AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1160060

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1160060 MtrunA17_Chr3g0089691 76.613 248 38 3 10 237 53 300 9.67e-127 373
Msa1160060 MtrunA17_Chr3g0089691 67.832 143 31 1 273 400 156 298 5.06e-52 179
Msa1160060 MtrunA17_Chr3g0089691 72.727 66 18 0 485 550 6 71 1.30e-26 110
Msa1160060 MtrunA17_Chr3g0089711 77.064 218 33 2 10 210 139 356 2.97e-111 336
Msa1160060 MtrunA17_Chr3g0089711 75.862 145 35 0 406 550 13 157 2.89e-76 245
Msa1160060 MtrunA17_Chr3g0089711 67.826 115 22 1 273 372 242 356 3.19e-38 144
Msa1160060 MtrunA17_Chr3g0089721 76.852 216 33 2 10 208 139 354 2.81e-110 333
Msa1160060 MtrunA17_Chr3g0089721 76.552 145 34 0 406 550 13 157 1.06e-76 246
Msa1160060 MtrunA17_Chr3g0089721 67.257 113 22 1 273 370 242 354 2.50e-37 142
Msa1160060 MtrunA17_Chr7g0256751 59.322 295 87 5 10 277 140 428 7.54e-99 306
Msa1160060 MtrunA17_Chr7g0256751 78.082 146 31 1 406 550 13 158 2.67e-70 232
Msa1160060 MtrunA17_Chr7g0256751 65.359 153 35 2 272 406 242 394 4.88e-50 178
Msa1160060 MtrunA17_Chr7g0256761 64.835 182 48 2 32 213 28 193 8.63e-71 225
Msa1160060 MtrunA17_Chr7g0256761 69.697 132 25 1 259 375 62 193 8.00e-51 173
Msa1160060 MtrunA17_Chr7g0256771 70.748 147 41 1 406 550 13 159 3.47e-65 214
Msa1160060 MtrunA17_Chr7g0256771 58.599 157 48 2 10 149 141 297 1.30e-53 184
Msa1160060 MtrunA17_Chr7g0256771 76.364 55 13 0 272 326 243 297 2.40e-18 86.3
Msa1160060 MtrunA17_Chr1g0175381 47.619 210 87 4 10 201 149 353 4.23e-59 201
Msa1160060 MtrunA17_Chr1g0175381 48.993 149 74 2 402 550 21 167 4.92e-40 149
Msa1160060 MtrunA17_Chr1g0175381 46.512 129 57 2 273 389 252 380 1.71e-25 108
Msa1160060 MtrunA17_Chr1g0213351 45.024 211 92 4 10 201 150 355 5.82e-53 184
Msa1160060 MtrunA17_Chr1g0213351 37.879 132 74 2 426 550 38 168 5.22e-24 103
Msa1160060 MtrunA17_Chr1g0213351 48.113 106 44 1 269 363 250 355 4.26e-22 98.2
Msa1160060 MtrunA17_Chr7g0250061 45.972 211 90 4 10 201 146 351 8.82e-52 181
Msa1160060 MtrunA17_Chr7g0250061 46.512 129 61 2 429 550 37 164 2.71e-29 119
Msa1160060 MtrunA17_Chr7g0250061 53.000 100 36 1 281 369 258 357 5.24e-23 101
Msa1160060 MtrunA17_Chr1g0211251 46.919 211 88 4 10 201 151 356 5.17e-50 177
Msa1160060 MtrunA17_Chr1g0211251 44.961 129 63 2 429 550 42 169 4.69e-28 116
Msa1160060 MtrunA17_Chr1g0211251 48.148 108 45 1 273 369 255 362 1.07e-19 91.3
Msa1160060 MtrunA17_Chr1g0207571 50.292 171 80 2 32 202 174 339 5.67e-47 168
Msa1160060 MtrunA17_Chr1g0207571 42.424 132 74 2 419 550 20 149 3.23e-24 104
Msa1160060 MtrunA17_Chr1g0207571 50.000 102 40 1 274 364 238 339 2.64e-20 93.2
Msa1160060 MtrunA17_Chr2g0294291 46.409 181 92 2 32 212 187 362 9.02e-46 165
Msa1160060 MtrunA17_Chr2g0294291 40.800 125 73 1 426 550 41 164 6.74e-27 112
Msa1160060 MtrunA17_Chr2g0294291 47.788 113 48 1 273 374 250 362 1.13e-22 100
Msa1160060 MtrunA17_Chr8g0371321 40.758 211 101 4 10 201 149 354 1.98e-45 164
Msa1160060 MtrunA17_Chr8g0371321 44.961 129 63 2 429 550 40 167 8.80e-30 120
Msa1160060 MtrunA17_Chr8g0371321 46.000 100 43 1 281 369 261 360 1.48e-18 87.8
Msa1160060 MtrunA17_Chr7g0263281 42.180 211 98 4 10 201 141 346 5.13e-42 154
Msa1160060 MtrunA17_Chr7g0263281 40.288 139 75 2 419 550 22 159 3.12e-27 113
Msa1160060 MtrunA17_Chr7g0263281 49.057 106 43 1 273 367 245 350 1.30e-18 87.8
Msa1160060 MtrunA17_Chr1g0181901 39.698 199 86 4 32 201 187 380 1.31e-33 132
