AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1112540

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1112540 MtrunA17_Chr7g0247311 100.000 259 0 0 1 259 1 259 0.0 528
Msa1112540 MtrunA17_Chr5g0405281 95.736 258 11 0 1 258 1 258 0.0 508
Msa1112540 MtrunA17_Chr3g0094604 33.333 186 112 4 29 214 49 222 1.00e-24 99.4
Msa1112540 MtrunA17_CPg0492514 33.333 186 112 4 29 214 49 222 1.06e-24 99.0
Msa1112540 MtrunA17_Chr3g0090924 33.333 186 112 4 29 214 49 222 1.06e-24 99.0
Msa1112540 MtrunA17_Chr4g0015984 33.333 186 112 4 29 214 49 222 1.06e-24 99.0
Msa1112540 MtrunA17_Chr4g0017184 33.333 186 112 4 29 214 56 229 4.70e-24 97.4
Msa1112540 MtrunA17_Chr2g0283311 41.026 117 63 3 98 214 51 161 7.29e-19 82.0
Msa1112540 MtrunA17_Chr4g0024444 29.078 141 93 2 29 169 49 182 4.53e-14 68.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1112540 AT4G36130.1 93.023 258 18 0 1 258 1 258 0.0 498
Msa1112540 AT2G18020.1 92.636 258 19 0 1 258 1 258 4.17e-175 483
Msa1112540 AT3G51190.1 84.519 239 36 1 1 238 1 239 3.59e-153 427
Msa1112540 ATCG01310.1 32.632 190 108 4 29 214 60 233 1.49e-25 102
Msa1112540 ATCG00830.1 32.632 190 108 4 29 214 60 233 1.49e-25 102
Msa1112540 AT2G44065.3 36.691 139 80 3 97 234 58 189 9.45e-17 77.0
Msa1112540 AT2G44065.1 36.691 139 80 3 97 234 58 189 9.45e-17 77.0
Msa1112540 AT2G44065.2 36.691 139 80 3 97 234 58 189 9.45e-17 77.0

Find 115 sgRNAs with CRISPR-Local

Find 314 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCAAATTTCTTTGAAATTCT+TGG 0.197598 7_3:-58534751 Msa1112540:three_prime_UTR
ATTTCTCGCCGCCGCTAAAA+TGG 0.206310 7_3:-58536547 Msa1112540:exon
GACACGAATTAATCAATAAA+TGG 0.230920 7_3:+58534772 None:intergenic
CCAAGAGGACTGGTCGTCTT+AGG 0.241658 7_3:-58535058 Msa1112540:CDS
AATCTAAACTGCTTATTTAT+CGG 0.245431 7_3:+58535007 None:intergenic
GTCACTTGGCACAATCTTCT+TGG 0.305373 7_3:+58535316 None:intergenic
GAACTTGTGGTAAGCATTAC+CGG 0.310318 7_3:+58535232 None:intergenic
AGTTTAACAAGAAACAAAAT+TGG 0.311409 7_3:+58534953 None:intergenic
CTACTGATTTATTATTTGTT+TGG 0.333730 7_3:-58534832 Msa1112540:three_prime_UTR
CCTCCGTGGGGATGCTCAAC+AGG 0.334759 7_3:+58535161 None:intergenic
GTTTATTTACTGCGGTAAAA+AGG 0.335992 7_3:-58536271 Msa1112540:CDS
GCCATGATTGGGCAAGTTGC+TGG 0.355007 7_3:-58535287 Msa1112540:CDS
GAAGTCGAGGGAACGGAAAC+GGG 0.358567 7_3:+58536449 None:intergenic
CAAGAGGACTGGTCGTCTTA+GGG 0.368154 7_3:-58535057 Msa1112540:CDS
AGTGACTGCAGGGCCATGAT+TGG 0.371357 7_3:-58535299 Msa1112540:CDS
TACCTAGAGGTATCATTATC+GGG 0.400292 7_3:+58536108 None:intergenic
GCTCCTTCTGTTTCTGATAA+CGG 0.408848 7_3:+58536328 None:intergenic
ATACCTAGAGGTATCATTAT+CGG 0.410207 7_3:+58536107 None:intergenic
GGAAACGGGCGGGGCCTTTG+CGG 0.417226 7_3:+58536463 None:intergenic
TTACAAATCACAGCACCTTC+AGG 0.419108 7_3:+58536207 None:intergenic
GCCTTTGCGGTGATGTGTGT+GGG 0.435541 7_3:+58536476 None:intergenic
ACCAGCAACTTGCCCAATCA+TGG 0.440792 7_3:+58535286 None:intergenic
TTTCTCGCCGCCGCTAAAAT+GGG 0.440883 7_3:-58536546 Msa1112540:exon
TCCACCTCTAAAACCAAGCC+AGG 0.440999 7_3:-58536607 None:intergenic
CGAGGGAACGGAAACGGGCG+GGG 0.441434 7_3:+58536454 None:intergenic
AACTGAGAAGCCAATGTTGA+AGG 0.451466 7_3:-58535255 Msa1112540:CDS
GGAGGTAATCACCAACATAT+TGG 0.453068 7_3:-58535140 Msa1112540:CDS
CGTCAGTGACGACTCCTTTG+AGG 0.454086 7_3:+58536409 None:intergenic
TCGAGGGAACGGAAACGGGC+GGG 0.454887 7_3:+58536453 None:intergenic
ATCAATAAATGGCGTGTCAC+CGG 0.455488 7_3:+58534783 None:intergenic
CTCATTGCTGCCAAGAGGAC+TGG 0.455821 7_3:-58535068 Msa1112540:CDS
GTCAGACGTGATGCTCCTCC+TGG 0.456100 7_3:-58535104 Msa1112540:CDS
CGAAGTCGAGGGAACGGAAA+CGG 0.463299 7_3:+58536448 None:intergenic
ATGGAGAAGGGTAGAGAGTG+AGG 0.464376 7_3:+58536568 None:intergenic
GCATTACCGGCCTTCAACAT+TGG 0.473847 7_3:+58535245 None:intergenic
GCAAGAGGAGCACCGCGACC+TGG 0.474064 7_3:+58536375 None:intergenic
TACAGGATCAAGCTTCCATC+TGG 0.475040 7_3:-58535341 Msa1112540:intron
AGATTGTGCCAAGTGACTGC+AGG 0.475752 7_3:-58535310 Msa1112540:CDS
GAGAAGTTCTAACCCTGGCT+TGG 0.480508 7_3:+58536594 None:intergenic
CCTCTTAGATCTATTCCTGA+AGG 0.484222 7_3:-58536222 Msa1112540:CDS
AATTATGCAGCCATGACACT+TGG 0.485704 7_3:+58534723 None:intergenic
AACTGTTGGCCTAAGGTTCG+TGG 0.487779 7_3:-58535197 Msa1112540:CDS
GCTGCTGAGGGTTTGTATAC+CGG 0.491518 7_3:-58536297 Msa1112540:CDS
TGTCATCCGTGCCCAACGTA+AGG 0.492175 7_3:-58536520 Msa1112540:CDS
CGTTTCCGTTCCCTCGACTT+CGG 0.496555 7_3:-58536447 Msa1112540:CDS
