AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1030020

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1030020 MtrunA17_Chr7g0250541 95.844 385 7 2 1 383 1 378 0.0 715
Msa1030020 MtrunA17_Chr8g0335461 64.031 392 108 10 1 381 1 370 1.54e-113 336
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1030020 AT4G17520.1 45.874 412 139 12 1 381 1 359 9.73e-92 280
Msa1030020 AT4G16830.1 49.123 399 143 12 1 383 1 355 3.55e-62 204
Msa1030020 AT4G16830.2 62.443 221 71 5 164 383 56 265 1.74e-54 181
Msa1030020 AT5G47210.1 46.329 395 160 10 1 381 1 357 4.76e-54 182
Msa1030020 AT4G16830.3 62.443 221 71 5 164 383 136 345 7.28e-54 182
Msa1030020 AT5G47210.3 47.130 331 130 8 1 317 1 300 5.87e-45 157
Msa1030020 AT5G47210.2 43.431 274 114 6 1 261 1 246 4.26e-22 95.9

Find 189 sgRNAs with CRISPR-Local

Find 322 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TACTGAAATCTTTGCTAAAT+TGG 0.161046 7_1:+63807909 Msa1030020:CDS
ACCGCGTCCTCCTTCATTTC+TGG 0.193263 7_1:-63806481 None:intergenic
AAAATGTCAAACGCGATAAA+AGG 0.219849 7_1:-63809028 None:intergenic
GGAAAAGAACTATTACTAAT+TGG 0.258411 7_1:+63808921 Msa1030020:three_prime_UTR
GAATGAAGATGAAAAGAATT+TGG 0.259146 7_1:+63807109 Msa1030020:CDS
TCAACAAAGAAATACCTTCT+TGG 0.271936 7_1:-63808093 None:intergenic
AAGGTGCTGGAAGGGGTAAC+TGG 0.292242 7_1:+63806929 Msa1030020:CDS
ATGGTTTAAAATGTAAATTT+AGG 0.296329 7_1:+63808965 Msa1030020:three_prime_UTR
ATAACTCAGGTGGGCGCGGC+AGG 0.304314 7_1:+63808694 Msa1030020:CDS
GTGGCGTTCAAATGTTCTTC+GGG 0.315882 7_1:-63806778 None:intergenic
AAAATCCAACGTTGGAGATT+AGG 0.323535 7_1:+63804889 Msa1030020:five_prime_UTR
CAAACGCGATAAAAGGATAA+AGG 0.330249 7_1:-63809021 None:intergenic
CGTGGAGGTGACCGCGGATT+TGG 0.332778 7_1:+63806549 Msa1030020:CDS
CGGACATTTACCTTGTCTTC+AGG 0.339881 7_1:-63807212 None:intergenic
GGACGCGGTGGTCGTGGATT+TGG 0.345496 7_1:+63806495 Msa1030020:CDS
GGTGGGCGCGGCAGGGGACG+TGG 0.346207 7_1:+63808702 Msa1030020:CDS
CGAGGAGGTGACCGTGGGTT+TGG 0.347074 7_1:+63806522 Msa1030020:CDS
GCAGGAGGGGTAGGCTTAGA+AGG 0.355114 7_1:-63805287 None:intergenic
GACAATTCGTTCCCTGCCTC+TGG 0.379230 7_1:+63806618 Msa1030020:CDS
GAAAGGTGCTGTCAAGGAAC+AGG 0.384698 7_1:+63805238 Msa1030020:CDS
GGTCGTGGAGGTCGTGGTTT+CGG 0.384827 7_1:+63806576 Msa1030020:CDS
AAGTTTAACACACGAGCGTC+AGG 0.385303 7_1:-63805066 None:intergenic
TGTGGCGTTCAAATGTTCTT+CGG 0.385315 7_1:-63806779 None:intergenic
GAAAGTCATCACAACATTCA+TGG 0.386632 7_1:-63809399 None:intergenic
GATAGAGATCGGAGAGAGAA+GGG 0.395916 7_1:-63805001 None:intergenic
AACTCAGGTGGGCGCGGCAG+GGG 0.400573 7_1:+63808696 Msa1030020:CDS
AATGAAGATGAAAAGAATTT+GGG 0.402155 7_1:+63807110 Msa1030020:CDS
GGCAACAACGCAGGCTTGTT+AGG 0.403213 7_1:-63805266 None:intergenic
CTCTGGAGCCCCTGAAAACC+AGG 0.412435 7_1:+63806635 Msa1030020:CDS
CGCGGATTTGGTGGTGGTCG+TGG 0.419320 7_1:+63806561 Msa1030020:CDS
ATTGTCTTTCTTGCACGATA+AGG 0.419547 7_1:-63807887 None:intergenic
CCCGGGCATTTCCCTACCTT+GGG 0.419782 7_1:+63808819 Msa1030020:CDS
TGTGGGGAAAATAAGTTAAA+TGG 0.420875 7_1:+63809169 Msa1030020:three_prime_UTR
CGCCACAGTGGCACTGGGCG+AGG 0.422652 7_1:+63806795 Msa1030020:CDS
TTTGAACGCCACAGTGGCAC+TGG 0.427150 7_1:+63806789 Msa1030020:CDS
ACCAATCCATTTGATTTGCT+TGG 0.429081 7_1:+63805140 Msa1030020:CDS
TGCCAATGAAGCTGAAGAAA+AGG 0.431523 7_1:+63807187 Msa1030020:CDS
TCCCGGGCATTTCCCTACCT+TGG 0.433639 7_1:+63808818 Msa1030020:CDS
TACCAAGTGTTGGTAGAATC+AGG 0.436570 7_1:+63809270 Msa1030020:three_prime_UTR
TAGTGGGATTCTCCTTCAGC+TGG 0.436928 7_1:-63808672 None:intergenic
TTCTCTCTCTCATTGCGGCT+AGG 0.437746 7_1:+63804957 Msa1030020:five_prime_UTR
GACCTATCTCCTTCTTCAAC+AGG 0.439208 7_1:-63806660 None:intergenic
TCTCTCTCTCATTGCGGCTA+GGG 0.441088 7_1:+63804958 Msa1030020:five_prime_UTR
AGATAGAGATCGGAGAGAGA+AGG 0.441274 7_1:-63805002 None:intergenic
GCAACATCAGTTTCAGCTGC+AGG 0.441395 7_1:-63807143 None:intergenic
TTTGTTCTAGGGAGCTGATA+AGG 0.443719 7_1:+63808034 Msa1030020:intron
CATTCTATTAAAAGTGTTGT+GGG 0.446461 7_1:+63809152 Msa1030020:three_prime_UTR
TGCTGTGGTTGGTATAATGT+GGG 0.448191 7_1:+63809206 Msa1030020:three_prime_UTR
GAAGGAGGACGCGGTGGTCG+TGG 0.449410 7_1:+63806489 Msa1030020:CDS
GGCAGGGGACGTGGTGGCCG+TGG 0.451352 7_1:+63808711 Msa1030020:CDS
GACCGTGGGTTTGGTGGACG+TGG 0.453802 7_1:+63806531 Msa1030020:CDS
TAAGCCTACCCCTCCTGCTC+AGG 0.454092 7_1:+63805292 Msa1030020:CDS
GATTTCAAGCGTGAAGGTGC+TGG 0.455572 7_1:+63806916 Msa1030020:CDS
AACCATAAAATAAAATTAGC+AGG 0.456842 7_1:-63808948 None:intergenic
AAACGCGATAAAAGGATAAA+GGG 0.457429 7_1:-63809020 None:intergenic
ACAGCACCTTTCTTAGCAGC+AGG 0.463975 7_1:-63805227 None:intergenic
GGTACACGAGGAGGAGGAGG+AGG 0.464562 7_1:+63808732 Msa1030020:CDS
TCTAAAGACTGAAGAGAGAA+AGG 0.467642 7_1:+63807834 Msa1030020:CDS
GGGCGCGGCAGGGGACGTGG+TGG 0.473954 7_1:+63808705 Msa1030020:CDS
TTGAAATTCTCTGCTGTGGT+TGG 0.480508 7_1:+63809195 Msa1030020:three_prime_UTR
TAGGACAGATATGCGCGAAA+AGG 0.481183 7_1:-63808854 None:intergenic
CACTATAACTCAGGTGGGCG+CGG 0.482966 7_1:+63808690 Msa1030020:CDS
AGGTGCTGGAAGGGGTAACT+GGG 0.486716 7_1:+63806930 Msa1030020:CDS
AGGACAGATATGCGCGAAAA+GGG 0.488257 7_1:-63808853 None:intergenic
GGCCGTGGTACACGAGGAGG+AGG 0.488513 7_1:+63808726 Msa1030020:CDS
