Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1113640 | AES69643.1 | 64.819 | 415 | 108 | 5 | 1 | 377 | 1 | 415 | 1.01e-172 | 498 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1113640 | sp|Q84JD5|P2C68_ARATH | 46.286 | 350 | 145 | 9 | 28 | 337 | 43 | 389 | 3.74e-87 | 271 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1113640 | G7IX27 | 64.819 | 415 | 108 | 5 | 1 | 377 | 1 | 415 | 4.84e-173 | 498 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1113640 | Msa1160060 | 0.824529 | 7.685258e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1113640 | MtrunA17_Chr7g0256751 | 64.891 | 413 | 104 | 6 | 1 | 372 | 1 | 413 | 3.27e-172 | 487 |
| Msa1113640 | MtrunA17_Chr3g0089711 | 67.135 | 356 | 80 | 4 | 1 | 319 | 1 | 356 | 8.59e-161 | 455 |
| Msa1113640 | MtrunA17_Chr3g0089721 | 67.232 | 354 | 79 | 4 | 1 | 317 | 1 | 354 | 6.07e-160 | 453 |
| Msa1113640 | MtrunA17_Chr7g0256771 | 65.436 | 298 | 89 | 3 | 1 | 284 | 1 | 298 | 1.74e-129 | 374 |
| Msa1113640 | MtrunA17_Chr3g0089691 | 63.481 | 293 | 70 | 4 | 92 | 347 | 6 | 298 | 9.16e-116 | 338 |
| Msa1113640 | MtrunA17_Chr1g0175381 | 45.251 | 358 | 158 | 9 | 14 | 336 | 26 | 380 | 2.69e-94 | 287 |
| Msa1113640 | MtrunA17_Chr7g0256761 | 67.358 | 193 | 34 | 4 | 155 | 322 | 5 | 193 | 1.30e-75 | 232 |
| Msa1113640 | MtrunA17_Chr1g0181901 | 38.770 | 374 | 151 | 10 | 26 | 328 | 27 | 393 | 5.44e-67 | 217 |
| Msa1113640 | MtrunA17_Chr1g0211251 | 39.296 | 341 | 157 | 8 | 21 | 316 | 27 | 362 | 1.63e-66 | 216 |
| Msa1113640 | MtrunA17_Chr7g0263281 | 39.198 | 324 | 153 | 7 | 33 | 314 | 29 | 350 | 2.60e-66 | 214 |
| Msa1113640 | MtrunA17_Chr1g0213351 | 38.953 | 344 | 163 | 9 | 12 | 310 | 14 | 355 | 3.05e-66 | 214 |
| Msa1113640 | MtrunA17_Chr8g0371321 | 38.192 | 343 | 166 | 9 | 36 | 334 | 40 | 380 | 1.36e-65 | 213 |
| Msa1113640 | MtrunA17_Chr2g0294291 | 39.198 | 324 | 160 | 7 | 33 | 321 | 41 | 362 | 5.59e-65 | 211 |
| Msa1113640 | MtrunA17_Chr7g0250061 | 40.248 | 323 | 149 | 8 | 36 | 316 | 37 | 357 | 8.62e-64 | 208 |
| Msa1113640 | MtrunA17_Chr1g0207571 | 39.169 | 337 | 158 | 10 | 12 | 311 | 13 | 339 | 2.22e-62 | 204 |
| Msa1113640 | MtrunA17_Chr4g0063111 | 36.857 | 350 | 156 | 11 | 37 | 348 | 48 | 370 | 1.60e-52 | 182 |
| Msa1113640 | MtrunA17_Chr4g0063051 | 31.611 | 329 | 169 | 9 | 40 | 337 | 33 | 336 | 2.92e-43 | 153 |
| Msa1113640 | MtrunA17_Chr4g0062951 | 38.983 | 177 | 87 | 6 | 109 | 264 | 7 | 183 | 7.02e-28 | 108 |
| Msa1113640 | MtrunA17_Chr3g0105371 | 33.094 | 278 | 128 | 15 | 52 | 309 | 99 | 338 | 1.40e-23 | 100 |
| Msa1113640 | MtrunA17_Chr2g0295991 | 27.761 | 335 | 168 | 11 | 47 | 309 | 144 | 476 | 2.98e-23 | 100 |
| Msa1113640 | MtrunA17_Chr3g0105351 | 33.094 | 278 | 128 | 15 | 52 | 309 | 75 | 314 | 5.20e-23 | 98.2 |
| Msa1113640 | MtrunA17_Chr7g0238501 | 27.619 | 315 | 163 | 14 | 54 | 314 | 248 | 551 | 1.02e-21 | 96.7 |
| Msa1113640 | MtrunA17_Chr5g0430481 | 30.435 | 276 | 136 | 12 | 53 | 309 | 136 | 374 | 4.77e-20 | 90.5 |
| Msa1113640 | MtrunA17_Chr4g0067301 | 25.287 | 348 | 173 | 10 | 47 | 309 | 142 | 487 | 1.91e-19 | 89.7 |
| Msa1113640 | MtrunA17_Chr5g0407161 | 28.626 | 262 | 150 | 10 | 58 | 311 | 115 | 347 | 5.93e-19 | 87.4 |
| Msa1113640 | MtrunA17_Chr5g0426141 | 29.455 | 275 | 158 | 11 | 39 | 307 | 35 | 279 | 2.51e-18 | 84.3 |
| Msa1113640 | MtrunA17_Chr4g0039061 | 26.861 | 309 | 170 | 12 | 54 | 314 | 187 | 487 | 1.05e-17 | 84.3 |
| Msa1113640 | MtrunA17_Chr3g0136711 | 29.365 | 252 | 128 | 9 | 68 | 307 | 65 | 278 | 2.32e-17 | 81.6 |
| Msa1113640 | MtrunA17_Chr1g0150451 | 28.676 | 272 | 141 | 10 | 51 | 307 | 88 | 321 | 5.72e-17 | 81.3 |
| Msa1113640 | MtrunA17_Chr3g0115851 | 28.520 | 277 | 158 | 12 | 39 | 307 | 35 | 279 | 2.40e-16 | 78.6 |
| Msa1113640 | MtrunA17_Chr2g0317021 | 31.855 | 248 | 131 | 11 | 68 | 309 | 117 | 332 | 3.64e-16 | 79.0 |
| Msa1113640 | MtrunA17_Chr4g0050381 | 29.455 | 275 | 158 | 12 | 39 | 307 | 30 | 274 | 8.94e-16 | 77.0 |
| Msa1113640 | MtrunA17_Chr3g0138281 | 27.037 | 270 | 151 | 10 | 68 | 320 | 121 | 361 | 8.33e-15 | 75.1 |
| Msa1113640 | MtrunA17_Chr4g0051661 | 28.000 | 275 | 148 | 12 | 48 | 309 | 160 | 397 | 3.41e-14 | 73.6 |
| Msa1113640 | MtrunA17_Chr3g0126511 | 27.341 | 267 | 147 | 10 | 53 | 307 | 107 | 338 | 3.76e-14 | 73.2 |
