Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1112770 | RHN46944.1 | 96.319 | 163 | 3 | 1 | 1 | 160 | 40 | 202 | 7.84e-111 | 323 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1112770 | A0A396H5E4 | 96.319 | 163 | 3 | 1 | 1 | 160 | 40 | 202 | 3.74e-111 | 323 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0101820 | Msa1112770 | -0.810243 | 1.269968e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1112770 | MtrunA17_Chr7g0247601 | 96.319 | 163 | 3 | 1 | 1 | 160 | 40 | 202 | 7.21e-115 | 323 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1112770 | AT1G01730.1 | 35.119 | 168 | 84 | 4 | 6 | 155 | 47 | 207 | 3.27e-25 | 96.7 |
Find 45 sgRNAs with CRISPR-Local
Find 278 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCCATGGATTCTGTCTATTA+TGG | 0.320336 | 7_3:+58679571 | Msa1112770:CDS |
| CTTACTGTCTCGAATTTCAT+TGG | 0.323052 | 7_3:-58679138 | None:intergenic |
| GATGTAATTGGAAGTGGAAT+TGG | 0.337846 | 7_3:-58676282 | None:intergenic |
| TTGGTTGAATGAACAAGTTT+TGG | 0.347079 | 7_3:-58679725 | None:intergenic |
| AAACTGATACGCTATACTTT+TGG | 0.348435 | 7_3:-58679744 | None:intergenic |
| GCTACAGGTACATGTGCTTT+TGG | 0.369271 | 7_3:-58676203 | None:intergenic |
| AGATTCGAATGGTCTCTTCT+TGG | 0.375812 | 7_3:-58676255 | None:intergenic |
| AATGGTCTCTTCTTGGTTGA+AGG | 0.380210 | 7_3:-58676248 | None:intergenic |
| GTTGTTGGAGGATCAGCTTT+TGG | 0.392048 | 7_3:+58679526 | Msa1112770:CDS |
| GCCTCCACGTTTCAAGTCTC+CGG | 0.447122 | 7_3:+58679432 | Msa1112770:CDS |
| GTCTGCCTGTCTTCCACCAC+AGG | 0.447720 | 7_3:-58679490 | None:intergenic |
| TAACAGCCAATAGGAGTTCA+TGG | 0.448002 | 7_3:-58679945 | None:intergenic |
| TGAGTTGCGGCAGGAGCTAC+AGG | 0.465534 | 7_3:-58676218 | None:intergenic |
| ACACTAGGGACACATGTTGT+TGG | 0.470904 | 7_3:+58679511 | Msa1112770:CDS |
| TTCTCTACTTGAGTTTGCTC+CGG | 0.475424 | 7_3:-58679451 | None:intergenic |
| CGAGTAATCCTTTGGTGCCA+TGG | 0.477428 | 7_3:+58679630 | Msa1112770:exon |
| GTAGGACGAAGGAACAATTT+CGG | 0.487534 | 7_3:+58679593 | Msa1112770:CDS |
| AAAATGACCGAGTAATCCTT+TGG | 0.500995 | 7_3:+58679622 | Msa1112770:exon |
| GACCACCTGTGGTGGAAGAC+AGG | 0.503609 | 7_3:+58679485 | Msa1112770:CDS |
| CTCTAGGAGTAACAGCCAAT+AGG | 0.508028 | 7_3:-58679954 | None:intergenic |
| CTCCTAGAGATACATAATGT+TGG | 0.513659 | 7_3:+58679968 | Msa1112770:three_prime_UTR |
| GGAGTTTGTTGAGTTGCGGC+AGG | 0.525404 | 7_3:-58676227 | None:intergenic |
| CATGGCACCAAAGGATTACT+CGG | 0.529051 | 7_3:-58679629 | None:intergenic |
| ACGAAGGAACAATTTCGGTC+AGG | 0.534706 | 7_3:+58679598 | Msa1112770:CDS |
| CCTTCGTCCCCAGTTCATCC+AGG | 0.541342 | 7_3:+58676328 | Msa1112770:CDS |
| ATCCAACATTATGTATCTCT+AGG | 0.547383 | 7_3:-58679970 | None:intergenic |
| ATTAAATTCAGCAAGAGACT+AGG | 0.547844 | 7_3:+58679785 | Msa1112770:three_prime_UTR |
| TTGCGGCGCCATGGCACCAA+AGG | 0.548520 | 7_3:-58679638 | None:intergenic |
| GTGGAAGACAGGCAGACACT+AGG | 0.549315 | 7_3:+58679496 | Msa1112770:CDS |
| TAATAGACAGAATCCATGGC+TGG | 0.561210 | 7_3:-58679568 | None:intergenic |
| TTGATTTCACCATTCATGGA+AGG | 0.566524 | 7_3:+58676179 | None:intergenic |
| AGATCTTGATTGCGGCGCCA+TGG | 0.572865 | 7_3:-58679647 | None:intergenic |
| TGGAAGACAGGCAGACACTA+GGG | 0.575116 | 7_3:+58679497 | Msa1112770:CDS |
| CTAGGGACACATGTTGTTGG+AGG | 0.591513 | 7_3:+58679514 | Msa1112770:CDS |
| TGAAGGAGTTTGTTGAGTTG+CGG | 0.591629 | 7_3:-58676231 | None:intergenic |
| ACCATAATAGACAGAATCCA+TGG | 0.593761 | 7_3:-58679572 | None:intergenic |
| TGGATTCTGTCTATTATGGT+AGG | 0.595747 | 7_3:+58679575 | Msa1112770:CDS |
| TGCCTGTCTTCCACCACAGG+TGG | 0.604374 | 7_3:-58679487 | None:intergenic |
| CCTGGATGAACTGGGGACGA+AGG | 0.636286 | 7_3:-58676328 | None:intergenic |
| TCCGGAGACTTGAAACGTGG+AGG | 0.658065 | 7_3:-58679433 | None:intergenic |
| ATGTTGTAAGATCTTGATTG+CGG | 0.669146 | 7_3:-58679655 | None:intergenic |