Msa1160060 MtrunA17_Chr1g0181901 42.446 139 72 3 419 550 27 164 1.47e-28 117
Msa1160060 MtrunA17_Chr4g0063111 35.981 214 111 4 10 204 144 350 3.52e-32 130
Msa1160060 MtrunA17_Chr4g0063111 44.628 121 61 3 430 550 48 162 1.48e-21 98.2
Msa1160060 MtrunA17_Chr4g0063111 32.886 149 71 3 281 415 251 384 1.34e-13 73.6
Msa1160060 MtrunA17_Chr4g0063051 32.759 232 106 6 2 214 122 322 1.76e-27 113
Msa1160060 MtrunA17_Chr4g0063051 41.322 121 58 1 283 390 216 336 2.02e-22 98.6
Msa1160060 MtrunA17_Chr4g0063051 32.857 140 89 3 412 550 13 148 3.79e-15 77.0
Msa1160060 MtrunA17_Chr4g0062951 47.619 105 50 4 30 130 80 183 1.68e-20 89.4
Msa1160060 MtrunA17_Chr2g0295991 33.140 172 101 4 33 200 315 476 1.83e-19 91.7
Msa1160060 MtrunA17_Chr7g0258711 43.434 99 42 3 30 126 2 88 2.24e-18 80.5
Msa1160060 MtrunA17_Chr4g0031521 33.523 176 99 7 32 201 533 696 1.68e-16 82.8
Msa1160060 MtrunA17_Chr1g0193691 30.978 184 109 5 26 201 711 884 5.62e-16 81.6
Msa1160060 MtrunA17_Chr4g0067301 29.651 172 107 4 33 200 326 487 7.62e-16 80.5
Msa1160060 MtrunA17_Chr7g0238501 30.000 180 104 6 30 201 382 547 6.41e-15 77.8
Msa1160060 MtrunA17_Chr4g0054811 31.694 183 93 7 32 201 605 768 1.66e-14 76.6
Msa1160060 MtrunA17_Chr4g0039061 30.108 186 109 8 20 198 309 480 2.10e-13 72.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1160060 AT5G06750.2 46.729 214 87 4 10 201 70 278 1.19e-58 197
Msa1160060 AT5G06750.2 48.062 129 54 2 275 390 179 307 3.54e-26 109
Msa1160060 AT5G06750.2 47.436 78 40 1 474 550 11 88 1.47e-12 69.3
Msa1160060 AT5G06750.3 46.729 214 87 4 10 201 152 360 1.29e-57 197
Msa1160060 AT5G06750.3 50.769 130 62 2 421 550 43 170 1.59e-34 135
Msa1160060 AT5G06750.3 47.328 131 56 2 273 390 259 389 1.80e-25 108
Msa1160060 AT5G06750.1 46.729 214 87 4 10 201 152 360 1.29e-57 197
Msa1160060 AT5G06750.1 50.769 130 62 2 421 550 43 170 1.59e-34 135
Msa1160060 AT5G06750.1 47.328 131 56 2 273 390 259 389 1.80e-25 108
Msa1160060 AT3G55050.1 45.116 215 94 4 10 205 154 363 4.40e-53 185
Msa1160060 AT3G55050.1 39.844 128 69 2 430 550 46 172 4.99e-22 98.6
Msa1160060 AT3G55050.1 44.954 109 49 1 273 370 258 366 4.02e-20 92.8
Msa1160060 AT3G55050.2 45.116 215 94 4 10 205 154 363 4.40e-53 185
Msa1160060 AT3G55050.2 39.844 128 69 2 430 550 46 172 4.99e-22 98.6
Msa1160060 AT3G55050.2 44.954 109 49 1 273 370 258 366 4.02e-20 92.8
Msa1160060 AT3G51370.2 42.180 211 98 4 10 201 64 269 6.07e-51 177
Msa1160060 AT3G51370.2 46.364 110 48 1 265 363 160 269 5.78e-22 96.7
Msa1160060 AT3G51370.1 42.180 211 98 4 10 201 149 354 1.03e-49 176
Msa1160060 AT3G51370.1 40.714 140 75 2 418 550 29 167 7.43e-28 115
Msa1160060 AT3G51370.1 46.364 110 48 1 265 363 245 354 1.85e-21 97.1
Msa1160060 AT3G51370.3 42.180 211 98 4 10 201 149 354 1.03e-49 176
Msa1160060 AT3G51370.3 40.714 140 75 2 418 550 29 167 7.43e-28 115
Msa1160060 AT3G51370.3 46.364 110 48 1 265 363 245 354 1.85e-21 97.1
Msa1160060 AT3G12620.2 45.972 211 90 5 10 201 153 358 1.25e-49 176
Msa1160060 AT3G12620.2 40.152 132 63 3 430 550 45 171 1.28e-22 100
Msa1160060 AT3G12620.2 46.094 128 56 2 273 387 257 384 5.43e-22 98.6
Msa1160060 AT3G12620.1 45.972 211 90 5 10 201 153 358 1.25e-49 176
Msa1160060 AT3G12620.1 40.152 132 63 3 430 550 45 171 1.28e-22 100
Msa1160060 AT3G12620.1 46.094 128 56 2 273 387 257 384 5.43e-22 98.6
Msa1160060 AT5G66080.2 39.506 243 117 6 10 233 48 279 1.66e-49 172
