Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0101820 | RDY05145.1 | 70.648 | 494 | 52 | 4 | 25 | 425 | 23 | 516 | 0.0 | 649 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0101820 | sp|Q8GZD4|NAT3_ARATH | 54.832 | 507 | 126 | 6 | 22 | 425 | 23 | 529 | 1.55e-171 | 494 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0101820 | A0A371HQT5 | 70.648 | 494 | 52 | 4 | 25 | 425 | 23 | 516 | 0.0 | 649 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0101820 | Msa0473270 | -0.803327 | 3.675548e-49 | -8.615850e-47 |
| Msa0101820 | Msa0638930 | 0.818110 | 2.325026e-52 | -8.615850e-47 |
| Msa0101820 | Msa1112770 | -0.810243 | 1.269968e-50 | -8.615850e-47 |
| Msa0101820 | Msa1124010 | -0.823357 | 1.447123e-53 | -8.615850e-47 |
| Msa0101820 | Msa1173470 | -0.837854 | 4.065593e-57 | -8.615850e-47 |
| Msa0101820 | Msa1388510 | -0.802912 | 4.479816e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0101820 | MtrunA17_Chr1g0154001 | 78.937 | 527 | 9 | 5 | 1 | 425 | 1 | 527 | 0.0 | 787 |
| Msa0101820 | MtrunA17_Chr8g0379171 | 46.856 | 493 | 160 | 6 | 35 | 425 | 12 | 504 | 1.17e-143 | 419 |
| Msa0101820 | MtrunA17_Chr3g0119521 | 47.059 | 493 | 158 | 7 | 36 | 425 | 8 | 500 | 2.57e-141 | 413 |
| Msa0101820 | MtrunA17_Chr2g0284061 | 44.309 | 492 | 172 | 5 | 36 | 425 | 13 | 504 | 6.04e-139 | 407 |
| Msa0101820 | MtrunA17_Chr4g0059331 | 40.154 | 518 | 194 | 7 | 12 | 425 | 7 | 512 | 1.69e-119 | 358 |
| Msa0101820 | MtrunA17_Chr3g0117941 | 40.891 | 494 | 188 | 7 | 36 | 425 | 19 | 512 | 3.27e-119 | 357 |
| Msa0101820 | MtrunA17_Chr8g0364611 | 40.974 | 493 | 185 | 7 | 38 | 425 | 22 | 513 | 3.30e-116 | 350 |
| Msa0101820 | MtrunA17_Chr5g0414131 | 38.627 | 510 | 205 | 7 | 21 | 425 | 12 | 518 | 5.92e-113 | 342 |
| Msa0101820 | MtrunA17_Chr1g0207021 | 39.798 | 495 | 190 | 8 | 36 | 425 | 16 | 507 | 4.90e-108 | 328 |
| Msa0101820 | MtrunA17_Chr3g0134911 | 42.424 | 429 | 163 | 7 | 32 | 381 | 39 | 462 | 3.38e-100 | 310 |
| Msa0101820 | MtrunA17_Chr5g0405471 | 38.492 | 504 | 194 | 9 | 38 | 425 | 39 | 542 | 3.43e-100 | 309 |
| Msa0101820 | MtrunA17_Chr8g0367361 | 27.880 | 434 | 219 | 5 | 42 | 381 | 238 | 671 | 1.04e-54 | 194 |
| Msa0101820 | MtrunA17_Chr2g0320981 | 29.954 | 434 | 210 | 6 | 42 | 381 | 146 | 579 | 7.27e-54 | 190 |
| Msa0101820 | MtrunA17_Chr4g0027121 | 28.864 | 440 | 218 | 6 | 37 | 381 | 148 | 587 | 5.13e-50 | 179 |
| Msa0101820 | MtrunA17_Chr5g0412181 | 27.650 | 434 | 220 | 5 | 42 | 381 | 167 | 600 | 1.02e-47 | 173 |
| Msa0101820 | MtrunA17_Chr2g0332871 | 31.008 | 387 | 191 | 9 | 63 | 381 | 166 | 544 | 1.27e-45 | 167 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0101820 | AT2G26510.1 | 54.832 | 507 | 126 | 6 | 22 | 425 | 23 | 529 | 1.57e-172 | 494 |
| Msa0101820 | AT2G34190.1 | 45.325 | 492 | 167 | 5 | 36 | 425 | 13 | 504 | 7.16e-141 | 413 |
| Msa0101820 | AT2G05760.1 | 45.842 | 493 | 164 | 6 | 36 | 425 | 8 | 500 | 8.74e-139 | 407 |
| Msa0101820 | AT2G26510.3 | 56.284 | 366 | 91 | 3 | 22 | 318 | 23 | 388 | 6.58e-122 | 360 |
| Msa0101820 | AT2G26510.2 | 55.556 | 369 | 95 | 3 | 22 | 321 | 23 | 391 | 2.44e-121 | 359 |
| Msa0101820 | AT5G62890.1 | 39.575 | 518 | 197 | 7 | 12 | 425 | 7 | 512 | 3.03e-117 | 353 |
| Msa0101820 | AT5G62890.2 | 39.575 | 518 | 197 | 7 | 12 | 425 | 7 | 512 | 3.03e-117 | 353 |
| Msa0101820 | AT5G62890.3 | 39.575 | 518 | 197 | 7 | 12 | 425 | 7 | 512 | 3.03e-117 | 353 |
| Msa0101820 | AT1G60030.1 | 38.824 | 510 | 203 | 8 | 21 | 425 | 13 | 518 | 1.10e-114 | 346 |
| Msa0101820 | AT5G62890.4 | 41.037 | 463 | 183 | 5 | 12 | 396 | 7 | 457 | 4.56e-111 | 335 |
| Msa0101820 | AT1G10540.1 | 38.012 | 513 | 206 | 9 | 21 | 425 | 11 | 519 | 5.89e-110 | 334 |
| Msa0101820 | AT5G49990.2 | 40.688 | 494 | 189 | 6 | 36 | 425 | 15 | 508 | 9.37e-109 | 331 |
| Msa0101820 | AT5G49990.3 | 40.688 | 494 | 189 | 6 | 36 | 425 | 15 | 508 | 9.37e-109 | 331 |
| Msa0101820 | AT5G49990.1 | 40.688 | 494 | 189 | 6 | 36 | 425 | 15 | 508 | 9.37e-109 | 331 |
| Msa0101820 | AT5G49990.4 | 40.688 | 494 | 189 | 6 | 36 | 425 | 15 | 508 | 9.37e-109 | 331 |
| Msa0101820 | AT1G49960.1 | 40.447 | 492 | 189 | 6 | 38 | 425 | 15 | 506 | 7.17e-101 | 310 |
| Msa0101820 | AT1G65550.1 | 35.010 | 497 | 214 | 7 | 38 | 425 | 25 | 521 | 5.01e-92 | 288 |
| Msa0101820 | AT1G10540.2 | 37.368 | 380 | 160 | 7 | 21 | 327 | 11 | 385 | 1.36e-76 | 243 |
| Msa0101820 | AT5G25420.1 | 33.820 | 411 | 148 | 8 | 38 | 381 | 37 | 390 | 3.02e-66 | 218 |
| Msa0101820 | AT2G27810.1 | 29.817 | 436 | 211 | 7 | 41 | 381 | 167 | 602 | 1.99e-47 | 173 |
| Msa0101820 | AT2G27810.4 | 29.817 | 436 | 211 | 7 | 41 | 381 | 167 | 602 | 2.82e-47 | 173 |
| Msa0101820 | AT4G38050.1 | 28.868 | 433 | 214 | 5 | 43 | 381 | 175 | 607 | 2.82e-44 | 164 |
| Msa0101820 | AT2G27810.2 | 29.078 | 423 | 205 | 7 | 41 | 368 | 167 | 589 | 4.40e-42 | 157 |
| Msa0101820 | AT2G27810.3 | 28.650 | 363 | 173 | 5 | 41 | 317 | 167 | 529 | 1.94e-32 | 129 |
Find 125 sgRNAs with CRISPR-Local
Find 282 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCGCTGCAGCCAGGCTTTC+TGG | 0.090874 | 1_3:+8480391 | Msa0101820:CDS |
| TTATCTGCATTGCCGTTATT+TGG | 0.173804 | 1_3:+8479456 | Msa0101820:CDS |
| GGACCACCACCTCAGAATTT+TGG | 0.200219 | 1_3:+8477546 | Msa0101820:CDS |
| TTCAAGGCTTCCGGTGATTA+TGG | 0.205728 | 1_3:+8478440 | Msa0101820:CDS |