| TGCTCCGGAGACTTGAAACG+TGG | 0.675943 | 7_3:-58679436 | None:intergenic |
| GAAGGTCACGAACTAGAGCA+CGG | 0.700506 | 7_3:-58676310 | None:intergenic |
| TGTCTATTATGGTAGGACGA+AGG | 0.707699 | 7_3:+58679582 | Msa1112770:CDS |
| GAATTGGAATCAGATTCGAA+TGG | 0.715628 | 7_3:-58676266 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TCATTTTTGAATTTAAATTT+AGG | + | chr7_3:58676531-58676550 | Msa1112770:intron | 10.0% |
| !!! | CATTTTTGAATTTAAATTTA+GGG | + | chr7_3:58676532-58676551 | Msa1112770:intron | 10.0% |
| !! | ATATCATAATTTCATTAAAT+TGG | - | chr7_3:58677002-58677021 | None:intergenic | 10.0% |
| !! | AGAAATTTAATTAAAAAATC+TGG | - | chr7_3:58677130-58677149 | None:intergenic | 10.0% |
| !!! | TATTATAATTCCTATTTTTA+TGG | - | chr7_3:58677961-58677980 | None:intergenic | 10.0% |
| !! | ATAAAAATAGGAATTATAAT+AGG | + | chr7_3:58677960-58677979 | Msa1112770:intron | 10.0% |
| !!! | TTCATTTTTAATTTCTAAAT+AGG | + | chr7_3:58678279-58678298 | Msa1112770:intron | 10.0% |
| !! | TGAAATATGATATTATAATT+TGG | - | chr7_3:58679168-58679187 | None:intergenic | 10.0% |
| !! | AAATATTACTGAAAAAAAAA+AGG | + | chr7_3:58679877-58679896 | Msa1112770:three_prime_UTR | 10.0% |
| !!! | CTTTTCTTGAAATATTAATA+TGG | + | chr7_3:58676398-58676417 | Msa1112770:intron | 15.0% |
| !!! | ATTGAATTTATACACTTTTT+AGG | + | chr7_3:58676495-58676514 | Msa1112770:intron | 15.0% |
| !!! | TTGAATTTATACACTTTTTA+GGG | + | chr7_3:58676496-58676515 | Msa1112770:intron | 15.0% |
| !!! | TTGTTATGTTTTTCAAATTT+CGG | + | chr7_3:58676768-58676787 | Msa1112770:intron | 15.0% |
| !!! | TCTTTTATCTTAAATTTACT+TGG | + | chr7_3:58676793-58676812 | Msa1112770:intron | 15.0% |
| !!! | TGTTTAACTTATAAAAAATC+CGG | - | chr7_3:58677058-58677077 | None:intergenic | 15.0% |
| !!! | TTTTAATTAAATTTCTCTCT+AGG | + | chr7_3:58677134-58677153 | Msa1112770:intron | 15.0% |
| !!! | TTTATTAAATTTTATTCCCA+GGG | - | chr7_3:58678061-58678080 | None:intergenic | 15.0% |
| !! | TATATTAACAAATTTCTACA+TGG | - | chr7_3:58678617-58678636 | None:intergenic | 15.0% |
| !! | ATTCTATGAATTAAGATAAA+GGG | - | chr7_3:58679022-58679041 | None:intergenic | 15.0% |
| !!! | TTAAATGATATTTGTTTTTG+TGG | + | chr7_3:58679298-58679317 | Msa1112770:intron | 15.0% |
| !!! | TAAGATTTTGAGAGAATTTA+TGG | - | chr7_3:58676377-58676396 | None:intergenic | 20.0% |
| !!! | TGATTTTAAATATATGTTGC+TGG | + | chr7_3:58676464-58676483 | Msa1112770:intron | 20.0% |
| !!! | GTTTTCAATAATATGTAGTT+AGG | + | chr7_3:58676702-58676721 | Msa1112770:intron | 20.0% |
| !! | AAAAACATAACAATCTTACT+AGG | - | chr7_3:58676761-58676780 | None:intergenic | 20.0% |
| !! | GGAAATGATTAAAAAAATGA+GGG | + | chr7_3:58676963-58676982 | Msa1112770:intron | 20.0% |
| !!! | TTGATGATTTCAAATCTTTT+AGG | - | chr7_3:58677453-58677472 | None:intergenic | 20.0% |
| !! | ATTATTCCTAGGAATAAATT+TGG | - | chr7_3:58677854-58677873 | None:intergenic | 20.0% |
| !! | TTTAACATTATGATATTCCT+GGG | + | chr7_3:58677933-58677952 | Msa1112770:intron | 20.0% |
| !!! | AAAAATTTTCCCAAAGAAAA+GGG | - | chr7_3:58678033-58678052 | None:intergenic | 20.0% |
| !!! | GTTTATTAAATTTTATTCCC+AGG | - | chr7_3:58678062-58678081 | None:intergenic | 20.0% |
| !! | AATAAACTTGTAACAAACAT+AGG | + | chr7_3:58678075-58678094 | Msa1112770:intron | 20.0% |
| !! | TAATCAAATATAATACTTCC+AGG | - | chr7_3:58678245-58678264 | None:intergenic | 20.0% |
| !! | TCATTGATGAAGAAAATAAA+GGG | - | chr7_3:58678525-58678544 | None:intergenic | 20.0% |
| !! | ATCATTGATGAAGAAAATAA+AGG | - | chr7_3:58678526-58678545 | None:intergenic | 20.0% |
| !! | CATTCTATGAATTAAGATAA+AGG | - | chr7_3:58679023-58679042 | None:intergenic | 20.0% |
| !! | AAGATAAAACAGAAATCATT+AGG | - | chr7_3:58679077-58679096 | None:intergenic | 20.0% |
| !! | ATTTCTTATACTTTCTGATT+GGG | + | chr7_3:58679271-58679290 | Msa1112770:intron | 20.0% |