GTGAGGGAGTCCAGAAATGA+AGG 0.488997 7_1:+63806471 Msa1030020:intron
CGTGGTACACGAGGAGGAGG+AGG 0.493384 7_1:+63808729 Msa1030020:CDS
GCTCCATCCATTGAAGATCC+CGG 0.493448 7_1:+63808801 Msa1030020:CDS
GATAAAAGGATAAAGGGAAA+TGG 0.493647 7_1:-63809014 None:intergenic
GGTGGTGGTCGTGGAGGTCG+TGG 0.494148 7_1:+63806570 Msa1030020:CDS
CTGCTGTGGTTGGTATAATG+TGG 0.498774 7_1:+63809205 Msa1030020:three_prime_UTR
CGCGGTGGTCGTGGATTTGG+TGG 0.500708 7_1:+63806498 Msa1030020:CDS
GCTCCTCCTGCTGCTAAGAA+AGG 0.502941 7_1:+63805221 Msa1030020:CDS
TCATCACCAAGCAAATCAAA+TGG 0.503221 7_1:-63805146 None:intergenic
GAAATGCCCGGGATCTTCAA+TGG 0.504140 7_1:-63808808 None:intergenic
CTCCTTCTTCAACAGGACCC+TGG 0.505621 7_1:-63806653 None:intergenic
CGAGCGTCAGGGTTGAAACT+AGG 0.505698 7_1:-63805054 None:intergenic
GCATTCTATTAAAAGTGTTG+TGG 0.509110 7_1:+63809151 Msa1030020:three_prime_UTR
CTCCATCCATTGAAGATCCC+GGG 0.514613 7_1:+63808802 Msa1030020:CDS
ACCAAGCAAATCAAATGGAT+TGG 0.515642 7_1:-63805141 None:intergenic
CAAGGAAGAGAAAGCCAAGA+AGG 0.520620 7_1:+63808079 Msa1030020:CDS
GGAGGTGACCGTGGGTTTGG+TGG 0.523532 7_1:+63806525 Msa1030020:CDS
TTCACTTGGCACCCAAGGTA+GGG 0.526649 7_1:-63808830 None:intergenic
TGTTGTTTCAAAGAAGAAGA+TGG 0.527109 7_1:+63805112 Msa1030020:exon
AGGGCTATCCTTGTTCCCTT+CGG 0.527296 7_1:-63807165 None:intergenic
TCAGCAACGATGAGCTGAGA+AGG 0.527576 7_1:-63805179 None:intergenic
AACCAGGGTCCTGTTGAAGA+AGG 0.528755 7_1:+63806651 Msa1030020:CDS
GTTCACTTGGCACCCAAGGT+AGG 0.529838 7_1:-63808831 None:intergenic
CCAGCCTGAGCAGGAGGGGT+AGG 0.531423 7_1:-63805296 None:intergenic
TTTCTTCAGCTTCATTGGCA+GGG 0.532201 7_1:-63807184 None:intergenic
CAAGCGTGAAGGTGCTGGAA+GGG 0.532787 7_1:+63806921 Msa1030020:CDS
CTTGCACGATAAGGCCTGCA+TGG 0.533336 7_1:-63807878 None:intergenic
GGAGGTGACCGCGGATTTGG+TGG 0.534801 7_1:+63806552 Msa1030020:CDS
GGAGGAGGAGGAGGTTTCCG+TGG 0.535610 7_1:+63808756 Msa1030020:CDS
ACCCAAGGTAGGGAAATGCC+CGG 0.536594 7_1:-63808820 None:intergenic
GTGGTTGAAATTCTCTGCTG+TGG 0.538844 7_1:+63809191 Msa1030020:three_prime_UTR
CATTGCTGTACGAATTTCCA+CGG 0.539202 7_1:-63808773 None:intergenic
CAAATCAAATGGATTGGTAG+TGG 0.541449 7_1:-63805135 None:intergenic
GGAGGAATATGAGAAAGTGC+TGG 0.543378 7_1:+63807786 Msa1030020:CDS
GGTTTCAACAATGGTGATGC+TGG 0.543510 7_1:+63806741 Msa1030020:CDS
AGTAACTAACCAGCCTGAGC+AGG 0.543544 7_1:-63805305 None:intergenic
TTTCAGGGGCTCCAGAGGCA+GGG 0.547403 7_1:-63806629 None:intergenic
TGCTAAGAAAGGTGCTGTCA+AGG 0.548413 7_1:+63805232 Msa1030020:CDS
CCTACCCCTCCTGCTCAGGC+TGG 0.548576 7_1:+63805296 Msa1030020:CDS
GGTGACCGCGGATTTGGTGG+TGG 0.550256 7_1:+63806555 Msa1030020:CDS
TGCCCGGGATCTTCAATGGA+TGG 0.552833 7_1:-63808804 None:intergenic
AACTAACCAGCCTGAGCAGG+AGG 0.555781 7_1:-63805302 None:intergenic
GCCACAGTGGCACTGGGCGA+GGG 0.557182 7_1:+63806796 Msa1030020:CDS
ATGCGCGAAAAGGGTTCACT+TGG 0.557544 7_1:-63808844 None:intergenic
TGATGTTGCCGAAGGGAACA+AGG 0.558851 7_1:+63807157 Msa1030020:CDS
AAGCGTGAAGGTGCTGGAAG+GGG 0.559364 7_1:+63806922 Msa1030020:CDS
GGAGAATCCCACTATAACTC+AGG 0.564061 7_1:+63808681 Msa1030020:CDS
GGATCTTCAATGGATGGAGC+AGG 0.564280 7_1:-63808798 None:intergenic
GGTGGACGAGGAGGTGACCG+TGG 0.565956 7_1:+63806516 Msa1030020:CDS
CGTGGTGGCCGTGGTACACG+AGG 0.566001 7_1:+63808720 Msa1030020:CDS
AAGGGTTCACTTGGCACCCA+AGG 0.569458 7_1:-63808835 None:intergenic
CTAACCAGCCTGAGCAGGAG+GGG 0.570530 7_1:-63805300 None:intergenic
TGGTTATTAGGAAATGACTC+TGG 0.572820 7_1:+63807765 Msa1030020:intron
GGCAACCTAATCTCCAACGT+TGG 0.574091 7_1:-63804894 None:intergenic
GGTCGTGGATTTGGTGGACG+AGG 0.574276 7_1:+63806504 Msa1030020:CDS
AATGGTGATGCTGGTGAAGA+GGG 0.574768 7_1:+63806750 Msa1030020:CDS
TCCAGAAATGAAGGAGGACG+CGG 0.577100 7_1:+63806480 Msa1030020:CDS
TGTCATCATTTGAGTAGTCA+CGG 0.582804 7_1:-63806599 None:intergenic
TCCTCAGAAAGACGTAGCTA+TGG 0.583882 7_1:+63806681 Msa1030020:CDS
GAGTTTCTGAAGCCAGCTGA+AGG 0.586502 7_1:+63808660 Msa1030020:CDS
ATAAAGGGAAATGGCTGCAA+GGG 0.587652 7_1:-63809005 None:intergenic
TTGAACGCCACAGTGGCACT+GGG 0.588094 7_1:+63806790 Msa1030020:CDS
GTCCTGTTGAAGAAGGAGAT+AGG 0.590241 7_1:+63806658 Msa1030020:CDS
TCAAGCGTGAAGGTGCTGGA+AGG 0.590971 7_1:+63806920 Msa1030020:CDS
CTATCTTCTCCTTCGTACGA+TGG 0.593032 7_1:+63805019 Msa1030020:five_prime_UTR
ACGAAGGAGAAGATAGAGAT+CGG 0.593463 7_1:-63805012 None:intergenic
CCCAAGGTAGGGAAATGCCC+GGG 0.593676 7_1:-63808819 None:intergenic
TCCACGACGACCTCCGCGGT+AGG 0.597333 7_1:-63806718 None:intergenic
TCAGAAAGACGTAGCTATGG+TGG 0.597415 7_1:+63806684 Msa1030020:CDS
AGTGCTGGAAGAGAAAAGAA+AGG 0.598692 7_1:+63807801 Msa1030020:CDS
TGGCGTTCAAATGTTCTTCG+GGG 0.599479 7_1:-63806777 None:intergenic
GATAAAGGGAAATGGCTGCA+AGG 0.601288 7_1:-63809006 None:intergenic
GAATCCCACTATAACTCAGG+TGG 0.602838 7_1:+63808684 Msa1030020:CDS
CAATGGTGATGCTGGTGAAG+AGG 0.603465 7_1:+63806749 Msa1030020:CDS
CTCCTCCTCCTCGTGTACCA+CGG 0.603887 7_1:-63808728 None:intergenic
GTGGACGAGGAGGTGACCGT+GGG 0.604172 7_1:+63806517 Msa1030020:CDS
CCCTACCGCGGAGGTCGTCG+TGG 0.605182 7_1:+63806717 Msa1030020:CDS
CTCCACGTCCACCAAACCCA+CGG 0.606495 7_1:-63806533 None:intergenic
GGCTTAGAAGGCAACAACGC+AGG 0.609027 7_1:-63805275 None:intergenic
AGCCTGATTCTACCAACACT+TGG 0.610029 7_1:-63809272 None:intergenic
CAGCAACGATGAGCTGAGAA+GGG 0.614728 7_1:-63805178 None:intergenic