| Msa1113640 | MtrunA17_Chr4g0070871 | 29.114 | 237 | 132 | 8 | 53 | 279 | 238 | 448 | 4.77e-14 | 73.6 |
| Msa1113640 | MtrunA17_Chr3g0144111 | 26.877 | 253 | 118 | 10 | 68 | 307 | 27 | 225 | 1.21e-13 | 70.5 |
| Msa1113640 | MtrunA17_Chr1g0194191 | 27.203 | 261 | 142 | 9 | 68 | 309 | 118 | 349 | 1.21e-13 | 71.6 |
| Msa1113640 | MtrunA17_Chr1g0212961 | 27.839 | 273 | 144 | 10 | 51 | 310 | 106 | 338 | 3.06e-13 | 70.1 |
| Msa1113640 | MtrunA17_Chr4g0065141 | 30.093 | 216 | 123 | 9 | 68 | 279 | 124 | 315 | 4.94e-13 | 69.7 |
| Msa1113640 | MtrunA17_Chr7g0243571 | 26.712 | 292 | 159 | 15 | 67 | 315 | 91 | 370 | 7.93e-13 | 69.3 |
| Msa1113640 | MtrunA17_Chr7g0272061 | 25.614 | 285 | 161 | 11 | 65 | 309 | 88 | 361 | 1.86e-12 | 68.2 |
| Msa1113640 | MtrunA17_Chr7g0223641 | 25.121 | 207 | 102 | 4 | 136 | 309 | 10 | 196 | 3.07e-12 | 65.5 |
| Msa1113640 | MtrunA17_Chr3g0135961 | 26.840 | 231 | 121 | 9 | 68 | 279 | 286 | 487 | 1.56e-11 | 65.9 |
| Msa1113640 | MtrunA17_Chr8g0360351 | 28.063 | 253 | 130 | 13 | 68 | 307 | 66 | 279 | 3.44e-11 | 63.5 |
| Msa1113640 | MtrunA17_Chr1g0150781 | 25.652 | 230 | 125 | 7 | 68 | 279 | 290 | 491 | 4.50e-11 | 64.3 |
| Msa1113640 | MtrunA17_Chr7g0249421 | 29.756 | 205 | 118 | 7 | 150 | 340 | 220 | 412 | 5.07e-11 | 63.9 |
| Msa1113640 | MtrunA17_Chr1g0171571 | 25.287 | 261 | 150 | 8 | 64 | 309 | 414 | 644 | 5.33e-11 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1113640 | AT5G06750.3 | 46.286 | 350 | 145 | 9 | 28 | 337 | 43 | 389 | 3.81e-88 | 271 |
| Msa1113640 | AT5G06750.1 | 46.286 | 350 | 145 | 9 | 28 | 337 | 43 | 389 | 3.81e-88 | 271 |
| Msa1113640 | AT5G66080.1 | 40.557 | 323 | 147 | 8 | 37 | 316 | 43 | 363 | 1.78e-68 | 221 |
| Msa1113640 | AT3G51370.1 | 38.906 | 329 | 157 | 8 | 24 | 310 | 28 | 354 | 2.69e-66 | 215 |
| Msa1113640 | AT3G51370.3 | 38.906 | 329 | 157 | 8 | 24 | 310 | 28 | 354 | 2.69e-66 | 215 |
| Msa1113640 | AT5G06750.2 | 46.182 | 275 | 107 | 7 | 103 | 337 | 34 | 307 | 1.10e-65 | 211 |
| Msa1113640 | AT3G17090.1 | 39.875 | 321 | 157 | 7 | 33 | 319 | 50 | 368 | 5.89e-65 | 211 |
| Msa1113640 | AT3G12620.2 | 39.181 | 342 | 162 | 9 | 37 | 334 | 45 | 384 | 2.43e-64 | 210 |
| Msa1113640 | AT3G12620.1 | 39.181 | 342 | 162 | 9 | 37 | 334 | 45 | 384 | 2.43e-64 | 210 |
| Msa1113640 | AT3G55050.1 | 40.248 | 323 | 149 | 8 | 37 | 317 | 46 | 366 | 6.80e-64 | 209 |
| Msa1113640 | AT3G55050.2 | 40.248 | 323 | 149 | 8 | 37 | 317 | 46 | 366 | 6.80e-64 | 209 |
| Msa1113640 | AT4G38520.2 | 38.889 | 324 | 152 | 9 | 36 | 316 | 42 | 362 | 1.16e-62 | 206 |
| Msa1113640 | AT4G38520.1 | 38.889 | 324 | 152 | 9 | 36 | 316 | 42 | 362 | 1.16e-62 | 206 |
| Msa1113640 | AT4G33920.1 | 39.506 | 324 | 155 | 8 | 26 | 311 | 20 | 340 | 9.93e-62 | 203 |
| Msa1113640 | AT5G02760.1 | 37.423 | 326 | 160 | 7 | 26 | 310 | 23 | 345 | 1.09e-60 | 200 |
| Msa1113640 | AT3G17090.2 | 40.824 | 267 | 143 | 5 | 33 | 286 | 50 | 314 | 1.32e-58 | 193 |
| Msa1113640 | AT5G66080.2 | 39.683 | 252 | 116 | 6 | 100 | 316 | 9 | 259 | 3.03e-50 | 170 |
| Msa1113640 | AT3G51370.2 | 38.912 | 239 | 110 | 6 | 107 | 310 | 32 | 269 | 1.41e-46 | 161 |
| Msa1113640 | AT4G33920.2 | 39.918 | 243 | 107 | 6 | 107 | 311 | 16 | 257 | 8.82e-43 | 151 |
| Msa1113640 | AT4G33920.3 | 40.351 | 228 | 97 | 6 | 122 | 311 | 1 | 227 | 1.90e-40 | 144 |
| Msa1113640 | AT3G16560.1 | 29.518 | 332 | 161 | 11 | 47 | 309 | 153 | 480 | 1.62e-27 | 113 |
| Msa1113640 | AT3G16560.4 | 29.518 | 332 | 161 | 11 | 47 | 309 | 153 | 480 | 1.62e-27 | 113 |
| Msa1113640 | AT3G16560.2 | 29.518 | 332 | 161 | 11 | 47 | 309 | 153 | 480 | 1.62e-27 | 113 |
| Msa1113640 | AT3G16560.3 | 30.435 | 276 | 144 | 8 | 47 | 278 | 153 | 424 | 5.21e-24 | 103 |
| Msa1113640 | AT2G40180.1 | 32.624 | 282 | 128 | 16 | 53 | 309 | 141 | 385 | 1.29e-22 | 98.6 |
| Msa1113640 | AT3G51470.2 | 29.231 | 260 | 138 | 10 | 61 | 307 | 55 | 281 | 9.71e-20 | 89.4 |
| Msa1113640 | AT3G51470.1 | 29.231 | 260 | 138 | 10 | 61 | 307 | 99 | 325 | 1.35e-19 | 89.4 |
| Msa1113640 | AT1G67820.1 | 31.799 | 239 | 111 | 11 | 53 | 277 | 133 | 333 | 1.73e-18 | 87.0 |
| Msa1113640 | AT1G67820.2 | 31.102 | 254 | 117 | 12 | 53 | 286 | 97 | 312 | 1.79e-18 | 86.7 |
| Msa1113640 | AT4G28400.3 | 32.099 | 243 | 133 | 11 | 68 | 307 | 45 | 258 | 2.01e-18 | 84.7 |