| GCCGCTATCCTTACCGTTGC+TGG | 0.267986 | 1_3:+8479485 | Msa0101820:CDS |
| CAGCCGAAGCATCGGGCTTC+AGG | 0.280020 | 1_3:+8480441 | Msa0101820:CDS |
| CTATCTCCTGCAGCTGCTAC+TGG | 0.282930 | 1_3:+8481240 | Msa0101820:intron |
| TTCAAAGCTAGCCATGTCTT+TGG | 0.294823 | 1_3:+8479968 | Msa0101820:intron |
| TTCAGACTTGGTTTGGTTCA+AGG | 0.300502 | 1_3:+8478424 | Msa0101820:intron |
| TTCGGCTTAACCTTGTTTCT+CGG | 0.314131 | 1_3:+8481315 | Msa0101820:CDS |
| TGCAGCTGAAGCATTGCTTT+TGG | 0.315118 | 1_3:+8478073 | Msa0101820:intron |
| TCTGTCCACAGCTGTTTGTT+TGG | 0.324863 | 1_3:-8481716 | None:intergenic |
| CAGTATATAGCAGCGAATAT+TGG | 0.336373 | 1_3:-8481118 | None:intergenic |
| TTGGTTTGGTTCAAGGCTTC+CGG | 0.345806 | 1_3:+8478431 | Msa0101820:CDS |
| TATCTGCATTGCCGTTATTT+GGG | 0.347060 | 1_3:+8479457 | Msa0101820:CDS |
| TACCACAGGCACAATGCTAA+TGG | 0.353202 | 1_3:-8479094 | None:intergenic |
| TCAAGGCTTCCGGTGATTAT+GGG | 0.354222 | 1_3:+8478441 | Msa0101820:CDS |
| GCATCCATTCAAATCCTTCA+TGG | 0.366156 | 1_3:+8477625 | Msa0101820:CDS |
| AAGTTACCTTGTACCTCAAA+TGG | 0.374913 | 1_3:+8478142 | Msa0101820:CDS |
| GAAAACATAGATATTCCTTA+TGG | 0.375416 | 1_3:-8481295 | None:intergenic |
| ATGTCTATTTCAGGTAAATT+CGG | 0.375930 | 1_3:+8481070 | Msa0101820:intron |
| CATCCACCATTGGTTCTAAC+TGG | 0.379887 | 1_3:-8481390 | None:intergenic |
| AACGTAGTAACCTTAATAAC+TGG | 0.384182 | 1_3:+8477222 | Msa0101820:five_prime_UTR |
| GAGAGGAATTGATGCGAAAA+AGG | 0.386029 | 1_3:-8481095 | None:intergenic |
| AGTATATAGCAGCGAATATT+GGG | 0.387392 | 1_3:-8481117 | None:intergenic |
| GGCATCTGTGGTTCTGTTGT+TGG | 0.394207 | 1_3:+8480577 | Msa0101820:CDS |
| CGGACTCGGACTGTTCAATA+GGG | 0.394425 | 1_3:+8479125 | Msa0101820:CDS |
| TCGGACTCGGACTGTTCAAT+AGG | 0.398912 | 1_3:+8479124 | Msa0101820:CDS |
| TCAAAGCTAGCCATGTCTTT+GGG | 0.399121 | 1_3:+8479969 | Msa0101820:intron |
| CCTGAACTGACGGTGGTGCT+TGG | 0.414463 | 1_3:-8477512 | None:intergenic |
| GACTTTCAAGGGGTCCCACT+TGG | 0.421667 | 1_3:+8477568 | Msa0101820:CDS |
| GTGGTATGTGTGGTCGGACT+CGG | 0.424754 | 1_3:+8479111 | Msa0101820:CDS |
| CAGCACTACATTGTGATGCT+TGG | 0.426352 | 1_3:+8478101 | Msa0101820:CDS |
| ACATTGCTTCAGACTTGGTT+TGG | 0.426916 | 1_3:+8478417 | Msa0101820:intron |
| TCGGCTTAACCTTGTTTCTC+GGG | 0.432455 | 1_3:+8481316 | Msa0101820:CDS |
| ACATGACTCCCACCCATTTG+AGG | 0.442621 | 1_3:-8478155 | None:intergenic |
| TAGCCATGTCTTTGGGATGA+TGG | 0.448637 | 1_3:+8479976 | Msa0101820:CDS |
| GGGTGTTGCACCAGAAAGCC+TGG | 0.450632 | 1_3:-8480401 | None:intergenic |
| GGTGGGTTCCTTTCCAGAAA+AGG | 0.452846 | 1_3:+8481749 | Msa0101820:CDS |
| CCAAGCACCACCGTCAGTTC+AGG | 0.456536 | 1_3:+8477512 | Msa0101820:CDS |
| ACCACAGGCACAATGCTAAT+GGG | 0.456756 | 1_3:-8479093 | None:intergenic |
| ATGTGCTCAGCCGAAGCATC+GGG | 0.457152 | 1_3:+8480434 | Msa0101820:CDS |
| TGAGGTGGTGGTCCCGGTGG+CGG | 0.457958 | 1_3:-8477537 | None:intergenic |
| TCTACTGATCATAACACAAC+AGG | 0.458112 | 1_3:+8479296 | Msa0101820:CDS |
| TACACAATTAGAACAATTCA+AGG | 0.469316 | 1_3:+8478856 | Msa0101820:CDS |
| CTTGCAGATTGTGTGCAGAT+TGG | 0.472382 | 1_3:+8479258 | Msa0101820:CDS |
| AGCTGAAGAAGCTGTTCAGC+TGG | 0.475988 | 1_3:-8477594 | None:intergenic |
| TTGCAAATAACAATTCCATA+AGG | 0.480068 | 1_3:+8481280 | Msa0101820:CDS |
| GTCAGTTCAGGCACCGCCAC+CGG | 0.482612 | 1_3:+8477524 | Msa0101820:CDS |
| TATCTCCTGCAGCTGCTACT+GGG | 0.483276 | 1_3:+8481241 | Msa0101820:intron |
| TCACCTGAAGCCCGATGCTT+CGG | 0.483967 | 1_3:-8480444 | None:intergenic |
| TCCCATTAGCATTGTGCCTG+TGG | 0.489133 | 1_3:+8479092 | Msa0101820:CDS |
| GGCATTAGCATGCTGATTGA+AGG | 0.489200 | 1_3:+8480556 | Msa0101820:CDS |
| CATGTGCTCAGCCGAAGCAT+CGG | 0.492139 | 1_3:+8480433 | Msa0101820:CDS |
| CTAACTGGACCATGACCATC+AGG | 0.492436 | 1_3:-8481375 | None:intergenic |
| GCTGAGCACATGTGCAGGAG+GGG | 0.501725 | 1_3:-8480422 | None:intergenic |
| CGGCTGAGCACATGTGCAGG+AGG | 0.508125 | 1_3:-8480424 | None:intergenic |
| AAATTCTGAGGTGGTGGTCC+CGG | 0.508298 | 1_3:-8477543 | None:intergenic |
| AGCCATGTCTTTGGGATGAT+GGG | 0.513720 | 1_3:+8479977 | Msa0101820:CDS |
| CTTCGGCTGAGCACATGTGC+AGG | 0.513849 | 1_3:-8480427 | None:intergenic |
| CTTGGTGGTTATCTGTGTCA+TGG | 0.520942 | 1_3:-8477494 | None:intergenic |
| CTGAGCACATGTGCAGGAGG+GGG | 0.524150 | 1_3:-8480421 | None:intergenic |
| GGCTGAGCACATGTGCAGGA+GGG | 0.526170 | 1_3:-8480423 | None:intergenic |
| GAACTGACGGTGGTGCTTGG+TGG | 0.527613 | 1_3:-8477509 | None:intergenic |
| GTACTTTCTTCGCTGCAGCC+AGG | 0.533570 | 1_3:+8480383 | Msa0101820:CDS |
| ATGATCAGTAGAAGGAGCAT+AGG | 0.537008 | 1_3:-8479285 | None:intergenic |
| TTTGAAGCACCTTCATGCTA+AGG | 0.538653 | 1_3:+8479403 | Msa0101820:CDS |
| AGTTACCTTGTACCTCAAAT+GGG | 0.544838 | 1_3:+8478143 | Msa0101820:CDS |
| AGTGAAAATGTCGGTCTACT+CGG | 0.546301 | 1_3:+8480896 | Msa0101820:intron |
| CATGGTCCAGTTAGAACCAA+TGG | 0.547851 | 1_3:+8481384 | Msa0101820:CDS |
| AGTCCAAAATTCTGAGGTGG+TGG | 0.551027 | 1_3:-8477549 | None:intergenic |
| GTGCCTGTGGTATGTGTGGT+CGG | 0.558828 | 1_3:+8479105 | Msa0101820:CDS |
| AGGCTTCCGGTGATTATGGG+TGG | 0.559262 | 1_3:+8478444 | Msa0101820:CDS |
| GTTCAATAGGGGCTTTCCGA+TGG | 0.560473 | 1_3:+8479137 | Msa0101820:CDS |
| ATATCTTCCTTGGATATAGT+AGG | 0.561320 | 1_3:+8478905 | Msa0101820:CDS |
| TACTCGGTCTCACACACATA+GGG | 0.564279 | 1_3:+8480912 | Msa0101820:CDS |
| AACGCCATGAAGGATTTGAA+TGG | 0.564370 | 1_3:-8477629 | None:intergenic |