CGTGGGTTTGGTGGACGTGG+AGG 0.619035 7_1:+63806534 Msa1030020:CDS
AGAAAAGGAGCCTGAAGACA+AGG 0.621218 7_1:+63807202 Msa1030020:CDS
TAAAGCATTTGAAACCATGC+AGG 0.622156 7_1:+63807864 Msa1030020:CDS
CGTCGTGGAGGTTTCAACAA+TGG 0.622285 7_1:+63806732 Msa1030020:CDS
CGTGGATTTGGTGGACGAGG+AGG 0.623293 7_1:+63806507 Msa1030020:CDS
GCACCTTTCTTAGCAGCAGG+AGG 0.627026 7_1:-63805224 None:intergenic
GGTGGACGTGGAGGTGACCG+CGG 0.632941 7_1:+63806543 Msa1030020:CDS
TCTCTTTCTCTCTCTCATTG+CGG 0.633265 7_1:+63804952 Msa1030020:five_prime_UTR
CTGAAACTGATGTTGCCGAA+GGG 0.636057 7_1:+63807150 Msa1030020:CDS
AAAGGTGCTGTCAAGGAACA+GGG 0.636405 7_1:+63805239 Msa1030020:CDS
AGTTTAACACACGAGCGTCA+GGG 0.638165 7_1:-63805065 None:intergenic
TTATTAGGAAATGACTCTGG+AGG 0.640664 7_1:+63807768 Msa1030020:intron
AGGGAGTCCAGAAATGAAGG+AGG 0.644058 7_1:+63806474 Msa1030020:CDS
ACTAACCAGCCTGAGCAGGA+GGG 0.644635 7_1:-63805301 None:intergenic
AAATAAATAAAATCCAACGT+TGG 0.648552 7_1:+63804881 Msa1030020:five_prime_UTR
ACCATAGCTACGTCTTTCTG+AGG 0.648642 7_1:-63806682 None:intergenic
ACCCTCGCCCAGTGCCACTG+TGG 0.651721 7_1:-63806797 None:intergenic
CACGACCACCACCAAATCCG+CGG 0.653393 7_1:-63806560 None:intergenic
AATCCCACTATAACTCAGGT+GGG 0.655235 7_1:+63808685 Msa1030020:CDS
GCTGAAACTGATGTTGCCGA+AGG 0.656153 7_1:+63807149 Msa1030020:CDS
TACCGCGGAGGTCGTCGTGG+AGG 0.657139 7_1:+63806720 Msa1030020:CDS
TCTGGAGCCCCTGAAAACCA+GGG 0.658814 7_1:+63806636 Msa1030020:CDS
AGAAACGATTTCAAGCGTGA+AGG 0.659209 7_1:+63806910 Msa1030020:intron
GGATTTGGTGGTGGTCGTGG+AGG 0.659837 7_1:+63806564 Msa1030020:CDS
TTTCGGGGAAATGGTTGCGG+GGG 0.660751 7_1:+63809049 Msa1030020:three_prime_UTR
ATTCTATTAAAAGTGTTGTG+GGG 0.661064 7_1:+63809153 Msa1030020:three_prime_UTR
AGAAATGAAGGAGGACGCGG+TGG 0.665174 7_1:+63806483 Msa1030020:CDS
GCGCAAAGAGGCTTATGACA+AGG 0.666794 7_1:+63808061 Msa1030020:CDS
GGGGAAAATAAGTTAAATGG+TGG 0.667733 7_1:+63809172 Msa1030020:three_prime_UTR
GCTGTGGTTGGTATAATGTG+GGG 0.668701 7_1:+63809207 Msa1030020:three_prime_UTR
GGTGCTGGAAGGGGTAACTG+GGG 0.673151 7_1:+63806931 Msa1030020:CDS
CCACGAGGTCCCTACCGCGG+AGG 0.677303 7_1:+63806708 Msa1030020:CDS
TGATAAGGATAAGCGCAAAG+AGG 0.681220 7_1:+63808049 Msa1030020:CDS
TTTGCTTGGTGATGACGCTG+AGG 0.688473 7_1:+63805154 Msa1030020:CDS
GGACCACGAGGTCCCTACCG+CGG 0.694021 7_1:+63806705 Msa1030020:CDS
GGTGGCCGTGGTACACGAGG+AGG 0.702691 7_1:+63808723 Msa1030020:CDS
AACTCTTTAAGCGAACACAT+AGG 0.703589 7_1:+63804854 None:intergenic
TGAAGTGAGAGAGAAATGCA+CGG 0.714734 7_1:-63804915 None:intergenic
GCATAGTTACCATCGTACGA+AGG 0.715688 7_1:-63805028 None:intergenic
CGTAGCTATGGTGGACCACG+AGG 0.724280 7_1:+63806693 Msa1030020:CDS
AACCTCCACGACGACCTCCG+CGG 0.738924 7_1:-63806722 None:intergenic
AGAACATTTGAACGCCACAG+TGG 0.751248 7_1:+63806783 Msa1030020:CDS
ACAGCAAAGACAATAACACG+CGG 0.802882 7_1:-63805092 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ACAAAATAAATTCAAAATTA+TGG - chr7_1:63807350-63807369 None:intergenic 10.0%
!!! ATGATTTTTATTTTACTAAT+TGG + chr7_1:63808604-63808623 Msa1030020:intron 10.0%
!!! AATTGTAAATAATCTGTTTT+AGG + chr7_1:63805849-63805868 Msa1030020:intron 15.0%
!! AAGATAAAATAACAATGAAT+TGG + chr7_1:63805957-63805976 Msa1030020:intron 15.0%
!! TTTGTTTACATGTTTATTAT+AGG + chr7_1:63807003-63807022 Msa1030020:intron 15.0%
!!! AATTTTGAATTTATTTTGTC+TGG + chr7_1:63807351-63807370 Msa1030020:intron 15.0%
!!! TTCTTCTGATTTAATTTATT+TGG + chr7_1:63807703-63807722 Msa1030020:intron 15.0%
!!! ATGGTTTAAAATGTAAATTT+AGG + chr7_1:63808965-63808984 Msa1030020:three_prime_UTR 15.0%
!!! ACGTTGGATTTTATTTATTT+GGG - chr7_1:63804881-63804900 None:intergenic 20.0%
!!! AACGTTGGATTTTATTTATT+TGG - chr7_1:63804882-63804901 None:intergenic 20.0%
!! AAATAAATAAAATCCAACGT+TGG + chr7_1:63804881-63804900 Msa1030020:five_prime_UTR 20.0%
!! TAATATAATATCAGAATCCA+CGG - chr7_1:63805339-63805358 None:intergenic 20.0%
!! TGGATTCTGATATTATATTA+GGG + chr7_1:63805339-63805358 Msa1030020:intron 20.0%
!! TAGGTCATTTATAATAAATC+TGG + chr7_1:63805503-63805522 Msa1030020:intron 20.0%
!!! AAAGAACCTTGTTATATAAA+TGG - chr7_1:63806357-63806376 None:intergenic 20.0%
!! AAACAAATCATATCATCATA+TGG - chr7_1:63806835-63806854 None:intergenic 20.0%
!!! TTTTCATATTTATTTGCTTG+TGG + chr7_1:63807052-63807071 Msa1030020:intron 20.0%
!! AATGAAGATGAAAAGAATTT+GGG + chr7_1:63807110-63807129 Msa1030020:CDS 20.0%
!!! CTATTGTATAACTATTGATT+AGG - chr7_1:63807963-63807982 None:intergenic 20.0%
!! CAATAGTTATTTATGATGTA+TGG + chr7_1:63807977-63807996 Msa1030020:intron 20.0%
!! TTATACATACAAAGTAACAA+GGG - chr7_1:63808128-63808147 None:intergenic 20.0%
!!! AGGTAAACCATAATTTTTTT+TGG + chr7_1:63808454-63808473 Msa1030020:intron 20.0%
!!! AAAGCATCCAAAAAAAATTA+TGG - chr7_1:63808464-63808483 None:intergenic 20.0%
!! AACTATCAAAAATCATACAA+TGG - chr7_1:63808559-63808578 None:intergenic 20.0%
!!! TGTATGATTTTTGATAGTTT+TGG + chr7_1:63808560-63808579 Msa1030020:intron 20.0%
!!! GTTTTGGAATGTAATTTTTT+TGG + chr7_1:63808576-63808595 Msa1030020:intron 20.0%
!!! TGGTTTTTCTTTGATTTTAA+TGG + chr7_1:63808887-63808906 Msa1030020:three_prime_UTR 20.0%
!!! TTCCTGCTAATTTTATTTTA+TGG + chr7_1:63808946-63808965 Msa1030020:three_prime_UTR 20.0%
!! AACCATAAAATAAAATTAGC+AGG - chr7_1:63808951-63808970 None:intergenic 20.0%