| Msa1113640 | AT1G07160.1 | 32.270 | 282 | 126 | 14 | 53 | 309 | 135 | 376 | 2.64e-18 | 85.9 |
| Msa1113640 | AT4G28400.1 | 32.099 | 243 | 133 | 11 | 68 | 307 | 67 | 280 | 2.70e-18 | 84.7 |
| Msa1113640 | AT4G31750.1 | 29.310 | 290 | 146 | 11 | 68 | 346 | 64 | 305 | 6.67e-18 | 84.0 |
| Msa1113640 | AT4G31750.3 | 29.310 | 290 | 146 | 11 | 68 | 346 | 64 | 305 | 6.67e-18 | 84.0 |
| Msa1113640 | AT4G31750.2 | 29.749 | 279 | 140 | 10 | 68 | 335 | 64 | 297 | 1.04e-17 | 83.2 |
| Msa1113640 | AT2G25620.1 | 26.493 | 268 | 159 | 10 | 68 | 320 | 128 | 372 | 5.43e-16 | 79.3 |
| Msa1113640 | AT2G25620.2 | 26.493 | 268 | 159 | 10 | 68 | 320 | 128 | 372 | 5.43e-16 | 79.3 |
| Msa1113640 | AT1G78200.1 | 30.108 | 279 | 154 | 14 | 39 | 307 | 33 | 280 | 1.68e-15 | 76.6 |
| Msa1113640 | AT1G78200.3 | 30.108 | 279 | 154 | 14 | 39 | 307 | 33 | 280 | 1.68e-15 | 76.6 |
| Msa1113640 | AT1G78200.2 | 30.108 | 279 | 154 | 14 | 39 | 307 | 33 | 280 | 1.68e-15 | 76.6 |
| Msa1113640 | AT5G10740.1 | 27.586 | 290 | 156 | 10 | 36 | 310 | 31 | 281 | 1.84e-15 | 77.4 |
| Msa1113640 | AT5G10740.2 | 27.586 | 290 | 156 | 10 | 36 | 310 | 31 | 281 | 1.84e-15 | 77.4 |
| Msa1113640 | AT5G24940.1 | 27.304 | 293 | 153 | 11 | 36 | 310 | 31 | 281 | 1.87e-15 | 77.8 |
| Msa1113640 | AT3G15260.2 | 29.482 | 251 | 145 | 9 | 60 | 307 | 65 | 286 | 4.50e-15 | 75.5 |
| Msa1113640 | AT3G15260.1 | 29.482 | 251 | 145 | 9 | 60 | 307 | 65 | 286 | 4.50e-15 | 75.5 |
| Msa1113640 | AT1G78200.5 | 29.811 | 265 | 146 | 13 | 53 | 307 | 1 | 235 | 1.13e-14 | 73.6 |
| Msa1113640 | AT1G78200.4 | 29.811 | 265 | 146 | 13 | 53 | 307 | 1 | 235 | 1.13e-14 | 73.6 |
| Msa1113640 | AT5G53140.1 | 27.778 | 270 | 146 | 10 | 51 | 307 | 112 | 345 | 1.41e-14 | 75.1 |
| Msa1113640 | AT5G53140.2 | 27.778 | 270 | 146 | 10 | 51 | 307 | 112 | 345 | 1.41e-14 | 75.1 |
| Msa1113640 | AT1G43900.1 | 29.670 | 273 | 134 | 12 | 52 | 307 | 135 | 366 | 2.04e-13 | 71.2 |
| Msa1113640 | AT5G26010.1 | 26.119 | 268 | 174 | 8 | 62 | 312 | 67 | 327 | 4.13e-12 | 67.0 |
| Msa1113640 | AT4G26080.1 | 26.009 | 223 | 128 | 8 | 66 | 279 | 170 | 364 | 1.15e-11 | 66.2 |
| Msa1113640 | AT2G40860.4 | 24.291 | 247 | 161 | 7 | 68 | 309 | 325 | 550 | 1.35e-11 | 66.2 |
| Msa1113640 | AT2G40860.1 | 24.291 | 247 | 161 | 7 | 68 | 309 | 423 | 648 | 1.43e-11 | 66.2 |
| Msa1113640 | AT2G34740.1 | 27.018 | 285 | 163 | 14 | 36 | 307 | 80 | 332 | 1.68e-11 | 65.5 |
| Msa1113640 | AT5G59220.1 | 28.033 | 239 | 125 | 8 | 56 | 278 | 136 | 343 | 1.72e-11 | 65.9 |
| Msa1113640 | AT3G05640.2 | 27.007 | 274 | 157 | 11 | 65 | 309 | 90 | 349 | 2.98e-11 | 64.7 |
| Msa1113640 | AT3G05640.1 | 27.007 | 274 | 157 | 11 | 65 | 309 | 90 | 349 | 2.98e-11 | 64.7 |
| Msa1113640 | AT3G05640.3 | 27.007 | 274 | 157 | 11 | 65 | 309 | 90 | 349 | 2.98e-11 | 64.7 |
| Msa1113640 | AT4G32950.1 | 27.037 | 270 | 162 | 11 | 62 | 312 | 66 | 319 | 3.48e-11 | 64.3 |
Find 65 sgRNAs with CRISPR-Local
Find 184 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTAGAAATGCACTCTTTCT+TGG | 0.238372 | 7_3:+60089251 | Msa1113640:CDS |
| ATCAAGAAGCGGTTTAAAAT+AGG | 0.251256 | 7_3:+60090517 | Msa1113640:CDS |
| CAAGTTCGATTAATCTTAAA+AGG | 0.252731 | 7_3:+60089150 | Msa1113640:CDS |
| GGATATATACATACATTTCT+TGG | 0.266088 | 7_3:-60090113 | None:intergenic |
| ATTTGCCTCTGTTGGACTTT+GGG | 0.266890 | 7_3:+60090046 | Msa1113640:CDS |
| GGAGATTCGCGTGCTGTAAT+TGG | 0.298747 | 7_3:+60089641 | Msa1113640:CDS |
| GTTGGTTCATGCTGTCTTGC+TGG | 0.321500 | 7_3:+60089581 | Msa1113640:CDS |
| CTCCTTCCAAGATGCATCCT+TGG | 0.324831 | 7_3:+60089054 | None:intergenic |
| TCGATCTTCCATATTTGTAT+TGG | 0.339408 | 7_3:-60089210 | None:intergenic |
| TTTCTTATATTTGCCTCTGT+TGG | 0.359649 | 7_3:+60090038 | Msa1113640:CDS |
| TGTTCAAGCCAATACAAATA+TGG | 0.372706 | 7_3:+60089202 | Msa1113640:CDS |
| GCTGTCTTGCTGGAATTATA+TGG | 0.384290 | 7_3:+60089591 | Msa1113640:CDS |
| TATTTGCCTCTGTTGGACTT+TGG | 0.388581 | 7_3:+60090045 | Msa1113640:CDS |
| ACGCTACATGTTGCAAATCT+TGG | 0.388699 | 7_3:+60089620 | Msa1113640:CDS |
| AGAGGCGTTCACAGATGAAC+TGG | 0.397666 | 7_3:-60089307 | None:intergenic |
| TGTTAGGTTAGTAGAACTAA+TGG | 0.403623 | 7_3:+60089876 | Msa1113640:intron |
| TGAATCTAGCTCTCAGGCTC+AGG | 0.405011 | 7_3:+60090549 | Msa1113640:CDS |
