AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1113240

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1113240 MtrunA17_Chr7g0249041 97.701 87 2 0 1 87 1 87 2.57e-55 166
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1113240 AT4G30390.1 65.476 84 29 0 4 87 5 88 3.36e-36 118

Find 166 sgRNAs with CRISPR-Local

Find 243 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CACTAAATCCTTCGGGAATT+TGG 0.098316 7_3:-59441432 None:intergenic
AGAATAAAATAGTACTTATT+TGG 0.167085 7_3:+59442649 Msa1113240:three_prime_UTR
GGTTACGCTTGTAGATATTT+TGG 0.181272 7_3:+59441520 Msa1113240:three_prime_UTR
ACCCCACTTCGGAGGCTAAA+TGG 0.182922 7_3:-59441733 None:intergenic
GCCAACTAATTCTCGGTTAA+AGG 0.225160 7_3:-59441911 None:intergenic
CGGAGATGTCGGAGAGATTA+AGG 0.252011 7_3:-59439831 None:intergenic
GACTTCCATTCATTCATAAA+AGG 0.270719 7_3:-59441352 None:intergenic
CCCAGCATTGGTCCCAGCTT+TGG 0.273271 7_3:+59441933 Msa1113240:three_prime_UTR
TTCTTTCTTCAAGCTGTCTA+TGG 0.288528 7_3:-59442097 None:intergenic
CATCCTCCATTAGGATTTGT+AGG 0.298893 7_3:+59442366 Msa1113240:three_prime_UTR
CAATAACCAGGGTGCATGTT+TGG 0.304481 7_3:-59442522 None:intergenic
CACCCTGGTTATTGCCCTAA+TGG 0.309241 7_3:+59442531 Msa1113240:three_prime_UTR
CTGAGAAGGAGAGAGAAAAT+AGG 0.315789 7_3:+59439699 Msa1113240:five_prime_UTR
AAGTTGTTCCTTCACTGATT+TGG 0.332158 7_3:-59442220 None:intergenic
TACGAAATATATAAGCCATT+AGG 0.335934 7_3:-59442546 None:intergenic
ACACAAAATCAATTAGAATT+AGG 0.338329 7_3:-59439580 None:intergenic
AATTTGTTGTTTATATAAAC+AGG 0.340916 7_3:+59439736 Msa1113240:five_prime_UTR
ACGAAATATATAAGCCATTA+GGG 0.343120 7_3:-59442545 None:intergenic
AGGCGGCCAATCTAGACTTT+TGG 0.343637 7_3:+59441226 Msa1113240:three_prime_UTR
AACTCACTGGTAGGAAGAAC+AGG 0.344126 7_3:-59441043 None:intergenic
AACTCAACAGGCTTAAATTA+AGG 0.345205 7_3:+59441206 Msa1113240:three_prime_UTR
GAGTTGTTTCATCCTCCATT+AGG 0.351348 7_3:+59442357 Msa1113240:three_prime_UTR
TGTTGTCTTGCTTTACCATT+TGG 0.354692 7_3:+59442692 Msa1113240:three_prime_UTR
AACTAATAGTTGGCATGGTC+TGG 0.355399 7_3:+59442335 Msa1113240:three_prime_UTR
ACTATTAGTTCACGAGCTTC+AGG 0.358178 7_3:-59442322 None:intergenic
CAGGATCTTTGACTATTATC+AGG 0.362076 7_3:-59441393 None:intergenic
CTGAAACTGTTTATAGCAAC+TGG 0.365834 7_3:+59440965 Msa1113240:CDS
ACCAAAGCTGGGACCAATGC+TGG 0.375478 7_3:-59441934 None:intergenic
TCCACTTCTATTCGCTTCTC+TGG 0.381049 7_3:+59441499 Msa1113240:three_prime_UTR
CAGAAAAGTTTAGGTGGGTT+CGG 0.388169 7_3:-59439515 None:intergenic
GACTATTATCAGGTGGAAAC+GGG 0.402580 7_3:-59441383 None:intergenic
ATGGGAAGGGGTGAAATTGA+TGG 0.404928 7_3:+59442119 Msa1113240:three_prime_UTR
CCCCACTTCGGAGGCTAAAT+GGG 0.405485 7_3:-59441732 None:intergenic
GTCCCAGCTTTGGTGTTGGC+AGG 0.407640 7_3:+59441943 Msa1113240:three_prime_UTR
ATCTCGACCACGCAGTCCTC+TGG 0.407680 7_3:-59442195 None:intergenic
GACATCTGCACTAAATCCTT+CGG 0.408413 7_3:-59441440 None:intergenic
TCTCCTGCCAACACCAAAGC+TGG 0.408713 7_3:-59441946 None:intergenic
CACAAACCAAAAGTCTAGAT+TGG 0.413516 7_3:-59441232 None:intergenic
GTGTGGACTGTGGCTCAATC+TGG 0.418802 7_3:+59441771 Msa1113240:three_prime_UTR
CATTCTTCTAGATCTCTTCC+TGG 0.422448 7_3:+59439876 Msa1113240:CDS
CTCACTCCTACAAATCCTAA+TGG 0.422751 7_3:-59442372 None:intergenic
GTTTAGATTGGTGATGTGTT+TGG 0.428735 7_3:+59442400 Msa1113240:three_prime_UTR
AGATCTAGAAGAATGTGATC+AGG 0.429631 7_3:-59439868 None:intergenic
ACATCTGCACTAAATCCTTC+GGG 0.431937 7_3:-59441439 None:intergenic
ACGTTTGAATCCAACTCAAC+AGG 0.434494 7_3:+59441194 Msa1113240:three_prime_UTR
TGACTATTATCAGGTGGAAA+CGG 0.435701 7_3:-59441384 None:intergenic
TCAGATTATTAAAGAATTCG+TGG 0.449660 7_3:-59439680 None:intergenic
AAAGTGGGTTGCCGTATGTT+TGG 0.450892 7_3:+59442055 Msa1113240:three_prime_UTR
ACCCATTTAGCCTCCGAAGT+GGG 0.451793 7_3:+59441731 Msa1113240:three_prime_UTR
GCCTTTAACCGAGAATTAGT+TGG 0.454901 7_3:+59441910 Msa1113240:three_prime_UTR
GGGAAACTGTGGAAGATATA+TGG 0.454942 7_3:+59441983 Msa1113240:three_prime_UTR
TAGACAGCTTGAAGAAAGAA+TGG 0.467447 7_3:+59442100 Msa1113240:three_prime_UTR
CGCTGATGCCATGGCAGAGT+GGG 0.477662 7_3:+59442272 Msa1113240:three_prime_UTR
AATTTGGAGTTCTTCCTTGA+GGG 0.480278 7_3:-59441416 None:intergenic