GTGACTGCAGGGCCATGATT+GGG 0.501153 7_3:-58535298 Msa1112540:CDS
GATTTATTATTTGTTTGGAA+TGG 0.507577 7_3:-58534827 Msa1112540:three_prime_UTR
GGCCTTTGCGGTGATGTGTG+TGG 0.508332 7_3:+58536475 None:intergenic
GCTCCTCCTGGACAGAAGGT+TGG 0.508354 7_3:-58535092 Msa1112540:CDS
GGAACCTGCTCCCTTACGTT+GGG 0.510705 7_3:+58536509 None:intergenic
CGTGCCCAACGTAAGGGAGC+AGG 0.512987 7_3:-58536513 Msa1112540:CDS
TCCTCTTCACTCTGAACTTG+TGG 0.513229 7_3:+58535219 None:intergenic
CCTAAGACGACCAGTCCTCT+TGG 0.514272 7_3:+58535058 None:intergenic
ATTGGGCAAGTTGCTGGTGG+TGG 0.517875 7_3:-58535281 Msa1112540:CDS
ATGAGACCAACCTTCTGTCC+AGG 0.521573 7_3:+58535086 None:intergenic
ATCATGGCCCTGCAGTCACT+TGG 0.530422 7_3:+58535302 None:intergenic
TGCTGTGATTTGTAATGTTG+AGG 0.534385 7_3:-58536199 Msa1112540:CDS
AGCATCACGTCTGACAGTAC+TGG 0.537912 7_3:+58535112 None:intergenic
TTGGTGATTACCTCCTCCGT+GGG 0.541006 7_3:+58535148 None:intergenic
GTTGAGCATCCCCACGGAGG+AGG 0.543276 7_3:-58535158 Msa1112540:CDS
AATAAATCAGTAGGCAGTGA+AGG 0.544552 7_3:+58534842 None:intergenic
CGTTGCGTTCGCCGAAGTCG+AGG 0.545445 7_3:+58536436 None:intergenic
GAAGAGGAACTGTTGGCCTA+AGG 0.546745 7_3:-58535204 Msa1112540:CDS
TCAGTAGGCAGTGAAGGTGC+AGG 0.548307 7_3:+58534848 None:intergenic
ACTGACGTCATCCACGATCC+AGG 0.551926 7_3:-58536393 Msa1112540:CDS
TGTAATGTTGAGGGTCATGT+TGG 0.553570 7_3:-58536189 Msa1112540:CDS
GTCATCCACGATCCAGGTCG+CGG 0.554431 7_3:-58536387 Msa1112540:CDS
CAAACAAATAATAAATCAGT+AGG 0.555872 7_3:+58534833 None:intergenic
TCGCGGTGCTCCTCTTGCTA+AGG 0.557816 7_3:-58536370 Msa1112540:CDS
CTTGGTCAGCCCAAGTGTCA+TGG 0.560137 7_3:-58534733 Msa1112540:three_prime_UTR
ATGATTGGGCAAGTTGCTGG+TGG 0.561494 7_3:-58535284 Msa1112540:CDS
CTTCTGTTTCTGATAACGGA+AGG 0.563357 7_3:+58536332 None:intergenic
TGATGCTCCTCCTGGACAGA+AGG 0.566122 7_3:-58535096 Msa1112540:CDS
CGGAACCTGCTCCCTTACGT+TGG 0.568166 7_3:+58536508 None:intergenic
TCTGATAACGGAAGGGATGA+CGG 0.568851 7_3:+58536340 None:intergenic
GCTGTGATTTGTAATGTTGA+GGG 0.572615 7_3:-58536198 Msa1112540:CDS
TTCTGTTTCTGATAACGGAA+GGG 0.573577 7_3:+58536333 None:intergenic
GAGCACCGCGACCTGGATCG+TGG 0.573801 7_3:+58536382 None:intergenic
GAACGCAACGGTTACCTCAA+AGG 0.574638 7_3:-58536423 Msa1112540:CDS
GTCGAGGGAACGGAAACGGG+CGG 0.575776 7_3:+58536452 None:intergenic
GTTCGCCGAAGTCGAGGGAA+CGG 0.578749 7_3:+58536442 None:intergenic
CTGCTCCCTTACGTTGGGCA+CGG 0.579845 7_3:+58536514 None:intergenic
GAGAAGCCAATGTTGAAGGC+CGG 0.581735 7_3:-58535251 Msa1112540:CDS
TCAGAGTGAAGAGGAACTGT+TGG 0.582492 7_3:-58535211 Msa1112540:CDS
GTCATCCGTGCCCAACGTAA+GGG 0.585900 7_3:-58536519 Msa1112540:CDS
ATGTGTGTGGGATTTGAAAA+CGG 0.586676 7_3:+58536488 None:intergenic
CCTTCAGGAATAGATCTAAG+AGG 0.588316 7_3:+58536222 None:intergenic
ACCGCAGTAAATAAACTGAC+CGG 0.589138 7_3:+58536278 None:intergenic
ATAGCAACACCACGAACCTT+AGG 0.594313 7_3:+58535188 None:intergenic
ACCGGTCAGTTTATTTACTG+CGG 0.597635 7_3:-58536279 Msa1112540:CDS
ACAATCTTCTTGGCACCAGA+TGG 0.597976 7_3:+58535326 None:intergenic
GATTGTGCCAAGTGACTGCA+GGG 0.598947 7_3:-58535309 Msa1112540:CDS
CTCGACTTCGGCGAACGCAA+CGG 0.608500 7_3:-58536435 Msa1112540:CDS
GTTGCGTTCGCCGAAGTCGA+GGG 0.613842 7_3:+58536437 None:intergenic
AAGAGGACTGGTCGTCTTAG+GGG 0.622786 7_3:-58535056 Msa1112540:CDS
CGGAAAGTCACCTTAGCAAG+AGG 0.624941 7_3:+58536360 None:intergenic
TCCCACACACATCACCGCAA+AGG 0.627541 7_3:-58536477 Msa1112540:CDS
GTTGGTGATTACCTCCTCCG+TGG 0.630355 7_3:+58535147 None:intergenic
GCGGCGGCGAGAAATGGAGA+AGG 0.631466 7_3:+58536555 None:intergenic
ATTATGCAGCCATGACACTT+GGG 0.635720 7_3:+58534724 None:intergenic
ACCCCGATAATGATACCTCT+AGG 0.637049 7_3:-58536110 Msa1112540:intron
TAGGCAGTGAAGGTGCAGGA+AGG 0.644559 7_3:+58534852 None:intergenic
CCACCTCTAAAACCAAGCCA+GGG 0.652754 7_3:-58536606 None:intergenic
TTGGTCTCATTGCTGCCAAG+AGG 0.653221 7_3:-58535073 Msa1112540:CDS
TACTGGCATGACCAATATGT+TGG 0.654768 7_3:+58535129 None:intergenic
ACCACAAGTTCAGAGTGAAG+AGG 0.655234 7_3:-58535220 Msa1112540:CDS
AATCCTGTTGAGCATCCCCA+CGG 0.655918 7_3:-58535164 Msa1112540:CDS
CGGCGGCGAGAAATGGAGAA+GGG 0.658640 7_3:+58536556 None:intergenic
ACCTAGAGGTATCATTATCG+GGG 0.665372 7_3:+58536109 None:intergenic
CTTCCGTTATCAGAAACAGA+AGG 0.665450 7_3:-58536331 Msa1112540:CDS
GGAATGAGAAGTTCTAACCC+TGG 0.686215 7_3:+58536589 None:intergenic
GAGGGTCATGTTGGTGACCG+TGG 0.688077 7_3:-58536180 Msa1112540:CDS
AGACCAACCTTCTGTCCAGG+AGG 0.695738 7_3:+58535089 None:intergenic