| GATTCGTGCAGCGTAAATTC+AGG | 0.407720 | 7_3:-60089918 | None:intergenic |
| CCTGCTCACATTTCTTCTGT+TGG | 0.423497 | 7_3:-60090332 | None:intergenic |
| TAGTTAATCTATGGAGGAAC+AGG | 0.431471 | 7_3:+60089087 | Msa1113640:CDS |
| TTGAAAATATAGTTAATCTA+TGG | 0.432490 | 7_3:+60089078 | Msa1113640:CDS |
| AGCTATTACAGAAGAACTAT+TGG | 0.442535 | 7_3:+60089727 | Msa1113640:CDS |
| TCAAAGTCCTCGGACTCCTC+TGG | 0.461332 | 7_3:+60090576 | Msa1113640:CDS |
| GGAGTTCTTGTCAAATGAGC+AGG | 0.474040 | 7_3:+60090067 | Msa1113640:CDS |
| TTCTAGAGGCAACTTCAACT+TGG | 0.475556 | 7_3:-60089235 | None:intergenic |
| GGTCTGGATTAATTGCTTCA+AGG | 0.479306 | 7_3:+60090482 | Msa1113640:CDS |
| TGGATCGTTGCGTGTTATTG+AGG | 0.482323 | 7_3:+60089763 | Msa1113640:CDS |
| AGAGGAGTCCGAGGACTTTG+AGG | 0.488238 | 7_3:-60090574 | None:intergenic |
| AAAACTCTAGTAAACATCTC+TGG | 0.489351 | 7_3:-60089999 | None:intergenic |
| CTCAGGGCCCTCAAAGTCCT+CGG | 0.496283 | 7_3:+60090566 | Msa1113640:CDS |
| ACACCTCTAGTAGAAGATTC+AGG | 0.498845 | 7_3:-60089963 | None:intergenic |
| GAGGAGTCCGAGGACTTTGA+GGG | 0.519851 | 7_3:-60090573 | None:intergenic |
| TTGCTGGAATTATATGGAAA+GGG | 0.519886 | 7_3:+60089597 | Msa1113640:CDS |
| GGAATTTACGACGGCCATTG+TGG | 0.520086 | 7_3:+60089272 | Msa1113640:CDS |
| ATTGCATGAATCTAGCTCTC+AGG | 0.521510 | 7_3:+60090543 | Msa1113640:CDS |
| AATTATGTACGCGCCTCCTC+AGG | 0.526034 | 7_3:-60090411 | None:intergenic |
| AATCTTAAAAGGCATTGCTA+TGG | 0.529009 | 7_3:+60089161 | Msa1113640:CDS |
| GAGCCGTATCTTGAAAATGT+TGG | 0.533114 | 7_3:+60089563 | Msa1113640:CDS |
| GTCTTCGTTGAATGCAGCAA+AGG | 0.538651 | 7_3:-60089120 | None:intergenic |
| CTCTTGTCAACTGCTCAGCA+TGG | 0.545145 | 7_3:-60089685 | None:intergenic |
| TACAGAAGAACTATTGGTGA+TGG | 0.548043 | 7_3:+60089733 | Msa1113640:CDS |
| ATATAACTGAAGCTACCCTT+AGG | 0.550165 | 7_3:+60089480 | Msa1113640:CDS |
| ATTAATTGCTTCAAGGCTGA+AGG | 0.553154 | 7_3:+60090489 | Msa1113640:CDS |
| CTTGCTGGAATTATATGGAA+AGG | 0.553179 | 7_3:+60089596 | Msa1113640:CDS |
| CTCTTTCTTGGAATTTACGA+CGG | 0.555369 | 7_3:+60089263 | Msa1113640:CDS |
| CGTGTCTGATGAGCCTATGT+AGG | 0.565945 | 7_3:-60090437 | None:intergenic |
| CGTGCAAAATCTGATGGTAG+AGG | 0.568452 | 7_3:-60090460 | None:intergenic |
| TTCTAAGCCAGAGGAGTCCG+AGG | 0.570796 | 7_3:-60090583 | None:intergenic |
| CCAACAGAAGAAATGTGAGC+AGG | 0.583565 | 7_3:+60090332 | Msa1113640:CDS |
| AAAATATAGTTAATCTATGG+AGG | 0.590255 | 7_3:+60089081 | Msa1113640:CDS |
| ATTGGCTTGAACAACAGCAC+TGG | 0.592823 | 7_3:-60089192 | None:intergenic |
| GTACATAATTTGTCCTACAT+AGG | 0.595190 | 7_3:+60090424 | Msa1113640:CDS |
| GTTCCTGAATCTTCTACTAG+AGG | 0.599349 | 7_3:+60089960 | Msa1113640:CDS |
| CCAGACCGTGCAAAATCTGA+TGG | 0.601444 | 7_3:-60090466 | None:intergenic |
| CTATTGGTGATGGATAATCA+TGG | 0.604474 | 7_3:+60089743 | Msa1113640:CDS |
| GAATCTAGCTCTCAGGCTCA+GGG | 0.607148 | 7_3:+60090550 | Msa1113640:CDS |
| AAGAAAGAGTGCATTTCTAG+AGG | 0.611881 | 7_3:-60089249 | None:intergenic |
| ATTTGAGTGTTCTAAGCCAG+AGG | 0.613619 | 7_3:-60090592 | None:intergenic |
| GATTAATCGAACTTGCGAGA+GGG | 0.632075 | 7_3:-60089142 | None:intergenic |
| AGATTAATCGAACTTGCGAG+AGG | 0.639982 | 7_3:-60089143 | None:intergenic |
| ACAGAAGAAATGTGAGCAGG+AGG | 0.642910 | 7_3:+60090335 | Msa1113640:CDS |
| GAGGCGTTCACAGATGAACT+GGG | 0.645678 | 7_3:-60089306 | None:intergenic |
| TGAAGGATCGTATCAAGAAG+CGG | 0.663488 | 7_3:+60090506 | Msa1113640:CDS |
| GGGAAGCTTTAACGCCACAA+TGG | 0.674244 | 7_3:-60089286 | None:intergenic |
| GAACTCCCAAAGTCCAACAG+AGG | 0.710237 | 7_3:-60090051 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTGTATTTCTTTTAAT+CGG | + | chr7_3:60089788-60089807 | Msa1113640:intron | 10.0% |
| !!! | TTTTTTGTATTTCTTTTAAT+CGG | + | chr7_3:60089788-60089807 | Msa1113640:intron | 10.0% |
| !! | TTGAAAATATAGTTAATCTA+TGG | + | chr7_3:60089078-60089097 | Msa1113640:CDS | 15.0% |
| !! | TGATAATTTATTATGTTATG+TGG | + | chr7_3:60089422-60089441 | Msa1113640:intron | 15.0% |
| !! | TTGAAAATATAGTTAATCTA+TGG | + | chr7_3:60089078-60089097 | Msa1113640:CDS | 15.0% |
| !! | TGATAATTTATTATGTTATG+TGG | + | chr7_3:60089422-60089441 | Msa1113640:intron | 15.0% |
| !! | AAAATATAGTTAATCTATGG+AGG | + | chr7_3:60089081-60089100 | Msa1113640:CDS | 20.0% |
| !!! | TGTTTTCTTGTATATTTGTT+AGG | + | chr7_3:60089860-60089879 | Msa1113640:intron | 20.0% |