Msa1160060 AT5G66080.2 48.276 116 49 1 265 369 144 259 1.10e-23 101
Msa1160060 AT4G38520.2 44.550 211 93 4 10 201 151 356 4.71e-49 175
Msa1160060 AT4G38520.2 41.085 129 68 2 429 550 42 169 1.09e-25 109
Msa1160060 AT4G38520.2 48.544 103 42 1 278 369 260 362 6.44e-21 95.5
Msa1160060 AT4G38520.1 44.550 211 93 4 10 201 151 356 4.71e-49 175
Msa1160060 AT4G38520.1 41.085 129 68 2 429 550 42 169 1.09e-25 109
Msa1160060 AT4G38520.1 48.544 103 42 1 278 369 260 362 6.44e-21 95.5
Msa1160060 AT5G66080.1 39.506 243 117 5 10 233 152 383 3.95e-48 172
Msa1160060 AT5G66080.1 43.411 129 64 2 430 550 43 170 1.37e-27 115
Msa1160060 AT5G66080.1 48.276 116 49 1 265 369 248 363 5.39e-23 101
Msa1160060 AT5G02760.1 46.411 209 90 4 10 201 142 345 1.29e-46 167
Msa1160060 AT5G02760.1 35.971 139 81 2 419 550 23 160 5.20e-24 104
Msa1160060 AT5G02760.1 47.059 102 43 1 273 363 244 345 3.88e-15 77.8
Msa1160060 AT3G17090.1 41.026 234 109 5 10 222 155 380 5.47e-46 166
Msa1160060 AT3G17090.1 41.600 125 72 1 426 550 50 173 8.33e-29 118
Msa1160060 AT3G17090.1 45.946 111 49 1 273 372 258 368 2.14e-20 94.0
Msa1160060 AT4G33920.3 47.953 171 84 2 32 202 62 227 3.95e-45 160
Msa1160060 AT4G33920.3 52.577 97 35 1 279 364 131 227 4.01e-22 96.7
Msa1160060 AT4G33920.2 47.953 171 84 2 32 202 92 257 1.02e-44 160
Msa1160060 AT4G33920.2 52.577 97 35 1 279 364 161 257 8.09e-22 96.7
Msa1160060 AT4G33920.1 47.953 171 84 2 32 202 175 340 6.93e-44 160
Msa1160060 AT4G33920.1 41.667 132 75 2 419 550 20 149 1.04e-23 103
Msa1160060 AT4G33920.1 52.577 97 35 1 279 364 244 340 2.58e-21 96.7
Msa1160060 AT3G17090.2 42.945 163 73 4 10 154 155 315 4.00e-33 129
Msa1160060 AT3G17090.2 41.600 125 72 1 426 550 50 173 3.70e-29 118
Msa1160060 AT3G16560.1 32.979 188 111 5 17 200 304 480 1.88e-20 95.1
Msa1160060 AT3G16560.4 32.979 188 111 5 17 200 304 480 1.88e-20 95.1
Msa1160060 AT3G16560.2 32.979 188 111 5 17 200 304 480 1.88e-20 95.1
Msa1160060 AT3G16560.3 35.065 154 89 4 17 166 304 450 2.43e-16 82.0
Msa1160060 AT3G09400.1 31.034 174 106 5 32 201 479 642 3.38e-16 82.4
Msa1160060 AT5G02400.1 30.857 175 107 4 31 201 502 666 1.53e-15 80.5
Msa1160060 AT2G35350.1 30.233 172 105 5 32 200 611 770 8.68e-15 78.2
Msa1160060 AT1G07630.1 29.282 181 104 6 30 201 489 654 8.91e-15 77.8
Msa1160060 AT2G28890.1 28.977 176 111 5 30 201 481 646 1.73e-14 77.0
Msa1160060 AT2G46920.3 29.348 184 112 5 26 201 663 836 3.49e-14 76.3
Msa1160060 AT2G46920.1 29.348 184 112 5 26 201 663 836 3.49e-14 76.3
Msa1160060 AT2G46920.2 29.348 184 112 5 26 201 663 836 3.49e-14 76.3
Msa1160060 AT2G46920.4 29.348 184 112 5 26 201 663 836 3.49e-14 76.3
Msa1160060 AT3G09400.2 30.935 139 86 4 32 166 479 611 4.64e-11 65.9

Find 106 sgRNAs with CRISPR-Local

Find 452 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTAGAAATGCACTCTTTCT+TGG 0.235857 7_4:+49847864 Msa1160060:CDS
GGATATATACATACATTTCT+TGG 0.266088 7_4:-49844234 None:intergenic
ATTTGCCTCTGTTGGACTTT+GGG 0.266890 7_4:+49844167 Msa1160060:CDS
AGATATATACATACATTTCT+AGG 0.273068 7_4:-49841901 None:intergenic
AAGTGTGATTGTTGTGTTCT+TGG 0.279013 7_4:+49842227 Msa1160060:CDS
AATGGATCATGGCGTGTTAA+AGG 0.285206 7_4:+49841549 Msa1160060:CDS
ATTTGCTTCTGATGGACTTT+GGG 0.288700 7_4:+49841834 Msa1160060:CDS
ACACTACATGTTGCAATTCT+TGG 0.290943 7_4:+49841377 Msa1160060:CDS
AAAGAAGGAAGGTTGCTTAT+AGG 0.302312 7_4:+49842142 Msa1160060:CDS