CCTGTTGAGCATCCCCACGG+AGG 0.744930 7_3:-58535161 Msa1112540:CDS
TGGTGATTACCTCCTCCGTG+GGG 0.779827 7_3:+58535149 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GATTATATTATGATTTATTT+TGG - chr7_3:58535315-58535334 Msa1112540:CDS 10.0%
!!! ATTTATTTTGGAATTAATTT+TGG - chr7_3:58535327-58535346 Msa1112540:CDS 10.0%
!!! TTAAAAATTTATACCTTTTT+TGG - chr7_3:58535767-58535786 Msa1112540:intron 10.0%
!! TTTCGATTAATATTAATTTA+AGG - chr7_3:58535863-58535882 Msa1112540:intron 10.0%
!!! AATATAACACTTTTTTATTA+GGG - chr7_3:58535899-58535918 Msa1112540:intron 10.0%
!!! GATTATATTATGATTTATTT+TGG - chr7_3:58535315-58535334 Msa1112540:CDS 10.0%
!!! ATTTATTTTGGAATTAATTT+TGG - chr7_3:58535327-58535346 Msa1112540:CDS 10.0%
!!! TTAAAAATTTATACCTTTTT+TGG - chr7_3:58535767-58535786 Msa1112540:intron 10.0%
!! TTTCGATTAATATTAATTTA+AGG - chr7_3:58535863-58535882 Msa1112540:intron 10.0%
!!! AATATAACACTTTTTTATTA+GGG - chr7_3:58535899-58535918 Msa1112540:intron 10.0%
!! TTATTTGATGTTATTCTTAA+TGG - chr7_3:58535287-58535306 Msa1112540:CDS 15.0%
!!! TTATATTTTTGGATTGATTT+TGG - chr7_3:58535503-58535522 Msa1112540:intron 15.0%
!!! TATCATTTAAAATCCAAAAA+AGG + chr7_3:58535783-58535802 None:intergenic 15.0%
!!! CAATATAACACTTTTTTATT+AGG - chr7_3:58535898-58535917 Msa1112540:intron 15.0%
!!! ATCATTTTCCTAAAATATTA+TGG - chr7_3:58536413-58536432 Msa1112540:CDS 15.0%
!! TTATTTGATGTTATTCTTAA+TGG - chr7_3:58535287-58535306 Msa1112540:CDS 15.0%
!!! TTATATTTTTGGATTGATTT+TGG - chr7_3:58535503-58535522 Msa1112540:intron 15.0%
!!! TATCATTTAAAATCCAAAAA+AGG + chr7_3:58535783-58535802 None:intergenic 15.0%
!!! CAATATAACACTTTTTTATT+AGG - chr7_3:58535898-58535917 Msa1112540:intron 15.0%
!!! ATCATTTTCCTAAAATATTA+TGG - chr7_3:58536413-58536432 Msa1112540:CDS 15.0%
!! AAGAATAAAAATATACCTAG+AGG + chr7_3:58535234-58535253 None:intergenic 20.0%
!!! AATTAATTTTGGTATTTGAG+TGG - chr7_3:58535338-58535357 Msa1112540:CDS 20.0%
!!! GTATTTTTAGTAGATTGAAT+TGG - chr7_3:58535525-58535544 Msa1112540:intron 20.0%
!! AAATTTGAGTAGTAAATTCA+TGG - chr7_3:58535646-58535665 Msa1112540:intron 20.0%
!!! AAAATACTCTGAAAACTAAT+TGG + chr7_3:58535811-58535830 None:intergenic 20.0%
!! AATCTAAACTGCTTATTTAT+CGG + chr7_3:58536322-58536341 None:intergenic 20.0%
!! AGTTTAACAAGAAACAAAAT+TGG + chr7_3:58536376-58536395 None:intergenic 20.0%
!! CAAACAAATAATAAATCAGT+AGG + chr7_3:58536496-58536515 None:intergenic 20.0%
!!! CTACTGATTTATTATTTGTT+TGG - chr7_3:58536494-58536513 Msa1112540:CDS 20.0%
!! GATTTATTATTTGTTTGGAA+TGG - chr7_3:58536499-58536518 Msa1112540:CDS 20.0%
!!! AAATTGCTTTTATTTACAAC+CGG - chr7_3:58536524-58536543 Msa1112540:CDS 20.0%
!!! TCAAATTTCTTTGAAATTCT+TGG - chr7_3:58536575-58536594 Msa1112540:five_prime_UTR 20.0%
!! AAGAATAAAAATATACCTAG+AGG + chr7_3:58535234-58535253 None:intergenic 20.0%
!!! AATTAATTTTGGTATTTGAG+TGG - chr7_3:58535338-58535357 Msa1112540:CDS 20.0%
!!! GTATTTTTAGTAGATTGAAT+TGG - chr7_3:58535525-58535544 Msa1112540:intron 20.0%
!! AAATTTGAGTAGTAAATTCA+TGG - chr7_3:58535646-58535665 Msa1112540:intron 20.0%
!!! AAAATACTCTGAAAACTAAT+TGG + chr7_3:58535811-58535830 None:intergenic 20.0%
!! AATCTAAACTGCTTATTTAT+CGG + chr7_3:58536322-58536341 None:intergenic 20.0%
!! AGTTTAACAAGAAACAAAAT+TGG + chr7_3:58536376-58536395 None:intergenic 20.0%
!! CAAACAAATAATAAATCAGT+AGG + chr7_3:58536496-58536515 None:intergenic 20.0%
!!! CTACTGATTTATTATTTGTT+TGG - chr7_3:58536494-58536513 Msa1112540:CDS 20.0%
!! GATTTATTATTTGTTTGGAA+TGG - chr7_3:58536499-58536518 Msa1112540:CDS 20.0%
!!! AAATTGCTTTTATTTACAAC+CGG - chr7_3:58536524-58536543 Msa1112540:CDS 20.0%
!!! TCAAATTTCTTTGAAATTCT+TGG - chr7_3:58536575-58536594 Msa1112540:five_prime_UTR 20.0%
! TTCAATAGAAATGTTTGATC+TGG - chr7_3:58535370-58535389 Msa1112540:intron 25.0%
! TCAATAGAAATGTTTGATCT+GGG - chr7_3:58535371-58535390 Msa1112540:intron 25.0%
!! TGAATTGATGTTAGTGTTTT+TGG - chr7_3:58535458-58535477 Msa1112540:intron 25.0%
!! GAATTGATGTTAGTGTTTTT+GGG - chr7_3:58535459-58535478 Msa1112540:intron 25.0%
! TAGCACAATATAAACAAATC+GGG + chr7_3:58535700-58535719 None:intergenic 25.0%
! CTAGCACAATATAAACAAAT+CGG + chr7_3:58535701-58535720 None:intergenic 25.0%
! TTGATTTCAATGCAGAAAAT+TGG - chr7_3:58535725-58535744 Msa1112540:intron 25.0%
! TGATTTCAATGCAGAAAATT+GGG - chr7_3:58535726-58535745 Msa1112540:intron 25.0%
!!! AGGGTTTTGTTTGATTATTT+AGG - chr7_3:58535918-58535937 Msa1112540:intron 25.0%
!! TTTAGGTGTATACTTGATTT+TGG - chr7_3:58535935-58535954 Msa1112540:intron 25.0%