| AGCGGCGAAAGCCCAAATAA+CGG | 0.565764 | 1_3:-8479468 | None:intergenic |
| TCCTTGGATATAGTAGGACG+TGG | 0.566244 | 1_3:+8478911 | Msa0101820:CDS |
| GTTGTGTTATGATCAGTAGA+AGG | 0.566400 | 1_3:-8479293 | None:intergenic |
| TATGATGAGCCTTAGCATGA+AGG | 0.568732 | 1_3:-8479412 | None:intergenic |
| TCAGTTCAGGCACCGCCACC+GGG | 0.569461 | 1_3:+8477525 | Msa0101820:CDS |
| GGTGGCGGTGCCTGAACTGA+CGG | 0.570549 | 1_3:-8477522 | None:intergenic |
| CTACTCGGTCTCACACACAT+AGG | 0.573563 | 1_3:+8480911 | Msa0101820:CDS |
| AAAAGATACTAACGCCATGA+AGG | 0.576140 | 1_3:-8477639 | None:intergenic |
| GGTTCCTTTCCAGAAAAGGA+AGG | 0.579848 | 1_3:+8481753 | Msa0101820:CDS |
| TGTATGCACCAGCAACGGTA+AGG | 0.580085 | 1_3:-8479493 | None:intergenic |
| TTCTGGAAAGGAACCCACCA+TGG | 0.587333 | 1_3:-8481745 | None:intergenic |
| TTCTGAGGTGGTGGTCCCGG+TGG | 0.588875 | 1_3:-8477540 | None:intergenic |
| CTCCCATCATCCCAAAGACA+TGG | 0.591623 | 1_3:-8479979 | None:intergenic |
| GATAATTGTAGTGAAAATGT+CGG | 0.591973 | 1_3:+8480887 | Msa0101820:intron |
| TACCTTGTACCTCAAATGGG+TGG | 0.594735 | 1_3:+8478146 | Msa0101820:CDS |
| AGGCTCATCATATACTTGAG+AGG | 0.595130 | 1_3:+8479423 | Msa0101820:CDS |
| ACCTTGTACCTCAAATGGGT+GGG | 0.603296 | 1_3:+8478147 | Msa0101820:CDS |
| TCCCACCCATTTGAGGTACA+AGG | 0.605710 | 1_3:-8478148 | None:intergenic |
| TGGACAGAGGACTTCCATGG+TGG | 0.609884 | 1_3:+8481731 | Msa0101820:CDS |
| GGACAGAGGACTTCCATGGT+GGG | 0.611007 | 1_3:+8481732 | Msa0101820:CDS |
| AGTGATCCACCCATAATCAC+CGG | 0.611658 | 1_3:-8478450 | None:intergenic |
| CCCACGTCCTACTATATCCA+AGG | 0.611681 | 1_3:-8478912 | None:intergenic |
| AGCACTTGTTAGTTCTGCTG+AGG | 0.613195 | 1_3:+8480003 | Msa0101820:CDS |
| AGTATTGTATGCACCAGCAA+CGG | 0.621068 | 1_3:-8479498 | None:intergenic |
| CTTGAAAGTCCAAAATTCTG+AGG | 0.626530 | 1_3:-8477555 | None:intergenic |
| TGTTCAGCTGGAGTCCAAGT+GGG | 0.628708 | 1_3:-8477582 | None:intergenic |
| CTGTTCAGCTGGAGTCCAAG+TGG | 0.629085 | 1_3:-8477583 | None:intergenic |
| GTTCCTTTCCAGAAAAGGAA+GGG | 0.629131 | 1_3:+8481754 | Msa0101820:CDS |
| ATAGCAGCGAATATTGGGAG+AGG | 0.630706 | 1_3:-8481112 | None:intergenic |
| TAACGTTAAATAGAACAGCA+TGG | 0.634085 | 1_3:-8477117 | None:intergenic |
| CTGTGGACAGAGGACTTCCA+TGG | 0.638844 | 1_3:+8481728 | Msa0101820:CDS |
| ACCAGCAACGGTAAGGATAG+CGG | 0.639172 | 1_3:-8479486 | None:intergenic |
| GTCATGAACACTGCACCTGA+TGG | 0.642428 | 1_3:+8481360 | Msa0101820:CDS |
| GTGTTCATGACAAAATATTG+TGG | 0.643236 | 1_3:-8481348 | None:intergenic |
| CCTTGGATATAGTAGGACGT+GGG | 0.643453 | 1_3:+8478912 | Msa0101820:CDS |
| AATTGAGATCCCGAGAAACA+AGG | 0.647055 | 1_3:-8481325 | None:intergenic |
| AGTCCGACCACACATACCAC+AGG | 0.647801 | 1_3:-8479108 | None:intergenic |
| TGAAGCCAAACAAACAGCTG+TGG | 0.648330 | 1_3:+8481711 | Msa0101820:CDS |
| GAAAGTCCAAAATTCTGAGG+TGG | 0.648379 | 1_3:-8477552 | None:intergenic |
| ATGCTGATTGAAGGCATCTG+TGG | 0.649784 | 1_3:+8480565 | Msa0101820:CDS |
| ACACATAGGGAGCAGAAGAG+TGG | 0.656435 | 1_3:+8480925 | Msa0101820:CDS |
| CATTGTGCCTGTGGTATGTG+TGG | 0.665274 | 1_3:+8479101 | Msa0101820:CDS |
| AAACAAACAGCTGTGGACAG+AGG | 0.674809 | 1_3:+8481718 | Msa0101820:CDS |
| GGACTCGGACTGTTCAATAG+GGG | 0.675399 | 1_3:+8479126 | Msa0101820:CDS |
| CTTGGATATAGTAGGACGTG+GGG | 0.677199 | 1_3:+8478913 | Msa0101820:CDS |
| AACACTGCACCTGATGGTCA+TGG | 0.680577 | 1_3:+8481366 | Msa0101820:CDS |
| GGCGGTGCCTGAACTGACGG+TGG | 0.713228 | 1_3:-8477519 | None:intergenic |
| AGAGTGGTGCAAATGTCATG+TGG | 0.748681 | 1_3:+8480941 | Msa0101820:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTATTTTTATTTTTTT+TGG | + | chr1_3:8477996-8478015 | Msa0101820:intron | 0.0% |
| !!! | TTTTTATTTTTATTTTTTTT+GGG | + | chr1_3:8477997-8478016 | Msa0101820:intron | 0.0% |
| !! | TTAAAATAAAGAAAAAGTAA+CGG | - | chr1_3:8477309-8477328 | None:intergenic | 10.0% |
| !!! | TAATTTTTTTTTACAAGTTA+AGG | - | chr1_3:8477735-8477754 | None:intergenic | 10.0% |
| !!! | TATTGTTTTTTTTTTTGTAA+CGG | + | chr1_3:8478260-8478279 | Msa0101820:intron | 10.0% |
| !!! | TTTTTTTAAAAAAGTTGCTT+TGG | + | chr1_3:8477895-8477914 | Msa0101820:intron | 15.0% |
| !!! | AATTGAAATTTTCAGAATTT+GGG | - | chr1_3:8478688-8478707 | None:intergenic | 15.0% |
| !!! | AAATTGAAATTTTCAGAATT+TGG | - | chr1_3:8478689-8478708 | None:intergenic | 15.0% |
| !!! | GTTTATTAGTTAATATCTTT+TGG | + | chr1_3:8479004-8479023 | Msa0101820:intron | 15.0% |
| !! | TATAGTAAGTAATTTATTCT+TGG | - | chr1_3:8479186-8479205 | None:intergenic | 15.0% |
| !!! | TTTAAGTATAAGCTATTTTT+AGG | - | chr1_3:8479805-8479824 | None:intergenic | 15.0% |
| !!! | AATTAAACTTTTTTTCAAAC+AGG | + | chr1_3:8479833-8479852 | Msa0101820:intron | 15.0% |
| !! | AATGAAAAATACTAAGAATA+AGG | - | chr1_3:8480042-8480061 | None:intergenic | 15.0% |
| !! | AATTAAGTTAATTGTTCAAA+TGG | - | chr1_3:8480486-8480505 | None:intergenic | 15.0% |
| !!! | TTAAATATTGATTATAGACA+TGG | + | chr1_3:8480808-8480827 | Msa0101820:intron | 15.0% |
| !! | AATTCTTAACAAATAATCAA+TGG | - | chr1_3:8480836-8480855 | None:intergenic | 15.0% |
| !! | AAAAAAAAGACCAGTTATTA+AGG | - | chr1_3:8477235-8477254 | None:intergenic | 20.0% |
| !! | TTCAATGAAAAAAAAACGTT+TGG | - | chr1_3:8477424-8477443 | None:intergenic | 20.0% |
| !! | TTTGTGTGAGAAAAAAAAAT+GGG | + | chr1_3:8477471-8477490 | Msa0101820:exon | 20.0% |