| !!! | TCAGGAACTTTTTTAAAATT+TGG | - | chr7_3:60089948-60089967 | None:intergenic | 20.0% |
| !! | AAAATATAGTTAATCTATGG+AGG | + | chr7_3:60089081-60089100 | Msa1113640:CDS | 20.0% |
| !!! | TGTTTTCTTGTATATTTGTT+AGG | + | chr7_3:60089860-60089879 | Msa1113640:intron | 20.0% |
| !!! | TCAGGAACTTTTTTAAAATT+TGG | - | chr7_3:60089948-60089967 | None:intergenic | 20.0% |
| !!! | TTAACTATATTTTCAAGCCA+AGG | - | chr7_3:60089074-60089093 | None:intergenic | 25.0% |
| ! | CAAGTTCGATTAATCTTAAA+AGG | + | chr7_3:60089150-60089169 | Msa1113640:CDS | 25.0% |
| !! | ATTTATTGAACTCTGTTTCT+TGG | + | chr7_3:60089387-60089406 | Msa1113640:intron | 25.0% |
| ! | ATGTTATGTGGTTACATTAT+AGG | + | chr7_3:60089434-60089453 | Msa1113640:intron | 25.0% |
| ! | TGTTATGTGGTTACATTATA+GGG | + | chr7_3:60089435-60089454 | Msa1113640:intron | 25.0% |
| ! | GTGATTGTTTCATTTGATAT+TGG | + | chr7_3:60089821-60089840 | Msa1113640:intron | 25.0% |
| ! | GGATATATACATACATTTCT+TGG | - | chr7_3:60090116-60090135 | None:intergenic | 25.0% |
| ! | AAAAGAACAAGTCATAGATA+TGG | - | chr7_3:60090137-60090156 | None:intergenic | 25.0% |
| !!! | GTGTTTTTTCACAATACAAA+AGG | - | chr7_3:60090170-60090189 | None:intergenic | 25.0% |
| ! | TGTATTGTGAAAAAACACAA+AGG | + | chr7_3:60090172-60090191 | Msa1113640:intron | 25.0% |
| !!! | TTAACTATATTTTCAAGCCA+AGG | - | chr7_3:60089074-60089093 | None:intergenic | 25.0% |
| ! | CAAGTTCGATTAATCTTAAA+AGG | + | chr7_3:60089150-60089169 | Msa1113640:CDS | 25.0% |
| !! | ATTTATTGAACTCTGTTTCT+TGG | + | chr7_3:60089387-60089406 | Msa1113640:intron | 25.0% |
| ! | ATGTTATGTGGTTACATTAT+AGG | + | chr7_3:60089434-60089453 | Msa1113640:intron | 25.0% |
| ! | TGTTATGTGGTTACATTATA+GGG | + | chr7_3:60089435-60089454 | Msa1113640:intron | 25.0% |
| ! | GTGATTGTTTCATTTGATAT+TGG | + | chr7_3:60089821-60089840 | Msa1113640:intron | 25.0% |
| ! | GGATATATACATACATTTCT+TGG | - | chr7_3:60090116-60090135 | None:intergenic | 25.0% |
| ! | AAAAGAACAAGTCATAGATA+TGG | - | chr7_3:60090137-60090156 | None:intergenic | 25.0% |
| !!! | GTGTTTTTTCACAATACAAA+AGG | - | chr7_3:60090170-60090189 | None:intergenic | 25.0% |
| ! | TGTATTGTGAAAAAACACAA+AGG | + | chr7_3:60090172-60090191 | Msa1113640:intron | 25.0% |
| !! | AATCTTAAAAGGCATTGCTA+TGG | + | chr7_3:60089161-60089180 | Msa1113640:CDS | 30.0% |
| TGTTCAAGCCAATACAAATA+TGG | + | chr7_3:60089202-60089221 | Msa1113640:CDS | 30.0% | |
| TCGATCTTCCATATTTGTAT+TGG | - | chr7_3:60089213-60089232 | None:intergenic | 30.0% | |
| !! | GAACCAACATTTTCAAGATA+CGG | - | chr7_3:60089569-60089588 | None:intergenic | 30.0% |
| TTGCTGGAATTATATGGAAA+GGG | + | chr7_3:60089597-60089616 | Msa1113640:CDS | 30.0% | |
| AGCTATTACAGAAGAACTAT+TGG | + | chr7_3:60089727-60089746 | Msa1113640:CDS | 30.0% | |
| TGTTAGGTTAGTAGAACTAA+TGG | + | chr7_3:60089876-60089895 | Msa1113640:intron | 30.0% | |
| AAAACTCTAGTAAACATCTC+TGG | - | chr7_3:60090002-60090021 | None:intergenic | 30.0% | |
| TTTCTTATATTTGCCTCTGT+TGG | + | chr7_3:60090038-60090057 | Msa1113640:CDS | 30.0% | |
| !!! | TCTATGACTTGTTCTTTTCT+TGG | + | chr7_3:60090139-60090158 | Msa1113640:intron | 30.0% |
| TGGATTTAGTTATGCTATGA+TGG | + | chr7_3:60090260-60090279 | Msa1113640:intron | 30.0% | |
| !!! | AGTTATGCTATGATGGATTT+TGG | + | chr7_3:60090267-60090286 | Msa1113640:intron | 30.0% |
| !!! | GTTATGCTATGATGGATTTT+GGG | + | chr7_3:60090268-60090287 | Msa1113640:intron | 30.0% |
| ! | AAGTGTGATTGTTGTGTTTT+TGG | + | chr7_3:60090375-60090394 | Msa1113640:CDS | 30.0% |
| ! | GTACATAATTTGTCCTACAT+AGG | + | chr7_3:60090424-60090443 | Msa1113640:CDS | 30.0% |
| ! | ATCAAGAAGCGGTTTAAAAT+AGG | + | chr7_3:60090517-60090536 | Msa1113640:CDS | 30.0% |
| !! | AATCTTAAAAGGCATTGCTA+TGG | + | chr7_3:60089161-60089180 | Msa1113640:CDS | 30.0% |
| TGTTCAAGCCAATACAAATA+TGG | + | chr7_3:60089202-60089221 | Msa1113640:CDS | 30.0% | |
| TCGATCTTCCATATTTGTAT+TGG | - | chr7_3:60089213-60089232 | None:intergenic | 30.0% | |
| !! | GAACCAACATTTTCAAGATA+CGG | - | chr7_3:60089569-60089588 | None:intergenic | 30.0% |
| TTGCTGGAATTATATGGAAA+GGG | + | chr7_3:60089597-60089616 | Msa1113640:CDS | 30.0% | |
| AGCTATTACAGAAGAACTAT+TGG | + | chr7_3:60089727-60089746 | Msa1113640:CDS | 30.0% | |