TATCTTGAATTCCTCTGTGT+TGG 0.484553 7_3:-59441826 None:intergenic
GAACAAAATCTGCACCCTTA+CGG 0.484567 7_3:-59441702 None:intergenic
ATTAAGGACGGCTGAGTCAA+TGG 0.488201 7_3:-59439815 None:intergenic
TTAATTTAAGCCTGTTGAGT+TGG 0.488978 7_3:-59441204 None:intergenic
ATGCTGGGCCAACTAATTCT+CGG 0.493427 7_3:-59441918 None:intergenic
TTAAAGAAGAAAGGTGTGGC+AGG 0.494908 7_3:-59441661 None:intergenic
CTTTCATTTCTCCAAACATA+CGG 0.497867 7_3:-59442066 None:intergenic
GAGCCTGTGTTGGCGCATCT+AGG 0.503951 7_3:-59441798 None:intergenic
ATCAGGGATGAGAGAGAGAT+CGG 0.511014 7_3:-59439851 None:intergenic
AACTTTACAGACTGAAAGAA+AGG 0.511586 7_3:-59442153 None:intergenic
TATAGTGTATTAAAGAAGAA+AGG 0.512361 7_3:-59441670 None:intergenic
GCGTGACTGAGTTAGATTGA+AGG 0.512473 7_3:+59442624 Msa1113240:three_prime_UTR
GAGTGAGTGAATGTTTAGAT+TGG 0.514181 7_3:+59442388 Msa1113240:three_prime_UTR
GGAAAGAACACAGAGATTGA+TGG 0.516782 7_3:+59439645 Msa1113240:five_prime_UTR
TGGCAGAGTGGGTTAAGCTC+TGG 0.517333 7_3:+59442283 Msa1113240:three_prime_UTR
TGGAGTTCTTCCTTGAGGGC+AGG 0.518206 7_3:-59441412 None:intergenic
AAGCCATTAGGGCAATAACC+AGG 0.519233 7_3:-59442534 None:intergenic
TTCGAAAGCCGCTGATGCCA+TGG 0.519664 7_3:+59442263 Msa1113240:three_prime_UTR
AGAATTAGTTGGCCCAGCAT+TGG 0.520079 7_3:+59441921 Msa1113240:three_prime_UTR
ATTGGTCCCAGCTTTGGTGT+TGG 0.521152 7_3:+59441939 Msa1113240:three_prime_UTR
GCTTTGGTGTTGGCAGGAGA+AGG 0.521241 7_3:+59441949 Msa1113240:three_prime_UTR
AAATCAGTGAAGGAACAACT+TGG 0.521373 7_3:+59442222 Msa1113240:three_prime_UTR
CTAAGCCTCGGTGTGAAAAG+TGG 0.526128 7_3:+59442039 Msa1113240:three_prime_UTR
GAAGCTCGTGAACTAATAGT+TGG 0.527744 7_3:+59442325 Msa1113240:three_prime_UTR
GAGAGAGAGATCGGAGATGT+CGG 0.529629 7_3:-59439842 None:intergenic
AGACAGCTTGAAGAAAGAAT+GGG 0.532129 7_3:+59442101 Msa1113240:three_prime_UTR
CCAAAGCTGGGACCAATGCT+GGG 0.532879 7_3:-59441933 None:intergenic
GTGCAGAGAATATTGAAAGC+TGG 0.536542 7_3:+59440923 Msa1113240:intron
GTTTATAGCAACTGGTAATG+AGG 0.537844 7_3:+59440973 Msa1113240:CDS
CTCTGAAATTGAGCGAGTGG+TGG 0.538006 7_3:+59441471 Msa1113240:three_prime_UTR
AGTCAAAGATCCTGCCCTCA+AGG 0.538904 7_3:+59441402 Msa1113240:three_prime_UTR
AATTTGAAAAGAAGAAATAG+AGG 0.541103 7_3:+59439620 Msa1113240:five_prime_UTR
ACTATATGATCCATTCCGTA+AGG 0.553697 7_3:+59441687 Msa1113240:three_prime_UTR
CAGGAGAAGGAAAGCTCAGG+TGG 0.555962 7_3:+59441962 Msa1113240:three_prime_UTR
CTCCTGCCAACACCAAAGCT+GGG 0.557867 7_3:-59441945 None:intergenic
GATTCCACTCACTGGCAACA+TGG 0.560139 7_3:-59441881 None:intergenic
CCCATTTAGCCTCCGAAGTG+GGG 0.561643 7_3:+59441732 Msa1113240:three_prime_UTR
ACCAGAGAAGCGAATAGAAG+TGG 0.561782 7_3:-59441500 None:intergenic
GTTGGCTTGAGAGCCTGTGT+TGG 0.565124 7_3:-59441808 None:intergenic
AGAGGACTGCGTGGTCGAGA+TGG 0.569270 7_3:+59442197 Msa1113240:three_prime_UTR
AAATCTGCACCCTTACGGAA+TGG 0.569993 7_3:-59441697 None:intergenic
TCTGGCGTCGTAGCTGATTG+TGG 0.570688 7_3:-59442177 None:intergenic
GAATTTGGAGTTCTTCCTTG+AGG 0.571672 7_3:-59441417 None:intergenic
TCTGAAATTGAGCGAGTGGT+GGG 0.574447 7_3:+59441472 Msa1113240:three_prime_UTR
GTTGATTGTGCTCTGTCGTG+TGG 0.577748 7_3:+59441754 Msa1113240:three_prime_UTR
AGACCTAGATGCGCCAACAC+AGG 0.578067 7_3:+59441795 Msa1113240:three_prime_UTR
GTTAAGCTCTGGAAGTCAGT+TGG 0.579934 7_3:+59442294 Msa1113240:three_prime_UTR
GATCTAGAAGAATGTGATCA+GGG 0.580760 7_3:-59439867 None:intergenic
GTGTTTGGCAAAATCATTGT+GGG 0.580946 7_3:+59442415 Msa1113240:three_prime_UTR
TCGTGAACTAATAGTTGGCA+TGG 0.583069 7_3:+59442330 Msa1113240:three_prime_UTR
AACGAAGTTGACATTGTGAT+CGG 0.584032 7_3:+59441307 Msa1113240:three_prime_UTR
GCAATGTTGATTCCACTCAC+TGG 0.584544 7_3:-59441889 None:intergenic
TGGCAGGAGAAGGAAAGCTC+AGG 0.584833 7_3:+59441959 Msa1113240:three_prime_UTR
TGAAAAGAAGAAATAGAGGA+CGG 0.585737 7_3:+59439624 Msa1113240:five_prime_UTR
AGAGCCATGTTGCCAGTGAG+TGG 0.586101 7_3:+59441877 Msa1113240:three_prime_UTR
AAAGAAGAAAGGTGTGGCAG+GGG 0.586422 7_3:-59441659 None:intergenic
ATGGTGAGAGAAAGTAATGA+TGG 0.588762 7_3:-59439796 None:intergenic
ATTATTAAAGAATTCGTGGA+GGG 0.591719 7_3:-59439676 None:intergenic