GAACCAACATTTCCAAGATT+TGG 0.306153 7_4:-49848181 None:intergenic
TTATCATTTATCACAATGTT+AGG 0.308249 7_4:-49841528 None:intergenic
TTTGCTTTATGCTGTCTTGC+TGG 0.308521 7_4:+49841339 Msa1160060:CDS
GATAGCACACCTCTTGTAAA+AGG 0.346223 7_4:-49841757 None:intergenic
AACATTGTGATAAATGATAA+TGG 0.351980 7_4:+49841531 Msa1160060:CDS
GCGTGTTAAAGGCTTCATTA+TGG 0.353108 7_4:+49841560 Msa1160060:CDS
TCGATCTTGCATAGCTGTAT+TGG 0.359321 7_4:-49847823 None:intergenic
TTTCTTATATTTGCCTCTGT+TGG 0.359649 7_4:+49844159 Msa1160060:CDS
CTCTCGCCCTCAAGGGTTTG+AGG 0.360696 7_4:-49842467 None:intergenic
TATATTAAAGAACCAAATCT+TGG 0.363309 7_4:+49848169 Msa1160060:CDS
ACGCTACATGTTGCGAATCT+TGG 0.382597 7_4:+49848235 Msa1160060:CDS
GATTAGGTTAGTAGAGCTAT+TGG 0.387987 7_4:+49841664 Msa1160060:intron
TATTTGCCTCTGTTGGACTT+TGG 0.388581 7_4:+49844166 Msa1160060:CDS
TATTTGCTTCTGATGGACTT+TGG 0.396432 7_4:+49841833 Msa1160060:CDS
GCTGTCTTGATGGGATTATA+TGG 0.405254 7_4:+49848206 Msa1160060:CDS
TGCCTCAATGACTGCAGCCT+TGG 0.415429 7_4:-49842351 None:intergenic
ATCACAATGTTAGGATCATC+AGG 0.415610 7_4:-49841519 None:intergenic
GCTGTCTTGCTGGAACTATA+TGG 0.418884 7_4:+49841349 Msa1160060:CDS
CGTGCAAAATCTGATTGTAT+AGG 0.419261 7_4:-49842312 None:intergenic
GAACCAAATCTTGGAAATGT+TGG 0.423276 7_4:+49848178 Msa1160060:CDS
CCTGCTCACATTTCTTCTGT+TGG 0.423497 7_4:-49844456 None:intergenic
TTTATTATATTTGCTTCTGA+TGG 0.427473 7_4:+49841826 Msa1160060:CDS
TCGGGGCCCTCGGACTCCTC+TGG 0.431883 7_4:+49842436 Msa1160060:CDS
GTTGGTTCATGCTGTCTTGA+TGG 0.432196 7_4:+49848196 Msa1160060:CDS
ATCACATGCATCTAGCTCTC+GGG 0.436488 7_4:+49842418 Msa1160060:CDS
GAAGATTGAGGCCTCTGCTC+CGG 0.447762 7_4:+49842164 Msa1160060:CDS
TCTCGCCCTCAAGGGTTTGA+GGG 0.450579 7_4:-49842466 None:intergenic
CATCTAGCTCTCGGGGCCCT+CGG 0.455901 7_4:+49842426 Msa1160060:CDS
AAAACTCTAGTATGCATCTC+TGG 0.458872 7_4:-49841787 None:intergenic
CAAGTTCGATTAATCTCAAA+AGG 0.460271 7_4:+49847763 Msa1160060:CDS
CTTGGAGTTTACGACGGCCA+TGG 0.468637 7_4:+49847882 Msa1160060:CDS
AAGATTGAGGCCTCTGCTCC+GGG 0.473167 7_4:+49842165 Msa1160060:CDS
GGAGTTCTTGTCAAATGAGC+AGG 0.474040 7_4:+49844188 Msa1160060:CDS
TTTGAGAGCTCTCGCCCTCA+AGG 0.475589 7_4:-49842475 None:intergenic
TTGGTTCATGCTGTCTTGAT+GGG 0.478302 7_4:+49848197 Msa1160060:CDS
GGTCTGGATTAATTGCTTCA+AGG 0.479306 7_4:+49844606 Msa1160060:CDS
CTGAACCCTCAAACCCTTGA+GGG 0.480771 7_4:+49842461 Msa1160060:CDS
CATCACATGCATCTAGCTCT+CGG 0.481374 7_4:+49842417 Msa1160060:CDS
TAGCAGAAACAGCATCCCTC+AGG 0.485456 7_4:-49848111 None:intergenic
TTCTAGAAGCAACTTCAACT+TGG 0.488095 7_4:-49847848 None:intergenic
AAAACTCTAGTAAACATCTC+TGG 0.489351 7_4:-49844120 None:intergenic
ACACCTCTTGTAAAAGGTTC+AGG 0.493387 7_4:-49841751 None:intergenic
ACACCTCTAGTAGAAGATTC+AGG 0.498845 7_4:-49844084 None:intergenic
GGCTGCAGTCATTGAGGCAT+CGG 0.504381 7_4:+49842355 Msa1160060:CDS
GAGCTCTCAAACTGAGGGCG+AGG 0.506297 7_4:+49842487 Msa1160060:CDS
GGGCGAGAGCTCTCAAACTG+AGG 0.507934 7_4:+49842481 Msa1160060:CDS
GCTGTTTCTGCTACTGAAGA+CGG 0.521666 7_4:+49848121 Msa1160060:CDS
TTCAGAGCCAGAGGAGTCCG+AGG 0.521999 7_4:-49842443 None:intergenic
AATTATGTACGCGCCTCCTC+AGG 0.526034 7_4:-49844535 None:intergenic
CAATGACTGCAGCCTTGGAA+TGG 0.536930 7_4:-49842346 None:intergenic
TTGATGGGATTATATGGAAA+GGG 0.539069 7_4:+49848212 Msa1160060:CDS
CGGCTCACATTGTTGCATCC+CGG 0.539797 7_4:-49842183 None:intergenic