| TGTTAGGTTAGTAGAACTAA+TGG | + | chr7_3:60089876-60089895 | Msa1113640:intron | 30.0% | |
| AAAACTCTAGTAAACATCTC+TGG | - | chr7_3:60090002-60090021 | None:intergenic | 30.0% | |
| TTTCTTATATTTGCCTCTGT+TGG | + | chr7_3:60090038-60090057 | Msa1113640:CDS | 30.0% | |
| !!! | TCTATGACTTGTTCTTTTCT+TGG | + | chr7_3:60090139-60090158 | Msa1113640:intron | 30.0% |
| TGGATTTAGTTATGCTATGA+TGG | + | chr7_3:60090260-60090279 | Msa1113640:intron | 30.0% | |
| !!! | AGTTATGCTATGATGGATTT+TGG | + | chr7_3:60090267-60090286 | Msa1113640:intron | 30.0% |
| !!! | GTTATGCTATGATGGATTTT+GGG | + | chr7_3:60090268-60090287 | Msa1113640:intron | 30.0% |
| ! | AAGTGTGATTGTTGTGTTTT+TGG | + | chr7_3:60090375-60090394 | Msa1113640:CDS | 30.0% |
| ! | GTACATAATTTGTCCTACAT+AGG | + | chr7_3:60090424-60090443 | Msa1113640:CDS | 30.0% |
| ! | ATCAAGAAGCGGTTTAAAAT+AGG | + | chr7_3:60090517-60090536 | Msa1113640:CDS | 30.0% |
| TAGTTAATCTATGGAGGAAC+AGG | + | chr7_3:60089087-60089106 | Msa1113640:CDS | 35.0% | |
| ! | AAGAAAGAGTGCATTTCTAG+AGG | - | chr7_3:60089252-60089271 | None:intergenic | 35.0% |
| TCTAGAAATGCACTCTTTCT+TGG | + | chr7_3:60089251-60089270 | Msa1113640:CDS | 35.0% | |
| CTCTTTCTTGGAATTTACGA+CGG | + | chr7_3:60089263-60089282 | Msa1113640:CDS | 35.0% | |
| !! | GACTCAGTAGATTTTTGAAG+AGG | - | chr7_3:60089328-60089347 | None:intergenic | 35.0% |
| ATATAACTGAAGCTACCCTT+AGG | + | chr7_3:60089480-60089499 | Msa1113640:CDS | 35.0% | |
| AGCAAAAACAGCATTCCTAA+GGG | - | chr7_3:60089498-60089517 | None:intergenic | 35.0% | |
| TAGCAAAAACAGCATTCCTA+AGG | - | chr7_3:60089499-60089518 | None:intergenic | 35.0% | |
| CTTGCTGGAATTATATGGAA+AGG | + | chr7_3:60089596-60089615 | Msa1113640:CDS | 35.0% | |
| TACAGAAGAACTATTGGTGA+TGG | + | chr7_3:60089733-60089752 | Msa1113640:CDS | 35.0% | |
| !! | CTATTGGTGATGGATAATCA+TGG | + | chr7_3:60089743-60089762 | Msa1113640:CDS | 35.0% |
| GATGACGAATTTGATTGCTT+TGG | + | chr7_3:60090240-60090259 | Msa1113640:intron | 35.0% | |
| ATTAATTGCTTCAAGGCTGA+AGG | + | chr7_3:60090489-60090508 | Msa1113640:CDS | 35.0% | |
| TAGTTAATCTATGGAGGAAC+AGG | + | chr7_3:60089087-60089106 | Msa1113640:CDS | 35.0% | |
| ! | AAGAAAGAGTGCATTTCTAG+AGG | - | chr7_3:60089252-60089271 | None:intergenic | 35.0% |
| TCTAGAAATGCACTCTTTCT+TGG | + | chr7_3:60089251-60089270 | Msa1113640:CDS | 35.0% | |
| CTCTTTCTTGGAATTTACGA+CGG | + | chr7_3:60089263-60089282 | Msa1113640:CDS | 35.0% | |
| !! | GACTCAGTAGATTTTTGAAG+AGG | - | chr7_3:60089328-60089347 | None:intergenic | 35.0% |
| ATATAACTGAAGCTACCCTT+AGG | + | chr7_3:60089480-60089499 | Msa1113640:CDS | 35.0% | |
| AGCAAAAACAGCATTCCTAA+GGG | - | chr7_3:60089498-60089517 | None:intergenic | 35.0% | |
| TAGCAAAAACAGCATTCCTA+AGG | - | chr7_3:60089499-60089518 | None:intergenic | 35.0% | |
| CTTGCTGGAATTATATGGAA+AGG | + | chr7_3:60089596-60089615 | Msa1113640:CDS | 35.0% | |
| TACAGAAGAACTATTGGTGA+TGG | + | chr7_3:60089733-60089752 | Msa1113640:CDS | 35.0% | |
| !! | CTATTGGTGATGGATAATCA+TGG | + | chr7_3:60089743-60089762 | Msa1113640:CDS | 35.0% |
| GATGACGAATTTGATTGCTT+TGG | + | chr7_3:60090240-60090259 | Msa1113640:intron | 35.0% | |
| ATTAATTGCTTCAAGGCTGA+AGG | + | chr7_3:60090489-60090508 | Msa1113640:CDS | 35.0% | |
| GATTAATCGAACTTGCGAGA+GGG | - | chr7_3:60089145-60089164 | None:intergenic | 40.0% | |
| AGATTAATCGAACTTGCGAG+AGG | - | chr7_3:60089146-60089165 | None:intergenic | 40.0% | |
| ! | TTCTAGAGGCAACTTCAACT+TGG | - | chr7_3:60089238-60089257 | None:intergenic | 40.0% |
| !!! | TGCTGTTTTTGCTACTGAAG+AGG | + | chr7_3:60089505-60089524 | Msa1113640:CDS | 40.0% |
| !!! | GCTGTTTTTGCTACTGAAGA+GGG | + | chr7_3:60089506-60089525 | Msa1113640:CDS | 40.0% |
| !!! | TGCTACTGAAGAGGGTTTTT+TGG | + | chr7_3:60089514-60089533 | Msa1113640:CDS | 40.0% |
| GAGCCGTATCTTGAAAATGT+TGG | + | chr7_3:60089563-60089582 | Msa1113640:CDS | 40.0% | |
| GCTGTCTTGCTGGAATTATA+TGG | + | chr7_3:60089591-60089610 | Msa1113640:CDS | 40.0% | |
| ACGCTACATGTTGCAAATCT+TGG | + | chr7_3:60089620-60089639 | Msa1113640:CDS | 40.0% | |
| GTTCCTGAATCTTCTACTAG+AGG | + | chr7_3:60089960-60089979 | Msa1113640:CDS | 40.0% | |
| ACACCTCTAGTAGAAGATTC+AGG | - | chr7_3:60089966-60089985 | None:intergenic | 40.0% | |
| TATTTGCCTCTGTTGGACTT+TGG | + | chr7_3:60090045-60090064 | Msa1113640:CDS | 40.0% | |