| !!! | ACTTGTTCATTCTTTTTTTT+TGG | + | chr7_3:58679699-58679718 | Msa1112770:three_prime_UTR | 20.0% |
| !!! | GTTATATTTTTACTAGTAGT+TGG | + | chr7_3:58679818-58679837 | Msa1112770:three_prime_UTR | 20.0% |
| ! | TGAGAGAATTTATGGAAAAT+GGG | - | chr7_3:58676369-58676388 | None:intergenic | 25.0% |
| ! | TTGAGAGAATTTATGGAAAA+TGG | - | chr7_3:58676370-58676389 | None:intergenic | 25.0% |
| !!! | CATATCAAGTTTTATGTATG+TGG | + | chr7_3:58676633-58676652 | Msa1112770:intron | 25.0% |
| ! | TATAATCAAATCCCTAACAT+TGG | - | chr7_3:58676662-58676681 | None:intergenic | 25.0% |
| ! | TAGTTAGGACAAGTATATTT+GGG | + | chr7_3:58676717-58676736 | Msa1112770:intron | 25.0% |
| ! | TTGTGAGTGTATTAACTTAA+TGG | + | chr7_3:58676843-58676862 | Msa1112770:intron | 25.0% |
| !!! | TTCTTGTTATTAGCTTCATA+AGG | + | chr7_3:58676913-58676932 | Msa1112770:intron | 25.0% |
| !! | TTATTAGCTTCATAAGGAAT+TGG | + | chr7_3:58676919-58676938 | Msa1112770:intron | 25.0% |
| !! | TATTAGCTTCATAAGGAATT+GGG | + | chr7_3:58676920-58676939 | Msa1112770:intron | 25.0% |
| ! | GGGAAATGATTAAAAAAATG+AGG | + | chr7_3:58676962-58676981 | Msa1112770:intron | 25.0% |
| ! | AACCTAAAAATGAGTACTAT+AGG | + | chr7_3:58677188-58677207 | Msa1112770:intron | 25.0% |
| !!! | TACCTATAGTACTCATTTTT+AGG | - | chr7_3:58677193-58677212 | None:intergenic | 25.0% |
| ! | ACTATAGGTAAAAGAATGAT+TGG | + | chr7_3:58677203-58677222 | Msa1112770:intron | 25.0% |
| ! | CTATAGGTAAAAGAATGATT+GGG | + | chr7_3:58677204-58677223 | Msa1112770:intron | 25.0% |
| !!! | TTCAAATCTTTTAGGTTTTC+AGG | - | chr7_3:58677445-58677464 | None:intergenic | 25.0% |
| ! | TTGAAATCATCAAAGCAAAT+AGG | + | chr7_3:58677460-58677479 | Msa1112770:intron | 25.0% |
| ! | TCTTAAAACGAAGTAAGAAA+CGG | + | chr7_3:58677652-58677671 | Msa1112770:intron | 25.0% |
| ! | AGTTTACCAAATTTATTCCT+AGG | + | chr7_3:58677845-58677864 | Msa1112770:intron | 25.0% |
| !!! | CATCTTTTTTCTAAATACCT+TGG | - | chr7_3:58677909-58677928 | None:intergenic | 25.0% |
| ! | GTTTAACATTATGATATTCC+TGG | + | chr7_3:58677932-58677951 | Msa1112770:intron | 25.0% |
| !! | GAAAAATTTTCCCAAAGAAA+AGG | - | chr7_3:58678034-58678053 | None:intergenic | 25.0% |
| ! | TATACAAATTCTCACAAAGA+AGG | - | chr7_3:58678322-58678341 | None:intergenic | 25.0% |
| ! | ATTTAGCAAATAAGTACAAG+TGG | - | chr7_3:58678551-58678570 | None:intergenic | 25.0% |
| !! | GAAATTTGAGTAAGTTTGTT+AGG | + | chr7_3:58678643-58678662 | Msa1112770:intron | 25.0% |
| !! | AAATTTTTGTAGAAAAACCG+CGG | - | chr7_3:58678704-58678723 | None:intergenic | 25.0% |
| !! | GTTTTTCTACAAAAATTTGC+TGG | + | chr7_3:58678706-58678725 | Msa1112770:intron | 25.0% |
| ! | TCAGTCAATCTTAACTATTA+GGG | - | chr7_3:58678989-58679008 | None:intergenic | 25.0% |
| ! | ATCAGTCAATCTTAACTATT+AGG | - | chr7_3:58678990-58679009 | None:intergenic | 25.0% |
| !! | TGATTTCTGTTTTATCTTGA+AGG | + | chr7_3:58679079-58679098 | Msa1112770:intron | 25.0% |
| ! | GGAAATATTATATCATCAAC+AGG | - | chr7_3:58679218-58679237 | None:intergenic | 25.0% |
| ! | AGTATAAGAAATCTTAGACA+TGG | - | chr7_3:58679263-58679282 | None:intergenic | 25.0% |
| ! | GATTTCTTATACTTTCTGAT+TGG | + | chr7_3:58679270-58679289 | Msa1112770:intron | 25.0% |
| !!! | ATGATATTTGTTTTTGTGGT+TGG | + | chr7_3:58679302-58679321 | Msa1112770:intron | 25.0% |
| !! | GAATGAACAAGTTTTCAAAT+GGG | - | chr7_3:58679691-58679710 | None:intergenic | 25.0% |
| !! | AGAATGAACAAGTTTTCAAA+TGG | - | chr7_3:58679692-58679711 | None:intergenic | 25.0% |
| !! | GATTTTGATGTAATTGGAAG+TGG | - | chr7_3:58676291-58676310 | None:intergenic | 30.0% |
| AGAGAATTTATGGAAAATGG+GGG | - | chr7_3:58676367-58676386 | None:intergenic | 30.0% | |
| GAGAGAATTTATGGAAAATG+GGG | - | chr7_3:58676368-58676387 | None:intergenic | 30.0% | |
| !!! | ATGGTTGTTGTTTTCTTATC+TGG | + | chr7_3:58676417-58676436 | Msa1112770:intron | 30.0% |
| !!! | TGGTTGTTGTTTTCTTATCT+GGG | + | chr7_3:58676418-58676437 | Msa1112770:intron | 30.0% |