AATTCTTTAATAATCTGAGA+AGG 0.593117 7_3:+59439685 Msa1113240:five_prime_UTR
GCTTGAAGAAAGAATGGGAA+GGG 0.593851 7_3:+59442106 Msa1113240:three_prime_UTR
GAGCTTAACCCACTCTGCCA+TGG 0.594397 7_3:-59442280 None:intergenic
TAAGCCTCGGTGTGAAAAGT+GGG 0.598697 7_3:+59442040 Msa1113240:three_prime_UTR
CTATATGATCCATTCCGTAA+GGG 0.604465 7_3:+59441688 Msa1113240:three_prime_UTR
CCACTCTGCCATGGCATCAG+CGG 0.607023 7_3:-59442271 None:intergenic
GTGCTCTGTCGTGTGGACTG+TGG 0.608262 7_3:+59441761 Msa1113240:three_prime_UTR
TATGTTTGGAGAAATGAAAG+AGG 0.608956 7_3:+59442069 Msa1113240:three_prime_UTR
TGTATTAAAGAAGAAAGGTG+TGG 0.611182 7_3:-59441665 None:intergenic
AAGGTGTGGCAGGGGTCTTG+AGG 0.612175 7_3:-59441651 None:intergenic
AAAGCTCAGGTGGGAAACTG+TGG 0.612768 7_3:+59441972 Msa1113240:three_prime_UTR
CGAGATGGCCAAATCAGTGA+AGG 0.615435 7_3:+59442212 Msa1113240:three_prime_UTR
GATCTTTGACTATTATCAGG+TGG 0.616826 7_3:-59441390 None:intergenic
GTATGCGACCACCTAAGCCT+CGG 0.617533 7_3:+59442027 Msa1113240:three_prime_UTR
TAAAGAAGAAAGGTGTGGCA+GGG 0.617653 7_3:-59441660 None:intergenic
CCGCTGATGCCATGGCAGAG+TGG 0.618375 7_3:+59442271 Msa1113240:three_prime_UTR
AGTGAAGGAACAACTTGGGA+AGG 0.619719 7_3:+59442227 Msa1113240:three_prime_UTR
TACCCATTTAGCCTCCGAAG+TGG 0.620536 7_3:+59441730 Msa1113240:three_prime_UTR
AGAGAAGCGAATAGAAGTGG+AGG 0.622245 7_3:-59441497 None:intergenic
CAACATGGCTCTCGTAGGAA+CGG 0.623643 7_3:-59441866 None:intergenic
AATCAGTGAAGGAACAACTT+GGG 0.624801 7_3:+59442223 Msa1113240:three_prime_UTR
ATTCATTCATAAAAGGAGTG+AGG 0.628201 7_3:-59441345 None:intergenic
GGAAGGGGTGAAATTGATGG+AGG 0.629194 7_3:+59442122 Msa1113240:three_prime_UTR
AAACTCTGAAATTGAGCGAG+TGG 0.630141 7_3:+59441468 Msa1113240:three_prime_UTR
GAACAGGGGTCACAATATGT+CGG 0.636120 7_3:-59441027 None:intergenic
GAGCACAATCAACCCCACTT+CGG 0.641756 7_3:-59441744 None:intergenic
CACAATCAACCCCACTTCGG+AGG 0.642239 7_3:-59441741 None:intergenic
CTTGAAGAAAGAATGGGAAG+GGG 0.643591 7_3:+59442107 Msa1113240:three_prime_UTR
ACTGGCAACATGGCTCTCGT+AGG 0.644873 7_3:-59441871 None:intergenic
AGCCATTAGGGCAATAACCA+GGG 0.645698 7_3:-59442533 None:intergenic
GTTCCAGCAAAAGATGACGC+GGG 0.649072 7_3:+59441592 Msa1113240:three_prime_UTR
ATTACTTGAGACATCTTGTG+AGG 0.652560 7_3:-59441274 None:intergenic
AGCTTGAAGAAAGAATGGGA+AGG 0.654031 7_3:+59442105 Msa1113240:three_prime_UTR
TCAGCGGCTTTCGAAAACAT+AGG 0.655253 7_3:-59442255 None:intergenic
GGGGAATGTAGTAGATGCTG+TGG 0.657954 7_3:+59441612 Msa1113240:three_prime_UTR
TTCCAGCAAAAGATGACGCG+GGG 0.659790 7_3:+59441593 Msa1113240:three_prime_UTR
TGTTCCAGCAAAAGATGACG+CGG 0.661904 7_3:+59441591 Msa1113240:three_prime_UTR
ACTCCTACAAATCCTAATGG+AGG 0.670063 7_3:-59442369 None:intergenic
TCAACAGGCTTAAATTAAGG+CGG 0.673941 7_3:+59441209 Msa1113240:three_prime_UTR
GATGTCGGAGAGATTAAGGA+CGG 0.674146 7_3:-59439827 None:intergenic
GTGAATCCAAACATGCACCC+TGG 0.676121 7_3:+59442516 Msa1113240:three_prime_UTR
GAAGAACTCCAAATTCCCGA+AGG 0.676927 7_3:+59441424 Msa1113240:three_prime_UTR
GAGTTTGAGAGAATCACAGT+GGG 0.679835 7_3:-59442490 None:intergenic
AGGAGAAGGAAAGCTCAGGT+GGG 0.684548 7_3:+59441963 Msa1113240:three_prime_UTR
ACAATCAGCTACGACGCCAG+AGG 0.686961 7_3:+59442179 Msa1113240:three_prime_UTR
ACTGTGGAAGATATATGGTG+TGG 0.687243 7_3:+59441988 Msa1113240:three_prime_UTR
GATTATTAAAGAATTCGTGG+AGG 0.687349 7_3:-59439677 None:intergenic
ACAGAGGAATTCAAGATACG+TGG 0.688219 7_3:+59441831 Msa1113240:three_prime_UTR
ACTCACTGGTAGGAAGAACA+GGG 0.694442 7_3:-59441042 None:intergenic
TGTGTTTGGCAAAATCATTG+TGG 0.704026 7_3:+59442414 Msa1113240:three_prime_UTR
TGAGTTTGAGAGAATCACAG+TGG 0.735669 7_3:-59442491 None:intergenic
GTGAGAGAAAGTAATGATGG+CGG 0.736980 7_3:-59439793 None:intergenic
CTCACTGGTAGGAAGAACAG+GGG 0.761648 7_3:-59441041 None:intergenic
AGGCTCTCAAGCCAACACAG+AGG 0.778427 7_3:+59441815 Msa1113240:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTACTTATGATTATATAATA+TGG - chr7_3:59440085-59440104 None:intergenic 10.0%
!!! AAAATTTTATCATGTATTTA+TGG + chr7_3:59441071-59441090 Msa1113240:intron 10.0%
!! ATATTTGTAAATTATTATAC+AGG + chr7_3:59441129-59441148 Msa1113240:intron 10.0%
!!! TTTTTTTTACAGAAAAGTTT+AGG - chr7_3:59439527-59439546 None:intergenic 15.0%