| !!! | ATGTTAGTATTGTTAGTTTT+TGG | + | chr1_3:8478286-8478305 | Msa0101820:intron | 20.0% |
| !! | ATGAAAACATATTGTGATTT+CGG | + | chr1_3:8478559-8478578 | Msa0101820:intron | 20.0% |
| !! | TAACTTATAAACTTATGTTC+AGG | - | chr1_3:8478614-8478633 | None:intergenic | 20.0% |
| !! | GAACATAAGTTTATAAGTTA+AGG | + | chr1_3:8478614-8478633 | Msa0101820:intron | 20.0% |
| !!! | TTTTTCTCTTTATCATCTTT+TGG | + | chr1_3:8479033-8479052 | Msa0101820:intron | 20.0% |
| !!! | CTTTTTTATCTTTCTTTATC+AGG | + | chr1_3:8479061-8479080 | Msa0101820:intron | 20.0% |
| !! | TAGCAAAAGTAGTATATTTA+GGG | + | chr1_3:8479591-8479610 | Msa0101820:intron | 20.0% |
| !!! | AACAATTATGTTTTTATTCC+AGG | + | chr1_3:8479906-8479925 | Msa0101820:intron | 20.0% |
| !!! | ATGATTTTATGCTCTATTTT+TGG | + | chr1_3:8480968-8480987 | Msa0101820:intron | 20.0% |
| !! | ATAATTTAATGTGCATGTAA+TGG | - | chr1_3:8481177-8481196 | None:intergenic | 20.0% |
| !!! | ATAAGGAATATCTATGTTTT+CGG | + | chr1_3:8481297-8481316 | Msa0101820:CDS | 20.0% |
| !! | CATATATGAAAATGACAAAA+GGG | - | chr1_3:8481490-8481509 | None:intergenic | 20.0% |
| !! | ACATATATGAAAATGACAAA+AGG | - | chr1_3:8481491-8481510 | None:intergenic | 20.0% |
| !! | ATTAAGGTTACTACGTTTTA+TGG | - | chr1_3:8477219-8477238 | None:intergenic | 25.0% |
| !!! | TTTTTCATGAGTACTTTTTC+TGG | + | chr1_3:8477250-8477269 | Msa0101820:five_prime_UTR | 25.0% |
| ! | AAAGAAAAAGTAACGGTTAT+GGG | - | chr1_3:8477302-8477321 | None:intergenic | 25.0% |
| ! | TAAAGAAAAAGTAACGGTTA+TGG | - | chr1_3:8477303-8477322 | None:intergenic | 25.0% |
| ! | GTTTGTGTGAGAAAAAAAAA+TGG | + | chr1_3:8477470-8477489 | Msa0101820:exon | 25.0% |
| !!! | GTATTGTTAGTTTTTGGTAA+TGG | + | chr1_3:8478292-8478311 | Msa0101820:intron | 25.0% |
| !!! | AAATTTTCAGAATTTGGGTT+GGG | - | chr1_3:8478683-8478702 | None:intergenic | 25.0% |
| ! | TACACAATTAGAACAATTCA+AGG | + | chr1_3:8478856-8478875 | Msa0101820:CDS | 25.0% |
| !! | ACTTATTTGAGTCTTTTCTT+TGG | - | chr1_3:8479525-8479544 | None:intergenic | 25.0% |
| ! | GTAGCAAAAGTAGTATATTT+AGG | + | chr1_3:8479590-8479609 | Msa0101820:intron | 25.0% |
| !! | TAGTATATTTAGGGTCTATT+TGG | + | chr1_3:8479600-8479619 | Msa0101820:intron | 25.0% |
| ! | AATACACTGAAAACAACTTA+TGG | - | chr1_3:8479708-8479727 | None:intergenic | 25.0% |
| ! | CATGTAGAAACTGATAATAT+AGG | + | chr1_3:8480090-8480109 | Msa0101820:intron | 25.0% |
| ! | AACTGATGATCTAATTAATC+TGG | + | chr1_3:8480322-8480341 | Msa0101820:intron | 25.0% |
| !! | CTTGTAACTTTTGTGATATA+GGG | + | chr1_3:8480535-8480554 | Msa0101820:intron | 25.0% |
| ! | AAACAGAAACAAAACAAAAG+TGG | - | chr1_3:8480637-8480656 | None:intergenic | 25.0% |
| ! | AAAAAATGTGAATTTGCCAA+TGG | - | chr1_3:8480740-8480759 | None:intergenic | 25.0% |
| ! | TATTTAACCAAATAAAACCC+AGG | - | chr1_3:8480795-8480814 | None:intergenic | 25.0% |
| ! | GATAATTGTAGTGAAAATGT+CGG | + | chr1_3:8480887-8480906 | Msa0101820:intron | 25.0% |
| ! | ATTACACTTCAATTCTTGTT+TGG | + | chr1_3:8480999-8481018 | Msa0101820:intron | 25.0% |
| ! | TAAGTAACATTTAAGTGCAA+TGG | - | chr1_3:8481031-8481050 | None:intergenic | 25.0% |
| !! | ATGTCTATTTCAGGTAAATT+CGG | + | chr1_3:8481070-8481089 | Msa0101820:intron | 25.0% |
| !!! | GCTATATACTGTGTTTTATT+CGG | + | chr1_3:8481130-8481149 | Msa0101820:CDS | 25.0% |
| ! | GATAGAGAGATAATTGTATA+AGG | - | chr1_3:8481225-8481244 | None:intergenic | 25.0% |
| ! | TTGCAAATAACAATTCCATA+AGG | + | chr1_3:8481280-8481299 | Msa0101820:CDS | 25.0% |
| ! | GAAAACATAGATATTCCTTA+TGG | - | chr1_3:8481298-8481317 | None:intergenic | 25.0% |
| ! | TATATGTTAAGAAAAGTAGC+CGG | + | chr1_3:8481504-8481523 | Msa0101820:intron | 25.0% |
| !! | ATGTTACTAAAATACCGTTT+TGG | + | chr1_3:8481556-8481575 | Msa0101820:intron | 25.0% |
| ! | ATATACGAAATCAACCAAAA+CGG | - | chr1_3:8481573-8481592 | None:intergenic | 25.0% |
| AACGTAGTAACCTTAATAAC+TGG | + | chr1_3:8477222-8477241 | Msa0101820:five_prime_UTR | 30.0% | |
| ! | TCAGAATTTTGGACTTTCAA+GGG | + | chr1_3:8477557-8477576 | Msa0101820:CDS | 30.0% |
| !!! | TGTTAGTTTTTGGTAATGGT+AGG | + | chr1_3:8478296-8478315 | Msa0101820:intron | 30.0% |
| !!! | GTTAGTTTTTGGTAATGGTA+GGG | + | chr1_3:8478297-8478316 | Msa0101820:intron | 30.0% |
| !!! | TCCTGATTTTGTTGTTGTTA+TGG | + | chr1_3:8478335-8478354 | Msa0101820:intron | 30.0% |
| ACCATAACAACAACAAAATC+AGG | - | chr1_3:8478339-8478358 | None:intergenic | 30.0% | |
| !!! | ATCACTTGCTTTTTATCTAC+CGG | + | chr1_3:8478467-8478486 | Msa0101820:CDS | 30.0% |
| GTCTCGCATTATATGAAATA+AGG | + | chr1_3:8478588-8478607 | Msa0101820:intron | 30.0% | |
| TAAAACAACCTCTACAAAAC+CGG | - | chr1_3:8478658-8478677 | None:intergenic | 30.0% | |
| !!! | AATTTTCAGAATTTGGGTTG+GGG | - | chr1_3:8478682-8478701 | None:intergenic | 30.0% |
| ! | GAAATTTTCAGAATTTGGGT+TGG | - | chr1_3:8478684-8478703 | None:intergenic | 30.0% |
| GTCAACTAAATTTCTATGTG+TGG | + | chr1_3:8478728-8478747 | Msa0101820:intron | 30.0% | |
| TTGAATCACCAATTTCATGT+TGG | - | chr1_3:8478794-8478813 | None:intergenic | 30.0% | |
| ! | TCTTTTGTCAATATCTTCCT+TGG | + | chr1_3:8478895-8478914 | Msa0101820:CDS | 30.0% |
| ATATCTTCCTTGGATATAGT+AGG | + | chr1_3:8478905-8478924 | Msa0101820:CDS | 30.0% | |
| AAACTCATAAGCGAATGTTT+CGG | - | chr1_3:8479335-8479354 | None:intergenic | 30.0% | |
| GAAATGTAAAAGGTTGTTGT+TGG | - | chr1_3:8479370-8479389 | None:intergenic | 30.0% | |