| TGATATGAATAACACTACTG+TGG | - | chr7_3:58676620-58676639 | None:intergenic | 30.0% | |
| AGGGATTTGATTATAGCTTT+AGG | + | chr7_3:58676667-58676686 | Msa1112770:intron | 30.0% | |
| !!! | TAGCTTTAGGAGATTTTCAT+TGG | + | chr7_3:58676680-58676699 | Msa1112770:intron | 30.0% |
| GTAGTTAGGACAAGTATATT+TGG | + | chr7_3:58676716-58676735 | Msa1112770:intron | 30.0% | |
| AGTTAGGACAAGTATATTTG+GGG | + | chr7_3:58676718-58676737 | Msa1112770:intron | 30.0% | |
| ! | TGTTCCATCGTTTTATGTAT+CGG | + | chr7_3:58676818-58676837 | Msa1112770:intron | 30.0% |
| ATCAAAACTCAACCTAACTT+GGG | - | chr7_3:58676878-58676897 | None:intergenic | 30.0% | |
| TATCAAAACTCAACCTAACT+TGG | - | chr7_3:58676879-58676898 | None:intergenic | 30.0% | |
| !!! | TTAGGTTGAGTTTTGATACT+TGG | + | chr7_3:58676881-58676900 | Msa1112770:intron | 30.0% |
| TATGTATTTAGTCGTGGATT+GGG | + | chr7_3:58677324-58677343 | Msa1112770:intron | 30.0% | |
| GAACTTCATAACTTCTTACT+AGG | + | chr7_3:58677566-58677585 | Msa1112770:intron | 30.0% | |
| TAATTCCTAAAGCTTGGATT+TGG | - | chr7_3:58677718-58677737 | None:intergenic | 30.0% | |
| !! | AAATCCAAGCTTTAGGAATT+AGG | + | chr7_3:58677717-58677736 | Msa1112770:intron | 30.0% |
| ! | TATTCTTTTCAACTCTACGA+AGG | - | chr7_3:58677783-58677802 | None:intergenic | 30.0% |
| TTCCTAGGAATAATATTCCT+TGG | + | chr7_3:58677860-58677879 | Msa1112770:intron | 30.0% | |
| TTCCAAGGAATATTATTCCT+AGG | - | chr7_3:58677865-58677884 | None:intergenic | 30.0% | |
| ! | GGAAAATTTTTCTATTCCCT+GGG | + | chr7_3:58678042-58678061 | Msa1112770:intron | 30.0% |
| GAAGCAAAAGGGATTTATAT+TGG | - | chr7_3:58678346-58678365 | None:intergenic | 30.0% | |
| AACCAATAAGTGAAGCAAAA+GGG | - | chr7_3:58678357-58678376 | None:intergenic | 30.0% | |
| !! | TATTGGTTCTCTATGGAATT+TGG | + | chr7_3:58678369-58678388 | Msa1112770:intron | 30.0% |
| !! | GAGTAAGTTTGTTAGGATAA+AGG | + | chr7_3:58678650-58678669 | Msa1112770:intron | 30.0% |
| ! | GATAAAGGATGAAGTTTTCA+AGG | + | chr7_3:58678665-58678684 | Msa1112770:intron | 30.0% |
| AAGAAATACTCAATGCGTAA+TGG | - | chr7_3:58678829-58678848 | None:intergenic | 30.0% | |
| AACATGTATTGAACTATCGA+AGG | + | chr7_3:58678959-58678978 | Msa1112770:intron | 30.0% | |
| AACAGAAATCATTAGGAACT+TGG | - | chr7_3:58679070-58679089 | None:intergenic | 30.0% | |
| ! | AATTTTTGTAGTCAGGAGTT+TGG | - | chr7_3:58679109-58679128 | None:intergenic | 30.0% |
| ATGTTGTAAGATCTTGATTG+CGG | - | chr7_3:58679658-58679677 | None:intergenic | 30.0% | |
| ! | TTGGTTGAATGAACAAGTTT+TGG | - | chr7_3:58679728-58679747 | None:intergenic | 30.0% |
| ! | AAACTGATACGCTATACTTT+TGG | - | chr7_3:58679747-58679766 | None:intergenic | 30.0% |
| ATTAAATTCAGCAAGAGACT+AGG | + | chr7_3:58679785-58679804 | Msa1112770:three_prime_UTR | 30.0% | |
| ATCCAACATTATGTATCTCT+AGG | - | chr7_3:58679973-58679992 | None:intergenic | 30.0% | |
| GAATTGGAATCAGATTCGAA+TGG | - | chr7_3:58676269-58676288 | None:intergenic | 35.0% | |
| GATGTAATTGGAAGTGGAAT+TGG | - | chr7_3:58676285-58676304 | None:intergenic | 35.0% | |
| !! | AGCACGGATTTTGATGTAAT+TGG | - | chr7_3:58676297-58676316 | None:intergenic | 35.0% |
| ! | TATTTTACCTGGATGAACTG+GGG | - | chr7_3:58676338-58676357 | None:intergenic | 35.0% |
| ! | GTATTTTACCTGGATGAACT+GGG | - | chr7_3:58676339-58676358 | None:intergenic | 35.0% |
| ! | AGTATTTTACCTGGATGAAC+TGG | - | chr7_3:58676340-58676359 | None:intergenic | 35.0% |
| !! | GTATGTGAAAGTTTCTAGCT+TGG | + | chr7_3:58676563-58676582 | Msa1112770:intron | 35.0% |
| TGTATGTGGTTACCAATGTT+AGG | + | chr7_3:58676647-58676666 | Msa1112770:intron | 35.0% | |
| GTATGTGGTTACCAATGTTA+GGG | + | chr7_3:58676648-58676667 | Msa1112770:intron | 35.0% | |
| GTTAGGACAAGTATATTTGG+GGG | + | chr7_3:58676719-58676738 | Msa1112770:intron | 35.0% | |
| AATGCCGATACATAAAACGA+TGG | - | chr7_3:58676825-58676844 | None:intergenic | 35.0% | |