TTGAGAGCTCTCGCCCTCAA+GGG 0.544954 7_4:-49842474 None:intergenic
TAGCGGTAGCTGCTAAAAGA+AGG 0.549619 7_4:+49842127 Msa1160060:CDS
CGGGATGCAACAATGTGAGC+CGG 0.550832 7_4:+49842184 Msa1160060:CDS
TATCATCATGAAAAGACCTC+CGG 0.551273 7_4:-49842203 None:intergenic
GGCGAGAGCTCTCAAACTGA+GGG 0.552809 7_4:+49842482 Msa1160060:CDS
ATTAATTGCTTCAAGGCTGA+AGG 0.553154 7_4:+49844613 Msa1160060:CDS
CTCTTTCTTGGAGTTTACGA+CGG 0.553363 7_4:+49847876 Msa1160060:CDS
CGTGTCTGATGAGCCTATGT+AGG 0.565945 7_4:-49844561 None:intergenic
CGTGCAAAATCTGATGGTAG+AGG 0.568452 7_4:-49844584 None:intergenic
GTTTGAGGGTTCAGAGCCAG+AGG 0.568851 7_4:-49842452 None:intergenic
AATCTCAAAAGGCATTGCTA+TGG 0.570648 7_4:+49847774 Msa1160060:CDS
CTTGATGGGATTATATGGAA+AGG 0.572408 7_4:+49848211 Msa1160060:CDS
GGTTGCTTATAGGAAGATTG+AGG 0.573308 7_4:+49842152 Msa1160060:CDS
TTTAGCAGCTACCGCTAGAA+CGG 0.578660 7_4:-49842121 None:intergenic
TTCCAAGGCTGCAGTCATTG+AGG 0.582218 7_4:+49842349 Msa1160060:CDS
CCAACAGAAGAAATGTGAGC+AGG 0.583565 7_4:+49844456 Msa1160060:CDS
GAGGTGTTCACAGATGAACT+TGG 0.595172 7_4:-49847919 None:intergenic
GTACATAATTTGTCCTACAT+AGG 0.595190 7_4:+49844548 Msa1160060:CDS
TGATAAATGATAATGGATCA+TGG 0.598746 7_4:+49841538 Msa1160060:CDS
TCTTGCTGGAACTATATGGA+AGG 0.598802 7_4:+49841353 Msa1160060:CDS
GTTCCTGAATCTTCTACTAG+AGG 0.599349 7_4:+49844081 Msa1160060:intron
TTGGCGATGCATATTTGAAG+AGG 0.599709 7_4:+49841683 Msa1160060:CDS
CCAGACCGTGCAAAATCTGA+TGG 0.601444 7_4:-49844590 None:intergenic
AGCAGAAACAGCATCCCTCA+GGG 0.603456 7_4:-49848110 None:intergenic
TCTGAACCCTCAAACCCTTG+AGG 0.604374 7_4:+49842460 Msa1160060:CDS
TGGACAAAACGTCGTTTCTG+AGG 0.604545 7_4:+49842247 Msa1160060:CDS
AGCTCTCAAACTGAGGGCGA+GGG 0.611282 7_4:+49842488 Msa1160060:CDS
ATTGTTGCATCCCGGAGCAG+AGG 0.614180 7_4:-49842175 None:intergenic
TCAGAGCCAGAGGAGTCCGA+GGG 0.618025 7_4:-49842442 None:intergenic
GGAGTTTACGACGGCCATGG+TGG 0.621113 7_4:+49847885 Msa1160060:CDS
TCACATGCATCTAGCTCTCG+GGG 0.622392 7_4:+49842419 Msa1160060:CDS
AGATTAATCGAACTTGCGAG+AGG 0.624396 7_4:-49847756 None:intergenic
TATAACTGAAGCTGCCCTGA+GGG 0.625505 7_4:+49848096 Msa1160060:CDS
GATCTGGATTAACCATTCCA+AGG 0.632583 7_4:+49842334 Msa1160060:CDS
GATGCAACAATGTGAGCCGG+AGG 0.637629 7_4:+49842187 Msa1160060:CDS
ATTGGCTTGAACAACAACAC+TGG 0.640176 7_4:-49847805 None:intergenic
GATTAATCGAACTTGCGAGA+GGG 0.642744 7_4:-49847755 None:intergenic
ACAGAAGAAATGTGAGCAGG+AGG 0.642910 7_4:+49844459 Msa1160060:CDS
CTTGCTGGAACTATATGGAA+GGG 0.645459 7_4:+49841354 Msa1160060:CDS
GCTTCTGAGTACCGTTCTAG+CGG 0.646440 7_4:+49842110 Msa1160060:CDS
GGTAGCTGCTAAAAGAAGGA+AGG 0.656712 7_4:+49842131 Msa1160060:CDS
TGAAGGATCGTATCAAGAAG+CGG 0.663488 7_4:+49844630 Msa1160060:CDS
ATATAACTGAAGCTGCCCTG+AGG 0.706544 7_4:+49848095 Msa1160060:CDS
GAACTCCCAAAGTCCAACAG+AGG 0.710237 7_4:-49844172 None:intergenic
TGGAAGTATCGAAGCCACCA+TGG 0.713582 7_4:-49847899 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTACATTACTAAAATTT+TGG + chr7_4:49842800-49842819 Msa1160060:intron 10.0%
!!! AAAATCTTTTTTTTTTTCAA+AGG - chr7_4:49843030-49843049 None:intergenic 10.0%
!!! AAAAAAAAGATTTTTAGTAT+TGG + chr7_4:49843036-49843055 Msa1160060:intron 10.0%
!!! ATATTTTATTTGACAAATTT+TGG - chr7_4:49843616-49843635 None:intergenic 10.0%
!!! AAACAAAAAAACTAAAATTT+TGG + chr7_4:49844916-49844935 Msa1160060:intron 10.0%
!! TAGAATTTAGATATAAAAAT+TGG + chr7_4:49845053-49845072 Msa1160060:intron 10.0%