| ATTTGCCTCTGTTGGACTTT+GGG | + | chr7_3:60090046-60090065 | Msa1113640:CDS | 40.0% | |
| !! | GGATTTTGGGAATTGCGAAA+AGG | + | chr7_3:60090281-60090300 | Msa1113640:intron | 40.0% |
| ! | CTCTACCATCAGATTTTGCA+CGG | + | chr7_3:60090461-60090480 | Msa1113640:CDS | 40.0% |
| GGTCTGGATTAATTGCTTCA+AGG | + | chr7_3:60090482-60090501 | Msa1113640:CDS | 40.0% | |
| TGAAGGATCGTATCAAGAAG+CGG | + | chr7_3:60090506-60090525 | Msa1113640:CDS | 40.0% | |
| !! | ATTGCATGAATCTAGCTCTC+AGG | + | chr7_3:60090543-60090562 | Msa1113640:CDS | 40.0% |
| GATTAATCGAACTTGCGAGA+GGG | - | chr7_3:60089145-60089164 | None:intergenic | 40.0% | |
| AGATTAATCGAACTTGCGAG+AGG | - | chr7_3:60089146-60089165 | None:intergenic | 40.0% | |
| ! | TTCTAGAGGCAACTTCAACT+TGG | - | chr7_3:60089238-60089257 | None:intergenic | 40.0% |
| !!! | TGCTGTTTTTGCTACTGAAG+AGG | + | chr7_3:60089505-60089524 | Msa1113640:CDS | 40.0% |
| !!! | GCTGTTTTTGCTACTGAAGA+GGG | + | chr7_3:60089506-60089525 | Msa1113640:CDS | 40.0% |
| !!! | TGCTACTGAAGAGGGTTTTT+TGG | + | chr7_3:60089514-60089533 | Msa1113640:CDS | 40.0% |
| GAGCCGTATCTTGAAAATGT+TGG | + | chr7_3:60089563-60089582 | Msa1113640:CDS | 40.0% | |
| GCTGTCTTGCTGGAATTATA+TGG | + | chr7_3:60089591-60089610 | Msa1113640:CDS | 40.0% | |
| ACGCTACATGTTGCAAATCT+TGG | + | chr7_3:60089620-60089639 | Msa1113640:CDS | 40.0% | |
| GTTCCTGAATCTTCTACTAG+AGG | + | chr7_3:60089960-60089979 | Msa1113640:CDS | 40.0% | |
| ACACCTCTAGTAGAAGATTC+AGG | - | chr7_3:60089966-60089985 | None:intergenic | 40.0% | |
| TATTTGCCTCTGTTGGACTT+TGG | + | chr7_3:60090045-60090064 | Msa1113640:CDS | 40.0% | |
| ATTTGCCTCTGTTGGACTTT+GGG | + | chr7_3:60090046-60090065 | Msa1113640:CDS | 40.0% | |
| !! | GGATTTTGGGAATTGCGAAA+AGG | + | chr7_3:60090281-60090300 | Msa1113640:intron | 40.0% |
| ! | CTCTACCATCAGATTTTGCA+CGG | + | chr7_3:60090461-60090480 | Msa1113640:CDS | 40.0% |
| GGTCTGGATTAATTGCTTCA+AGG | + | chr7_3:60090482-60090501 | Msa1113640:CDS | 40.0% | |
| TGAAGGATCGTATCAAGAAG+CGG | + | chr7_3:60090506-60090525 | Msa1113640:CDS | 40.0% | |
| !! | ATTGCATGAATCTAGCTCTC+AGG | + | chr7_3:60090543-60090562 | Msa1113640:CDS | 40.0% |
| GTCTTCGTTGAATGCAGCAA+AGG | - | chr7_3:60089123-60089142 | None:intergenic | 45.0% | |
| !! | ATTGGCTTGAACAACAGCAC+TGG | - | chr7_3:60089195-60089214 | None:intergenic | 45.0% |
| ! | TGGATCGTTGCGTGTTATTG+AGG | + | chr7_3:60089763-60089782 | Msa1113640:CDS | 45.0% |
| GATTCGTGCAGCGTAAATTC+AGG | - | chr7_3:60089921-60089940 | None:intergenic | 45.0% | |
| GGAGTTCTTGTCAAATGAGC+AGG | + | chr7_3:60090067-60090086 | Msa1113640:CDS | 45.0% | |
| CCTGCTCACATTTCTTCTGT+TGG | - | chr7_3:60090335-60090354 | None:intergenic | 45.0% | |
| CCAACAGAAGAAATGTGAGC+AGG | + | chr7_3:60090332-60090351 | Msa1113640:CDS | 45.0% | |
| ACAGAAGAAATGTGAGCAGG+AGG | + | chr7_3:60090335-60090354 | Msa1113640:CDS | 45.0% | |
| TGGACAAAAAGCTGTTCCTG+AGG | + | chr7_3:60090395-60090414 | Msa1113640:CDS | 45.0% | |
| ACAAAAAGCTGTTCCTGAGG+AGG | + | chr7_3:60090398-60090417 | Msa1113640:CDS | 45.0% | |
| CGTGCAAAATCTGATGGTAG+AGG | - | chr7_3:60090463-60090482 | None:intergenic | 45.0% | |
| GTCTTCGTTGAATGCAGCAA+AGG | - | chr7_3:60089123-60089142 | None:intergenic | 45.0% | |
| !! | ATTGGCTTGAACAACAGCAC+TGG | - | chr7_3:60089195-60089214 | None:intergenic | 45.0% |
| ! | TGGATCGTTGCGTGTTATTG+AGG | + | chr7_3:60089763-60089782 | Msa1113640:CDS | 45.0% |
| GATTCGTGCAGCGTAAATTC+AGG | - | chr7_3:60089921-60089940 | None:intergenic | 45.0% | |
| GGAGTTCTTGTCAAATGAGC+AGG | + | chr7_3:60090067-60090086 | Msa1113640:CDS | 45.0% | |
| CCTGCTCACATTTCTTCTGT+TGG | - | chr7_3:60090335-60090354 | None:intergenic | 45.0% | |
| CCAACAGAAGAAATGTGAGC+AGG | + | chr7_3:60090332-60090351 | Msa1113640:CDS | 45.0% | |
| ACAGAAGAAATGTGAGCAGG+AGG | + | chr7_3:60090335-60090354 | Msa1113640:CDS | 45.0% | |
| TGGACAAAAAGCTGTTCCTG+AGG | + | chr7_3:60090395-60090414 | Msa1113640:CDS | 45.0% | |
| ACAAAAAGCTGTTCCTGAGG+AGG | + | chr7_3:60090398-60090417 | Msa1113640:CDS | 45.0% | |
| CGTGCAAAATCTGATGGTAG+AGG | - | chr7_3:60090463-60090482 | None:intergenic | 45.0% | |
| GGAATTTACGACGGCCATTG+TGG | + | chr7_3:60089272-60089291 | Msa1113640:CDS | 50.0% | |