! GTGGATTCTGATATTATATT+AGG + chr7_1:63805338-63805357 Msa1030020:intron 25.0%
!!! TGAATCTTTTGATTTGTTGT+TGG + chr7_1:63805419-63805438 Msa1030020:intron 25.0%
!!! TCTATCTTTGATGTTTTTGT+AGG + chr7_1:63805484-63805503 Msa1030020:intron 25.0%
! CTACAAGTTTAGACAATAAT+TGG + chr7_1:63805653-63805672 Msa1030020:intron 25.0%
!! TATGAAGTCATAATTTTCTG+TGG + chr7_1:63806143-63806162 Msa1030020:intron 25.0%
! GTTGTTAAATACAATTTCGA+TGG + chr7_1:63806198-63806217 Msa1030020:intron 25.0%
! TGTTGTCCATTTATATAACA+AGG + chr7_1:63806348-63806367 Msa1030020:intron 25.0%
!!! ATGTTTTATTTTGACAGTGA+GGG + chr7_1:63806455-63806474 Msa1030020:intron 25.0%
! TTGTGGTTTATAATTTACTC+AGG + chr7_1:63807069-63807088 Msa1030020:intron 25.0%
! TGTGGTTTATAATTTACTCA+GGG + chr7_1:63807070-63807089 Msa1030020:intron 25.0%
! GAATGAAGATGAAAAGAATT+TGG + chr7_1:63807109-63807128 Msa1030020:CDS 25.0%
! TACTGAAATCTTTGCTAAAT+TGG + chr7_1:63807909-63807928 Msa1030020:CDS 25.0%
! GTTATACATACAAAGTAACA+AGG - chr7_1:63808129-63808148 None:intergenic 25.0%
! TTGTATGTATAACAACTTCA+TGG + chr7_1:63808136-63808155 Msa1030020:intron 25.0%
! AAACGAGTAAAAAAGAATCA+TGG - chr7_1:63808346-63808365 None:intergenic 25.0%
! GAAAAACCAAAACTGAAAAT+AGG - chr7_1:63808876-63808895 None:intergenic 25.0%
!!! ATTTTAATGGAACTAAAAGC+AGG + chr7_1:63808900-63808919 Msa1030020:three_prime_UTR 25.0%
! GGAAAAGAACTATTACTAAT+TGG + chr7_1:63808921-63808940 Msa1030020:three_prime_UTR 25.0%
!!! CATTCTATTAAAAGTGTTGT+GGG + chr7_1:63809152-63809171 Msa1030020:three_prime_UTR 25.0%
!!! ATTCTATTAAAAGTGTTGTG+GGG + chr7_1:63809153-63809172 Msa1030020:three_prime_UTR 25.0%
!! TGTTGTTTCAAAGAAGAAGA+TGG + chr7_1:63805112-63805131 Msa1030020:exon 30.0%
TCATAGTCAATAAGCATGTT+TGG - chr7_1:63806128-63806147 None:intergenic 30.0%
!!! GTTGGTTTCTTACTTTTTGT+TGG + chr7_1:63806172-63806191 Msa1030020:intron 30.0%
AAACACAAATTTCAACTGAC+TGG - chr7_1:63806272-63806291 None:intergenic 30.0%
!!! ATGCTGTACTGTTTTTTGAA+TGG + chr7_1:63806379-63806398 Msa1030020:intron 30.0%
!!! GATGTTTTATTTTGACAGTG+AGG + chr7_1:63806454-63806473 Msa1030020:intron 30.0%
CAAATAATCGCATGATTGTT+TGG - chr7_1:63807298-63807317 None:intergenic 30.0%
AACTTTCAGACACTTGAAAA+AGG - chr7_1:63807546-63807565 None:intergenic 30.0%
! ACTTAAGCATTGCATATCTT+TGG + chr7_1:63807585-63807604 Msa1030020:intron 30.0%
!! TAACCTTGTTGTTTCTTATG+AGG + chr7_1:63807608-63807627 Msa1030020:intron 30.0%
! AAATCAGAAGAAAGTACGAT+TGG - chr7_1:63807695-63807714 None:intergenic 30.0%
TCAACAAAGAAATACCTTCT+TGG - chr7_1:63808096-63808115 None:intergenic 30.0%
AAAACACCATTGTTCCATAT+AGG + chr7_1:63808231-63808250 Msa1030020:intron 30.0%
AAACACCATTGTTCCATATA+GGG + chr7_1:63808232-63808251 Msa1030020:intron 30.0%
GTGCTTGCTTAATTATTATC+TGG + chr7_1:63808501-63808520 Msa1030020:intron 30.0%
TAATTATTATCTGGCATCTC+TGG + chr7_1:63808510-63808529 Msa1030020:intron 30.0%
! ATCTGTCCTATTTTCAGTTT+TGG + chr7_1:63808867-63808886 Msa1030020:three_prime_UTR 30.0%
GATAAAAGGATAAAGGGAAA+TGG - chr7_1:63809017-63809036 None:intergenic 30.0%
AAACGCGATAAAAGGATAAA+GGG - chr7_1:63809023-63809042 None:intergenic 30.0%
AAAATGTCAAACGCGATAAA+AGG - chr7_1:63809031-63809050 None:intergenic 30.0%
! TTATCGCGTTTGACATTTTT+CGG + chr7_1:63809032-63809051 Msa1030020:three_prime_UTR 30.0%
!! GCATTCTATTAAAAGTGTTG+TGG + chr7_1:63809151-63809170 Msa1030020:three_prime_UTR 30.0%
TGTGGGGAAAATAAGTTAAA+TGG + chr7_1:63809169-63809188 Msa1030020:three_prime_UTR 30.0%
AAAATCCAACGTTGGAGATT+AGG + chr7_1:63804889-63804908 Msa1030020:five_prime_UTR 35.0%
!! CAAATCAAATGGATTGGTAG+TGG - chr7_1:63805138-63805157 None:intergenic 35.0%
!! ACCAATCCATTTGATTTGCT+TGG + chr7_1:63805140-63805159 Msa1030020:CDS 35.0%
ACCAAGCAAATCAAATGGAT+TGG - chr7_1:63805144-63805163 None:intergenic 35.0%
TCATCACCAAGCAAATCAAA+TGG - chr7_1:63805149-63805168 None:intergenic 35.0%
!! TTAGTTACTGTTTTGTTCCG+TGG + chr7_1:63805319-63805338 Msa1030020:intron 35.0%
GTGTGATTGATAGAACACTA+TGG + chr7_1:63805696-63805715 Msa1030020:intron 35.0%
!! AATCTGTTTTAGGTCCTGTT+TGG + chr7_1:63805859-63805878 Msa1030020:intron 35.0%
GTTTATCCAAACATCCAAAC+AGG - chr7_1:63805876-63805895 None:intergenic 35.0%
ATAGCACAAGCGTTTATCAT+AGG + chr7_1:63805913-63805932 Msa1030020:intron 35.0%
GTCAATAAGCATGTTTGGAT+TGG - chr7_1:63806123-63806142 None:intergenic 35.0%
!! AATTTTCTGTGGTTAGCTGT+TGG + chr7_1:63806154-63806173 Msa1030020:intron 35.0%
TGTCATCATTTGAGTAGTCA+CGG - chr7_1:63806602-63806621 None:intergenic 35.0%
! TGGTTGGTCATTTAAACAGT+AGG - chr7_1:63807278-63807297 None:intergenic 35.0%
TAATCGCATGATTGTTTGGT+TGG - chr7_1:63807294-63807313 None:intergenic 35.0%
GCAAAGAAGACACTTGAAAA+TGG - chr7_1:63807387-63807406 None:intergenic 35.0%
GTTGTTGCATTCTCTAAGTT+TGG + chr7_1:63807408-63807427 Msa1030020:intron 35.0%
TGAAAAAGGTGAAGCAATAC+TGG - chr7_1:63807532-63807551 None:intergenic 35.0%
!!! CTGTTTTTGTTGTTGCTGAT+TGG + chr7_1:63807745-63807764 Msa1030020:intron 35.0%
! GTTGTTGCTGATTGGTTATT+AGG + chr7_1:63807753-63807772 Msa1030020:intron 35.0%
TGGTTATTAGGAAATGACTC+TGG + chr7_1:63807765-63807784 Msa1030020:intron 35.0%
TTATTAGGAAATGACTCTGG+AGG + chr7_1:63807768-63807787 Msa1030020:intron 35.0%