| ! | CATAAGGAATTGGGTTGTTA+TGG | + | chr7_3:58676929-58676948 | Msa1112770:intron | 35.0% |
| AATCTAGTGACAGAATGTCT+GGG | + | chr7_3:58677243-58677262 | Msa1112770:intron | 35.0% | |
| CAATCCACGACTAAATACAT+AGG | - | chr7_3:58677325-58677344 | None:intergenic | 35.0% | |
| CTATGTATTTAGTCGTGGAT+TGG | + | chr7_3:58677323-58677342 | Msa1112770:intron | 35.0% | |
| ! | ATGTATTTAGTCGTGGATTG+GGG | + | chr7_3:58677325-58677344 | Msa1112770:intron | 35.0% |
| ! | TAATAGGCAATAGCGTTTTG+GGG | - | chr7_3:58677366-58677385 | None:intergenic | 35.0% |
| ! | CTAATAGGCAATAGCGTTTT+GGG | - | chr7_3:58677367-58677386 | None:intergenic | 35.0% |
| TACAGAGAGGAAAACCTAAT+AGG | - | chr7_3:58677382-58677401 | None:intergenic | 35.0% | |
| !! | ATTGCATCGATTATACAGAG+AGG | - | chr7_3:58677395-58677414 | None:intergenic | 35.0% |
| CAATCCTCTATTAGACATGA+AGG | + | chr7_3:58677411-58677430 | Msa1112770:intron | 35.0% | |
| TTCACCTTCATGTCTAATAG+AGG | - | chr7_3:58677418-58677437 | None:intergenic | 35.0% | |
| AACTTCTTACTAGGTAGAGT+CGG | + | chr7_3:58677575-58677594 | Msa1112770:intron | 35.0% | |
| AAACGGCTGAAAAAATGTTC+TGG | + | chr7_3:58677669-58677688 | Msa1112770:intron | 35.0% | |
| TACTCCTAATTCCTAAAGCT+TGG | - | chr7_3:58677724-58677743 | None:intergenic | 35.0% | |
| ! | TAGTGGCAAAAAAGCATAAC+TGG | - | chr7_3:58677757-58677776 | None:intergenic | 35.0% |
| GAAAAGAATACCTCCAACTT+TGG | + | chr7_3:58677793-58677812 | Msa1112770:intron | 35.0% | |
| TATTCCTTGGAACATAACGA+TGG | + | chr7_3:58677873-58677892 | Msa1112770:intron | 35.0% | |
| ATTCCTTGGAACATAACGAT+GGG | + | chr7_3:58677874-58677893 | Msa1112770:intron | 35.0% | |
| ACGATGGGAATATTATTCCA+AGG | + | chr7_3:58677889-58677908 | Msa1112770:intron | 35.0% | |
| TTCCTGGGAACCATAAAAAT+AGG | + | chr7_3:58677948-58677967 | Msa1112770:intron | 35.0% | |
| !!! | TTCCTATTTTTATGGTTCCC+AGG | - | chr7_3:58677953-58677972 | None:intergenic | 35.0% |
| TGAATTTATTCCCATCTCCA+TGG | + | chr7_3:58677993-58678012 | Msa1112770:intron | 35.0% | |
| GAATTTATTCCCATCTCCAT+GGG | + | chr7_3:58677994-58678013 | Msa1112770:intron | 35.0% | |
| AATAAAGTTCCCATGGAGAT+GGG | - | chr7_3:58678006-58678025 | None:intergenic | 35.0% | |
| ! | TTTATTCCCACCCTTTTCTT+TGG | + | chr7_3:58678020-58678039 | Msa1112770:intron | 35.0% |
| ! | TTATTCCCACCCTTTTCTTT+GGG | + | chr7_3:58678021-58678040 | Msa1112770:intron | 35.0% |
| ! | ATTTTCCCAAAGAAAAGGGT+GGG | - | chr7_3:58678029-58678048 | None:intergenic | 35.0% |
| ! | AATTTTCCCAAAGAAAAGGG+TGG | - | chr7_3:58678030-58678049 | None:intergenic | 35.0% |
| ! | GGGAAAATTTTTCTATTCCC+TGG | + | chr7_3:58678041-58678060 | Msa1112770:intron | 35.0% |
| !! | ATTCCTATCGTTTTATTCCC+AGG | + | chr7_3:58678105-58678124 | Msa1112770:intron | 35.0% |
| ATTCCTGGGAATAAAACGAT+AGG | - | chr7_3:58678111-58678130 | None:intergenic | 35.0% | |
| AGTTATCTTCGTAGATTCCT+GGG | - | chr7_3:58678125-58678144 | None:intergenic | 35.0% | |
| AAGTTATCTTCGTAGATTCC+TGG | - | chr7_3:58678126-58678145 | None:intergenic | 35.0% | |
| TGATAGCATAAGAGAAGGAA+TGG | - | chr7_3:58678177-58678196 | None:intergenic | 35.0% | |
| !! | CATGTTGATAGCATAAGAGA+AGG | - | chr7_3:58678182-58678201 | None:intergenic | 35.0% |
| ! | ATCCCTTTTGCTTCACTTAT+TGG | + | chr7_3:58678352-58678371 | Msa1112770:intron | 35.0% |
| GAACCAATAAGTGAAGCAAA+AGG | - | chr7_3:58678358-58678377 | None:intergenic | 35.0% | |
| !! | CTTCACTTATTGGTTCTCTA+TGG | + | chr7_3:58678362-58678381 | Msa1112770:intron | 35.0% |
| !! | GATGAAGTTTTCAAGGAGAT+GGG | + | chr7_3:58678672-58678691 | Msa1112770:intron | 35.0% |
| AATGCGTAATGGTACAACAA+AGG | - | chr7_3:58678818-58678837 | None:intergenic | 35.0% | |
| GCATTGAGTATTTCTTGTAC+TGG | + | chr7_3:58678833-58678852 | Msa1112770:intron | 35.0% | |
| CTTACTGTCTCGAATTTCAT+TGG | - | chr7_3:58679141-58679160 | None:intergenic | 35.0% | |
