AATAGAAGACATTGGGAGAA+TGG - chr7_2:45225237-45225256 Msa1059280:CDS 35.0%
ATACAGACACATACACAAAC+AGG + chr7_2:45223481-45223500 None:intergenic 35.0%
TGTTTGTGTATGTGTCTGTA+TGG - chr7_2:45223480-45223499 Msa1059280:intron 35.0%
GTTTGTGTATGTGTCTGTAT+GGG - chr7_2:45223481-45223500 Msa1059280:intron 35.0%
GTATCTGTTATGGTTGTTAG+TGG - chr7_2:45223681-45223700 Msa1059280:intron 35.0%
ACAAAAAACCCCAATTATCC+TGG + chr7_2:45223751-45223770 None:intergenic 35.0%
TTTGTATGTCAGGAAAAACG+AGG - chr7_2:45223996-45224015 Msa1059280:intron 35.0%
!! GCTTTGAATCTCTGTTCTTT+TGG + chr7_2:45224030-45224049 None:intergenic 35.0%
TAACTGGTTAACAGTTTCAG+TGG - chr7_2:45224387-45224406 Msa1059280:intron 35.0%
GAACCTACCTAACATTAATC+TGG - chr7_2:45224476-45224495 Msa1059280:intron 35.0%
ACTATGATTGCTGTACATGA+AGG - chr7_2:45224648-45224667 Msa1059280:intron 35.0%
!! TTTATGGGAGGCTTTGAATT+GGG - chr7_2:45224683-45224702 Msa1059280:intron 35.0%
TTGAATTGGGTTCTTAACTC+AGG - chr7_2:45224696-45224715 Msa1059280:intron 35.0%
ATATGCCTACAGACTTAGAA+TGG + chr7_2:45224772-45224791 None:intergenic 35.0%
AAATAATAATCGTGGAGTGG+AGG - chr7_2:45224939-45224958 Msa1059280:intron 35.0%
AACAGGTGTCAAAAATAGAG+GGG + chr7_2:45224996-45225015 None:intergenic 35.0%
!! TTTTAATCTTAAGGTGGTGG+TGG - chr7_2:45225175-45225194 Msa1059280:intron 35.0%
! GAGGTACCATATACACTAAA+AGG - chr7_2:45225197-45225216 Msa1059280:intron 35.0%
! CTCCTTCCTTTTAGTGTATA+TGG + chr7_2:45225206-45225225 None:intergenic 35.0%
GTGGAAGAAATAGAAGACAT+TGG - chr7_2:45225229-45225248 Msa1059280:CDS 35.0%
AATAGAAGACATTGGGAGAA+TGG - chr7_2:45225237-45225256 Msa1059280:CDS 35.0%
!! GGTGTTGGGTATTGAAGTTA+TGG - chr7_2:45223349-45223368 Msa1059280:CDS 40.0%
GTGTATCACTCTGTCATAAC+TGG + chr7_2:45224066-45224085 None:intergenic 40.0%
! ATTGTACGGGTGCTATGAAA+TGG - chr7_2:45224125-45224144 Msa1059280:intron 40.0%
AGTCGATATATGTTCAACGC+AGG + chr7_2:45224244-45224263 None:intergenic 40.0%
ATAACAAGTGAGGATGCGTT+TGG - chr7_2:45224344-45224363 Msa1059280:intron 40.0%
TGCGTTTGGATGAGCTTATT+TGG - chr7_2:45224358-45224377 Msa1059280:intron 40.0%
AGATGTAGAAGCAACTAGAG+TGG - chr7_2:45224446-45224465 Msa1059280:intron 40.0%
AGCCCAGATTAATGTTAGGT+AGG + chr7_2:45224482-45224501 None:intergenic 40.0%
! ATCTGGGCTCCCATTTTATT+AGG - chr7_2:45224493-45224512 Msa1059280:intron 40.0%
TCGTAGCTCTCGAATAAAAC+AGG + chr7_2:45224547-45224566 None:intergenic 40.0%
TGCGCGATAATAAGGGTAAA+GGG - chr7_2:45224591-45224610 Msa1059280:intron 40.0%
!! TTGTTTCTGCTTGCACAGAT+TGG - chr7_2:45224619-45224638 Msa1059280:intron 40.0%