TCTAAAGACTGAAGAGAGAA+AGG + chr7_1:63807834-63807853 Msa1030020:CDS 35.0%
! TAAAGCATTTGAAACCATGC+AGG + chr7_1:63807864-63807883 Msa1030020:CDS 35.0%
ATTGTCTTTCTTGCACGATA+AGG - chr7_1:63807890-63807909 None:intergenic 35.0%
TGCACTTCTATCTTTGTTCT+AGG + chr7_1:63808022-63808041 Msa1030020:intron 35.0%
GCACTTCTATCTTTGTTCTA+GGG + chr7_1:63808023-63808042 Msa1030020:intron 35.0%
TTGTCAAATAGCGACTATAG+TGG + chr7_1:63808180-63808199 Msa1030020:intron 35.0%
TGTCAAATAGCGACTATAGT+GGG + chr7_1:63808181-63808200 Msa1030020:intron 35.0%
CCATATTCTGCTACGTTATA+AGG - chr7_1:63808207-63808226 None:intergenic 35.0%
CCTTATAACGTAGCAGAATA+TGG + chr7_1:63808204-63808223 Msa1030020:intron 35.0%
ATATAGGGTGCAAGTACATA+GGG + chr7_1:63808247-63808266 Msa1030020:intron 35.0%
CAAACGCGATAAAAGGATAA+AGG - chr7_1:63809024-63809043 None:intergenic 35.0%
! TATCGCGTTTGACATTTTTC+GGG + chr7_1:63809033-63809052 Msa1030020:three_prime_UTR 35.0%
!!! TTTGACATTTTTCGGGGAAA+TGG + chr7_1:63809040-63809059 Msa1030020:three_prime_UTR 35.0%
GGGGAAAATAAGTTAAATGG+TGG + chr7_1:63809172-63809191 Msa1030020:three_prime_UTR 35.0%
!!! GGATTTACAAGTGTTTTAGC+AGG + chr7_1:63809228-63809247 Msa1030020:three_prime_UTR 35.0%
!! ATTTTTCAGCTACCAAGTGT+TGG + chr7_1:63809260-63809279 Msa1030020:three_prime_UTR 35.0%
GAAAGTCATCACAACATTCA+TGG - chr7_1:63809402-63809421 None:intergenic 35.0%
TGAAGTGAGAGAGAAATGCA+CGG - chr7_1:63804918-63804937 None:intergenic 40.0%
TCTCTTTCTCTCTCTCATTG+CGG + chr7_1:63804952-63804971 Msa1030020:five_prime_UTR 40.0%
ACGAAGGAGAAGATAGAGAT+CGG - chr7_1:63805015-63805034 None:intergenic 40.0%
ACAGCAAAGACAATAACACG+CGG - chr7_1:63805095-63805114 None:intergenic 40.0%
ATGTAGCAACCCCAGTTAAT+GGG + chr7_1:63805732-63805751 Msa1030020:intron 40.0%
! AAGCCTTATCCCATTAACTG+GGG - chr7_1:63805744-63805763 None:intergenic 40.0%
! CAAGCCTTATCCCATTAACT+GGG - chr7_1:63805745-63805764 None:intergenic 40.0%
ATGCATGTTGAGAAGAACAG+AGG + chr7_1:63805803-63805822 Msa1030020:intron 40.0%
TGCATGTTGAGAAGAACAGA+GGG + chr7_1:63805804-63805823 Msa1030020:intron 40.0%
TTAGGTCCTGTTTGGATGTT+TGG + chr7_1:63805867-63805886 Msa1030020:intron 40.0%
GCTTATTTCAGCTTGTCTAC+GGG - chr7_1:63806101-63806120 None:intergenic 40.0%
GGCTTATTTCAGCTTGTCTA+CGG - chr7_1:63806102-63806121 None:intergenic 40.0%
CAAATTTCAACTGACTGGAC+TGG - chr7_1:63806267-63806286 None:intergenic 40.0%
TGTGGCGTTCAAATGTTCTT+CGG - chr7_1:63806782-63806801 None:intergenic 40.0%
AGAAACGATTTCAAGCGTGA+AGG + chr7_1:63806910-63806929 Msa1030020:intron 40.0%
TTTCTTCAGCTTCATTGGCA+GGG - chr7_1:63807187-63807206 None:intergenic 40.0%
! TTTTCTTCAGCTTCATTGGC+AGG - chr7_1:63807188-63807207 None:intergenic 40.0%
TGCCAATGAAGCTGAAGAAA+AGG + chr7_1:63807187-63807206 Msa1030020:CDS 40.0%
! CTCCTTTTCTTCAGCTTCAT+TGG - chr7_1:63807192-63807211 None:intergenic 40.0%
ACTGTTGCATTCTCCAAGTT+TGG + chr7_1:63807246-63807265 Msa1030020:intron 40.0%
CAGTAGGAAAACACCAAACT+TGG - chr7_1:63807262-63807281 None:intergenic 40.0%
GCACCTCATAAGAAACAACA+AGG - chr7_1:63807614-63807633 None:intergenic 40.0%
TGTTTCTTATGAGGTGCACT+TGG + chr7_1:63807617-63807636 Msa1030020:intron 40.0%
GTGCACTTGGTTATTTGCAA+AGG + chr7_1:63807630-63807649 Msa1030020:intron 40.0%
! AGTGCTGGAAGAGAAAAGAA+AGG + chr7_1:63807801-63807820 Msa1030020:CDS 40.0%
!! TTTGTTCTAGGGAGCTGATA+AGG + chr7_1:63808034-63808053 Msa1030020:intron 40.0%
TGATAAGGATAAGCGCAAAG+AGG + chr7_1:63808049-63808068 Msa1030020:CDS 40.0%
TTGCACCCTATATGGAACAA+TGG - chr7_1:63808240-63808259 None:intergenic 40.0%
CTATGTACTTGCACCCTATA+TGG - chr7_1:63808248-63808267 None:intergenic 40.0%
CATATAGGGTGCAAGTACAT+AGG + chr7_1:63808246-63808265 Msa1030020:intron 40.0%
TCTAGTAACCATTGCCTTCT+TGG + chr7_1:63808429-63808448 Msa1030020:intron 40.0%
CTAGTAACCATTGCCTTCTT+GGG + chr7_1:63808430-63808449 Msa1030020:intron 40.0%
TATGGTTTACCTTCCCAAGA+AGG - chr7_1:63808446-63808465 None:intergenic 40.0%
AATCCCACTATAACTCAGGT+GGG + chr7_1:63808685-63808704 Msa1030020:CDS 40.0%
CATTGCTGTACGAATTTCCA+CGG - chr7_1:63808776-63808795 None:intergenic 40.0%
ATAAAGGGAAATGGCTGCAA+GGG - chr7_1:63809008-63809027 None:intergenic 40.0%
! ATCGCGTTTGACATTTTTCG+GGG + chr7_1:63809034-63809053 Msa1030020:three_prime_UTR 40.0%
!!! ATTTTTCGGGGAAATGGTTG+CGG + chr7_1:63809046-63809065 Msa1030020:three_prime_UTR 40.0%
TTGAAATTCTCTGCTGTGGT+TGG + chr7_1:63809195-63809214 Msa1030020:three_prime_UTR 40.0%
! TGCTGTGGTTGGTATAATGT+GGG + chr7_1:63809206-63809225 Msa1030020:three_prime_UTR 40.0%
!! TACCAAGTGTTGGTAGAATC+AGG + chr7_1:63809270-63809289 Msa1030020:three_prime_UTR 40.0%
GATAGAGATCGGAGAGAGAA+GGG - chr7_1:63805004-63805023 None:intergenic 45.0%
AGATAGAGATCGGAGAGAGA+AGG - chr7_1:63805005-63805024 None:intergenic 45.0%
CTATCTTCTCCTTCGTACGA+TGG + chr7_1:63805019-63805038 Msa1030020:five_prime_UTR 45.0%
GCATAGTTACCATCGTACGA+AGG - chr7_1:63805031-63805050 None:intergenic 45.0%
AGTTTAACACACGAGCGTCA+GGG - chr7_1:63805068-63805087 None:intergenic 45.0%
AAGTTTAACACACGAGCGTC+AGG - chr7_1:63805069-63805088 None:intergenic 45.0%
!! TGCTAAGAAAGGTGCTGTCA+AGG + chr7_1:63805232-63805251 Msa1030020:CDS 45.0%
!! AAAGGTGCTGTCAAGGAACA+GGG + chr7_1:63805239-63805258 Msa1030020:CDS 45.0%
CATGTAGCAACCCCAGTTAA+TGG + chr7_1:63805731-63805750 Msa1030020:intron 45.0%