!! AATGATTATTTATAAATGAA+AGG + chr7_4:49845428-49845447 Msa1160060:intron 10.0%
!!! CTTTTAATTTAATTATTCTG+TGG + chr7_4:49842061-49842080 Msa1160060:intron 15.0%
!! ATCATATCATATAAGAAAAA+AGG + chr7_4:49843474-49843493 Msa1160060:intron 15.0%
!! TCATATCATATAAGAAAAAA+GGG + chr7_4:49843475-49843494 Msa1160060:intron 15.0%
!!! TTTTTTCAGAAACATATTTT+TGG + chr7_4:49843919-49843938 Msa1160060:intron 15.0%
!!! TTTTTCAGAAACATATTTTT+GGG + chr7_4:49843920-49843939 Msa1160060:intron 15.0%
!!! GTTACTTTTACTATAAATAT+AGG + chr7_4:49843968-49843987 Msa1160060:intron 15.0%
!! ATAGCTTATTATACTTAATT+AGG - chr7_4:49845729-49845748 None:intergenic 15.0%
!!! TGAATATAAAAAAAGGTTTT+GGG - chr7_4:49845814-49845833 None:intergenic 15.0%
!! AGAAAAGTGAATATAAAAAA+AGG - chr7_4:49845821-49845840 None:intergenic 15.0%
!!! ATTTATATATCTGAAATGAA+GGG - chr7_4:49846246-49846265 None:intergenic 15.0%
!!! TATTTATATATCTGAAATGA+AGG - chr7_4:49846247-49846266 None:intergenic 15.0%
!! TATTCAAAAAAAATATATCC+TGG - chr7_4:49846442-49846461 None:intergenic 15.0%
!! TATTCAAAAAAAATATATCC+TGG - chr7_4:49846442-49846461 None:intergenic 15.0%
!!! ATTTATATATCTGAAATGAA+GGG - chr7_4:49846246-49846265 None:intergenic 15.0%
!!! TATTTATATATCTGAAATGA+AGG - chr7_4:49846247-49846266 None:intergenic 15.0%
!! TATTCAAAAAAAATATATCC+TGG - chr7_4:49846442-49846461 None:intergenic 15.0%
!! TTGAAAATATAGTTAATCTA+TGG + chr7_4:49841304-49841323 Msa1160060:intron 15.0%
!! AAAATATAGTTAATCTATGC+AGG + chr7_4:49841307-49841326 Msa1160060:intron 20.0%
!! TTATCATTTATCACAATGTT+AGG - chr7_4:49841531-49841550 None:intergenic 20.0%
!! AACATTGTGATAAATGATAA+TGG + chr7_4:49841531-49841550 Msa1160060:CDS 20.0%
!!! GTTATTGTTTGATTTGATAT+TGG + chr7_4:49841619-49841638 Msa1160060:intron 20.0%
!!! TGTTTTCTTGTATATTGATT+AGG + chr7_4:49841648-49841667 Msa1160060:intron 20.0%
!! TTTATTATATTTGCTTCTGA+TGG + chr7_4:49841826-49841845 Msa1160060:CDS 20.0%
!! AGATATATACATACATTTCT+AGG - chr7_4:49841904-49841923 None:intergenic 20.0%
!!! GACTTATTTTCATTTTCTAA+AGG - chr7_4:49841989-49842008 None:intergenic 20.0%
!! TTAATTTAATTATTCTGTGG+TGG + chr7_4:49842064-49842083 Msa1160060:intron 20.0%
!!! ACTTTTATTTAAGGTCTATT+AGG - chr7_4:49842559-49842578 None:intergenic 20.0%
!!! ACATTCTCAACTTTTATTTA+AGG - chr7_4:49842568-49842587 None:intergenic 20.0%
!! AAAACTACACATCTATTATA+CGG + chr7_4:49842863-49842882 Msa1160060:intron 20.0%
!!! CTAATTTCTTTTCTATTACT+TGG - chr7_4:49843118-49843137 None:intergenic 20.0%
!! CAAGTAATAGAAAAGAAATT+AGG + chr7_4:49843116-49843135 Msa1160060:intron 20.0%
!! AAAATAGCACAAAAGAAAAT+AGG + chr7_4:49843513-49843532 Msa1160060:intron 20.0%
!! AAATAGCACAAAAGAAAATA+GGG + chr7_4:49843514-49843533 Msa1160060:intron 20.0%
!! ATCATTGCAATATTATGAAT+TGG - chr7_4:49843696-49843715 None:intergenic 20.0%
!!! TCAGATTTGTTACAATTTTA+TGG + chr7_4:49843943-49843962 Msa1160060:intron 20.0%
!!! CAGATTTGTTACAATTTTAT+GGG + chr7_4:49843944-49843963 Msa1160060:intron 20.0%
!!! TCAGGAACTTTTTTAAAATT+TGG - chr7_4:49844069-49844088 None:intergenic 20.0%
!!! GAACTTTTATTTCAAAAACA+AGG - chr7_4:49844776-49844795 None:intergenic 20.0%
!!! TGACTTAGTTTTAAATTTGA+GGG - chr7_4:49845004-49845023 None:intergenic 20.0%
!!! TTGACTTAGTTTTAAATTTG+AGG - chr7_4:49845005-49845024 None:intergenic 20.0%
!!! TTTAAACTTTTCAATTTGCA+AGG - chr7_4:49845029-49845048 None:intergenic 20.0%