!! CAAAAGCTCCATAATATTTT+AGG + chr7_3:58536424-58536443 None:intergenic 25.0%
! GACACGAATTAATCAATAAA+TGG + chr7_3:58536557-58536576 None:intergenic 25.0%
! TTCAATAGAAATGTTTGATC+TGG - chr7_3:58535370-58535389 Msa1112540:intron 25.0%
! TCAATAGAAATGTTTGATCT+GGG - chr7_3:58535371-58535390 Msa1112540:intron 25.0%
!! TGAATTGATGTTAGTGTTTT+TGG - chr7_3:58535458-58535477 Msa1112540:intron 25.0%
!! GAATTGATGTTAGTGTTTTT+GGG - chr7_3:58535459-58535478 Msa1112540:intron 25.0%
! TAGCACAATATAAACAAATC+GGG + chr7_3:58535700-58535719 None:intergenic 25.0%
! CTAGCACAATATAAACAAAT+CGG + chr7_3:58535701-58535720 None:intergenic 25.0%
! TTGATTTCAATGCAGAAAAT+TGG - chr7_3:58535725-58535744 Msa1112540:intron 25.0%
! TGATTTCAATGCAGAAAATT+GGG - chr7_3:58535726-58535745 Msa1112540:intron 25.0%
!!! AGGGTTTTGTTTGATTATTT+AGG - chr7_3:58535918-58535937 Msa1112540:intron 25.0%
!! TTTAGGTGTATACTTGATTT+TGG - chr7_3:58535935-58535954 Msa1112540:intron 25.0%
!! CAAAAGCTCCATAATATTTT+AGG + chr7_3:58536424-58536443 None:intergenic 25.0%
! GACACGAATTAATCAATAAA+TGG + chr7_3:58536557-58536576 None:intergenic 25.0%
GTTTATTTACTGCGGTAAAA+AGG - chr7_3:58535055-58535074 Msa1112540:CDS 30.0%
!! ATACCTAGAGGTATCATTAT+CGG + chr7_3:58535222-58535241 None:intergenic 30.0%
!!! ATGTTAGTGTTTTTGGGTTA+TGG - chr7_3:58535465-58535484 Msa1112540:intron 30.0%
TAGATTGAATTGGAATTGAG+TGG - chr7_3:58535535-58535554 Msa1112540:intron 30.0%
AGATTGAATTGGAATTGAGT+GGG - chr7_3:58535536-58535555 Msa1112540:intron 30.0%
! ATACTCTGAAAACTAATTGG+AGG + chr7_3:58535808-58535827 None:intergenic 30.0%
TCATAACTGAAGTGAAGTTA+TGG - chr7_3:58535831-58535850 Msa1112540:intron 30.0%
TGAAGTGAAGTTATGGATAT+AGG - chr7_3:58535838-58535857 Msa1112540:intron 30.0%
TTTGGAGAGTAATGTTGAAA+TGG - chr7_3:58535953-58535972 Msa1112540:intron 30.0%
TTGGAGAGTAATGTTGAAAT+GGG - chr7_3:58535954-58535973 Msa1112540:intron 30.0%
!!! TGAAATGGGTTTTGTTATAC+AGG - chr7_3:58535968-58535987 Msa1112540:intron 30.0%
GTTTATTTACTGCGGTAAAA+AGG - chr7_3:58535055-58535074 Msa1112540:CDS 30.0%
!! ATACCTAGAGGTATCATTAT+CGG + chr7_3:58535222-58535241 None:intergenic 30.0%
!!! ATGTTAGTGTTTTTGGGTTA+TGG - chr7_3:58535465-58535484 Msa1112540:intron 30.0%
TAGATTGAATTGGAATTGAG+TGG - chr7_3:58535535-58535554 Msa1112540:intron 30.0%
AGATTGAATTGGAATTGAGT+GGG - chr7_3:58535536-58535555 Msa1112540:intron 30.0%
! ATACTCTGAAAACTAATTGG+AGG + chr7_3:58535808-58535827 None:intergenic 30.0%
TCATAACTGAAGTGAAGTTA+TGG - chr7_3:58535831-58535850 Msa1112540:intron 30.0%
TGAAGTGAAGTTATGGATAT+AGG - chr7_3:58535838-58535857 Msa1112540:intron 30.0%
TTTGGAGAGTAATGTTGAAA+TGG - chr7_3:58535953-58535972 Msa1112540:intron 30.0%
TTGGAGAGTAATGTTGAAAT+GGG - chr7_3:58535954-58535973 Msa1112540:intron 30.0%
!!! TGAAATGGGTTTTGTTATAC+AGG - chr7_3:58535968-58535987 Msa1112540:intron 30.0%
ATGTGTGTGGGATTTGAAAA+CGG + chr7_3:58534841-58534860 None:intergenic 35.0%
!! TTCTGTTTCTGATAACGGAA+GGG + chr7_3:58534996-58535015 None:intergenic 35.0%
! TGCTGTGATTTGTAATGTTG+AGG - chr7_3:58535127-58535146 Msa1112540:CDS 35.0%
! GCTGTGATTTGTAATGTTGA+GGG - chr7_3:58535128-58535147 Msa1112540:CDS 35.0%
!! TACCTAGAGGTATCATTATC+GGG + chr7_3:58535221-58535240 None:intergenic 35.0%
ATCGGGTTCAAAATTCATCT+TGG + chr7_3:58535683-58535702 None:intergenic 35.0%
AATAAATCAGTAGGCAGTGA+AGG + chr7_3:58536487-58536506 None:intergenic 35.0%
ATGTGTGTGGGATTTGAAAA+CGG + chr7_3:58534841-58534860 None:intergenic 35.0%
!! TTCTGTTTCTGATAACGGAA+GGG + chr7_3:58534996-58535015 None:intergenic 35.0%
! TGCTGTGATTTGTAATGTTG+AGG - chr7_3:58535127-58535146 Msa1112540:CDS 35.0%
! GCTGTGATTTGTAATGTTGA+GGG - chr7_3:58535128-58535147 Msa1112540:CDS 35.0%
!! TACCTAGAGGTATCATTATC+GGG + chr7_3:58535221-58535240 None:intergenic 35.0%
ATCGGGTTCAAAATTCATCT+TGG + chr7_3:58535683-58535702 None:intergenic 35.0%
AATAAATCAGTAGGCAGTGA+AGG + chr7_3:58536487-58536506 None:intergenic 35.0%
!! CTTCTGTTTCTGATAACGGA+AGG + chr7_3:58534997-58535016 None:intergenic 40.0%
CTTCCGTTATCAGAAACAGA+AGG - chr7_3:58534995-58535014 Msa1112540:three_prime_UTR 40.0%
!! GCTCCTTCTGTTTCTGATAA+CGG + chr7_3:58535001-58535020 None:intergenic 40.0%
ACCGGTCAGTTTATTTACTG+CGG - chr7_3:58535047-58535066 Msa1112540:CDS 40.0%
ACCGCAGTAAATAAACTGAC+CGG + chr7_3:58535051-58535070 None:intergenic 40.0%
! AAAAAGGCGACTCTTGTTGT+TGG - chr7_3:58535071-58535090 Msa1112540:CDS 40.0%
CCTTCAGGAATAGATCTAAG+AGG + chr7_3:58535107-58535126 None:intergenic 40.0%