TGTACATGAAGGTGAAGCTT+TGG - chr7_2:45224659-45224678 Msa1059280:intron 40.0%
GTACATGAAGGTGAAGCTTT+GGG - chr7_2:45224660-45224679 Msa1059280:intron 40.0%
!! AAGGTGAAGCTTTGGGTTTA+TGG - chr7_2:45224667-45224686 Msa1059280:intron 40.0%
!! AGGTGAAGCTTTGGGTTTAT+GGG - chr7_2:45224668-45224687 Msa1059280:intron 40.0%
!! GTTTATGGGAGGCTTTGAAT+TGG - chr7_2:45224682-45224701 Msa1059280:intron 40.0%
!! TAGAATGGATAGCATCGACT+AGG + chr7_2:45224757-45224776 None:intergenic 40.0%
GCTATCCATTCTAAGTCTGT+AGG - chr7_2:45224764-45224783 Msa1059280:intron 40.0%
ACAGGTGTCAAAAATAGAGG+GGG + chr7_2:45224995-45225014 None:intergenic 40.0%
!! GGTGTTGGGTATTGAAGTTA+TGG - chr7_2:45223349-45223368 Msa1059280:CDS 40.0%
GTGTATCACTCTGTCATAAC+TGG + chr7_2:45224066-45224085 None:intergenic 40.0%
! ATTGTACGGGTGCTATGAAA+TGG - chr7_2:45224125-45224144 Msa1059280:intron 40.0%
AGTCGATATATGTTCAACGC+AGG + chr7_2:45224244-45224263 None:intergenic 40.0%
ATAACAAGTGAGGATGCGTT+TGG - chr7_2:45224344-45224363 Msa1059280:intron 40.0%
TGCGTTTGGATGAGCTTATT+TGG - chr7_2:45224358-45224377 Msa1059280:intron 40.0%
AGATGTAGAAGCAACTAGAG+TGG - chr7_2:45224446-45224465 Msa1059280:intron 40.0%
AGCCCAGATTAATGTTAGGT+AGG + chr7_2:45224482-45224501 None:intergenic 40.0%
! ATCTGGGCTCCCATTTTATT+AGG - chr7_2:45224493-45224512 Msa1059280:intron 40.0%
TCGTAGCTCTCGAATAAAAC+AGG + chr7_2:45224547-45224566 None:intergenic 40.0%
TGCGCGATAATAAGGGTAAA+GGG - chr7_2:45224591-45224610 Msa1059280:intron 40.0%
!! TTGTTTCTGCTTGCACAGAT+TGG - chr7_2:45224619-45224638 Msa1059280:intron 40.0%
TGTACATGAAGGTGAAGCTT+TGG - chr7_2:45224659-45224678 Msa1059280:intron 40.0%
GTACATGAAGGTGAAGCTTT+GGG - chr7_2:45224660-45224679 Msa1059280:intron 40.0%
!! AAGGTGAAGCTTTGGGTTTA+TGG - chr7_2:45224667-45224686 Msa1059280:intron 40.0%
!! AGGTGAAGCTTTGGGTTTAT+GGG - chr7_2:45224668-45224687 Msa1059280:intron 40.0%
!! GTTTATGGGAGGCTTTGAAT+TGG - chr7_2:45224682-45224701 Msa1059280:intron 40.0%
!! TAGAATGGATAGCATCGACT+AGG + chr7_2:45224757-45224776 None:intergenic 40.0%
GCTATCCATTCTAAGTCTGT+AGG - chr7_2:45224764-45224783 Msa1059280:intron 40.0%
ACAGGTGTCAAAAATAGAGG+GGG + chr7_2:45224995-45225014 None:intergenic 40.0%
GTCTGTATGGGTCACACTAT+TGG - chr7_2:45223493-45223512 Msa1059280:intron 45.0%
AAACCTTCACTCCTCCATGA+GGG + chr7_2:45223603-45223622 None:intergenic 45.0%
TAAACCTTCACTCCTCCATG+AGG + chr7_2:45223604-45223623 None:intergenic 45.0%
CATGCTAAGGGAAACCAACA+AGG + chr7_2:45223882-45223901 None:intergenic 45.0%
!! CATAACTGGCTTGTTCTCGT+TGG + chr7_2:45224052-45224071 None:intergenic 45.0%