CAACCCCAGTTAATGGGATA+AGG + chr7_1:63805738-63805757 Msa1030020:intron 45.0%
! CCAAGCCTTATCCCATTAAC+TGG - chr7_1:63805746-63805765 None:intergenic 45.0%
CCAGTTAATGGGATAAGGCT+TGG + chr7_1:63805743-63805762 Msa1030020:intron 45.0%
! TGAGCATTTTGTTCTGTGCG+TGG + chr7_1:63806315-63806334 Msa1030020:intron 45.0%
GTCCTGTTGAAGAAGGAGAT+AGG + chr7_1:63806658-63806677 Msa1030020:CDS 45.0%
GACCTATCTCCTTCTTCAAC+AGG - chr7_1:63806663-63806682 None:intergenic 45.0%
TCCTCAGAAAGACGTAGCTA+TGG + chr7_1:63806681-63806700 Msa1030020:CDS 45.0%
ACCATAGCTACGTCTTTCTG+AGG - chr7_1:63806685-63806704 None:intergenic 45.0%
TCAGAAAGACGTAGCTATGG+TGG + chr7_1:63806684-63806703 Msa1030020:CDS 45.0%
! GGTTTCAACAATGGTGATGC+TGG + chr7_1:63806741-63806760 Msa1030020:CDS 45.0%
! AATGGTGATGCTGGTGAAGA+GGG + chr7_1:63806750-63806769 Msa1030020:CDS 45.0%
TGGCGTTCAAATGTTCTTCG+GGG - chr7_1:63806780-63806799 None:intergenic 45.0%
GTGGCGTTCAAATGTTCTTC+GGG - chr7_1:63806781-63806800 None:intergenic 45.0%
AGAACATTTGAACGCCACAG+TGG + chr7_1:63806783-63806802 Msa1030020:CDS 45.0%
CTGAAACTGATGTTGCCGAA+GGG + chr7_1:63807150-63807169 Msa1030020:CDS 45.0%
AGAAAAGGAGCCTGAAGACA+AGG + chr7_1:63807202-63807221 Msa1030020:CDS 45.0%
CGGACATTTACCTTGTCTTC+AGG - chr7_1:63807215-63807234 None:intergenic 45.0%
TGCAACAGTACGAATGGAGA+CGG - chr7_1:63807235-63807254 None:intergenic 45.0%
GGAGAATGCAACAGTACGAA+TGG - chr7_1:63807241-63807260 None:intergenic 45.0%
! GGAGGAATATGAGAAAGTGC+TGG + chr7_1:63807786-63807805 Msa1030020:CDS 45.0%
CAAGGAAGAGAAAGCCAAGA+AGG + chr7_1:63808079-63808098 Msa1030020:CDS 45.0%
! CTCGTTTTGTGTGACGATCA+AGG + chr7_1:63808359-63808378 Msa1030020:intron 45.0%
TAACCATTGCCTTCTTGGGA+AGG + chr7_1:63808434-63808453 Msa1030020:intron 45.0%
TTACCTTCCCAAGAAGGCAA+TGG - chr7_1:63808440-63808459 None:intergenic 45.0%
GGAGAATCCCACTATAACTC+AGG + chr7_1:63808681-63808700 Msa1030020:CDS 45.0%
GAATCCCACTATAACTCAGG+TGG + chr7_1:63808684-63808703 Msa1030020:CDS 45.0%
AGGACAGATATGCGCGAAAA+GGG - chr7_1:63808856-63808875 None:intergenic 45.0%
TAGGACAGATATGCGCGAAA+AGG - chr7_1:63808857-63808876 None:intergenic 45.0%
GATAAAGGGAAATGGCTGCA+AGG - chr7_1:63809009-63809028 None:intergenic 45.0%
!!! TTTTTCGGGGAAATGGTTGC+GGG + chr7_1:63809047-63809066 Msa1030020:three_prime_UTR 45.0%
GTGGTTGAAATTCTCTGCTG+TGG + chr7_1:63809191-63809210 Msa1030020:three_prime_UTR 45.0%
! CTGCTGTGGTTGGTATAATG+TGG + chr7_1:63809205-63809224 Msa1030020:three_prime_UTR 45.0%
! GCTGTGGTTGGTATAATGTG+GGG + chr7_1:63809207-63809226 Msa1030020:three_prime_UTR 45.0%
AGCCTGATTCTACCAACACT+TGG - chr7_1:63809275-63809294 None:intergenic 45.0%
GGCAACCTAATCTCCAACGT+TGG - chr7_1:63804897-63804916 None:intergenic 50.0%
TTCTCTCTCTCATTGCGGCT+AGG + chr7_1:63804957-63804976 Msa1030020:five_prime_UTR 50.0%
TCTCTCTCTCATTGCGGCTA+GGG + chr7_1:63804958-63804977 Msa1030020:five_prime_UTR 50.0%
!! TTTGCTTGGTGATGACGCTG+AGG + chr7_1:63805154-63805173 Msa1030020:CDS 50.0%
CAGCAACGATGAGCTGAGAA+GGG - chr7_1:63805181-63805200 None:intergenic 50.0%
TCAGCAACGATGAGCTGAGA+AGG - chr7_1:63805182-63805201 None:intergenic 50.0%
ACAGCACCTTTCTTAGCAGC+AGG - chr7_1:63805230-63805249 None:intergenic 50.0%
!! GAAAGGTGCTGTCAAGGAAC+AGG + chr7_1:63805238-63805257 Msa1030020:CDS 50.0%
AGTAACTAACCAGCCTGAGC+AGG - chr7_1:63805308-63805327 None:intergenic 50.0%
TGAGAAGAACAGAGGGCTAG+TGG + chr7_1:63805811-63805830 Msa1030020:intron 50.0%
GTGAGGGAGTCCAGAAATGA+AGG + chr7_1:63806471-63806490 Msa1030020:intron 50.0%
AGGGAGTCCAGAAATGAAGG+AGG + chr7_1:63806474-63806493 Msa1030020:CDS 50.0%
TCCAGAAATGAAGGAGGACG+CGG + chr7_1:63806480-63806499 Msa1030020:CDS 50.0%
!! AACAGGACCCTGGTTTTCAG+GGG - chr7_1:63806646-63806665 None:intergenic 50.0%
!! CAACAGGACCCTGGTTTTCA+GGG - chr7_1:63806647-63806666 None:intergenic 50.0%
!! TCAACAGGACCCTGGTTTTC+AGG - chr7_1:63806648-63806667 None:intergenic 50.0%
AACCAGGGTCCTGTTGAAGA+AGG + chr7_1:63806651-63806670 Msa1030020:CDS 50.0%
CGTCGTGGAGGTTTCAACAA+TGG + chr7_1:63806732-63806751 Msa1030020:CDS 50.0%
! CAATGGTGATGCTGGTGAAG+AGG + chr7_1:63806749-63806768 Msa1030020:CDS 50.0%
! GATTTCAAGCGTGAAGGTGC+TGG + chr7_1:63806916-63806935 Msa1030020:CDS 50.0%
GCAACATCAGTTTCAGCTGC+AGG - chr7_1:63807146-63807165 None:intergenic 50.0%
GCTGAAACTGATGTTGCCGA+AGG + chr7_1:63807149-63807168 Msa1030020:CDS 50.0%
TGATGTTGCCGAAGGGAACA+AGG + chr7_1:63807157-63807176 Msa1030020:CDS 50.0%
AGGGCTATCCTTGTTCCCTT+CGG - chr7_1:63807168-63807187 None:intergenic 50.0%
GGACACAGAGCACAGAGAAA+TGG - chr7_1:63807674-63807693 None:intergenic 50.0%
GCGCAAAGAGGCTTATGACA+AGG + chr7_1:63808061-63808080 Msa1030020:CDS 50.0%
!! GAGTTTCTGAAGCCAGCTGA+AGG + chr7_1:63808660-63808679 Msa1030020:CDS 50.0%
TAGTGGGATTCTCCTTCAGC+TGG - chr7_1:63808675-63808694 None:intergenic 50.0%
GGATCTTCAATGGATGGAGC+AGG - chr7_1:63808801-63808820 None:intergenic 50.0%
GCTCCATCCATTGAAGATCC+CGG + chr7_1:63808801-63808820 Msa1030020:CDS 50.0%
CTCCATCCATTGAAGATCCC+GGG + chr7_1:63808802-63808821 Msa1030020:CDS 50.0%
GAAATGCCCGGGATCTTCAA+TGG - chr7_1:63808811-63808830 None:intergenic 50.0%
TTCACTTGGCACCCAAGGTA+GGG - chr7_1:63808833-63808852 None:intergenic 50.0%
ATGCGCGAAAAGGGTTCACT+TGG - chr7_1:63808847-63808866 None:intergenic 50.0%