!!! AATTTGTTGTTTATATAAAC+AGG + chr7_3:59439736-59439755 Msa1113240:five_prime_UTR 15.0%
!! AATAAAGAAAAATTGAGAAA+GGG - chr7_3:59439965-59439984 None:intergenic 15.0%
!! AAATAAAGAAAAATTGAGAA+AGG - chr7_3:59439966-59439985 None:intergenic 15.0%
!! ATTAATCAAGAAAAACAAAA+GGG - chr7_3:59440007-59440026 None:intergenic 15.0%
!! AATTAATCAAGAAAAACAAA+AGG - chr7_3:59440008-59440027 None:intergenic 15.0%
!! ATGATTATATAATATGGATA+AGG - chr7_3:59440079-59440098 None:intergenic 15.0%
!!! ATACTCATTTATCTTTTTTA+TGG + chr7_3:59440531-59440550 Msa1113240:intron 15.0%
!!! TACTCATTTATCTTTTTTAT+GGG + chr7_3:59440532-59440551 Msa1113240:intron 15.0%
!!! AAAATTTTAAAATAACTCAC+TGG - chr7_3:59441059-59441078 None:intergenic 15.0%
!! AGAATAAAATAGTACTTATT+TGG + chr7_3:59442649-59442668 Msa1113240:three_prime_UTR 15.0%
!! ACACAAAATCAATTAGAATT+AGG - chr7_3:59439583-59439602 None:intergenic 20.0%
!! AATTTGAAAAGAAGAAATAG+AGG + chr7_3:59439620-59439639 Msa1113240:five_prime_UTR 20.0%
!! AATTCTTTAATAATCTGAGA+AGG + chr7_3:59439685-59439704 Msa1113240:five_prime_UTR 20.0%
!!! TCATTTTCTCAAATTATTAC+AGG - chr7_3:59440263-59440282 None:intergenic 20.0%
!! ATTTGAGAAAATGAAGTAAT+TGG + chr7_3:59440269-59440288 Msa1113240:intron 20.0%
!!! ACTCATTTATCTTTTTTATG+GGG + chr7_3:59440533-59440552 Msa1113240:intron 20.0%
!! CATACTTATTTAATCAGATA+AGG - chr7_3:59440704-59440723 None:intergenic 20.0%
!! CTTATCTGATTAAATAAGTA+TGG + chr7_3:59440702-59440721 Msa1113240:intron 20.0%
!! ACTTAATTATAGACAACAAA+AGG - chr7_3:59440821-59440840 None:intergenic 20.0%
!! TATAGTGTATTAAAGAAGAA+AGG - chr7_3:59441673-59441692 None:intergenic 20.0%
!! TTTTACAGAAAAGTTTAGGT+GGG - chr7_3:59439523-59439542 None:intergenic 25.0%
!! TTTTTACAGAAAAGTTTAGG+TGG - chr7_3:59439524-59439543 None:intergenic 25.0%
!!! ATTGATTTTGTGTTGACAAA+TGG + chr7_3:59439590-59439609 Msa1113240:five_prime_UTR 25.0%
! ATTATTAAAGAATTCGTGGA+GGG - chr7_3:59439679-59439698 None:intergenic 25.0%
! TCAGATTATTAAAGAATTCG+TGG - chr7_3:59439683-59439702 None:intergenic 25.0%
! TATAGTAGTGTATAGATCTA+TGG + chr7_3:59440034-59440053 Msa1113240:intron 25.0%
!! TAATGTTGTTTGCTTCTTTA+GGG + chr7_3:59440107-59440126 Msa1113240:intron 25.0%
! TTACAATTACTCTTGTAGTA+TGG + chr7_3:59440141-59440160 Msa1113240:intron 25.0%
! TTGTCTTTAGATGAATTTGT+TGG + chr7_3:59440195-59440214 Msa1113240:intron 25.0%
!! TACCTTGTTCTTTTTCTATT+GGG + chr7_3:59440622-59440641 Msa1113240:intron 25.0%
!!! CAGGATTTTGATTCATAATT+TGG + chr7_3:59440766-59440785 Msa1113240:intron 25.0%
! GATTTGATATATTGTAGATC+TGG + chr7_3:59440788-59440807 Msa1113240:intron 25.0%
!! TATGCTAAAGTTTCTTCTTT+TGG + chr7_3:59440857-59440876 Msa1113240:intron 25.0%
!!! TTTTAAAATAACTCACTGGT+AGG - chr7_3:59441055-59441074 None:intergenic 25.0%
! ACGAAATATATAAGCCATTA+GGG - chr7_3:59442548-59442567 None:intergenic 25.0%
! TACGAAATATATAAGCCATT+AGG - chr7_3:59442549-59442568 None:intergenic 25.0%
TGAAAAGAAGAAATAGAGGA+CGG + chr7_3:59439624-59439643 Msa1113240:five_prime_UTR 30.0%
GATTATTAAAGAATTCGTGG+AGG - chr7_3:59439680-59439699 None:intergenic 30.0%
GAGAGAATAAAAAGAATACC+AGG - chr7_3:59439897-59439916 None:intergenic 30.0%
GTAGTTACTACTAGCTAATA+AGG + chr7_3:59439936-59439955 Msa1113240:intron 30.0%
TATAATATGGATAAGGTCAC+AGG - chr7_3:59440072-59440091 None:intergenic 30.0%
! GTAATGTTGTTTGCTTCTTT+AGG + chr7_3:59440106-59440125 Msa1113240:intron 30.0%
AGATTGTAGTTGGATCATTT+AGG + chr7_3:59440454-59440473 Msa1113240:intron 30.0%
!! GTGCCATCATTTTCTTATTT+GGG + chr7_3:59440575-59440594 Msa1113240:intron 30.0%
!! CATCATTTTCTTATTTGGGA+GGG + chr7_3:59440579-59440598 Msa1113240:intron 30.0%
! GTACCTTGTTCTTTTTCTAT+TGG + chr7_3:59440621-59440640 Msa1113240:intron 30.0%
TATGAATCAAAATCCTGACA+AGG - chr7_3:59440763-59440782 None:intergenic 30.0%
GAAAATTAAGAAATGCGATG+AGG - chr7_3:59440900-59440919 None:intergenic 30.0%
TTAATTTAAGCCTGTTGAGT+TGG - chr7_3:59441207-59441226 None:intergenic 30.0%
AACTCAACAGGCTTAAATTA+AGG + chr7_3:59441206-59441225 Msa1113240:three_prime_UTR 30.0%
ATTCATTCATAAAAGGAGTG+AGG - chr7_3:59441348-59441367 None:intergenic 30.0%
! TCACTCCTTTTATGAATGAA+TGG + chr7_3:59441347-59441366 Msa1113240:three_prime_UTR 30.0%