CTGGTTAACAGTTTCAGTGG+TGG - chr7_2:45224390-45224409 Msa1059280:intron 45.0%
TGGGAGCCCAGATTAATGTT+AGG + chr7_2:45224486-45224505 None:intergenic 45.0%
AAACTGCCTGCGCGATAATA+AGG - chr7_2:45224583-45224602 Msa1059280:intron 45.0%
AACTGCCTGCGCGATAATAA+GGG - chr7_2:45224584-45224603 Msa1059280:intron 45.0%
CTTTACCCTTATTATCGCGC+AGG + chr7_2:45224592-45224611 None:intergenic 45.0%
CTGCGCGATAATAAGGGTAA+AGG - chr7_2:45224590-45224609 Msa1059280:intron 45.0%
!! TGAAGCTTTGGGTTTATGGG+AGG - chr7_2:45224671-45224690 Msa1059280:intron 45.0%
TAATAATCGTGGAGTGGAGG+CGG - chr7_2:45224942-45224961 Msa1059280:intron 45.0%
AGGTGTCAAAAATAGAGGGG+GGG + chr7_2:45224993-45225012 None:intergenic 45.0%
CAGGTGTCAAAAATAGAGGG+GGG + chr7_2:45224994-45225013 None:intergenic 45.0%
GCGCAAGATTGTGCAAAAAC+AGG + chr7_2:45225013-45225032 None:intergenic 45.0%
CTCATCTTTCTCGTCATCCT+GGG + chr7_2:45225057-45225076 None:intergenic 45.0%
ACTCATCTTTCTCGTCATCC+TGG + chr7_2:45225058-45225077 None:intergenic 45.0%
!! TAATCTTAAGGTGGTGGTGG+AGG - chr7_2:45225178-45225197 Msa1059280:intron 45.0%
CACTAAAAGGAAGGAGCAAG+TGG - chr7_2:45225210-45225229 Msa1059280:intron 45.0%
AGACATTGGGAGAATGGCTT+TGG - chr7_2:45225243-45225262 Msa1059280:CDS 45.0%
GACATTGGGAGAATGGCTTT+GGG - chr7_2:45225244-45225263 Msa1059280:CDS 45.0%
GTCTGTATGGGTCACACTAT+TGG - chr7_2:45223493-45223512 Msa1059280:intron 45.0%
AAACCTTCACTCCTCCATGA+GGG + chr7_2:45223603-45223622 None:intergenic 45.0%
TAAACCTTCACTCCTCCATG+AGG + chr7_2:45223604-45223623 None:intergenic 45.0%
CATGCTAAGGGAAACCAACA+AGG + chr7_2:45223882-45223901 None:intergenic 45.0%
!! CATAACTGGCTTGTTCTCGT+TGG + chr7_2:45224052-45224071 None:intergenic 45.0%
CTGGTTAACAGTTTCAGTGG+TGG - chr7_2:45224390-45224409 Msa1059280:intron 45.0%
TGGGAGCCCAGATTAATGTT+AGG + chr7_2:45224486-45224505 None:intergenic 45.0%
AAACTGCCTGCGCGATAATA+AGG - chr7_2:45224583-45224602 Msa1059280:intron 45.0%
AACTGCCTGCGCGATAATAA+GGG - chr7_2:45224584-45224603 Msa1059280:intron 45.0%
CTTTACCCTTATTATCGCGC+AGG + chr7_2:45224592-45224611 None:intergenic 45.0%
CTGCGCGATAATAAGGGTAA+AGG - chr7_2:45224590-45224609 Msa1059280:intron 45.0%
!! TGAAGCTTTGGGTTTATGGG+AGG - chr7_2:45224671-45224690 Msa1059280:intron 45.0%
TAATAATCGTGGAGTGGAGG+CGG - chr7_2:45224942-45224961 Msa1059280:intron 45.0%
AGGTGTCAAAAATAGAGGGG+GGG + chr7_2:45224993-45225012 None:intergenic 45.0%
CAGGTGTCAAAAATAGAGGG+GGG + chr7_2:45224994-45225013 None:intergenic 45.0%
GCGCAAGATTGTGCAAAAAC+AGG + chr7_2:45225013-45225032 None:intergenic 45.0%