| TCTTATACTTTCTGATTGGG+TGG | + | chr7_3:58679274-58679293 | Msa1112770:intron | 35.0% | |
| ACCATAATAGACAGAATCCA+TGG | - | chr7_3:58679575-58679594 | None:intergenic | 35.0% | |
| TGGATTCTGTCTATTATGGT+AGG | + | chr7_3:58679575-58679594 | Msa1112770:CDS | 35.0% | |
| AAAATGACCGAGTAATCCTT+TGG | + | chr7_3:58679622-58679641 | Msa1112770:exon | 35.0% | |
| ! | TGAACAAGTTTTCAAATGGG+CGG | - | chr7_3:58679688-58679707 | None:intergenic | 35.0% |
| ! | CTTTTACCATGAACTCCTAT+TGG | + | chr7_3:58679939-58679958 | Msa1112770:three_prime_UTR | 35.0% |
| CTCCTAGAGATACATAATGT+TGG | + | chr7_3:58679968-58679987 | Msa1112770:three_prime_UTR | 35.0% | |
| !! | TGAAGGAGTTTGTTGAGTTG+CGG | - | chr7_3:58676234-58676253 | None:intergenic | 40.0% |
| AATGGTCTCTTCTTGGTTGA+AGG | - | chr7_3:58676251-58676270 | None:intergenic | 40.0% | |
| AGATTCGAATGGTCTCTTCT+TGG | - | chr7_3:58676258-58676277 | None:intergenic | 40.0% | |
| CAGTAAAGTATGACCACGAA+AGG | - | chr7_3:58677160-58677179 | None:intergenic | 40.0% | |
| CAATCTAGTGACAGAATGTC+TGG | + | chr7_3:58677242-58677261 | Msa1112770:intron | 40.0% | |
| ATCTAGTGACAGAATGTCTG+GGG | + | chr7_3:58677244-58677263 | Msa1112770:intron | 40.0% | |
| ! | CCTAATAGGCAATAGCGTTT+TGG | - | chr7_3:58677368-58677387 | None:intergenic | 40.0% |
| CCAAAACGCTATTGCCTATT+AGG | + | chr7_3:58677365-58677384 | Msa1112770:intron | 40.0% | |
| !! | AGTAAAGAGCATCAGCTGAA+CGG | + | chr7_3:58677487-58677506 | Msa1112770:intron | 40.0% |
| TCGTATGTGTAGAACAGACA+CGG | - | chr7_3:58677548-58677567 | None:intergenic | 40.0% | |
| ACTTCTTACTAGGTAGAGTC+GGG | + | chr7_3:58677576-58677595 | Msa1112770:intron | 40.0% | |
| !! | CAACTCTACGAAGGTTTTAG+TGG | - | chr7_3:58677774-58677793 | None:intergenic | 40.0% |
| AGAATACCTCCAACTTTGGT+TGG | + | chr7_3:58677797-58677816 | Msa1112770:intron | 40.0% | |
| TTAGTGTTGCCAACCAAAGT+TGG | - | chr7_3:58677809-58677828 | None:intergenic | 40.0% | |
| AACTTTGGTTGGCAACACTA+AGG | + | chr7_3:58677808-58677827 | Msa1112770:intron | 40.0% | |
| ACTTTGGTTGGCAACACTAA+GGG | + | chr7_3:58677809-58677828 | Msa1112770:intron | 40.0% | |
| ATTCCCATCGTTATGTTCCA+AGG | - | chr7_3:58677880-58677899 | None:intergenic | 40.0% | |
| GAATAAAGTTCCCATGGAGA+TGG | - | chr7_3:58678007-58678026 | None:intergenic | 40.0% | |
| AAGAGAAGGAATGGCATAAG+AGG | - | chr7_3:58678168-58678187 | None:intergenic | 40.0% | |
| TTTGGATCCATAGTGTCTGA+TGG | + | chr7_3:58678387-58678406 | Msa1112770:intron | 40.0% | |
| GCTAAATATACCCTGTGCTT+TGG | + | chr7_3:58678564-58678583 | Msa1112770:intron | 40.0% | |
| AAATATACCCTGTGCTTTGG+AGG | + | chr7_3:58678567-58678586 | Msa1112770:intron | 40.0% | |
| TACATGGCATGTTCCTAAGA+AGG | - | chr7_3:58678601-58678620 | None:intergenic | 40.0% | |
| !! | GGATGAAGTTTTCAAGGAGA+TGG | + | chr7_3:58678671-58678690 | Msa1112770:intron | 40.0% |
| ! | TCTTTTCTACGATCCAAGTC+AGG | + | chr7_3:58678881-58678900 | Msa1112770:intron | 40.0% |
| ! | GCACTGCAATTTTTGTAGTC+AGG | - | chr7_3:58679116-58679135 | None:intergenic | 40.0% |
| ATGGACATGATGTCATCAAC+AGG | - | chr7_3:58679244-58679263 | None:intergenic | 40.0% | |
| ! | TTCTCTACTTGAGTTTGCTC+CGG | - | chr7_3:58679454-58679473 | None:intergenic | 40.0% |
| !! | TTTCATCACTTTTCCAGCCA+TGG | + | chr7_3:58679555-58679574 | Msa1112770:CDS | 40.0% |
| TAATAGACAGAATCCATGGC+TGG | - | chr7_3:58679571-58679590 | None:intergenic | 40.0% | |
| GCCATGGATTCTGTCTATTA+TGG | + | chr7_3:58679571-58679590 | Msa1112770:CDS | 40.0% | |
| TGTCTATTATGGTAGGACGA+AGG | + | chr7_3:58679582-58679601 | Msa1112770:CDS | 40.0% | |
| GTAGGACGAAGGAACAATTT+CGG | + | chr7_3:58679593-58679612 | Msa1112770:CDS | 40.0% | |
| TAACAGCCAATAGGAGTTCA+TGG | - | chr7_3:58679948-58679967 | None:intergenic | 40.0% | |
| ! | GCTACAGGTACATGTGCTTT+TGG | - | chr7_3:58676206-58676225 | None:intergenic | 45.0% |