GACTTCCATTCATTCATAAA+AGG - chr7_3:59441355-59441374 None:intergenic 30.0%
TGTATTAAAGAAGAAAGGTG+TGG - chr7_3:59441668-59441687 None:intergenic 30.0%
CTTTCATTTCTCCAAACATA+CGG - chr7_3:59442069-59442088 None:intergenic 30.0%
TATGTTTGGAGAAATGAAAG+AGG + chr7_3:59442069-59442088 Msa1113240:three_prime_UTR 30.0%
AACTTTACAGACTGAAAGAA+AGG - chr7_3:59442156-59442175 None:intergenic 30.0%
ATGGTGAGAGAAAGTAATGA+TGG - chr7_3:59439799-59439818 None:intergenic 35.0%
GATCTAGAAGAATGTGATCA+GGG - chr7_3:59439870-59439889 None:intergenic 35.0%
AGATCTAGAAGAATGTGATC+AGG - chr7_3:59439871-59439890 None:intergenic 35.0%
TACGAATGAAGTTTGAGAGA+GGG - chr7_3:59439919-59439938 None:intergenic 35.0%
GTGAAAGTTGTTGTCAAATG+TGG + chr7_3:59440374-59440393 Msa1113240:intron 35.0%
ATCTGAGAACAACTAAGACT+TGG + chr7_3:59440488-59440507 Msa1113240:intron 35.0%
TCTGAGAACAACTAAGACTT+GGG + chr7_3:59440489-59440508 Msa1113240:intron 35.0%
! GGGTTGAATTGATAGTTATG+TGG + chr7_3:59440553-59440572 Msa1113240:intron 35.0%
!! GGTGCCATCATTTTCTTATT+TGG + chr7_3:59440574-59440593 Msa1113240:intron 35.0%
CCTCCCAAATAAGAAAATGA+TGG - chr7_3:59440581-59440600 None:intergenic 35.0%
!! CCATCATTTTCTTATTTGGG+AGG + chr7_3:59440578-59440597 Msa1113240:intron 35.0%
AGCCCAATAGAAAAAGAACA+AGG - chr7_3:59440627-59440646 None:intergenic 35.0%
TCAAATCTTTACAGCATCTG+GGG - chr7_3:59440681-59440700 None:intergenic 35.0%
GTCAAATCTTTACAGCATCT+GGG - chr7_3:59440682-59440701 None:intergenic 35.0%
! TTTTCAGCAGCCATAGAATT+TGG + chr7_3:59440737-59440756 Msa1113240:intron 35.0%
AATTAAGAAATGCGATGAGG+AGG - chr7_3:59440897-59440916 None:intergenic 35.0%
CTTTCAATATTCTCTGCACA+TGG - chr7_3:59440922-59440941 None:intergenic 35.0%
CTGAAACTGTTTATAGCAAC+TGG + chr7_3:59440965-59440984 Msa1113240:CDS 35.0%
! GTTTATAGCAACTGGTAATG+AGG + chr7_3:59440973-59440992 Msa1113240:CDS 35.0%
TCAACAGGCTTAAATTAAGG+CGG + chr7_3:59441209-59441228 Msa1113240:three_prime_UTR 35.0%
CACAAACCAAAAGTCTAGAT+TGG - chr7_3:59441235-59441254 None:intergenic 35.0%
ATTACTTGAGACATCTTGTG+AGG - chr7_3:59441277-59441296 None:intergenic 35.0%
AACGAAGTTGACATTGTGAT+CGG + chr7_3:59441307-59441326 Msa1113240:three_prime_UTR 35.0%
TGACTATTATCAGGTGGAAA+CGG - chr7_3:59441387-59441406 None:intergenic 35.0%
GATCTTTGACTATTATCAGG+TGG - chr7_3:59441393-59441412 None:intergenic 35.0%
CAGGATCTTTGACTATTATC+AGG - chr7_3:59441396-59441415 None:intergenic 35.0%
! AATTTGGAGTTCTTCCTTGA+GGG - chr7_3:59441419-59441438 None:intergenic 35.0%
! GGTTACGCTTGTAGATATTT+TGG + chr7_3:59441520-59441539 Msa1113240:three_prime_UTR 35.0%
ACTATATGATCCATTCCGTA+AGG + chr7_3:59441687-59441706 Msa1113240:three_prime_UTR 35.0%
CTATATGATCCATTCCGTAA+GGG + chr7_3:59441688-59441707 Msa1113240:three_prime_UTR 35.0%
TATCTTGAATTCCTCTGTGT+TGG - chr7_3:59441829-59441848 None:intergenic 35.0%
TTCTTTCTTCAAGCTGTCTA+TGG - chr7_3:59442100-59442119 None:intergenic 35.0%
TAGACAGCTTGAAGAAAGAA+TGG + chr7_3:59442100-59442119 Msa1113240:three_prime_UTR 35.0%
AGACAGCTTGAAGAAAGAAT+GGG + chr7_3:59442101-59442120 Msa1113240:three_prime_UTR 35.0%
! AAGTTGTTCCTTCACTGATT+TGG - chr7_3:59442223-59442242 None:intergenic 35.0%
AAATCAGTGAAGGAACAACT+TGG + chr7_3:59442222-59442241 Msa1113240:three_prime_UTR 35.0%
AATCAGTGAAGGAACAACTT+GGG + chr7_3:59442223-59442242 Msa1113240:three_prime_UTR 35.0%
GAGTGAGTGAATGTTTAGAT+TGG + chr7_3:59442388-59442407 Msa1113240:three_prime_UTR 35.0%
!! GTTTAGATTGGTGATGTGTT+TGG + chr7_3:59442400-59442419 Msa1113240:three_prime_UTR 35.0%
TGTGTTTGGCAAAATCATTG+TGG + chr7_3:59442414-59442433 Msa1113240:three_prime_UTR 35.0%
GTGTTTGGCAAAATCATTGT+GGG + chr7_3:59442415-59442434 Msa1113240:three_prime_UTR 35.0%
TAAAGCTTCCGCAAAAATCA+CGG - chr7_3:59442442-59442461 None:intergenic 35.0%
TGTTGTCTTGCTTTACCATT+TGG + chr7_3:59442692-59442711 Msa1113240:three_prime_UTR 35.0%
! CAGAAAAGTTTAGGTGGGTT+CGG - chr7_3:59439518-59439537 None:intergenic 40.0%
GGAAAGAACACAGAGATTGA+TGG + chr7_3:59439645-59439664 Msa1113240:five_prime_UTR 40.0%
CTGAGAAGGAGAGAGAAAAT+AGG + chr7_3:59439699-59439718 Msa1113240:five_prime_UTR 40.0%
GTGAGAGAAAGTAATGATGG+CGG - chr7_3:59439796-59439815 None:intergenic 40.0%