CTCATCTTTCTCGTCATCCT+GGG + chr7_2:45225057-45225076 None:intergenic 45.0%
ACTCATCTTTCTCGTCATCC+TGG + chr7_2:45225058-45225077 None:intergenic 45.0%
!! TAATCTTAAGGTGGTGGTGG+AGG - chr7_2:45225178-45225197 Msa1059280:intron 45.0%
CACTAAAAGGAAGGAGCAAG+TGG - chr7_2:45225210-45225229 Msa1059280:intron 45.0%
AGACATTGGGAGAATGGCTT+TGG - chr7_2:45225243-45225262 Msa1059280:CDS 45.0%
GACATTGGGAGAATGGCTTT+GGG - chr7_2:45225244-45225263 Msa1059280:CDS 45.0%
AAGAAATGCGTAGCCCCTCA+TGG - chr7_2:45223586-45223605 Msa1059280:intron 50.0%
AACCTTCACTCCTCCATGAG+GGG + chr7_2:45223602-45223621 None:intergenic 50.0%
CAGGCAGTTTCTGTAGCTAG+TGG + chr7_2:45224573-45224592 None:intergenic 50.0%
AATAATCGTGGAGTGGAGGC+GGG - chr7_2:45224943-45224962 Msa1059280:intron 50.0%
TGTCAAAAATAGAGGGGGGG+GGG + chr7_2:45224990-45225009 None:intergenic 50.0%
GTGTCAAAAATAGAGGGGGG+GGG + chr7_2:45224991-45225010 None:intergenic 50.0%
GGTGTCAAAAATAGAGGGGG+GGG + chr7_2:45224992-45225011 None:intergenic 50.0%
AAGAAATGCGTAGCCCCTCA+TGG - chr7_2:45223586-45223605 Msa1059280:intron 50.0%
AACCTTCACTCCTCCATGAG+GGG + chr7_2:45223602-45223621 None:intergenic 50.0%
CAGGCAGTTTCTGTAGCTAG+TGG + chr7_2:45224573-45224592 None:intergenic 50.0%
AATAATCGTGGAGTGGAGGC+GGG - chr7_2:45224943-45224962 Msa1059280:intron 50.0%
TGTCAAAAATAGAGGGGGGG+GGG + chr7_2:45224990-45225009 None:intergenic 50.0%
GTGTCAAAAATAGAGGGGGG+GGG + chr7_2:45224991-45225010 None:intergenic 50.0%
GGTGTCAAAAATAGAGGGGG+GGG + chr7_2:45224992-45225011 None:intergenic 50.0%
AAATGCGTAGCCCCTCATGG+AGG - chr7_2:45223589-45223608 Msa1059280:intron 55.0%
ATAATCGTGGAGTGGAGGCG+GGG - chr7_2:45224944-45224963 Msa1059280:intron 55.0%
TCAAAAATAGAGGGGGGGGG+GGG + chr7_2:45224988-45225007 None:intergenic 55.0%
GTCAAAAATAGAGGGGGGGG+GGG + chr7_2:45224989-45225008 None:intergenic 55.0%
AAATGCGTAGCCCCTCATGG+AGG - chr7_2:45223589-45223608 Msa1059280:intron 55.0%
ATAATCGTGGAGTGGAGGCG+GGG - chr7_2:45224944-45224963 Msa1059280:intron 55.0%
TCAAAAATAGAGGGGGGGGG+GGG + chr7_2:45224988-45225007 None:intergenic 55.0%
GTCAAAAATAGAGGGGGGGG+GGG + chr7_2:45224989-45225008 None:intergenic 55.0%
AGCCCCTCATGGAGGAGTGA+AGG - chr7_2:45223597-45223616 Msa1059280:intron 60.0%
TAATCGTGGAGTGGAGGCGG+GGG - chr7_2:45224945-45224964 Msa1059280:intron 60.0%
AAAAATAGAGGGGGGGGGGG+GGG + chr7_2:45224986-45225005 None:intergenic 60.0%
CAAAAATAGAGGGGGGGGGG+GGG + chr7_2:45224987-45225006 None:intergenic 60.0%
AGCCCCTCATGGAGGAGTGA+AGG - chr7_2:45223597-45223616 Msa1059280:intron 60.0%
TAATCGTGGAGTGGAGGCGG+GGG - chr7_2:45224945-45224964 Msa1059280:intron 60.0%