| ! | GGGGGTAGTAGTATTTTACC+TGG | - | chr7_3:58676349-58676368 | None:intergenic | 45.0% |
| ! | TTTGGGGGTACACTAAGTTC+TGG | + | chr7_3:58676734-58676753 | Msa1112770:intron | 45.0% |
| TGGTTTGAGAGACCCAAGTT+AGG | + | chr7_3:58676863-58676882 | Msa1112770:intron | 45.0% | |
| ! | GTTGTTATGGCGCAAGTTGA+GGG | + | chr7_3:58676942-58676961 | Msa1112770:intron | 45.0% |
| CCTCTACATACTCTACAGTC+CGG | + | chr7_3:58677036-58677055 | Msa1112770:intron | 45.0% | |
| ATTTCTCTCTAGGCCTTTCG+TGG | + | chr7_3:58677144-58677163 | Msa1112770:intron | 45.0% | |
| TACATAGGCTGGAAAACCTC+AGG | - | chr7_3:58677310-58677329 | None:intergenic | 45.0% | |
| CCACGACTAAATACATAGGC+TGG | - | chr7_3:58677321-58677340 | None:intergenic | 45.0% | |
| CCAGCCTATGTATTTAGTCG+TGG | + | chr7_3:58677318-58677337 | Msa1112770:intron | 45.0% | |
| CGTATGTGTAGAACAGACAC+GGG | - | chr7_3:58677547-58677566 | None:intergenic | 45.0% | |
| GCACACCAAATCCAAGCTTT+AGG | + | chr7_3:58677710-58677729 | Msa1112770:intron | 45.0% | |
| GGAATGGCATAAGAGGCTTA+GGG | - | chr7_3:58678161-58678180 | None:intergenic | 45.0% | |
| AGGAATGGCATAAGAGGCTT+AGG | - | chr7_3:58678162-58678181 | None:intergenic | 45.0% | |
| ATCTCAATCTTTGTCCCCTC+TGG | + | chr7_3:58678216-58678235 | Msa1112770:intron | 45.0% | |
| AATACTTCCAGGCAACCAGA+GGG | - | chr7_3:58678234-58678253 | None:intergenic | 45.0% | |
| TAATACTTCCAGGCAACCAG+AGG | - | chr7_3:58678235-58678254 | None:intergenic | 45.0% | |
| CCAAACTCCATCAGACACTA+TGG | - | chr7_3:58678397-58678416 | None:intergenic | 45.0% | |
| CCATAGTGTCTGATGGAGTT+TGG | + | chr7_3:58678394-58678413 | Msa1112770:intron | 45.0% | |
| TGATGCATCCTCGTAAGAGA+AGG | - | chr7_3:58678766-58678785 | None:intergenic | 45.0% | |
| AGAGTTCACAACACCTGACT+TGG | - | chr7_3:58678897-58678916 | None:intergenic | 45.0% | |
| CATGATGTCATCAACAGGTC+AGG | - | chr7_3:58679239-58679258 | None:intergenic | 45.0% | |
| ACACTAGGGACACATGTTGT+TGG | + | chr7_3:58679511-58679530 | Msa1112770:CDS | 45.0% | |
| ! | GTTGTTGGAGGATCAGCTTT+TGG | + | chr7_3:58679526-58679545 | Msa1112770:CDS | 45.0% |
| ACGAAGGAACAATTTCGGTC+AGG | + | chr7_3:58679598-58679617 | Msa1112770:CDS | 45.0% | |
| CATGGCACCAAAGGATTACT+CGG | - | chr7_3:58679632-58679651 | None:intergenic | 45.0% | |
| ! | CAAGTTTTCAAATGGGCGGA+TGG | - | chr7_3:58679684-58679703 | None:intergenic | 45.0% |
| ! | CTCTAGGAGTAACAGCCAAT+AGG | - | chr7_3:58679957-58679976 | None:intergenic | 45.0% |
| !!! | TTAATTTAATATTTTTTGTA+TGG | - | chr7_3:58679770-58679789 | None:intergenic | 5.0% |
| GAAGGTCACGAACTAGAGCA+CGG | - | chr7_3:58676313-58676332 | None:intergenic | 50.0% | |
| GGTTGTTATGGCGCAAGTTG+AGG | + | chr7_3:58676941-58676960 | Msa1112770:intron | 50.0% | |
| CCGGACTGTAGAGTATGTAG+AGG | - | chr7_3:58677039-58677058 | None:intergenic | 50.0% | |
| GAAAACCTCAGGCTGTGGTT+GGG | - | chr7_3:58677299-58677318 | None:intergenic | 50.0% | |
| TACAATACAACGCGGGTGCA+GGG | - | chr7_3:58677524-58677543 | None:intergenic | 50.0% | |
| ACACGGGTACAATACAACGC+GGG | - | chr7_3:58677531-58677550 | None:intergenic | 50.0% | |
| GACACGGGTACAATACAACG+CGG | - | chr7_3:58677532-58677551 | None:intergenic | 50.0% | |
| GTGTTGCCAACCAAAGTTGG+AGG | - | chr7_3:58677806-58677825 | None:intergenic | 50.0% | |
| GGGTGGGAATAAAGTTCCCA+TGG | - | chr7_3:58678013-58678032 | None:intergenic | 50.0% | |
| ATACTTCCAGGCAACCAGAG+GGG | - | chr7_3:58678233-58678252 | None:intergenic | 50.0% | |
| CACAAAGAAGGCAGCTGATC+AGG | - | chr7_3:58678310-58678329 | None:intergenic | 50.0% | |
| CCTAGATCCTCCAAAGCACA+GGG | - | chr7_3:58678577-58678596 | None:intergenic | 50.0% | |
| ACCTAGATCCTCCAAAGCAC+AGG | - | chr7_3:58678578-58678597 | None:intergenic | 50.0% | |
| GGAGGATCTAGGTCCTTCTT+AGG | + | chr7_3:58678585-58678604 | Msa1112770:intron | 50.0% | |
| AAGGAGATGGGTAGTTTCCG+CGG | + | chr7_3:58678684-58678703 | Msa1112770:intron | 50.0% | |