CATTCTTCTAGATCTCTTCC+TGG + chr7_3:59439876-59439895 Msa1113240:CDS 40.0%
CTACGAATGAAGTTTGAGAG+AGG - chr7_3:59439920-59439939 None:intergenic 40.0%
!! GTTGACACACCTTTGATTTG+AGG + chr7_3:59440306-59440325 Msa1113240:intron 40.0%
GCACTAACACCTCAAATCAA+AGG - chr7_3:59440318-59440337 None:intergenic 40.0%
! ATTTGAGGTGTTAGTGCTAG+AGG + chr7_3:59440321-59440340 Msa1113240:intron 40.0%
CACAATGTGCACGCAATTAA+GGG - chr7_3:59440408-59440427 None:intergenic 40.0%
GTTGCAGTCTAGATTGTAGT+TGG + chr7_3:59440444-59440463 Msa1113240:intron 40.0%
GGTCAAATCTTTACAGCATC+TGG - chr7_3:59440683-59440702 None:intergenic 40.0%
GCTGCTGAAAAATTGTCAAC+AGG - chr7_3:59440728-59440747 None:intergenic 40.0%
GTGCAGAGAATATTGAAAGC+TGG + chr7_3:59440923-59440942 Msa1113240:intron 40.0%
ACGTTTGAATCCAACTCAAC+AGG + chr7_3:59441194-59441213 Msa1113240:three_prime_UTR 40.0%
GACTATTATCAGGTGGAAAC+GGG - chr7_3:59441386-59441405 None:intergenic 40.0%
! GAATTTGGAGTTCTTCCTTG+AGG - chr7_3:59441420-59441439 None:intergenic 40.0%
CACTAAATCCTTCGGGAATT+TGG - chr7_3:59441435-59441454 None:intergenic 40.0%
ACATCTGCACTAAATCCTTC+GGG - chr7_3:59441442-59441461 None:intergenic 40.0%
GACATCTGCACTAAATCCTT+CGG - chr7_3:59441443-59441462 None:intergenic 40.0%
!! AAACTCTGAAATTGAGCGAG+TGG + chr7_3:59441468-59441487 Msa1113240:three_prime_UTR 40.0%
! TAAAGAAGAAAGGTGTGGCA+GGG - chr7_3:59441663-59441682 None:intergenic 40.0%
! TTAAAGAAGAAAGGTGTGGC+AGG - chr7_3:59441664-59441683 None:intergenic 40.0%
GAACAAAATCTGCACCCTTA+CGG - chr7_3:59441705-59441724 None:intergenic 40.0%
ACAGAGGAATTCAAGATACG+TGG + chr7_3:59441831-59441850 Msa1113240:three_prime_UTR 40.0%
GCCTTTAACCGAGAATTAGT+TGG + chr7_3:59441910-59441929 Msa1113240:three_prime_UTR 40.0%
GCCAACTAATTCTCGGTTAA+AGG - chr7_3:59441914-59441933 None:intergenic 40.0%
GGGAAACTGTGGAAGATATA+TGG + chr7_3:59441983-59442002 Msa1113240:three_prime_UTR 40.0%
ACTGTGGAAGATATATGGTG+TGG + chr7_3:59441988-59442007 Msa1113240:three_prime_UTR 40.0%
AGCTTGAAGAAAGAATGGGA+AGG + chr7_3:59442105-59442124 Msa1113240:three_prime_UTR 40.0%
GCTTGAAGAAAGAATGGGAA+GGG + chr7_3:59442106-59442125 Msa1113240:three_prime_UTR 40.0%
CTTGAAGAAAGAATGGGAAG+GGG + chr7_3:59442107-59442126 Msa1113240:three_prime_UTR 40.0%
ACTATTAGTTCACGAGCTTC+AGG - chr7_3:59442325-59442344 None:intergenic 40.0%
GAAGCTCGTGAACTAATAGT+TGG + chr7_3:59442325-59442344 Msa1113240:three_prime_UTR 40.0%
TCGTGAACTAATAGTTGGCA+TGG + chr7_3:59442330-59442349 Msa1113240:three_prime_UTR 40.0%
AACTAATAGTTGGCATGGTC+TGG + chr7_3:59442335-59442354 Msa1113240:three_prime_UTR 40.0%
! GAGTTGTTTCATCCTCCATT+AGG + chr7_3:59442357-59442376 Msa1113240:three_prime_UTR 40.0%
CATCCTCCATTAGGATTTGT+AGG + chr7_3:59442366-59442385 Msa1113240:three_prime_UTR 40.0%
ACTCCTACAAATCCTAATGG+AGG - chr7_3:59442372-59442391 None:intergenic 40.0%
CTCACTCCTACAAATCCTAA+TGG - chr7_3:59442375-59442394 None:intergenic 40.0%
GAGTTTGAGAGAATCACAGT+GGG - chr7_3:59442493-59442512 None:intergenic 40.0%
TGAGTTTGAGAGAATCACAG+TGG - chr7_3:59442494-59442513 None:intergenic 40.0%
ATTAAGGACGGCTGAGTCAA+TGG - chr7_3:59439818-59439837 None:intergenic 45.0%
GATGTCGGAGAGATTAAGGA+CGG - chr7_3:59439830-59439849 None:intergenic 45.0%
ATCAGGGATGAGAGAGAGAT+CGG - chr7_3:59439854-59439873 None:intergenic 45.0%
AGTGCTAGAGGTTGTGTACA+AGG + chr7_3:59440333-59440352 Msa1113240:intron 45.0%
CCACAATGTGCACGCAATTA+AGG - chr7_3:59440409-59440428 None:intergenic 45.0%
CCTTAATTGCGTGCACATTG+TGG + chr7_3:59440406-59440425 Msa1113240:intron 45.0%
CCTGACAAGGCCAAATTCTA+TGG - chr7_3:59440750-59440769 None:intergenic 45.0%
!! CCATAGAATTTGGCCTTGTC+AGG + chr7_3:59440747-59440766 Msa1113240:intron 45.0%
GAACAGGGGTCACAATATGT+CGG - chr7_3:59441030-59441049 None:intergenic 45.0%
ACTCACTGGTAGGAAGAACA+GGG - chr7_3:59441045-59441064 None:intergenic 45.0%
AACTCACTGGTAGGAAGAAC+AGG - chr7_3:59441046-59441065 None:intergenic 45.0%
GAAGAACTCCAAATTCCCGA+AGG + chr7_3:59441424-59441443 Msa1113240:three_prime_UTR 45.0%
! TCTGAAATTGAGCGAGTGGT+GGG + chr7_3:59441472-59441491 Msa1113240:three_prime_UTR 45.0%
AGAGAAGCGAATAGAAGTGG+AGG - chr7_3:59441500-59441519 None:intergenic 45.0%