!! TTTTCGGGGAAATGGTTGCG+GGG + chr7_1:63809048-63809067 Msa1030020:three_prime_UTR 50.0%
CGAGCGTCAGGGTTGAAACT+AGG - chr7_1:63805057-63805076 None:intergenic 55.0%
GCTCCTCCTGCTGCTAAGAA+AGG + chr7_1:63805221-63805240 Msa1030020:CDS 55.0%
GCACCTTTCTTAGCAGCAGG+AGG - chr7_1:63805227-63805246 None:intergenic 55.0%
! GGCAACAACGCAGGCTTGTT+AGG - chr7_1:63805269-63805288 None:intergenic 55.0%
GGCTTAGAAGGCAACAACGC+AGG - chr7_1:63805278-63805297 None:intergenic 55.0%
ACTAACCAGCCTGAGCAGGA+GGG - chr7_1:63805304-63805323 None:intergenic 55.0%
AACTAACCAGCCTGAGCAGG+AGG - chr7_1:63805305-63805324 None:intergenic 55.0%
ACCGCGTCCTCCTTCATTTC+TGG - chr7_1:63806484-63806503 None:intergenic 55.0%
AGAAATGAAGGAGGACGCGG+TGG + chr7_1:63806483-63806502 Msa1030020:CDS 55.0%
GACAATTCGTTCCCTGCCTC+TGG + chr7_1:63806618-63806637 Msa1030020:CDS 55.0%
! TCTGGAGCCCCTGAAAACCA+GGG + chr7_1:63806636-63806655 Msa1030020:CDS 55.0%
CTCCTTCTTCAACAGGACCC+TGG - chr7_1:63806656-63806675 None:intergenic 55.0%
TTTGAACGCCACAGTGGCAC+TGG + chr7_1:63806789-63806808 Msa1030020:CDS 55.0%
TTGAACGCCACAGTGGCACT+GGG + chr7_1:63806790-63806809 Msa1030020:CDS 55.0%
!! TCAAGCGTGAAGGTGCTGGA+AGG + chr7_1:63806920-63806939 Msa1030020:CDS 55.0%
!! CAAGCGTGAAGGTGCTGGAA+GGG + chr7_1:63806921-63806940 Msa1030020:CDS 55.0%
!! AAGCGTGAAGGTGCTGGAAG+GGG + chr7_1:63806922-63806941 Msa1030020:CDS 55.0%
!! AAGGTGCTGGAAGGGGTAAC+TGG + chr7_1:63806929-63806948 Msa1030020:CDS 55.0%
!! AGGTGCTGGAAGGGGTAACT+GGG + chr7_1:63806930-63806949 Msa1030020:CDS 55.0%
CTTGCACGATAAGGCCTGCA+TGG - chr7_1:63807881-63807900 None:intergenic 55.0%
GCGCCCACCTGAGTTATAGT+GGG - chr7_1:63808691-63808710 None:intergenic 55.0%
CACTATAACTCAGGTGGGCG+CGG + chr7_1:63808690-63808709 Msa1030020:CDS 55.0%
TGCCCGGGATCTTCAATGGA+TGG - chr7_1:63808807-63808826 None:intergenic 55.0%
ACCCAAGGTAGGGAAATGCC+CGG - chr7_1:63808823-63808842 None:intergenic 55.0%
GTTCACTTGGCACCCAAGGT+AGG - chr7_1:63808834-63808853 None:intergenic 55.0%
AAGGGTTCACTTGGCACCCA+AGG - chr7_1:63808838-63808857 None:intergenic 55.0%
TTTCGGGGAAATGGTTGCGG+GGG + chr7_1:63809049-63809068 Msa1030020:three_prime_UTR 55.0%
GCAGGAGGGGTAGGCTTAGA+AGG - chr7_1:63805290-63805309 None:intergenic 60.0%
TAAGCCTACCCCTCCTGCTC+AGG + chr7_1:63805292-63805311 Msa1030020:CDS 60.0%
CTAACCAGCCTGAGCAGGAG+GGG - chr7_1:63805303-63805322 None:intergenic 60.0%
!! GGTCGTGGATTTGGTGGACG+AGG + chr7_1:63806504-63806523 Msa1030020:CDS 60.0%
!! CGTGGATTTGGTGGACGAGG+AGG + chr7_1:63806507-63806526 Msa1030020:CDS 60.0%
CTCCACGTCCACCAAACCCA+CGG - chr7_1:63806536-63806555 None:intergenic 60.0%
CACGACCACCACCAAATCCG+CGG - chr7_1:63806563-63806582 None:intergenic 60.0%
!! GGATTTGGTGGTGGTCGTGG+AGG + chr7_1:63806564-63806583 Msa1030020:CDS 60.0%
GGTCGTGGAGGTCGTGGTTT+CGG + chr7_1:63806576-63806595 Msa1030020:CDS 60.0%
TTTCAGGGGCTCCAGAGGCA+GGG - chr7_1:63806632-63806651 None:intergenic 60.0%
!! TTTTCAGGGGCTCCAGAGGC+AGG - chr7_1:63806633-63806652 None:intergenic 60.0%
!! CTGGTTTTCAGGGGCTCCAG+AGG - chr7_1:63806637-63806656 None:intergenic 60.0%
!! CTCTGGAGCCCCTGAAAACC+AGG + chr7_1:63806635-63806654 Msa1030020:CDS 60.0%
!! CGTAGCTATGGTGGACCACG+AGG + chr7_1:63806693-63806712 Msa1030020:CDS 60.0%
! GGTGCTGGAAGGGGTAACTG+GGG + chr7_1:63806931-63806950 Msa1030020:CDS 60.0%
CGCGCCCACCTGAGTTATAG+TGG - chr7_1:63808692-63808711 None:intergenic 60.0%
CTCCTCCTCCTCGTGTACCA+CGG - chr7_1:63808731-63808750 None:intergenic 60.0%
TCCCGGGCATTTCCCTACCT+TGG + chr7_1:63808818-63808837 Msa1030020:CDS 60.0%
CCCAAGGTAGGGAAATGCCC+GGG - chr7_1:63808822-63808841 None:intergenic 60.0%
CCCGGGCATTTCCCTACCTT+GGG + chr7_1:63808819-63808838 Msa1030020:CDS 60.0%
GGACGCGGTGGTCGTGGATT+TGG + chr7_1:63806495-63806514 Msa1030020:CDS 65.0%
CGCGGTGGTCGTGGATTTGG+TGG + chr7_1:63806498-63806517 Msa1030020:CDS 65.0%
GTGGACGAGGAGGTGACCGT+GGG + chr7_1:63806517-63806536 Msa1030020:CDS 65.0%
CGAGGAGGTGACCGTGGGTT+TGG + chr7_1:63806522-63806541 Msa1030020:CDS 65.0%
GGAGGTGACCGTGGGTTTGG+TGG + chr7_1:63806525-63806544 Msa1030020:CDS 65.0%
!! GACCGTGGGTTTGGTGGACG+TGG + chr7_1:63806531-63806550 Msa1030020:CDS 65.0%
!! CGTGGGTTTGGTGGACGTGG+AGG + chr7_1:63806534-63806553 Msa1030020:CDS 65.0%
CGTGGAGGTGACCGCGGATT+TGG + chr7_1:63806549-63806568 Msa1030020:CDS 65.0%
GGAGGTGACCGCGGATTTGG+TGG + chr7_1:63806552-63806571 Msa1030020:CDS 65.0%
!! GGTGACCGCGGATTTGGTGG+TGG + chr7_1:63806555-63806574 Msa1030020:CDS 65.0%
!! CGCGGATTTGGTGGTGGTCG+TGG + chr7_1:63806561-63806580 Msa1030020:CDS 65.0%
AACCTCCACGACGACCTCCG+CGG - chr7_1:63806725-63806744 None:intergenic 65.0%
ATAACTCAGGTGGGCGCGGC+AGG + chr7_1:63808694-63808713 Msa1030020:CDS 65.0%
TAACTCAGGTGGGCGCGGCA+GGG + chr7_1:63808695-63808714 Msa1030020:CDS 65.0%
CGTGGTACACGAGGAGGAGG+AGG + chr7_1:63808729-63808748 Msa1030020:CDS 65.0%
GGTACACGAGGAGGAGGAGG+AGG + chr7_1:63808732-63808751 Msa1030020:CDS 65.0%
ACACGAGGAGGAGGAGGAGG+AGG + chr7_1:63808735-63808754 Msa1030020:CDS 65.0%
GGAGGAGGAGGAGGTTTCCG+TGG + chr7_1:63808756-63808775 Msa1030020:CDS 65.0%
CCAGCCTGAGCAGGAGGGGT+AGG - chr7_1:63805299-63805318 None:intergenic 70.0%
CCTACCCCTCCTGCTCAGGC+TGG + chr7_1:63805296-63805315 Msa1030020:CDS 70.0%
GAAGGAGGACGCGGTGGTCG+TGG + chr7_1:63806489-63806508 Msa1030020:CDS 70.0%