CCTCTTAGATCTATTCCTGA+AGG - chr7_3:58535104-58535123 Msa1112540:CDS 40.0%
TTACAAATCACAGCACCTTC+AGG + chr7_3:58535122-58535141 None:intergenic 40.0%
TGTAATGTTGAGGGTCATGT+TGG - chr7_3:58535137-58535156 Msa1112540:CDS 40.0%
! AAGCTCTAGCAAAAACACCA+CGG + chr7_3:58535166-58535185 None:intergenic 40.0%
!! ACCTAGAGGTATCATTATCG+GGG + chr7_3:58535220-58535239 None:intergenic 40.0%
AACTGAGAAGCCAATGTTGA+AGG - chr7_3:58536071-58536090 Msa1112540:intron 40.0%
GAACTTGTGGTAAGCATTAC+CGG + chr7_3:58536097-58536116 None:intergenic 40.0%
GGAGGTAATCACCAACATAT+TGG - chr7_3:58536186-58536205 Msa1112540:CDS 40.0%
TACTGGCATGACCAATATGT+TGG + chr7_3:58536200-58536219 None:intergenic 40.0%
ATCAATAAATGGCGTGTCAC+CGG + chr7_3:58536546-58536565 None:intergenic 40.0%
!! CTTCTGTTTCTGATAACGGA+AGG + chr7_3:58534997-58535016 None:intergenic 40.0%
CTTCCGTTATCAGAAACAGA+AGG - chr7_3:58534995-58535014 Msa1112540:three_prime_UTR 40.0%
!! GCTCCTTCTGTTTCTGATAA+CGG + chr7_3:58535001-58535020 None:intergenic 40.0%
ACCGGTCAGTTTATTTACTG+CGG - chr7_3:58535047-58535066 Msa1112540:CDS 40.0%
ACCGCAGTAAATAAACTGAC+CGG + chr7_3:58535051-58535070 None:intergenic 40.0%
! AAAAAGGCGACTCTTGTTGT+TGG - chr7_3:58535071-58535090 Msa1112540:CDS 40.0%
CCTTCAGGAATAGATCTAAG+AGG + chr7_3:58535107-58535126 None:intergenic 40.0%
CCTCTTAGATCTATTCCTGA+AGG - chr7_3:58535104-58535123 Msa1112540:CDS 40.0%
TTACAAATCACAGCACCTTC+AGG + chr7_3:58535122-58535141 None:intergenic 40.0%
TGTAATGTTGAGGGTCATGT+TGG - chr7_3:58535137-58535156 Msa1112540:CDS 40.0%
! AAGCTCTAGCAAAAACACCA+CGG + chr7_3:58535166-58535185 None:intergenic 40.0%
!! ACCTAGAGGTATCATTATCG+GGG + chr7_3:58535220-58535239 None:intergenic 40.0%
AACTGAGAAGCCAATGTTGA+AGG - chr7_3:58536071-58536090 Msa1112540:intron 40.0%
GAACTTGTGGTAAGCATTAC+CGG + chr7_3:58536097-58536116 None:intergenic 40.0%
GGAGGTAATCACCAACATAT+TGG - chr7_3:58536186-58536205 Msa1112540:CDS 40.0%
TACTGGCATGACCAATATGT+TGG + chr7_3:58536200-58536219 None:intergenic 40.0%
ATCAATAAATGGCGTGTCAC+CGG + chr7_3:58536546-58536565 None:intergenic 40.0%
! GGAATGAGAAGTTCTAACCC+TGG + chr7_3:58534740-58534759 None:intergenic 45.0%
! GATGACACGACCCATTTTAG+CGG + chr7_3:58534793-58534812 None:intergenic 45.0%
!! TCTGATAACGGAAGGGATGA+CGG + chr7_3:58534989-58535008 None:intergenic 45.0%
!! GGTGTTTTTGCTAGAGCTTC+TGG - chr7_3:58535167-58535186 Msa1112540:CDS 45.0%
ACCCCGATAATGATACCTCT+AGG - chr7_3:58535216-58535235 Msa1112540:CDS 45.0%
TACAGGATCAAGCTTCCATC+TGG - chr7_3:58535985-58536004 Msa1112540:intron 45.0%
ACAATCTTCTTGGCACCAGA+TGG + chr7_3:58536003-58536022 None:intergenic 45.0%
GTCACTTGGCACAATCTTCT+TGG + chr7_3:58536013-58536032 None:intergenic 45.0%
ACCACAAGTTCAGAGTGAAG+AGG - chr7_3:58536106-58536125 Msa1112540:intron 45.0%
TCCTCTTCACTCTGAACTTG+TGG + chr7_3:58536110-58536129 None:intergenic 45.0%
TCAGAGTGAAGAGGAACTGT+TGG - chr7_3:58536115-58536134 Msa1112540:CDS 45.0%
ATAGCAACACCACGAACCTT+AGG + chr7_3:58536141-58536160 None:intergenic 45.0%
! GGAATGAGAAGTTCTAACCC+TGG + chr7_3:58534740-58534759 None:intergenic 45.0%
! GATGACACGACCCATTTTAG+CGG + chr7_3:58534793-58534812 None:intergenic 45.0%
!! TCTGATAACGGAAGGGATGA+CGG + chr7_3:58534989-58535008 None:intergenic 45.0%
!! GGTGTTTTTGCTAGAGCTTC+TGG - chr7_3:58535167-58535186 Msa1112540:CDS 45.0%
ACCCCGATAATGATACCTCT+AGG - chr7_3:58535216-58535235 Msa1112540:CDS 45.0%
TACAGGATCAAGCTTCCATC+TGG - chr7_3:58535985-58536004 Msa1112540:intron 45.0%
ACAATCTTCTTGGCACCAGA+TGG + chr7_3:58536003-58536022 None:intergenic 45.0%
GTCACTTGGCACAATCTTCT+TGG + chr7_3:58536013-58536032 None:intergenic 45.0%
ACCACAAGTTCAGAGTGAAG+AGG - chr7_3:58536106-58536125 Msa1112540:intron 45.0%
TCCTCTTCACTCTGAACTTG+TGG + chr7_3:58536110-58536129 None:intergenic 45.0%
TCAGAGTGAAGAGGAACTGT+TGG - chr7_3:58536115-58536134 Msa1112540:CDS 45.0%
ATAGCAACACCACGAACCTT+AGG + chr7_3:58536141-58536160 None:intergenic 45.0%
!!! TTATTATTTGATTATATTTT+TGG - chr7_3:58535492-58535511 Msa1112540:intron 5.0%
!!! TTATTATTTGATTATATTTT+TGG - chr7_3:58535492-58535511 Msa1112540:intron 5.0%
! GAGAAGTTCTAACCCTGGCT+TGG + chr7_3:58534735-58534754 None:intergenic 50.0%
ATGGAGAAGGGTAGAGAGTG+AGG + chr7_3:58534761-58534780 None:intergenic 50.0%
!! ATTTTAGCGGCGGCGAGAAA+TGG + chr7_3:58534780-58534799 None:intergenic 50.0%
ATTTCTCGCCGCCGCTAAAA+TGG - chr7_3:58534779-58534798 Msa1112540:three_prime_UTR 50.0%