TCCACTTCTATTCGCTTCTC+TGG + chr7_3:59441499-59441518 Msa1113240:three_prime_UTR 45.0%
ACCAGAGAAGCGAATAGAAG+TGG - chr7_3:59441503-59441522 None:intergenic 45.0%
TGTTCCAGCAAAAGATGACG+CGG + chr7_3:59441591-59441610 Msa1113240:three_prime_UTR 45.0%
! AAAGAAGAAAGGTGTGGCAG+GGG - chr7_3:59441662-59441681 None:intergenic 45.0%
AAATCTGCACCCTTACGGAA+TGG - chr7_3:59441700-59441719 None:intergenic 45.0%
!! AAGGGTGCAGATTTTGTTCG+CGG + chr7_3:59441706-59441725 Msa1113240:three_prime_UTR 45.0%
!! GCAATGTTGATTCCACTCAC+TGG - chr7_3:59441892-59441911 None:intergenic 45.0%
ATGCTGGGCCAACTAATTCT+CGG - chr7_3:59441921-59441940 None:intergenic 45.0%
AGAATTAGTTGGCCCAGCAT+TGG + chr7_3:59441921-59441940 Msa1113240:three_prime_UTR 45.0%
! TAAGCCTCGGTGTGAAAAGT+GGG + chr7_3:59442040-59442059 Msa1113240:three_prime_UTR 45.0%
!! AAAGTGGGTTGCCGTATGTT+TGG + chr7_3:59442055-59442074 Msa1113240:three_prime_UTR 45.0%
ATGGGAAGGGGTGAAATTGA+TGG + chr7_3:59442119-59442138 Msa1113240:three_prime_UTR 45.0%
AGTGAAGGAACAACTTGGGA+AGG + chr7_3:59442227-59442246 Msa1113240:three_prime_UTR 45.0%
TCAGCGGCTTTCGAAAACAT+AGG - chr7_3:59442258-59442277 None:intergenic 45.0%
!! GTTAAGCTCTGGAAGTCAGT+TGG + chr7_3:59442294-59442313 Msa1113240:three_prime_UTR 45.0%
! TTGTGGGACCGTGATTTTTG+CGG + chr7_3:59442431-59442450 Msa1113240:three_prime_UTR 45.0%
CAATAACCAGGGTGCATGTT+TGG - chr7_3:59442525-59442544 None:intergenic 45.0%
AGCCATTAGGGCAATAACCA+GGG - chr7_3:59442536-59442555 None:intergenic 45.0%
AAGCCATTAGGGCAATAACC+AGG - chr7_3:59442537-59442556 None:intergenic 45.0%
GCGTGACTGAGTTAGATTGA+AGG + chr7_3:59442624-59442643 Msa1113240:three_prime_UTR 45.0%
CGGAGATGTCGGAGAGATTA+AGG - chr7_3:59439834-59439853 None:intergenic 50.0%
GAGAGAGAGATCGGAGATGT+CGG - chr7_3:59439845-59439864 None:intergenic 50.0%
CTCACTGGTAGGAAGAACAG+GGG - chr7_3:59441044-59441063 None:intergenic 50.0%
! AGGCGGCCAATCTAGACTTT+TGG + chr7_3:59441226-59441245 Msa1113240:three_prime_UTR 50.0%
AGTCAAAGATCCTGCCCTCA+AGG + chr7_3:59441402-59441421 Msa1113240:three_prime_UTR 50.0%
!! CTCTGAAATTGAGCGAGTGG+TGG + chr7_3:59441471-59441490 Msa1113240:three_prime_UTR 50.0%
GTTCCAGCAAAAGATGACGC+GGG + chr7_3:59441592-59441611 Msa1113240:three_prime_UTR 50.0%
TTCCAGCAAAAGATGACGCG+GGG + chr7_3:59441593-59441612 Msa1113240:three_prime_UTR 50.0%
GGGGAATGTAGTAGATGCTG+TGG + chr7_3:59441612-59441631 Msa1113240:three_prime_UTR 50.0%
TACCCATTTAGCCTCCGAAG+TGG + chr7_3:59441730-59441749 Msa1113240:three_prime_UTR 50.0%
ACCCATTTAGCCTCCGAAGT+GGG + chr7_3:59441731-59441750 Msa1113240:three_prime_UTR 50.0%
GAGCACAATCAACCCCACTT+CGG - chr7_3:59441747-59441766 None:intergenic 50.0%
GTTGATTGTGCTCTGTCGTG+TGG + chr7_3:59441754-59441773 Msa1113240:three_prime_UTR 50.0%
CAACATGGCTCTCGTAGGAA+CGG - chr7_3:59441869-59441888 None:intergenic 50.0%
GATTCCACTCACTGGCAACA+TGG - chr7_3:59441884-59441903 None:intergenic 50.0%
! ATTGGTCCCAGCTTTGGTGT+TGG + chr7_3:59441939-59441958 Msa1113240:three_prime_UTR 50.0%
AGGAGAAGGAAAGCTCAGGT+GGG + chr7_3:59441963-59441982 Msa1113240:three_prime_UTR 50.0%
AAAGCTCAGGTGGGAAACTG+TGG + chr7_3:59441972-59441991 Msa1113240:three_prime_UTR 50.0%
! TTTTCACACCGAGGCTTAGG+TGG - chr7_3:59442038-59442057 None:intergenic 50.0%
! CACTTTTCACACCGAGGCTT+AGG - chr7_3:59442041-59442060 None:intergenic 50.0%
! CTAAGCCTCGGTGTGAAAAG+TGG + chr7_3:59442039-59442058 Msa1113240:three_prime_UTR 50.0%
GGAAGGGGTGAAATTGATGG+AGG + chr7_3:59442122-59442141 Msa1113240:three_prime_UTR 50.0%
CGAGATGGCCAAATCAGTGA+AGG + chr7_3:59442212-59442231 Msa1113240:three_prime_UTR 50.0%
GTGAATCCAAACATGCACCC+TGG + chr7_3:59442516-59442535 Msa1113240:three_prime_UTR 50.0%
CACCCTGGTTATTGCCCTAA+TGG + chr7_3:59442531-59442550 Msa1113240:three_prime_UTR 50.0%
TTGCGTGCACATTGTGGCTG+CGG + chr7_3:59440412-59440431 Msa1113240:intron 55.0%
TGGAGTTCTTCCTTGAGGGC+AGG - chr7_3:59441415-59441434 None:intergenic 55.0%
! TTCCCCGCGTCATCTTTTGC+TGG - chr7_3:59441598-59441617 None:intergenic 55.0%
CCCCACTTCGGAGGCTAAAT+GGG - chr7_3:59441735-59441754 None:intergenic 55.0%
CCCATTTAGCCTCCGAAGTG+GGG + chr7_3:59441732-59441751 Msa1113240:three_prime_UTR 55.0%