| AAGCGCATCCTTCTCTTACG+AGG | + | chr7_3:58678755-58678774 | Msa1112770:intron | 50.0% | |
| TGGAAGACAGGCAGACACTA+GGG | + | chr7_3:58679497-58679516 | Msa1112770:CDS | 50.0% | |
| CTAGGGACACATGTTGTTGG+AGG | + | chr7_3:58679514-58679533 | Msa1112770:CDS | 50.0% | |
| ! | TTGGAGGATCAGCTTTTGGC+TGG | + | chr7_3:58679530-58679549 | Msa1112770:CDS | 50.0% |
| !! | CGAGTAATCCTTTGGTGCCA+TGG | + | chr7_3:58679630-58679649 | Msa1112770:exon | 50.0% |
| !! | GGAGTTTGTTGAGTTGCGGC+AGG | - | chr7_3:58676230-58676249 | None:intergenic | 55.0% |
| ! | GTCACTGAAAAGCGTAGCGC+GGG | - | chr7_3:58677274-58677293 | None:intergenic | 55.0% |
| ! | GGTCACTGAAAAGCGTAGCG+CGG | - | chr7_3:58677275-58677294 | None:intergenic | 55.0% |
| GGAAAACCTCAGGCTGTGGT+TGG | - | chr7_3:58677300-58677319 | None:intergenic | 55.0% | |
| GTACAATACAACGCGGGTGC+AGG | - | chr7_3:58677525-58677544 | None:intergenic | 55.0% | |
| TACTAGGTAGAGTCGGGTGC+AGG | + | chr7_3:58677582-58677601 | Msa1112770:intron | 55.0% | |
| !! | CCCTGTGCTTTGGAGGATCT+AGG | + | chr7_3:58678574-58678593 | Msa1112770:intron | 55.0% |
| ! | GCCTCCACGTTTCAAGTCTC+CGG | + | chr7_3:58679432-58679451 | Msa1112770:CDS | 55.0% |
| TCCGGAGACTTGAAACGTGG+AGG | - | chr7_3:58679436-58679455 | None:intergenic | 55.0% | |
| TGCTCCGGAGACTTGAAACG+TGG | - | chr7_3:58679439-58679458 | None:intergenic | 55.0% | |
| ! | AGCTTTTGCTCGACCACCTG+TGG | + | chr7_3:58679474-58679493 | Msa1112770:CDS | 55.0% |
| ! | TTTTGCTCGACCACCTGTGG+TGG | + | chr7_3:58679477-58679496 | Msa1112770:CDS | 55.0% |
| GTGGAAGACAGGCAGACACT+AGG | + | chr7_3:58679496-58679515 | Msa1112770:CDS | 55.0% | |
| AGATCTTGATTGCGGCGCCA+TGG | - | chr7_3:58679650-58679669 | None:intergenic | 55.0% | |
| TGAGTTGCGGCAGGAGCTAC+AGG | - | chr7_3:58676221-58676240 | None:intergenic | 60.0% | |
| CCTGGATGAACTGGGGACGA+AGG | - | chr7_3:58676331-58676350 | None:intergenic | 60.0% | |
| CCTTCGTCCCCAGTTCATCC+AGG | + | chr7_3:58676328-58676347 | Msa1112770:CDS | 60.0% | |
| AACCTCAGGCTGTGGTTGGG+AGG | - | chr7_3:58677296-58677315 | None:intergenic | 60.0% | |
| GGCTGGAAAACCTCAGGCTG+TGG | - | chr7_3:58677304-58677323 | None:intergenic | 60.0% | |
| CTTTGTCCCCTCTGGTTGCC+TGG | + | chr7_3:58678224-58678243 | Msa1112770:intron | 60.0% | |
| ! | GACCACCTGTGGTGGAAGAC+AGG | + | chr7_3:58679485-58679504 | Msa1112770:CDS | 60.0% |
| TGCCTGTCTTCCACCACAGG+TGG | - | chr7_3:58679490-58679509 | None:intergenic | 60.0% | |
| GTCTGCCTGTCTTCCACCAC+AGG | - | chr7_3:58679493-58679512 | None:intergenic | 60.0% | |
| GACCTCCCAACCACAGCCTG+AGG | + | chr7_3:58677291-58677310 | Msa1112770:intron | 65.0% | |
| TTGCGGCGCCATGGCACCAA+AGG | - | chr7_3:58679641-58679660 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_3 | gene | 58676194 | 58680001 | 58676194 | ID=Msa1112770;Name=Msa1112770 |
| chr7_3 | mRNA | 58676194 | 58680001 | 58676194 | ID=Msa1112770-mRNA-1;Parent=Msa1112770;Name=Msa1112770-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0|1|0.66|1|1|1|3|365|160 |
| chr7_3 | exon | 58676194 | 58676349 | 58676194 | ID=Msa1112770-mRNA-1:exon:12896;Parent=Msa1112770-mRNA-1 |
| chr7_3 | exon | 58679101 | 58679155 | 58679101 | ID=Msa1112770-mRNA-1:exon:12897;Parent=Msa1112770-mRNA-1 |
| chr7_3 | exon | 58679365 | 58680001 | 58679365 | ID=Msa1112770-mRNA-1:exon:12898;Parent=Msa1112770-mRNA-1 |
| chr7_3 | CDS | 58676194 | 58676349 | 58676194 | ID=Msa1112770-mRNA-1:cds;Parent=Msa1112770-mRNA-1 |
| chr7_3 | CDS | 58679101 | 58679155 | 58679101 | ID=Msa1112770-mRNA-1:cds;Parent=Msa1112770-mRNA-1 |
| chr7_3 | CDS | 58679365 | 58679636 | 58679365 | ID=Msa1112770-mRNA-1:cds;Parent=Msa1112770-mRNA-1 |
| chr7_3 | three_prime_UTR | 58679637 | 58680001 | 58679637 | ID=Msa1112770-mRNA-1:three_prime_utr;Parent=Msa1112770-mRNA-1 |
| Gene Sequence |
| Protein sequence |