AAAAATAGAGGGGGGGGGGG+GGG + chr7_2:45224986-45225005 None:intergenic 60.0%
CAAAAATAGAGGGGGGGGGG+GGG + chr7_2:45224987-45225006 None:intergenic 60.0%
GTGGAGGCGGGGGAAGAAAC+TGG - chr7_2:45224955-45224974 Msa1059280:intron 65.0%
AAAATAGAGGGGGGGGGGGG+GGG + chr7_2:45224985-45225004 None:intergenic 65.0%
GTGGAGGCGGGGGAAGAAAC+TGG - chr7_2:45224955-45224974 Msa1059280:intron 65.0%
AAAATAGAGGGGGGGGGGGG+GGG + chr7_2:45224985-45225004 None:intergenic 65.0%
AAATAGAGGGGGGGGGGGGG+GGG + chr7_2:45224984-45225003 None:intergenic 70.0%
AAATAGAGGGGGGGGGGGGG+GGG + chr7_2:45224984-45225003 None:intergenic 70.0%
AATAGAGGGGGGGGGGGGGG+GGG + chr7_2:45224983-45225002 None:intergenic 75.0%
AATAGAGGGGGGGGGGGGGG+GGG + chr7_2:45224983-45225002 None:intergenic 75.0%
! ATAGAGGGGGGGGGGGGGGG+GGG + chr7_2:45224982-45225001 None:intergenic 80.0%
! ATAGAGGGGGGGGGGGGGGG+GGG + chr7_2:45224982-45225001 None:intergenic 80.0%
! TAGAGGGGGGGGGGGGGGGG+GGG + chr7_2:45224981-45225000 None:intergenic 85.0%
! TAGAGGGGGGGGGGGGGGGG+GGG + chr7_2:45224981-45225000 None:intergenic 85.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 45223285 45225285 45223285 ID=Msa1059280;Name=Msa1059280
chr7_2 mRNA 45223285 45225285 45223285 ID=Msa1059280-mRNA-1;Parent=Msa1059280;Name=Msa1059280-mRNA-1;_AED=0.84;_eAED=0.84;_QI=0|0|0|0.25|1|1|4|0|102
chr7_2 exon 45225214 45225285 45225214 ID=Msa1059280-mRNA-1:exon:8225;Parent=Msa1059280-mRNA-1
chr7_2 exon 45224505 45224562 45224505 ID=Msa1059280-mRNA-1:exon:8224;Parent=Msa1059280-mRNA-1
chr7_2 exon 45223853 45223933 45223853 ID=Msa1059280-mRNA-1:exon:8223;Parent=Msa1059280-mRNA-1
chr7_2 exon 45223285 45223382 45223285 ID=Msa1059280-mRNA-1:exon:8222;Parent=Msa1059280-mRNA-1
chr7_2 CDS 45225214 45225285 45225214 ID=Msa1059280-mRNA-1:cds;Parent=Msa1059280-mRNA-1
chr7_2 CDS 45224505 45224562 45224505 ID=Msa1059280-mRNA-1:cds;Parent=Msa1059280-mRNA-1
chr7_2 CDS 45223853 45223933 45223853 ID=Msa1059280-mRNA-1:cds;Parent=Msa1059280-mRNA-1
chr7_2 CDS 45223285 45223382 45223285 ID=Msa1059280-mRNA-1:cds;Parent=Msa1059280-mRNA-1
Gene Sequence

>Msa1059280

ATGGCGTGGTTTGATATTTTTCTTGAAGTTATGGAATTCTCTGCCTTTATTGTTTTCAAAATATGGTGTTGGGAAAAACGAGGAGCAGAAGCCAAAAGAACAGAGATTCAAAGCCAACGAGAACAAGCCAATTGGTTGCAAACTATGATTGCTGTACATGAAGGTGAAGCTTTGGGTTTATGGGAGGCTTTGAATTGGGTTCTTAACTCAGGTGGTGGTGGAGGTACCATATACACTAAAAGGAAGGAGCAAGTGGAAGAAATAGAAGACATTGGGAGAATGGCTTTGGGTTTTATTTTTCAATCTTAA

Protein sequence

>Msa1059280

MAWFDIFLEVMEFSAFIVFKIWCWEKRGAEAKRTEIQSQREQANWLQTMIAVHEGEALGLWEALNWVLNSGGGGGTIYTKRKEQVEEIEDIGRMALGFIFQS*