TTTCTCGCCGCCGCTAAAAT+GGG - chr7_3:58534780-58534799 Msa1112540:three_prime_UTR 50.0%
GAACGCAACGGTTACCTCAA+AGG - chr7_3:58534903-58534922 Msa1112540:three_prime_UTR 50.0%
CGGAAAGTCACCTTAGCAAG+AGG + chr7_3:58534969-58534988 None:intergenic 50.0%
! GAGCTTTTCGTAGCTGCTGA+GGG - chr7_3:58535017-58535036 Msa1112540:exon 50.0%
GCTGCTGAGGGTTTGTATAC+CGG - chr7_3:58535029-58535048 Msa1112540:CDS 50.0%
AGATTGTGCCAAGTGACTGC+AGG - chr7_3:58536016-58536035 Msa1112540:intron 50.0%
GATTGTGCCAAGTGACTGCA+GGG - chr7_3:58536017-58536036 Msa1112540:intron 50.0%
ACCAGCAACTTGCCCAATCA+TGG + chr7_3:58536043-58536062 None:intergenic 50.0%
ATGATTGGGCAAGTTGCTGG+TGG - chr7_3:58536042-58536061 Msa1112540:intron 50.0%
GAGAAGCCAATGTTGAAGGC+CGG - chr7_3:58536075-58536094 Msa1112540:intron 50.0%
GCATTACCGGCCTTCAACAT+TGG + chr7_3:58536084-58536103 None:intergenic 50.0%
! GAAGAGGAACTGTTGGCCTA+AGG - chr7_3:58536122-58536141 Msa1112540:CDS 50.0%
! AACTGTTGGCCTAAGGTTCG+TGG - chr7_3:58536129-58536148 Msa1112540:CDS 50.0%
AATCCTGTTGAGCATCCCCA+CGG - chr7_3:58536162-58536181 Msa1112540:CDS 50.0%
! TTGGTGATTACCTCCTCCGT+GGG + chr7_3:58536181-58536200 None:intergenic 50.0%
AGCATCACGTCTGACAGTAC+TGG + chr7_3:58536217-58536236 None:intergenic 50.0%
ATGAGACCAACCTTCTGTCC+AGG + chr7_3:58536243-58536262 None:intergenic 50.0%
TTGGTCTCATTGCTGCCAAG+AGG - chr7_3:58536253-58536272 Msa1112540:CDS 50.0%
!! CAAGAGGACTGGTCGTCTTA+GGG - chr7_3:58536269-58536288 Msa1112540:CDS 50.0%
!! AAGAGGACTGGTCGTCTTAG+GGG - chr7_3:58536270-58536289 Msa1112540:CDS 50.0%
! GAGAAGTTCTAACCCTGGCT+TGG + chr7_3:58534735-58534754 None:intergenic 50.0%
ATGGAGAAGGGTAGAGAGTG+AGG + chr7_3:58534761-58534780 None:intergenic 50.0%
!! ATTTTAGCGGCGGCGAGAAA+TGG + chr7_3:58534780-58534799 None:intergenic 50.0%
ATTTCTCGCCGCCGCTAAAA+TGG - chr7_3:58534779-58534798 Msa1112540:three_prime_UTR 50.0%
TTTCTCGCCGCCGCTAAAAT+GGG - chr7_3:58534780-58534799 Msa1112540:three_prime_UTR 50.0%
GAACGCAACGGTTACCTCAA+AGG - chr7_3:58534903-58534922 Msa1112540:three_prime_UTR 50.0%
CGGAAAGTCACCTTAGCAAG+AGG + chr7_3:58534969-58534988 None:intergenic 50.0%
! GAGCTTTTCGTAGCTGCTGA+GGG - chr7_3:58535017-58535036 Msa1112540:exon 50.0%
GCTGCTGAGGGTTTGTATAC+CGG - chr7_3:58535029-58535048 Msa1112540:CDS 50.0%
AGATTGTGCCAAGTGACTGC+AGG - chr7_3:58536016-58536035 Msa1112540:intron 50.0%
GATTGTGCCAAGTGACTGCA+GGG - chr7_3:58536017-58536036 Msa1112540:intron 50.0%
ACCAGCAACTTGCCCAATCA+TGG + chr7_3:58536043-58536062 None:intergenic 50.0%
ATGATTGGGCAAGTTGCTGG+TGG - chr7_3:58536042-58536061 Msa1112540:intron 50.0%
GAGAAGCCAATGTTGAAGGC+CGG - chr7_3:58536075-58536094 Msa1112540:intron 50.0%
GCATTACCGGCCTTCAACAT+TGG + chr7_3:58536084-58536103 None:intergenic 50.0%
! GAAGAGGAACTGTTGGCCTA+AGG - chr7_3:58536122-58536141 Msa1112540:CDS 50.0%
! AACTGTTGGCCTAAGGTTCG+TGG - chr7_3:58536129-58536148 Msa1112540:CDS 50.0%
AATCCTGTTGAGCATCCCCA+CGG - chr7_3:58536162-58536181 Msa1112540:CDS 50.0%
! TTGGTGATTACCTCCTCCGT+GGG + chr7_3:58536181-58536200 None:intergenic 50.0%
AGCATCACGTCTGACAGTAC+TGG + chr7_3:58536217-58536236 None:intergenic 50.0%
ATGAGACCAACCTTCTGTCC+AGG + chr7_3:58536243-58536262 None:intergenic 50.0%
TTGGTCTCATTGCTGCCAAG+AGG - chr7_3:58536253-58536272 Msa1112540:CDS 50.0%
!! CAAGAGGACTGGTCGTCTTA+GGG - chr7_3:58536269-58536288 Msa1112540:CDS 50.0%
!! AAGAGGACTGGTCGTCTTAG+GGG - chr7_3:58536270-58536289 Msa1112540:CDS 50.0%
!! GACACGACCCATTTTAGCGG+CGG + chr7_3:58534790-58534809 None:intergenic 55.0%
TGTCATCCGTGCCCAACGTA+AGG - chr7_3:58534806-58534825 Msa1112540:three_prime_UTR 55.0%
GTCATCCGTGCCCAACGTAA+GGG - chr7_3:58534807-58534826 Msa1112540:three_prime_UTR 55.0%
GGAACCTGCTCCCTTACGTT+GGG + chr7_3:58534820-58534839 None:intergenic 55.0%
TCCCACACACATCACCGCAA+AGG - chr7_3:58534849-58534868 Msa1112540:three_prime_UTR 55.0%
GCCTTTGCGGTGATGTGTGT+GGG + chr7_3:58534853-58534872 None:intergenic 55.0%
GAAGTCGAGGGAACGGAAAC+GGG + chr7_3:58534880-58534899 None:intergenic 55.0%
CGAAGTCGAGGGAACGGAAA+CGG + chr7_3:58534881-58534900 None:intergenic 55.0%
CGTTTCCGTTCCCTCGACTT+CGG - chr7_3:58534879-58534898 Msa1112540:three_prime_UTR 55.0%
CGTCAGTGACGACTCCTTTG+AGG + chr7_3:58534920-58534939 None:intergenic 55.0%
ACTGACGTCATCCACGATCC+AGG - chr7_3:58534933-58534952 Msa1112540:three_prime_UTR 55.0%
! GGAGCTTTTCGTAGCTGCTG+AGG - chr7_3:58535016-58535035 Msa1112540:exon 55.0%
ATCATGGCCCTGCAGTCACT+TGG + chr7_3:58536027-58536046 None:intergenic 55.0%