GGTGGACGAGGAGGTGACCG+TGG + chr7_1:63806516-63806535 Msa1030020:CDS 70.0%
GGTGGACGTGGAGGTGACCG+CGG + chr7_1:63806543-63806562 Msa1030020:CDS 70.0%
! GGTGGTGGTCGTGGAGGTCG+TGG + chr7_1:63806570-63806589 Msa1030020:CDS 70.0%
GGACCACGAGGTCCCTACCG+CGG + chr7_1:63806705-63806724 Msa1030020:CDS 70.0%
CCACGACGACCTCCGCGGTA+GGG - chr7_1:63806720-63806739 None:intergenic 70.0%
TCCACGACGACCTCCGCGGT+AGG - chr7_1:63806721-63806740 None:intergenic 70.0%
TACCGCGGAGGTCGTCGTGG+AGG + chr7_1:63806720-63806739 Msa1030020:CDS 70.0%
! GCCACAGTGGCACTGGGCGA+GGG + chr7_1:63806796-63806815 Msa1030020:CDS 70.0%
! ACCCTCGCCCAGTGCCACTG+TGG - chr7_1:63806800-63806819 None:intergenic 70.0%
AACTCAGGTGGGCGCGGCAG+GGG + chr7_1:63808696-63808715 Msa1030020:CDS 70.0%
CGTGGTGGCCGTGGTACACG+AGG + chr7_1:63808720-63808739 Msa1030020:CDS 70.0%
GGTGGCCGTGGTACACGAGG+AGG + chr7_1:63808723-63808742 Msa1030020:CDS 70.0%
GGCCGTGGTACACGAGGAGG+AGG + chr7_1:63808726-63808745 Msa1030020:CDS 70.0%
CGAGGAGGAGGAGGAGGAGG+AGG + chr7_1:63808738-63808757 Msa1030020:CDS 70.0%
GGAGGAGGAGGAGGAGGAGG+AGG + chr7_1:63808741-63808760 Msa1030020:CDS 70.0%
GGAGGAGGAGGAGGAGGAGG+AGG + chr7_1:63808741-63808760 Msa1030020:CDS 70.0%
GGAGGAGGAGGAGGAGGAGG+AGG + chr7_1:63808741-63808760 Msa1030020:CDS 70.0%
CCTCCGCGGTAGGGACCTCG+TGG - chr7_1:63806711-63806730 None:intergenic 75.0%
CCACGAGGTCCCTACCGCGG+AGG + chr7_1:63806708-63806727 Msa1030020:CDS 75.0%
CCCTACCGCGGAGGTCGTCG+TGG + chr7_1:63806717-63806736 Msa1030020:CDS 75.0%
! CGCCACAGTGGCACTGGGCG+AGG + chr7_1:63806795-63806814 Msa1030020:CDS 75.0%
! GGCAGGGGACGTGGTGGCCG+TGG + chr7_1:63808711-63808730 Msa1030020:CDS 80.0%
! GGTGGGCGCGGCAGGGGACG+TGG + chr7_1:63808702-63808721 Msa1030020:CDS 85.0%
! GGGCGCGGCAGGGGACGTGG+TGG + chr7_1:63808705-63808724 Msa1030020:CDS 85.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 63804865 63809429 63804865 ID=Msa1030020;Name=Msa1030020
chr7_1 mRNA 63804865 63809429 63804865 ID=Msa1030020-mRNA-1;Parent=Msa1030020;Name=Msa1030020-mRNA-1;_AED=0.03;_eAED=0.03;_QI=266|1|1|1|1|1|7|578|383
chr7_1 exon 63804865 63805317 63804865 ID=Msa1030020-mRNA-1:exon:13924;Parent=Msa1030020-mRNA-1
chr7_1 exon 63806472 63806817 63806472 ID=Msa1030020-mRNA-1:exon:13925;Parent=Msa1030020-mRNA-1
chr7_1 exon 63806912 63806977 63806912 ID=Msa1030020-mRNA-1:exon:13926;Parent=Msa1030020-mRNA-1
chr7_1 exon 63807091 63807223 63807091 ID=Msa1030020-mRNA-1:exon:13927;Parent=Msa1030020-mRNA-1
chr7_1 exon 63807775 63807930 63807775 ID=Msa1030020-mRNA-1:exon:13928;Parent=Msa1030020-mRNA-1
chr7_1 exon 63808044 63808100 63808044 ID=Msa1030020-mRNA-1:exon:13929;Parent=Msa1030020-mRNA-1
chr7_1 exon 63808645 63809429 63808645 ID=Msa1030020-mRNA-1:exon:13930;Parent=Msa1030020-mRNA-1
chr7_1 five_prime_UTR 63804865 63805130 63804865 ID=Msa1030020-mRNA-1:five_prime_utr;Parent=Msa1030020-mRNA-1
chr7_1 CDS 63805131 63805317 63805131 ID=Msa1030020-mRNA-1:cds;Parent=Msa1030020-mRNA-1
chr7_1 CDS 63806472 63806817 63806472 ID=Msa1030020-mRNA-1:cds;Parent=Msa1030020-mRNA-1
chr7_1 CDS 63806912 63806977 63806912 ID=Msa1030020-mRNA-1:cds;Parent=Msa1030020-mRNA-1
chr7_1 CDS 63807091 63807223 63807091 ID=Msa1030020-mRNA-1:cds;Parent=Msa1030020-mRNA-1
chr7_1 CDS 63807775 63807930 63807775 ID=Msa1030020-mRNA-1:cds;Parent=Msa1030020-mRNA-1
chr7_1 CDS 63808044 63808100 63808044 ID=Msa1030020-mRNA-1:cds;Parent=Msa1030020-mRNA-1
chr7_1 CDS 63808645 63808851 63808645 ID=Msa1030020-mRNA-1:cds;Parent=Msa1030020-mRNA-1
chr7_1 three_prime_UTR 63808852 63809429 63808852 ID=Msa1030020-mRNA-1:three_prime_utr;Parent=Msa1030020-mRNA-1
Gene Sequence

>Msa1030020

ATGGCCACTACCAATCCATTTGATTTGCTTGGTGATGACGCTGAGGACCCTTCTCAGCTCATCGTTGCTGAACAGCTCAAAGCTGCTGCTGCTCCTCCTGCTGCTAAGAAAGGTGCTGTCAAGGAACAGGGCAAGCCTAACAAGCCTGCGTTGTTGCCTTCTAAGCCTACCCCTCCTGCTCAGGCTGTGAGGGAGTCCAGAAATGAAGGAGGACGCGGTGGTCGTGGATTTGGTGGACGAGGAGGTGACCGTGGGTTTGGTGGACGTGGAGGTGACCGCGGATTTGGTGGTGGTCGTGGAGGTCGTGGTTTCGGCCGTGACTACTCAAATGATGACAATTCGTTCCCTGCCTCTGGAGCCCCTGAAAACCAGGGTCCTGTTGAAGAAGGAGATAGGTCCTCAGAAAGACGTAGCTATGGTGGACCACGAGGTCCCTACCGCGGAGGTCGTCGTGGAGGTTTCAACAATGGTGATGCTGGTGAAGAGGGAAGACCCCGAAGAACATTTGAACGCCACAGTGGCACTGGGCGAGGAAACGATTTCAAGCGTGAAGGTGCTGGAAGGGGTAACTGGGGAACAGAAACTGATGAAATTGCTCAGGTGACTGAAGAAGTCATGAATGAAGATGAAAAGAATTTGGGTGATGAGAAGCCTGCAGCTGAAACTGATGTTGCCGAAGGGAACAAGGATAGCCCTGCCAATGAAGCTGAAGAAAAGGAGCCTGAAGACAAGGAAATGACTCTGGAGGAATATGAGAAAGTGCTGGAAGAGAAAAGAAAGGCTTTGCAAGCTCTAAAGACTGAAGAGAGAAAGGTTGACACTAAAGCATTTGAAACCATGCAGGCCTTATCGTGCAAGAAAGACAATACTGAAATCTTTGCTAAATTGGGAGCTGATAAGGATAAGCGCAAAGAGGCTTATGACAAGGAAGAGAAAGCCAAGAAGTCTGTCAGTATCAATGAGTTTCTGAAGCCAGCTGAAGGAGAATCCCACTATAACTCAGGTGGGCGCGGCAGGGGACGTGGTGGCCGTGGTACACGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGTTTCCGTGGAAATTCGTACAGCAATGTACCTGCTCCATCCATTGAAGATCCCGGGCATTTCCCTACCTTGGGTGCCAAGTGA
Protein sequence

>Msa1030020

MATTNPFDLLGDDAEDPSQLIVAEQLKAAAAPPAAKKGAVKEQGKPNKPALLPSKPTPPAQAVRESRNEGGRGGRGFGGRGGDRGFGGRGGDRGFGGGRGGRGFGRDYSNDDNSFPASGAPENQGPVEEGDRSSERRSYGGPRGPYRGGRRGGFNNGDAGEEGRPRRTFERHSGTGRGNDFKREGAGRGNWGTETDEIAQVTEEVMNEDEKNLGDEKPAAETDVAEGNKDSPANEAEEKEPEDKEMTLEEYEKVLEEKRKALQALKTEERKVDTKAFETMQALSCKKDNTEIFAKLGADKDKRKEAYDKEEKAKKSVSINEFLKPAEGESHYNSGGRGRGRGGRGTRGGGGGGGGGGFRGNSYSNVPAPSIEDPGHFPTLGAK*