| ! | ACAACAACCTTTTACATTTC+TGG | + | chr1_3:8479370-8479389 | Msa0101820:intron | 30.0% |
| GAACTTGAACAGTTAAATTG+AGG | - | chr1_3:8479860-8479879 | None:intergenic | 30.0% | |
| TTTAATGTAGCTTCATGTGT+CGG | + | chr1_3:8480125-8480144 | Msa0101820:intron | 30.0% | |
| ! | AATTTTACAGCTTCATTCTC+TGG | + | chr1_3:8480241-8480260 | Msa0101820:intron | 30.0% |
| ! | GATCATCAGTTTGATAACAA+CGG | - | chr1_3:8480313-8480332 | None:intergenic | 30.0% |
| ! | AAATTTTGTATGCAGTCAAC+TGG | + | chr1_3:8480361-8480380 | Msa0101820:intron | 30.0% |
| CCTATATCACAAAAGTTACA+AGG | - | chr1_3:8480537-8480556 | None:intergenic | 30.0% | |
| ! | CCTTGTAACTTTTGTGATAT+AGG | + | chr1_3:8480534-8480553 | Msa0101820:intron | 30.0% |
| ! | GATTTTTCCATGTCTATTTC+AGG | + | chr1_3:8481061-8481080 | Msa0101820:intron | 30.0% |
| GAATTTACCTGAAATAGACA+TGG | - | chr1_3:8481071-8481090 | None:intergenic | 30.0% | |
| AGTATATAGCAGCGAATATT+GGG | - | chr1_3:8481120-8481139 | None:intergenic | 30.0% | |
| ATTTAATGTGCATGTAATGG+TGG | - | chr1_3:8481174-8481193 | None:intergenic | 30.0% | |
| GTGTTCATGACAAAATATTG+TGG | - | chr1_3:8481351-8481370 | None:intergenic | 30.0% | |
| ACAAAAGGGACTTGTAAAAA+GGG | - | chr1_3:8481476-8481495 | None:intergenic | 30.0% | |
| AATAGACACGATAAATACAC+CGG | - | chr1_3:8481526-8481545 | None:intergenic | 30.0% | |
| CTTGAAAGTCCAAAATTCTG+AGG | - | chr1_3:8477558-8477577 | None:intergenic | 35.0% | |
| ! | CTCAGAATTTTGGACTTTCA+AGG | + | chr1_3:8477556-8477575 | Msa0101820:CDS | 35.0% |
| ! | CAGAATTTTGGACTTTCAAG+GGG | + | chr1_3:8477558-8477577 | Msa0101820:CDS | 35.0% |
| AAAAGATACTAACGCCATGA+AGG | - | chr1_3:8477642-8477661 | None:intergenic | 35.0% | |
| AAGTTACCTTGTACCTCAAA+TGG | + | chr1_3:8478142-8478161 | Msa0101820:CDS | 35.0% | |
| AGTTACCTTGTACCTCAAAT+GGG | + | chr1_3:8478143-8478162 | Msa0101820:CDS | 35.0% | |
| !!! | TATGGTTTTGTAGCACGATA+AGG | + | chr1_3:8478353-8478372 | Msa0101820:intron | 35.0% |
| !! | CAGACATTGTTGTTTATGTC+TGG | + | chr1_3:8478387-8478406 | Msa0101820:intron | 35.0% |
| TCATTTATGATCGACATCAC+CGG | - | chr1_3:8478489-8478508 | None:intergenic | 35.0% | |
| ATGTGTGGTTTATGCTTGTT+TGG | + | chr1_3:8478743-8478762 | Msa0101820:intron | 35.0% | |
| TGCTTTGTCCAACATGAAAT+TGG | + | chr1_3:8478783-8478802 | Msa0101820:intron | 35.0% | |
| GTTGTGTTATGATCAGTAGA+AGG | - | chr1_3:8479296-8479315 | None:intergenic | 35.0% | |
| TCTACTGATCATAACACAAC+AGG | + | chr1_3:8479296-8479315 | Msa0101820:CDS | 35.0% | |
| TGCAAGACCAGAAATGTAAA+AGG | - | chr1_3:8479380-8479399 | None:intergenic | 35.0% | |
| TTATCTGCATTGCCGTTATT+TGG | + | chr1_3:8479456-8479475 | Msa0101820:CDS | 35.0% | |
| TATCTGCATTGCCGTTATTT+GGG | + | chr1_3:8479457-8479476 | Msa0101820:CDS | 35.0% | |
| !! | ACTACTTTTGCTACATACCA+TGG | - | chr1_3:8479584-8479603 | None:intergenic | 35.0% |
| GAAAACAACTTATGGACATG+TGG | - | chr1_3:8479700-8479719 | None:intergenic | 35.0% | |
| TGTATTTCCATAAGCTCTCT+AGG | + | chr1_3:8479722-8479741 | Msa0101820:intron | 35.0% | |
| !! | ACATGGCTAGCTTTGAATAT+GGG | - | chr1_3:8479965-8479984 | None:intergenic | 35.0% |
| TGTTTGACACTAAGACATGT+TGG | + | chr1_3:8480148-8480167 | Msa0101820:intron | 35.0% | |
| TAACAACGGATCAACAGTAA+TGG | - | chr1_3:8480299-8480318 | None:intergenic | 35.0% | |
| ! | TTCTGTTTAGTGTTCTGAGT+AGG | + | chr1_3:8480649-8480668 | Msa0101820:intron | 35.0% |
| CAATGGTATAACTAGACACT+AGG | - | chr1_3:8480723-8480742 | None:intergenic | 35.0% | |
| CTAGTGTCTAGTTATACCAT+TGG | + | chr1_3:8480721-8480740 | Msa0101820:intron | 35.0% | |
| CAGTATATAGCAGCGAATAT+TGG | - | chr1_3:8481121-8481140 | None:intergenic | 35.0% | |
| !! | TGTGTTTTATTCGGCATTGT+CGG | + | chr1_3:8481139-8481158 | Msa0101820:CDS | 35.0% |
| GACAAAAGGGACTTGTAAAA+AGG | - | chr1_3:8481477-8481496 | None:intergenic | 35.0% | |
| CAACTGTGGCAATAATAGTT+GGG | + | chr1_3:8481668-8481687 | Msa0101820:intron | 35.0% | |
| ! | GAAAGTCCAAAATTCTGAGG+TGG | - | chr1_3:8477555-8477574 | None:intergenic | 40.0% |
| GCATCCATTCAAATCCTTCA+TGG | + | chr1_3:8477625-8477644 | Msa0101820:CDS | 40.0% | |
| AACGCCATGAAGGATTTGAA+TGG | - | chr1_3:8477632-8477651 | None:intergenic | 40.0% | |
| TCAACACATTGCTTCAGACT+TGG | + | chr1_3:8478412-8478431 | Msa0101820:intron | 40.0% | |
| ! | ACATTGCTTCAGACTTGGTT+TGG | + | chr1_3:8478417-8478436 | Msa0101820:intron | 40.0% |
| !! | TTCAGACTTGGTTTGGTTCA+AGG | + | chr1_3:8478424-8478443 | Msa0101820:intron | 40.0% |
| GATTCTCAGATGCGAAAGTT+TGG | - | chr1_3:8478521-8478540 | None:intergenic | 40.0% | |
| AACTTTCGCATCTGAGAATC+AGG | + | chr1_3:8478521-8478540 | Msa0101820:intron | 40.0% | |
| GTCGCACAAATACTTACCAT+CGG | - | chr1_3:8479156-8479175 | None:intergenic | 40.0% | |
| ! | ATGATCAGTAGAAGGAGCAT+AGG | - | chr1_3:8479288-8479307 | None:intergenic | 40.0% |
| ! | TTTGAAGCACCTTCATGCTA+AGG | + | chr1_3:8479403-8479422 | Msa0101820:CDS | 40.0% |
| TATGATGAGCCTTAGCATGA+AGG | - | chr1_3:8479415-8479434 | None:intergenic | 40.0% | |
| AGGCTCATCATATACTTGAG+AGG | + | chr1_3:8479423-8479442 | Msa0101820:CDS | 40.0% | |
| AGTATTGTATGCACCAGCAA+CGG | - | chr1_3:8479501-8479520 | None:intergenic | 40.0% | |
| TACTGACATAAGCACTTGTG+TGG | + | chr1_3:8479644-8479663 | Msa0101820:intron | 40.0% | |
| AAGCTATCCTAGAGAGCTTA+TGG | - | chr1_3:8479732-8479751 | None:intergenic | 40.0% | |