!! AAAACTACACATCTATTATA+TGG + chr7_4:49842863-49842882 Msa1160060:intron 20.0%
!!! TTACTTTTCCTTAATACTAA+AGG + chr7_4:49845553-49845572 Msa1160060:intron 20.0%
!!! GTGAATATAAAAAAAGGTTT+TGG - chr7_4:49845815-49845834 None:intergenic 20.0%
!! AAAAGAGAAAAGAAAATCTA+TGG - chr7_4:49845934-49845953 None:intergenic 20.0%
!! ATAAATACATAGAAATTCAG+TGG + chr7_4:49846260-49846279 Msa1160060:intron 20.0%
!! ATAAATACATAGAAATTCAG+TGG + chr7_4:49846260-49846279 Msa1160060:intron 20.0%
!! TATGTATTTATAGAGAAGTT+GGG + chr7_4:49847310-49847329 Msa1160060:intron 20.0%
!! TGAATGAATGAATATTCTAT+GGG - chr7_4:49847374-49847393 None:intergenic 20.0%
!! TTGAATGAATGAATATTCTA+TGG - chr7_4:49847375-49847394 None:intergenic 20.0%
!! TATGTATTTATAGAGAAGTT+GGG + chr7_4:49847310-49847329 Msa1160060:intron 20.0%
!! TGAATGAATGAATATTCTAT+GGG - chr7_4:49847374-49847393 None:intergenic 20.0%
!! TTGAATGAATGAATATTCTA+TGG - chr7_4:49847375-49847394 None:intergenic 20.0%
!! AAAATATAGTTAATCTATGG+AGG + chr7_4:49847694-49847713 Msa1160060:intron 20.0%
!!! AATTTTTGATCTTTGTTTCT+TGG + chr7_4:49848000-49848019 Msa1160060:intron 20.0%
!!! TATGTTATTGGTTACATTAT+AGG + chr7_4:49848049-49848068 Msa1160060:intron 20.0%
!!! ATGTTATTGGTTACATTATA+GGG + chr7_4:49848050-49848069 Msa1160060:intron 20.0%
!! TATATTAAAGAACCAAATCT+TGG + chr7_4:49848169-49848188 Msa1160060:CDS 20.0%
! GAAGTTAGTTAAATTCTGTT+AGG + chr7_4:49841083-49841102 Msa1160060:intron 25.0%
!!! TGATAAATGATAATGGATCA+TGG + chr7_4:49841538-49841557 Msa1160060:CDS 25.0%
!!! TCAGGAACTTTTTCAAATTT+GGG - chr7_4:49841736-49841755 None:intergenic 25.0%
!!! TTCAGGAACTTTTTCAAATT+TGG - chr7_4:49841737-49841756 None:intergenic 25.0%
! ATAAAGCTAACAAATCTCAA+TGG - chr7_4:49842613-49842632 None:intergenic 25.0%
!!! TTGAGATTTGTTAGCTTTAT+TGG + chr7_4:49842613-49842632 Msa1160060:intron 25.0%
! CCTATTAAAATTTCATGATC+CGG - chr7_4:49842720-49842739 None:intergenic 25.0%
!!! AAGATTTTTAGTATTGGAGT+TGG + chr7_4:49843042-49843061 Msa1160060:intron 25.0%
!! AGGAGATACTATTTTCAAAA+AGG + chr7_4:49843136-49843155 Msa1160060:intron 25.0%
!! AATTTTCCACTTACAAGATT+CGG + chr7_4:49843181-49843200 Msa1160060:intron 25.0%
! ATATGAATTAAACTTACGAG+AGG - chr7_4:49843212-49843231 None:intergenic 25.0%
! TCTCGTAAGTTTAATTCATA+TGG + chr7_4:49843211-49843230 Msa1160060:intron 25.0%
! CTCGTAAGTTTAATTCATAT+GGG + chr7_4:49843212-49843231 Msa1160060:intron 25.0%
! TTAGTTACAAATATAGAGAG+AGG + chr7_4:49843257-49843276 Msa1160060:intron 25.0%
! TAGTTACAAATATAGAGAGA+GGG + chr7_4:49843258-49843277 Msa1160060:intron 25.0%
! AAGAAAAAAGGGTAAAAATG+AGG + chr7_4:49843486-49843505 Msa1160060:intron 25.0%
! AGAAAAAAGGGTAAAAATGA+GGG + chr7_4:49843487-49843506 Msa1160060:intron 25.0%
! AATAGCACAAAAGAAAATAG+GGG + chr7_4:49843515-49843534 Msa1160060:intron 25.0%
! TAACTTCATAATTGCACTTA+TGG - chr7_4:49843574-49843593 None:intergenic 25.0%
! AAAAAACTGTTACGCAAAAT+CGG - chr7_4:49843904-49843923 None:intergenic 25.0%
!! ATAAATATAGGCATTGTATC+AGG + chr7_4:49843980-49843999 Msa1160060:intron 25.0%
! GGATATATACATACATTTCT+TGG - chr7_4:49844237-49844256 None:intergenic 25.0%
! AAAAGAACAAGTCATAGATA+TGG - chr7_4:49841919-49841938 None:intergenic 25.0%
!!! GTGTTTTTTCACAATACAAA+AGG - chr7_4:49844291-49844310 None:intergenic 25.0%
! TGTATTGTGAAAAAACACAA+AGG + chr7_4:49844293-49844312 Msa1160060:intron 25.0%
! TTGATTTAGTTATGCTATGA+TGG + chr7_4:49844381-49844400 Msa1160060:intron 25.0%