AGTGACTGCAGGGCCATGAT+TGG - chr7_3:58536027-58536046 Msa1112540:intron 55.0%
GTGACTGCAGGGCCATGATT+GGG - chr7_3:58536028-58536047 Msa1112540:intron 55.0%
GCCATGATTGGGCAAGTTGC+TGG - chr7_3:58536039-58536058 Msa1112540:intron 55.0%
ATTGGGCAAGTTGCTGGTGG+TGG - chr7_3:58536045-58536064 Msa1112540:intron 55.0%
TGGTGATTACCTCCTCCGTG+GGG + chr7_3:58536180-58536199 None:intergenic 55.0%
!! GTTGGTGATTACCTCCTCCG+TGG + chr7_3:58536182-58536201 None:intergenic 55.0%
TGATGCTCCTCCTGGACAGA+AGG - chr7_3:58536230-58536249 Msa1112540:CDS 55.0%
AGACCAACCTTCTGTCCAGG+AGG + chr7_3:58536240-58536259 None:intergenic 55.0%
CTCATTGCTGCCAAGAGGAC+TGG - chr7_3:58536258-58536277 Msa1112540:CDS 55.0%
CCTAAGACGACCAGTCCTCT+TGG + chr7_3:58536271-58536290 None:intergenic 55.0%
!! CCAAGAGGACTGGTCGTCTT+AGG - chr7_3:58536268-58536287 Msa1112540:CDS 55.0%
! TAGGCAGTGAAGGTGCAGGA+AGG + chr7_3:58536477-58536496 None:intergenic 55.0%
! TCAGTAGGCAGTGAAGGTGC+AGG + chr7_3:58536481-58536500 None:intergenic 55.0%
CTTGGTCAGCCCAAGTGTCA+TGG - chr7_3:58536593-58536612 Msa1112540:five_prime_UTR 55.0%
!! GACACGACCCATTTTAGCGG+CGG + chr7_3:58534790-58534809 None:intergenic 55.0%
TGTCATCCGTGCCCAACGTA+AGG - chr7_3:58534806-58534825 Msa1112540:three_prime_UTR 55.0%
GTCATCCGTGCCCAACGTAA+GGG - chr7_3:58534807-58534826 Msa1112540:three_prime_UTR 55.0%
GGAACCTGCTCCCTTACGTT+GGG + chr7_3:58534820-58534839 None:intergenic 55.0%
TCCCACACACATCACCGCAA+AGG - chr7_3:58534849-58534868 Msa1112540:three_prime_UTR 55.0%
GCCTTTGCGGTGATGTGTGT+GGG + chr7_3:58534853-58534872 None:intergenic 55.0%
GAAGTCGAGGGAACGGAAAC+GGG + chr7_3:58534880-58534899 None:intergenic 55.0%
CGAAGTCGAGGGAACGGAAA+CGG + chr7_3:58534881-58534900 None:intergenic 55.0%
CGTTTCCGTTCCCTCGACTT+CGG - chr7_3:58534879-58534898 Msa1112540:three_prime_UTR 55.0%
CGTCAGTGACGACTCCTTTG+AGG + chr7_3:58534920-58534939 None:intergenic 55.0%
ACTGACGTCATCCACGATCC+AGG - chr7_3:58534933-58534952 Msa1112540:three_prime_UTR 55.0%
! GGAGCTTTTCGTAGCTGCTG+AGG - chr7_3:58535016-58535035 Msa1112540:exon 55.0%
ATCATGGCCCTGCAGTCACT+TGG + chr7_3:58536027-58536046 None:intergenic 55.0%
AGTGACTGCAGGGCCATGAT+TGG - chr7_3:58536027-58536046 Msa1112540:intron 55.0%
GTGACTGCAGGGCCATGATT+GGG - chr7_3:58536028-58536047 Msa1112540:intron 55.0%
GCCATGATTGGGCAAGTTGC+TGG - chr7_3:58536039-58536058 Msa1112540:intron 55.0%
ATTGGGCAAGTTGCTGGTGG+TGG - chr7_3:58536045-58536064 Msa1112540:intron 55.0%
TGGTGATTACCTCCTCCGTG+GGG + chr7_3:58536180-58536199 None:intergenic 55.0%
!! GTTGGTGATTACCTCCTCCG+TGG + chr7_3:58536182-58536201 None:intergenic 55.0%
TGATGCTCCTCCTGGACAGA+AGG - chr7_3:58536230-58536249 Msa1112540:CDS 55.0%
AGACCAACCTTCTGTCCAGG+AGG + chr7_3:58536240-58536259 None:intergenic 55.0%
CTCATTGCTGCCAAGAGGAC+TGG - chr7_3:58536258-58536277 Msa1112540:CDS 55.0%
CCTAAGACGACCAGTCCTCT+TGG + chr7_3:58536271-58536290 None:intergenic 55.0%
!! CCAAGAGGACTGGTCGTCTT+AGG - chr7_3:58536268-58536287 Msa1112540:CDS 55.0%
! TAGGCAGTGAAGGTGCAGGA+AGG + chr7_3:58536477-58536496 None:intergenic 55.0%
! TCAGTAGGCAGTGAAGGTGC+AGG + chr7_3:58536481-58536500 None:intergenic 55.0%
CTTGGTCAGCCCAAGTGTCA+TGG - chr7_3:58536593-58536612 Msa1112540:five_prime_UTR 55.0%
CGGCGGCGAGAAATGGAGAA+GGG + chr7_3:58534773-58534792 None:intergenic 60.0%
CTGCTCCCTTACGTTGGGCA+CGG + chr7_3:58534815-58534834 None:intergenic 60.0%
CGGAACCTGCTCCCTTACGT+TGG + chr7_3:58534821-58534840 None:intergenic 60.0%
GGCCTTTGCGGTGATGTGTG+TGG + chr7_3:58534854-58534873 None:intergenic 60.0%
GTTCGCCGAAGTCGAGGGAA+CGG + chr7_3:58534887-58534906 None:intergenic 60.0%
GTTGCGTTCGCCGAAGTCGA+GGG + chr7_3:58534892-58534911 None:intergenic 60.0%
CTCGACTTCGGCGAACGCAA+CGG - chr7_3:58534891-58534910 Msa1112540:three_prime_UTR 60.0%
GTCATCCACGATCCAGGTCG+CGG - chr7_3:58534939-58534958 Msa1112540:three_prime_UTR 60.0%
TCGCGGTGCTCCTCTTGCTA+AGG - chr7_3:58534956-58534975 Msa1112540:three_prime_UTR 60.0%
!! GAGGGTCATGTTGGTGACCG+TGG - chr7_3:58535146-58535165 Msa1112540:CDS 60.0%
GTCAGACGTGATGCTCCTCC+TGG - chr7_3:58536222-58536241 Msa1112540:CDS 60.0%
GCTCCTCCTGGACAGAAGGT+TGG - chr7_3:58536234-58536253 Msa1112540:CDS 60.0%
CGGCGGCGAGAAATGGAGAA+GGG + chr7_3:58534773-58534792 None:intergenic 60.0%
CTGCTCCCTTACGTTGGGCA+CGG + chr7_3:58534815-58534834 None:intergenic 60.0%
CGGAACCTGCTCCCTTACGT+TGG + chr7_3:58534821-58534840 None:intergenic 60.0%
GGCCTTTGCGGTGATGTGTG+TGG + chr7_3:58534854-58534873 None:intergenic 60.0%