| TGGGTATGGAACATAAATCC+TGG | - | chr1_3:8479927-8479946 | None:intergenic | 40.0% | |
| ATGTTCCATACCCATTTCAG+TGG | + | chr1_3:8479933-8479952 | Msa0101820:intron | 40.0% | |
| TGTTCCATACCCATTTCAGT+GGG | + | chr1_3:8479934-8479953 | Msa0101820:intron | 40.0% | |
| !! | ATGGCTAGCTTTGAATATGG+GGG | - | chr1_3:8479963-8479982 | None:intergenic | 40.0% |
| !! | CATGGCTAGCTTTGAATATG+GGG | - | chr1_3:8479964-8479983 | None:intergenic | 40.0% |
| !! | GACATGGCTAGCTTTGAATA+TGG | - | chr1_3:8479966-8479985 | None:intergenic | 40.0% |
| TTCAAAGCTAGCCATGTCTT+TGG | + | chr1_3:8479968-8479987 | Msa0101820:intron | 40.0% | |
| TCAAAGCTAGCCATGTCTTT+GGG | + | chr1_3:8479969-8479988 | Msa0101820:intron | 40.0% | |
| TATGTAGCACTTCAGATCGA+AGG | - | chr1_3:8480186-8480205 | None:intergenic | 40.0% | |
| AGTAGGAGTGAACATGGAAA+GGG | + | chr1_3:8480666-8480685 | Msa0101820:intron | 40.0% | |
| GTGAACATGGAAAGGGTTAT+AGG | + | chr1_3:8480673-8480692 | Msa0101820:intron | 40.0% | |
| AACATGGAAAGGGTTATAGG+TGG | + | chr1_3:8480676-8480695 | Msa0101820:intron | 40.0% | |
| ATGGAAATAGCAGTGGAGTA+TGG | - | chr1_3:8480766-8480785 | None:intergenic | 40.0% | |
| AATAAAACCCAGGTTGTGCA+TGG | - | chr1_3:8480785-8480804 | None:intergenic | 40.0% | |
| !!! | TGCACAACCTGGGTTTTATT+TGG | + | chr1_3:8480785-8480804 | Msa0101820:intron | 40.0% |
| AGTGAAAATGTCGGTCTACT+CGG | + | chr1_3:8480896-8480915 | Msa0101820:intron | 40.0% | |
| GAGAGGAATTGATGCGAAAA+AGG | - | chr1_3:8481098-8481117 | None:intergenic | 40.0% | |
| ! | TTTTATTCGGCATTGTCGGT+AGG | + | chr1_3:8481143-8481162 | Msa0101820:intron | 40.0% |
| ! | TTCGGCTTAACCTTGTTTCT+CGG | + | chr1_3:8481315-8481334 | Msa0101820:CDS | 40.0% |
| AATTGAGATCCCGAGAAACA+AGG | - | chr1_3:8481328-8481347 | None:intergenic | 40.0% | |
| !! | AGTTAGAACCAATGGTGGAT+GGG | + | chr1_3:8481392-8481411 | Msa0101820:intron | 40.0% |
| !!! | GTACCTTGTCTTGTTTTGTG+TGG | + | chr1_3:8481602-8481621 | Msa0101820:intron | 40.0% |
| TTGCCACACAAAACAAGACA+AGG | - | chr1_3:8481608-8481627 | None:intergenic | 40.0% | |
| !! | AGTTGGTGGAGATGAGAATA+TGG | - | chr1_3:8481653-8481672 | None:intergenic | 40.0% |
| ACTATTATTGCCACAGTTGG+TGG | - | chr1_3:8481667-8481686 | None:intergenic | 40.0% | |
| CCAACTATTATTGCCACAGT+TGG | - | chr1_3:8481670-8481689 | None:intergenic | 40.0% | |
| CCAACTGTGGCAATAATAGT+TGG | + | chr1_3:8481667-8481686 | Msa0101820:intron | 40.0% | |
| GTTCCTTTCCAGAAAAGGAA+GGG | + | chr1_3:8481754-8481773 | Msa0101820:CDS | 40.0% | |
| ! | CTTGGTGGTTATCTGTGTCA+TGG | - | chr1_3:8477497-8477516 | None:intergenic | 45.0% |
| !! | AGTCCAAAATTCTGAGGTGG+TGG | - | chr1_3:8477552-8477571 | None:intergenic | 45.0% |
| !!! | TGCAGCTGAAGCATTGCTTT+TGG | + | chr1_3:8478073-8478092 | Msa0101820:intron | 45.0% |
| CAGCACTACATTGTGATGCT+TGG | + | chr1_3:8478101-8478120 | Msa0101820:CDS | 45.0% | |
| TACCTTGTACCTCAAATGGG+TGG | + | chr1_3:8478146-8478165 | Msa0101820:CDS | 45.0% | |
| ACCTTGTACCTCAAATGGGT+GGG | + | chr1_3:8478147-8478166 | Msa0101820:CDS | 45.0% | |
| !! | TTGGTTTGGTTCAAGGCTTC+CGG | + | chr1_3:8478431-8478450 | Msa0101820:CDS | 45.0% |
| TTCAAGGCTTCCGGTGATTA+TGG | + | chr1_3:8478440-8478459 | Msa0101820:CDS | 45.0% | |
| TCAAGGCTTCCGGTGATTAT+GGG | + | chr1_3:8478441-8478460 | Msa0101820:CDS | 45.0% | |
| AGTGATCCACCCATAATCAC+CGG | - | chr1_3:8478453-8478472 | None:intergenic | 45.0% | |
| GCAATTCTCACCTTACAAGC+CGG | + | chr1_3:8478636-8478655 | Msa0101820:intron | 45.0% | |
| !! | CTCTACAAAACCGGCTTGTA+AGG | - | chr1_3:8478649-8478668 | None:intergenic | 45.0% |
| !! | CTTACAAGCCGGTTTTGTAG+AGG | + | chr1_3:8478647-8478666 | Msa0101820:intron | 45.0% |
| TATCACACTTGCACCTGTAG+AGG | + | chr1_3:8478827-8478846 | Msa0101820:intron | 45.0% | |
| TTGTGTAGCGAAACCTCTAC+AGG | - | chr1_3:8478843-8478862 | None:intergenic | 45.0% | |
| TCCTTGGATATAGTAGGACG+TGG | + | chr1_3:8478911-8478930 | Msa0101820:CDS | 45.0% | |
| CCTTGGATATAGTAGGACGT+GGG | + | chr1_3:8478912-8478931 | Msa0101820:CDS | 45.0% | |
| CTTGGATATAGTAGGACGTG+GGG | + | chr1_3:8478913-8478932 | Msa0101820:CDS | 45.0% | |
| ACCACAGGCACAATGCTAAT+GGG | - | chr1_3:8479096-8479115 | None:intergenic | 45.0% | |
| TACCACAGGCACAATGCTAA+TGG | - | chr1_3:8479097-8479116 | None:intergenic | 45.0% | |
| CTTGCAGATTGTGTGCAGAT+TGG | + | chr1_3:8479258-8479277 | Msa0101820:CDS | 45.0% | |
| TTGCTACATACCATGGAGCA+CGG | - | chr1_3:8479577-8479596 | None:intergenic | 45.0% | |
| GTTCCATACCCATTTCAGTG+GGG | + | chr1_3:8479935-8479954 | Msa0101820:intron | 45.0% | |
| !! | TAGCCATGTCTTTGGGATGA+TGG | + | chr1_3:8479976-8479995 | Msa0101820:CDS | 45.0% |
| !! | AGCCATGTCTTTGGGATGAT+GGG | + | chr1_3:8479977-8479996 | Msa0101820:CDS | 45.0% |
| !! | AGCACTTGTTAGTTCTGCTG+AGG | + | chr1_3:8480003-8480022 | Msa0101820:CDS | 45.0% |
| ! | GGCATTAGCATGCTGATTGA+AGG | + | chr1_3:8480556-8480575 | Msa0101820:CDS | 45.0% |
| !! | ATGCTGATTGAAGGCATCTG+TGG | + | chr1_3:8480565-8480584 | Msa0101820:CDS | 45.0% |
| ! | GTTCTGAGTAGGAGTGAACA+TGG | + | chr1_3:8480660-8480679 | Msa0101820:intron | 45.0% |
| GAGTAGGAGTGAACATGGAA+AGG | + | chr1_3:8480665-8480684 | Msa0101820:intron | 45.0% | |
| TGGAAAGGGTTATAGGTGGA+AGG | + | chr1_3:8480680-8480699 | Msa0101820:intron | 45.0% | |
| GTTGTGCATGGAAATAGCAG+TGG | - | chr1_3:8480773-8480792 | None:intergenic | 45.0% | |