ACCCCACTTCGGAGGCTAAA+TGG - chr7_3:59441736-59441755 None:intergenic 55.0%
CACAATCAACCCCACTTCGG+AGG - chr7_3:59441744-59441763 None:intergenic 55.0%
! GTGTGGACTGTGGCTCAATC+TGG + chr7_3:59441771-59441790 Msa1113240:three_prime_UTR 55.0%
AGACCTAGATGCGCCAACAC+AGG + chr7_3:59441795-59441814 Msa1113240:three_prime_UTR 55.0%
!! GTTGGCTTGAGAGCCTGTGT+TGG - chr7_3:59441811-59441830 None:intergenic 55.0%
AGGCTCTCAAGCCAACACAG+AGG + chr7_3:59441815-59441834 Msa1113240:three_prime_UTR 55.0%
ACTGGCAACATGGCTCTCGT+AGG - chr7_3:59441874-59441893 None:intergenic 55.0%
AGAGCCATGTTGCCAGTGAG+TGG + chr7_3:59441877-59441896 Msa1113240:three_prime_UTR 55.0%
CCAAAGCTGGGACCAATGCT+GGG - chr7_3:59441936-59441955 None:intergenic 55.0%
ACCAAAGCTGGGACCAATGC+TGG - chr7_3:59441937-59441956 None:intergenic 55.0%
CTCCTGCCAACACCAAAGCT+GGG - chr7_3:59441948-59441967 None:intergenic 55.0%
TCTCCTGCCAACACCAAAGC+TGG - chr7_3:59441949-59441968 None:intergenic 55.0%
!! GCTTTGGTGTTGGCAGGAGA+AGG + chr7_3:59441949-59441968 Msa1113240:three_prime_UTR 55.0%
TGGCAGGAGAAGGAAAGCTC+AGG + chr7_3:59441959-59441978 Msa1113240:three_prime_UTR 55.0%
CAGGAGAAGGAAAGCTCAGG+TGG + chr7_3:59441962-59441981 Msa1113240:three_prime_UTR 55.0%
GTATGCGACCACCTAAGCCT+CGG + chr7_3:59442027-59442046 Msa1113240:three_prime_UTR 55.0%
!! GCAACCCACTTTTCACACCG+AGG - chr7_3:59442047-59442066 None:intergenic 55.0%
TCTGGCGTCGTAGCTGATTG+TGG - chr7_3:59442180-59442199 None:intergenic 55.0%
ACAATCAGCTACGACGCCAG+AGG + chr7_3:59442179-59442198 Msa1113240:three_prime_UTR 55.0%
TTCGAAAGCCGCTGATGCCA+TGG + chr7_3:59442263-59442282 Msa1113240:three_prime_UTR 55.0%
GAGCTTAACCCACTCTGCCA+TGG - chr7_3:59442283-59442302 None:intergenic 55.0%
!! TGGCAGAGTGGGTTAAGCTC+TGG + chr7_3:59442283-59442302 Msa1113240:three_prime_UTR 55.0%
AAGGTGTGGCAGGGGTCTTG+AGG - chr7_3:59441654-59441673 None:intergenic 60.0%
! GTGCTCTGTCGTGTGGACTG+TGG + chr7_3:59441761-59441780 Msa1113240:three_prime_UTR 60.0%
! GAGCCTGTGTTGGCGCATCT+AGG - chr7_3:59441801-59441820 None:intergenic 60.0%
!! CCCAGCATTGGTCCCAGCTT+TGG + chr7_3:59441933-59441952 Msa1113240:three_prime_UTR 60.0%
!! GTCCCAGCTTTGGTGTTGGC+AGG + chr7_3:59441943-59441962 Msa1113240:three_prime_UTR 60.0%
ATCTCGACCACGCAGTCCTC+TGG - chr7_3:59442198-59442217 None:intergenic 60.0%
AGAGGACTGCGTGGTCGAGA+TGG + chr7_3:59442197-59442216 Msa1113240:three_prime_UTR 60.0%
CCACTCTGCCATGGCATCAG+CGG - chr7_3:59442274-59442293 None:intergenic 60.0%
CGCTGATGCCATGGCAGAGT+GGG + chr7_3:59442272-59442291 Msa1113240:three_prime_UTR 60.0%
TACGACGCCAGAGGACTGCG+TGG + chr7_3:59442188-59442207 Msa1113240:three_prime_UTR 65.0%
CCGCTGATGCCATGGCAGAG+TGG + chr7_3:59442271-59442290 Msa1113240:three_prime_UTR 65.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 59439514 59442727 59439514 ID=Msa1113240;Name=Msa1113240
chr7_3 mRNA 59439514 59442727 59439514 ID=Msa1113240-mRNA-1;Parent=Msa1113240;Name=Msa1113240-mRNA-1;_AED=0.00;_eAED=0.00;_QI=270|1|1|1|1|1|3|1557|87
chr7_3 exon 59439514 59439897 59439514 ID=Msa1113240-mRNA-1:exon:13161;Parent=Msa1113240-mRNA-1
chr7_3 exon 59440929 59441058 59440929 ID=Msa1113240-mRNA-1:exon:13162;Parent=Msa1113240-mRNA-1
chr7_3 exon 59441151 59442727 59441151 ID=Msa1113240-mRNA-1:exon:13163;Parent=Msa1113240-mRNA-1
chr7_3 five_prime_UTR 59439514 59439783 59439514 ID=Msa1113240-mRNA-1:five_prime_utr;Parent=Msa1113240-mRNA-1
chr7_3 CDS 59439784 59439897 59439784 ID=Msa1113240-mRNA-1:cds;Parent=Msa1113240-mRNA-1
chr7_3 CDS 59440929 59441058 59440929 ID=Msa1113240-mRNA-1:cds;Parent=Msa1113240-mRNA-1
chr7_3 CDS 59441151 59441170 59441151 ID=Msa1113240-mRNA-1:cds;Parent=Msa1113240-mRNA-1
chr7_3 three_prime_UTR 59441171 59442727 59441171 ID=Msa1113240-mRNA-1:three_prime_utr;Parent=Msa1113240-mRNA-1
Gene Sequence

>Msa1113240

ATGAAAACACCGCCATCATTACTTTCTCTCACCATTGACTCAGCCGTCCTTAATCTCTCCGACATCTCCGATCTCTCTCTCATCCCTGATCACATTCTTCTAGATCTCTTCCTGAGAATATTGAAAGCTGGAAAGCTGACTGAAAAAGTTCTGAAACTGTTTATAGCAACTGGTAATGAGGAAGTAATTGCACTTGTTCAAGCACTGAATATCCGACATATTGTGACCCCTGTTCTTCCTACCAGATGTTCTGAGAAATTCTAA
Protein sequence

>Msa1113240

MKTPPSLLSLTIDSAVLNLSDISDLSLIPDHILLDLFLRILKAGKLTEKVLKLFIATGNEEVIALVQALNIRHIVTPVLPTRCSEKF*