| ! | GGGAAGCTTTAACGCCACAA+TGG | - | chr7_3:60089289-60089308 | None:intergenic | 50.0% |
| ! | GAGGCGTTCACAGATGAACT+GGG | - | chr7_3:60089309-60089328 | None:intergenic | 50.0% |
| !! | AGAGGCGTTCACAGATGAAC+TGG | - | chr7_3:60089310-60089329 | None:intergenic | 50.0% |
| ! | GTTGGTTCATGCTGTCTTGC+TGG | + | chr7_3:60089581-60089600 | Msa1113640:CDS | 50.0% |
| GGAGATTCGCGTGCTGTAAT+TGG | + | chr7_3:60089641-60089660 | Msa1113640:CDS | 50.0% | |
| CTCTTGTCAACTGCTCAGCA+TGG | - | chr7_3:60089688-60089707 | None:intergenic | 50.0% | |
| GAACTCCCAAAGTCCAACAG+AGG | - | chr7_3:60090054-60090073 | None:intergenic | 50.0% | |
| AATTATGTACGCGCCTCCTC+AGG | - | chr7_3:60090414-60090433 | None:intergenic | 50.0% | |
| CGTGTCTGATGAGCCTATGT+AGG | - | chr7_3:60090440-60090459 | None:intergenic | 50.0% | |
| CCAGACCGTGCAAAATCTGA+TGG | - | chr7_3:60090469-60090488 | None:intergenic | 50.0% | |
| ! | CCATCAGATTTTGCACGGTC+TGG | + | chr7_3:60090466-60090485 | Msa1113640:CDS | 50.0% |
| !! | TGAATCTAGCTCTCAGGCTC+AGG | + | chr7_3:60090549-60090568 | Msa1113640:CDS | 50.0% |
| !! | GAATCTAGCTCTCAGGCTCA+GGG | + | chr7_3:60090550-60090569 | Msa1113640:CDS | 50.0% |
| GGAATTTACGACGGCCATTG+TGG | + | chr7_3:60089272-60089291 | Msa1113640:CDS | 50.0% | |
| ! | GGGAAGCTTTAACGCCACAA+TGG | - | chr7_3:60089289-60089308 | None:intergenic | 50.0% |
| ! | GAGGCGTTCACAGATGAACT+GGG | - | chr7_3:60089309-60089328 | None:intergenic | 50.0% |
| !! | AGAGGCGTTCACAGATGAAC+TGG | - | chr7_3:60089310-60089329 | None:intergenic | 50.0% |
| ! | GTTGGTTCATGCTGTCTTGC+TGG | + | chr7_3:60089581-60089600 | Msa1113640:CDS | 50.0% |
| GGAGATTCGCGTGCTGTAAT+TGG | + | chr7_3:60089641-60089660 | Msa1113640:CDS | 50.0% | |
| CTCTTGTCAACTGCTCAGCA+TGG | - | chr7_3:60089688-60089707 | None:intergenic | 50.0% | |
| GAACTCCCAAAGTCCAACAG+AGG | - | chr7_3:60090054-60090073 | None:intergenic | 50.0% | |
| AATTATGTACGCGCCTCCTC+AGG | - | chr7_3:60090414-60090433 | None:intergenic | 50.0% | |
| CGTGTCTGATGAGCCTATGT+AGG | - | chr7_3:60090440-60090459 | None:intergenic | 50.0% | |
| CCAGACCGTGCAAAATCTGA+TGG | - | chr7_3:60090469-60090488 | None:intergenic | 50.0% | |
| ! | CCATCAGATTTTGCACGGTC+TGG | + | chr7_3:60090466-60090485 | Msa1113640:CDS | 50.0% |
| !! | TGAATCTAGCTCTCAGGCTC+AGG | + | chr7_3:60090549-60090568 | Msa1113640:CDS | 50.0% |
| !! | GAATCTAGCTCTCAGGCTCA+GGG | + | chr7_3:60090550-60090569 | Msa1113640:CDS | 50.0% |
| GAGGAGTCCGAGGACTTTGA+GGG | - | chr7_3:60090576-60090595 | None:intergenic | 55.0% | |
| AGAGGAGTCCGAGGACTTTG+AGG | - | chr7_3:60090577-60090596 | None:intergenic | 55.0% | |
| TCAAAGTCCTCGGACTCCTC+TGG | + | chr7_3:60090576-60090595 | Msa1113640:CDS | 55.0% | |
| GAGGAGTCCGAGGACTTTGA+GGG | - | chr7_3:60090576-60090595 | None:intergenic | 55.0% | |
| AGAGGAGTCCGAGGACTTTG+AGG | - | chr7_3:60090577-60090596 | None:intergenic | 55.0% | |
| TCAAAGTCCTCGGACTCCTC+TGG | + | chr7_3:60090576-60090595 | Msa1113640:CDS | 55.0% | |
| CTCAGGGCCCTCAAAGTCCT+CGG | + | chr7_3:60090566-60090585 | Msa1113640:CDS | 60.0% | |
| CTCAGGGCCCTCAAAGTCCT+CGG | + | chr7_3:60090566-60090585 | Msa1113640:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_3 | gene | 60089065 | 60090603 | 60089065 | ID=Msa1113640;Name=Msa1113640 |
| chr7_3 | mRNA | 60089065 | 60090603 | 60089065 | ID=Msa1113640-mRNA-1;Parent=Msa1113640;Name=Msa1113640-mRNA-1;_AED=0.33;_eAED=0.33;_QI=0|0|0|1|1|1|4|0|377 |
| chr7_3 | exon | 60089065 | 60089344 | 60089065 | ID=Msa1113640-mRNA-1:exon:13453;Parent=Msa1113640-mRNA-1 |
| chr7_3 | exon | 60089456 | 60089784 | 60089456 | ID=Msa1113640-mRNA-1:exon:13454;Parent=Msa1113640-mRNA-1 |
| chr7_3 | exon | 60089882 | 60090125 | 60089882 | ID=Msa1113640-mRNA-1:exon:13455;Parent=Msa1113640-mRNA-1 |
| chr7_3 | exon | 60090323 | 60090603 | 60090323 | ID=Msa1113640-mRNA-1:exon:13456;Parent=Msa1113640-mRNA-1 |
| chr7_3 | CDS | 60089065 | 60089344 | 60089065 | ID=Msa1113640-mRNA-1:cds;Parent=Msa1113640-mRNA-1 |
| chr7_3 | CDS | 60089456 | 60089784 | 60089456 | ID=Msa1113640-mRNA-1:cds;Parent=Msa1113640-mRNA-1 |
| chr7_3 | CDS | 60089882 | 60090125 | 60089882 | ID=Msa1113640-mRNA-1:cds;Parent=Msa1113640-mRNA-1 |
| chr7_3 | CDS | 60090323 | 60090603 | 60090323 | ID=Msa1113640-mRNA-1:cds;Parent=Msa1113640-mRNA-1 |
| Gene Sequence |
| Protein sequence |