| !! | TGCTATTTCCATGCACAACC+TGG | + | chr1_3:8480774-8480793 | Msa0101820:intron | 45.0% |
| ! | GCTATTTCCATGCACAACCT+GGG | + | chr1_3:8480775-8480794 | Msa0101820:intron | 45.0% |
| TACTCGGTCTCACACACATA+GGG | + | chr1_3:8480912-8480931 | Msa0101820:CDS | 45.0% | |
| AGAGTGGTGCAAATGTCATG+TGG | + | chr1_3:8480941-8480960 | Msa0101820:CDS | 45.0% | |
| ATAGCAGCGAATATTGGGAG+AGG | - | chr1_3:8481115-8481134 | None:intergenic | 45.0% | |
| ! | TCGGCTTAACCTTGTTTCTC+GGG | + | chr1_3:8481316-8481335 | Msa0101820:CDS | 45.0% |
| CATGGTCCAGTTAGAACCAA+TGG | + | chr1_3:8481384-8481403 | Msa0101820:CDS | 45.0% | |
| !! | CATCCACCATTGGTTCTAAC+TGG | - | chr1_3:8481393-8481412 | None:intergenic | 45.0% |
| ! | CAGTTAGAACCAATGGTGGA+TGG | + | chr1_3:8481391-8481410 | Msa0101820:intron | 45.0% |
| GGACTTGTAAAAAGGGACTG+AGG | - | chr1_3:8481469-8481488 | None:intergenic | 45.0% | |
| ATTCTCATCTCCACCAACTG+TGG | + | chr1_3:8481654-8481673 | Msa0101820:intron | 45.0% | |
| TGAAGCCAAACAAACAGCTG+TGG | + | chr1_3:8481711-8481730 | Msa0101820:CDS | 45.0% | |
| TCTGTCCACAGCTGTTTGTT+TGG | - | chr1_3:8481719-8481738 | None:intergenic | 45.0% | |
| AAACAAACAGCTGTGGACAG+AGG | + | chr1_3:8481718-8481737 | Msa0101820:CDS | 45.0% | |
| GGTTCCTTTCCAGAAAAGGA+AGG | + | chr1_3:8481753-8481772 | Msa0101820:CDS | 45.0% | |
| !! | TCTCCCTTCCTTTTCTGGAA+AGG | - | chr1_3:8481760-8481779 | None:intergenic | 45.0% |
| !! | AAATTCTGAGGTGGTGGTCC+CGG | - | chr1_3:8477546-8477565 | None:intergenic | 50.0% |
| ! | GGACCACCACCTCAGAATTT+TGG | + | chr1_3:8477546-8477565 | Msa0101820:CDS | 50.0% |
| TGTTCAGCTGGAGTCCAAGT+GGG | - | chr1_3:8477585-8477604 | None:intergenic | 50.0% | |
| AGCTGAAGAAGCTGTTCAGC+TGG | - | chr1_3:8477597-8477616 | None:intergenic | 50.0% | |
| ! | TCCCACCCATTTGAGGTACA+AGG | - | chr1_3:8478151-8478170 | None:intergenic | 50.0% |
| ACATGACTCCCACCCATTTG+AGG | - | chr1_3:8478158-8478177 | None:intergenic | 50.0% | |
| CCCACGTCCTACTATATCCA+AGG | - | chr1_3:8478915-8478934 | None:intergenic | 50.0% | |
| TCCCATTAGCATTGTGCCTG+TGG | + | chr1_3:8479092-8479111 | Msa0101820:CDS | 50.0% | |
| CATTGTGCCTGTGGTATGTG+TGG | + | chr1_3:8479101-8479120 | Msa0101820:CDS | 50.0% | |
| TCGGACTCGGACTGTTCAAT+AGG | + | chr1_3:8479124-8479143 | Msa0101820:CDS | 50.0% | |
| CGGACTCGGACTGTTCAATA+GGG | + | chr1_3:8479125-8479144 | Msa0101820:CDS | 50.0% | |
| GGACTCGGACTGTTCAATAG+GGG | + | chr1_3:8479126-8479145 | Msa0101820:CDS | 50.0% | |
| GTTCAATAGGGGCTTTCCGA+TGG | + | chr1_3:8479137-8479156 | Msa0101820:CDS | 50.0% | |
| CACACAATCTGCAAGCTGCA+TGG | - | chr1_3:8479253-8479272 | None:intergenic | 50.0% | |
| AGCGGCGAAAGCCCAAATAA+CGG | - | chr1_3:8479471-8479490 | None:intergenic | 50.0% | |
| ACCAGCAACGGTAAGGATAG+CGG | - | chr1_3:8479489-8479508 | None:intergenic | 50.0% | |
| TGTATGCACCAGCAACGGTA+AGG | - | chr1_3:8479496-8479515 | None:intergenic | 50.0% | |
| TGCTACATACCATGGAGCAC+GGG | - | chr1_3:8479576-8479595 | None:intergenic | 50.0% | |
| GTACCCCACTGAAATGGGTA+TGG | - | chr1_3:8479941-8479960 | None:intergenic | 50.0% | |
| CTCCCATCATCCCAAAGACA+TGG | - | chr1_3:8479982-8480001 | None:intergenic | 50.0% | |
| ! | GGCATCTGTGGTTCTGTTGT+TGG | + | chr1_3:8480577-8480596 | Msa0101820:CDS | 50.0% |
| CTACTCGGTCTCACACACAT+AGG | + | chr1_3:8480911-8480930 | Msa0101820:CDS | 50.0% | |
| ACACATAGGGAGCAGAAGAG+TGG | + | chr1_3:8480925-8480944 | Msa0101820:CDS | 50.0% | |
| TATCTCCTGCAGCTGCTACT+GGG | + | chr1_3:8481241-8481260 | Msa0101820:intron | 50.0% | |
| GTCATGAACACTGCACCTGA+TGG | + | chr1_3:8481360-8481379 | Msa0101820:CDS | 50.0% | |
| AACACTGCACCTGATGGTCA+TGG | + | chr1_3:8481366-8481385 | Msa0101820:CDS | 50.0% | |
| CTAACTGGACCATGACCATC+AGG | - | chr1_3:8481378-8481397 | None:intergenic | 50.0% | |
| GGTCCAGTTAGAACCAATGG+TGG | + | chr1_3:8481387-8481406 | Msa0101820:intron | 50.0% | |
| GTGACTTACCCATCCACCAT+TGG | - | chr1_3:8481403-8481422 | None:intergenic | 50.0% | |
| ! | TTCTGGAAAGGAACCCACCA+TGG | - | chr1_3:8481748-8481767 | None:intergenic | 50.0% |
| ! | GGTGGGTTCCTTTCCAGAAA+AGG | + | chr1_3:8481749-8481768 | Msa0101820:CDS | 50.0% |
| GACTTTCAAGGGGTCCCACT+TGG | + | chr1_3:8477568-8477587 | Msa0101820:CDS | 55.0% | |
| CTGTTCAGCTGGAGTCCAAG+TGG | - | chr1_3:8477586-8477605 | None:intergenic | 55.0% | |
| AGGCTTCCGGTGATTATGGG+TGG | + | chr1_3:8478444-8478463 | Msa0101820:CDS | 55.0% | |
| GTGCCTGTGGTATGTGTGGT+CGG | + | chr1_3:8479105-8479124 | Msa0101820:CDS | 55.0% | |
| AGTCCGACCACACATACCAC+AGG | - | chr1_3:8479111-8479130 | None:intergenic | 55.0% | |
| GTGGTATGTGTGGTCGGACT+CGG | + | chr1_3:8479111-8479130 | Msa0101820:CDS | 55.0% | |
| !! | TGGGGGTACCCCACTGAAAT+GGG | - | chr1_3:8479946-8479965 | None:intergenic | 55.0% |
| !! | ATGGGGGTACCCCACTGAAA+TGG | - | chr1_3:8479947-8479966 | None:intergenic | 55.0% |
| GTACTTTCTTCGCTGCAGCC+AGG | + | chr1_3:8480383-8480402 | Msa0101820:CDS | 55.0% | |
| CATGTGCTCAGCCGAAGCAT+CGG | + | chr1_3:8480433-8480452 | Msa0101820:CDS | 55.0% | |
| ! | ATGTGCTCAGCCGAAGCATC+GGG | + | chr1_3:8480434-8480453 | Msa0101820:CDS | 55.0% |
| TCACCTGAAGCCCGATGCTT+CGG | - | chr1_3:8480447-8480466 | None:intergenic | 55.0% | |
| CTATCTCCTGCAGCTGCTAC+TGG | + | chr1_3:8481240-8481259 | Msa0101820:intron | 55.0% | |
| CTGTGGACAGAGGACTTCCA+TGG | + | chr1_3:8481728-8481747 | Msa0101820:CDS | 55.0% | |