GTTCGCCGAAGTCGAGGGAA+CGG + chr7_3:58534887-58534906 None:intergenic 60.0%
GTTGCGTTCGCCGAAGTCGA+GGG + chr7_3:58534892-58534911 None:intergenic 60.0%
CTCGACTTCGGCGAACGCAA+CGG - chr7_3:58534891-58534910 Msa1112540:three_prime_UTR 60.0%
GTCATCCACGATCCAGGTCG+CGG - chr7_3:58534939-58534958 Msa1112540:three_prime_UTR 60.0%
TCGCGGTGCTCCTCTTGCTA+AGG - chr7_3:58534956-58534975 Msa1112540:three_prime_UTR 60.0%
!! GAGGGTCATGTTGGTGACCG+TGG - chr7_3:58535146-58535165 Msa1112540:CDS 60.0%
GTCAGACGTGATGCTCCTCC+TGG - chr7_3:58536222-58536241 Msa1112540:CDS 60.0%
GCTCCTCCTGGACAGAAGGT+TGG - chr7_3:58536234-58536253 Msa1112540:CDS 60.0%
GCGGCGGCGAGAAATGGAGA+AGG + chr7_3:58534774-58534793 None:intergenic 65.0%
CGTGCCCAACGTAAGGGAGC+AGG - chr7_3:58534813-58534832 Msa1112540:three_prime_UTR 65.0%
TCGAGGGAACGGAAACGGGC+GGG + chr7_3:58534876-58534895 None:intergenic 65.0%
GTCGAGGGAACGGAAACGGG+CGG + chr7_3:58534877-58534896 None:intergenic 65.0%
CGTTGCGTTCGCCGAAGTCG+AGG + chr7_3:58534893-58534912 None:intergenic 65.0%
CCTCCGTGGGGATGCTCAAC+AGG + chr7_3:58536168-58536187 None:intergenic 65.0%
CCTGTTGAGCATCCCCACGG+AGG - chr7_3:58536165-58536184 Msa1112540:CDS 65.0%
GTTGAGCATCCCCACGGAGG+AGG - chr7_3:58536168-58536187 Msa1112540:CDS 65.0%
GCGGCGGCGAGAAATGGAGA+AGG + chr7_3:58534774-58534793 None:intergenic 65.0%
CGTGCCCAACGTAAGGGAGC+AGG - chr7_3:58534813-58534832 Msa1112540:three_prime_UTR 65.0%
TCGAGGGAACGGAAACGGGC+GGG + chr7_3:58534876-58534895 None:intergenic 65.0%
GTCGAGGGAACGGAAACGGG+CGG + chr7_3:58534877-58534896 None:intergenic 65.0%
CGTTGCGTTCGCCGAAGTCG+AGG + chr7_3:58534893-58534912 None:intergenic 65.0%
CCTCCGTGGGGATGCTCAAC+AGG + chr7_3:58536168-58536187 None:intergenic 65.0%
CCTGTTGAGCATCCCCACGG+AGG - chr7_3:58536165-58536184 Msa1112540:CDS 65.0%
GTTGAGCATCCCCACGGAGG+AGG - chr7_3:58536168-58536187 Msa1112540:CDS 65.0%
GGAAACGGGCGGGGCCTTTG+CGG + chr7_3:58534866-58534885 None:intergenic 70.0%
CGAGGGAACGGAAACGGGCG+GGG + chr7_3:58534875-58534894 None:intergenic 70.0%
! GAGCACCGCGACCTGGATCG+TGG + chr7_3:58534947-58534966 None:intergenic 70.0%
!! GCAAGAGGAGCACCGCGACC+TGG + chr7_3:58534954-58534973 None:intergenic 70.0%
GGAAACGGGCGGGGCCTTTG+CGG + chr7_3:58534866-58534885 None:intergenic 70.0%
CGAGGGAACGGAAACGGGCG+GGG + chr7_3:58534875-58534894 None:intergenic 70.0%
! GAGCACCGCGACCTGGATCG+TGG + chr7_3:58534947-58534966 None:intergenic 70.0%
!! GCAAGAGGAGCACCGCGACC+TGG + chr7_3:58534954-58534973 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 58534730 58536618 58534730 ID=Msa1112540;Name=Msa1112540
chr7_3 mRNA 58534730 58536618 58534730 ID=Msa1112540-mRNA-1;Parent=Msa1112540;Name=Msa1112540-mRNA-1;_AED=0.33;_eAED=0.33;_QI=68|1|1|1|1|1|2|289|259
chr7_3 exon 58534730 58535358 58534730 ID=Msa1112540-mRNA-1:exon:12889;Parent=Msa1112540-mRNA-1
chr7_3 exon 58536111 58536618 58536111 ID=Msa1112540-mRNA-1:exon:12888;Parent=Msa1112540-mRNA-1
chr7_3 five_prime_UTR 58536551 58536618 58536551 ID=Msa1112540-mRNA-1:five_prime_utr;Parent=Msa1112540-mRNA-1
chr7_3 CDS 58536111 58536550 58536111 ID=Msa1112540-mRNA-1:cds;Parent=Msa1112540-mRNA-1
chr7_3 CDS 58535019 58535358 58535019 ID=Msa1112540-mRNA-1:cds;Parent=Msa1112540-mRNA-1
chr7_3 three_prime_UTR 58534730 58535018 58534730 ID=Msa1112540-mRNA-1:three_prime_utr;Parent=Msa1112540-mRNA-1
Gene Sequence

>Msa1112540

ATGGGTCGTGTCATCCGTGCCCAACGTAAGGGAGCAGGTTCCGTTTTCAAATCCCACACACATCACCGCAAAGGCCCCGCCCGTTTCCGTTCCCTCGACTTCGGCGAACGCAACGGTTACCTCAAAGGAGTCGTCACTGACGTCATCCACGATCCAGGTCGCGGTGCTCCTCTTGCTAAGGTGACTTTCCGTCATCCCTTCCGTTATCAGAAACAGAAGGAGCTTTTCGTAGCTGCTGAGGGTTTGTATACCGGTCAGTTTATTTACTGCGGTAAAAAGGCGACTCTTGTTGTTGGTAATGTTTTGCCTCTTAGATCTATTCCTGAAGGTGCTGTGATTTGTAATGTTGAGGGTCATGTTGGTGACCGTGGTGTTTTTGCTAGAGCTTCTGGTGATTATGCTATTGTTATCAGTCACAACCCCGATAATGATACCTCTAGGATCAAGCTTCCATCTGGTGCCAAGAAGATTGTGCCAAGTGACTGCAGGGCCATGATTGGGCAAGTTGCTGGTGGTGGAAGAACTGAGAAGCCAATGTTGAAGGCCGGTAATGCTTACCACAAGTTCAGAGTGAAGAGGAACTGTTGGCCTAAGGTTCGTGGTGTTGCTATGAATCCTGTTGAGCATCCCCACGGAGGAGGTAATCACCAACATATTGGTCATGCCAGTACTGTCAGACGTGATGCTCCTCCTGGACAGAAGGTTGGTCTCATTGCTGCCAAGAGGACTGGTCGTCTTAGGGGTCAAGCTGCTGCAAGTGCTGCTAAAGCCGATAAATAA
Protein sequence

>Msa1112540

MGRVIRAQRKGAGSVFKSHTHHRKGPARFRSLDFGERNGYLKGVVTDVIHDPGRGAPLAKVTFRHPFRYQKQKELFVAAEGLYTGQFIYCGKKATLVVGNVLPLRSIPEGAVICNVEGHVGDRGVFARASGDYAIVISHNPDNDTSRIKLPSGAKKIVPSDCRAMIGQVAGGGRTEKPMLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLIAAKRTGRLRGQAAASAAKADK*