| TGGACAGAGGACTTCCATGG+TGG | + | chr1_3:8481731-8481750 | Msa0101820:CDS | 55.0% | |
| GGACAGAGGACTTCCATGGT+GGG | + | chr1_3:8481732-8481751 | Msa0101820:CDS | 55.0% | |
| GAACTGACGGTGGTGCTTGG+TGG | - | chr1_3:8477512-8477531 | None:intergenic | 60.0% | |
| CCTGAACTGACGGTGGTGCT+TGG | - | chr1_3:8477515-8477534 | None:intergenic | 60.0% | |
| CCAAGCACCACCGTCAGTTC+AGG | + | chr1_3:8477512-8477531 | Msa0101820:CDS | 60.0% | |
| GCCGCTATCCTTACCGTTGC+TGG | + | chr1_3:8479485-8479504 | Msa0101820:CDS | 60.0% | |
| ACCTTCTGACCCGTGCTCCA+TGG | + | chr1_3:8479564-8479583 | Msa0101820:intron | 60.0% | |
| ACCATGGAGCACGGGTCAGA+AGG | - | chr1_3:8479568-8479587 | None:intergenic | 60.0% | |
| TTCGCTGCAGCCAGGCTTTC+TGG | + | chr1_3:8480391-8480410 | Msa0101820:CDS | 60.0% | |
| ! | GGGTGTTGCACCAGAAAGCC+TGG | - | chr1_3:8480404-8480423 | None:intergenic | 60.0% |
| CTGAGCACATGTGCAGGAGG+GGG | - | chr1_3:8480424-8480443 | None:intergenic | 60.0% | |
| GCTGAGCACATGTGCAGGAG+GGG | - | chr1_3:8480425-8480444 | None:intergenic | 60.0% | |
| GGCTGAGCACATGTGCAGGA+GGG | - | chr1_3:8480426-8480445 | None:intergenic | 60.0% | |
| CTTCGGCTGAGCACATGTGC+AGG | - | chr1_3:8480430-8480449 | None:intergenic | 60.0% | |
| GAGATCCCAGTAGCAGCTGC+AGG | - | chr1_3:8481249-8481268 | None:intergenic | 60.0% | |
| ! | GGTGGCGGTGCCTGAACTGA+CGG | - | chr1_3:8477525-8477544 | None:intergenic | 65.0% |
| ! | GTCAGTTCAGGCACCGCCAC+CGG | + | chr1_3:8477524-8477543 | Msa0101820:CDS | 65.0% |
| ! | TCAGTTCAGGCACCGCCACC+GGG | + | chr1_3:8477525-8477544 | Msa0101820:CDS | 65.0% |
| !! | TTCTGAGGTGGTGGTCCCGG+TGG | - | chr1_3:8477543-8477562 | None:intergenic | 65.0% |
| CGGCTGAGCACATGTGCAGG+AGG | - | chr1_3:8480427-8480446 | None:intergenic | 65.0% | |
| !! | CAGCCGAAGCATCGGGCTTC+AGG | + | chr1_3:8480441-8480460 | Msa0101820:CDS | 65.0% |
| GGCGGTGCCTGAACTGACGG+TGG | - | chr1_3:8477522-8477541 | None:intergenic | 70.0% | |
| ! | TGAGGTGGTGGTCCCGGTGG+CGG | - | chr1_3:8477540-8477559 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 8477120 | 8481780 | 8477120 | ID=Msa0101820;Name=Msa0101820 |
| chr1_3 | mRNA | 8477120 | 8481780 | 8477120 | ID=Msa0101820-mRNA-1;Parent=Msa0101820;Name=Msa0101820-mRNA-1;_AED=0.21;_eAED=0.21;_QI=369|0.61|0.57|1|0.61|0.57|14|0|425 |
| chr1_3 | exon | 8477120 | 8477648 | 8477120 | ID=Msa0101820-mRNA-1:exon:3328;Parent=Msa0101820-mRNA-1 |
| chr1_3 | exon | 8478078 | 8478175 | 8478078 | ID=Msa0101820-mRNA-1:exon:3329;Parent=Msa0101820-mRNA-1 |
| chr1_3 | exon | 8478429 | 8478488 | 8478429 | ID=Msa0101820-mRNA-1:exon:3330;Parent=Msa0101820-mRNA-1 |
| chr1_3 | exon | 8478847 | 8478947 | 8478847 | ID=Msa0101820-mRNA-1:exon:3331;Parent=Msa0101820-mRNA-1 |
| chr1_3 | exon | 8479083 | 8479158 | 8479083 | ID=Msa0101820-mRNA-1:exon:3332;Parent=Msa0101820-mRNA-1 |
| chr1_3 | exon | 8479258 | 8479317 | 8479258 | ID=Msa0101820-mRNA-1:exon:3333;Parent=Msa0101820-mRNA-1 |
| chr1_3 | exon | 8479401 | 8479542 | 8479401 | ID=Msa0101820-mRNA-1:exon:3334;Parent=Msa0101820-mRNA-1 |
| chr1_3 | exon | 8479975 | 8480024 | 8479975 | ID=Msa0101820-mRNA-1:exon:3335;Parent=Msa0101820-mRNA-1 |
| chr1_3 | exon | 8480376 | 8480462 | 8480376 | ID=Msa0101820-mRNA-1:exon:3336;Parent=Msa0101820-mRNA-1 |
| chr1_3 | exon | 8480556 | 8480614 | 8480556 | ID=Msa0101820-mRNA-1:exon:3337;Parent=Msa0101820-mRNA-1 |
| chr1_3 | exon | 8480898 | 8480962 | 8480898 | ID=Msa0101820-mRNA-1:exon:3338;Parent=Msa0101820-mRNA-1 |
| chr1_3 | exon | 8481083 | 8481160 | 8481083 | ID=Msa0101820-mRNA-1:exon:3339;Parent=Msa0101820-mRNA-1 |
| chr1_3 | exon | 8481253 | 8481405 | 8481253 | ID=Msa0101820-mRNA-1:exon:3340;Parent=Msa0101820-mRNA-1 |
| chr1_3 | exon | 8481695 | 8481780 | 8481695 | ID=Msa0101820-mRNA-1:exon:3341;Parent=Msa0101820-mRNA-1 |
| chr1_3 | five_prime_UTR | 8477120 | 8477488 | 8477120 | ID=Msa0101820-mRNA-1:five_prime_utr;Parent=Msa0101820-mRNA-1 |
| chr1_3 | CDS | 8477489 | 8477648 | 8477489 | ID=Msa0101820-mRNA-1:cds;Parent=Msa0101820-mRNA-1 |
| chr1_3 | CDS | 8478078 | 8478175 | 8478078 | ID=Msa0101820-mRNA-1:cds;Parent=Msa0101820-mRNA-1 |
| chr1_3 | CDS | 8478429 | 8478488 | 8478429 | ID=Msa0101820-mRNA-1:cds;Parent=Msa0101820-mRNA-1 |
| chr1_3 | CDS | 8478847 | 8478947 | 8478847 | ID=Msa0101820-mRNA-1:cds;Parent=Msa0101820-mRNA-1 |
| chr1_3 | CDS | 8479083 | 8479158 | 8479083 | ID=Msa0101820-mRNA-1:cds;Parent=Msa0101820-mRNA-1 |
| chr1_3 | CDS | 8479258 | 8479317 | 8479258 | ID=Msa0101820-mRNA-1:cds;Parent=Msa0101820-mRNA-1 |
| chr1_3 | CDS | 8479401 | 8479542 | 8479401 | ID=Msa0101820-mRNA-1:cds;Parent=Msa0101820-mRNA-1 |
| chr1_3 | CDS | 8479975 | 8480024 | 8479975 | ID=Msa0101820-mRNA-1:cds;Parent=Msa0101820-mRNA-1 |
| chr1_3 | CDS | 8480376 | 8480462 | 8480376 | ID=Msa0101820-mRNA-1:cds;Parent=Msa0101820-mRNA-1 |
| chr1_3 | CDS | 8480556 | 8480614 | 8480556 | ID=Msa0101820-mRNA-1:cds;Parent=Msa0101820-mRNA-1 |
| chr1_3 | CDS | 8480898 | 8480962 | 8480898 | ID=Msa0101820-mRNA-1:cds;Parent=Msa0101820-mRNA-1 |
| chr1_3 | CDS | 8481083 | 8481160 | 8481083 | ID=Msa0101820-mRNA-1:cds;Parent=Msa0101820-mRNA-1 |
| chr1_3 | CDS | 8481253 | 8481405 | 8481253 | ID=Msa0101820-mRNA-1:cds;Parent=Msa0101820-mRNA-1 |
| chr1_3 | CDS | 8481695 | 8481780 | 8481695 | ID=Msa0101820-mRNA-1:cds;Parent=Msa0101820-mRNA-1 |
| Gene Sequence |
| Protein sequence |