! GACATGAGATATAATTTCAA+AGG - chr7_4:49844872-49844891 None:intergenic 25.0%
!!! AAATTTTGGAGTAATCCTAA+TGG + chr7_4:49844930-49844949 Msa1160060:intron 25.0%
!!! AATTTTGGAGTAATCCTAAT+GGG + chr7_4:49844931-49844950 Msa1160060:intron 25.0%
!!! ACTTAGTTTTAAATTTGAGG+GGG - chr7_4:49845002-49845021 None:intergenic 25.0%
!!! GACTTAGTTTTAAATTTGAG+GGG - chr7_4:49845003-49845022 None:intergenic 25.0%
! ATAAAAATTGGACTCAGAAA+TGG + chr7_4:49845065-49845084 Msa1160060:intron 25.0%
! TAAAAATTGGACTCAGAAAT+GGG + chr7_4:49845066-49845085 Msa1160060:intron 25.0%
!!! AAAGTGTTAATTTGTATGCA+AGG + chr7_4:49845292-49845311 Msa1160060:intron 25.0%
! GAATATGTAAAAATTGCAGA+AGG - chr7_4:49845525-49845544 None:intergenic 25.0%
! AAGATCAACCTTTAGTATTA+AGG - chr7_4:49845564-49845583 None:intergenic 25.0%
! ATATTATTCACAATTCACGT+TGG + chr7_4:49845598-49845617 Msa1160060:intron 25.0%
! TAATATTGCAAACAAGTAGA+AGG + chr7_4:49845751-49845770 Msa1160060:intron 25.0%
! GATAAAAGAGAATATTGTTG+AGG - chr7_4:49846058-49846077 None:intergenic 25.0%
! GAAGTTAGTTATATTCAGTT+AGG + chr7_4:49846168-49846187 Msa1160060:intron 25.0%
! TCAAAAAAAATATATCCTGG+CGG - chr7_4:49846439-49846458 None:intergenic 25.0%
! GAAGTTAGTTATATTCAGTT+AGG + chr7_4:49846168-49846187 Msa1160060:intron 25.0%
! TCAAAAAAAATATATCCTGG+CGG - chr7_4:49846439-49846458 None:intergenic 25.0%
! GAAGTTAGTTATATTCAGTT+AGG + chr7_4:49846168-49846187 Msa1160060:intron 25.0%
! TCAAAAAAAATATATCCTGG+CGG - chr7_4:49846439-49846458 None:intergenic 25.0%
! ATAATATTTCACATGCTTCA+TGG - chr7_4:49847284-49847303 None:intergenic 25.0%
! GTATGTATTTATAGAGAAGT+TGG + chr7_4:49847309-49847328 Msa1160060:intron 25.0%
! ATGTATTTATAGAGAAGTTG+GGG + chr7_4:49847311-49847330 Msa1160060:intron 25.0%
! ATAATATTTCACATGCTTCA+TGG - chr7_4:49847284-49847303 None:intergenic 25.0%
! GTATGTATTTATAGAGAAGT+TGG + chr7_4:49847309-49847328 Msa1160060:intron 25.0%
! ATGTATTTATAGAGAAGTTG+GGG + chr7_4:49847311-49847330 Msa1160060:intron 25.0%
!!! TTAACTATATTTTCAAGCCA+AGG - chr7_4:49841300-49841319 None:intergenic 25.0%
!! GTATGCATTTTTGAAGGAAA+AGG - chr7_4:49841279-49841298 None:intergenic 30.0%
TTCCTTCAAAAATGCATACT+TGG + chr7_4:49841280-49841299 Msa1160060:intron 30.0%
!!! CAGGAACTTTTTCAAATTTG+GGG - chr7_4:49841735-49841754 None:intergenic 30.0%
GTCTTTACAGTTATATTTGC+AGG + chr7_4:49842038-49842057 Msa1160060:intron 30.0%
!! TATCCGGTTTAATTTGAATC+AGG + chr7_4:49842392-49842411 Msa1160060:intron 30.0%
GAACCTGATTCAAATTAAAC+CGG - chr7_4:49842398-49842417 None:intergenic 30.0%
AATTGGTAGAATCTAAACAG+CGG + chr7_4:49842527-49842546 Msa1160060:intron 30.0%
TAACAAATCTCAATGGTTGA+AGG - chr7_4:49842606-49842625 None:intergenic 30.0%
! TCTTTTCACTGCAACAAATT+AGG + chr7_4:49842646-49842665 Msa1160060:intron 30.0%
!!! CACGAAAAATTGTCACTTTT+AGG - chr7_4:49842673-49842692 None:intergenic 30.0%
!! CCGGATCATGAAATTTTAAT+AGG + chr7_4:49842717-49842736 Msa1160060:intron 30.0%
!! TGAAATTTTAATAGGTGTCC+TGG + chr7_4:49842725-49842744 Msa1160060:intron 30.0%
!!! AAAATTTTGGAGTAATGCCA+TGG + chr7_4:49842813-49842832 Msa1160060:intron 30.0%
ATGAAAAAATCATTCCCTTG+AGG - chr7_4:49842889-49842908 None:intergenic 30.0%
! TGAATGTGGAAGTATAAAAC+TGG + chr7_4:49842999-49843018 Msa1160060:intron 30.0%
! GAATGTGGAAGTATAAAACT+GGG + chr7_4:49843000-49843019 Msa1160060:intron 30.0%
!! TAAGCTCTTTTAGTTGATCA+GGG - chr7_4:49843162-49843181 None:intergenic 30.0%
!! TTAAGCTCTTTTAGTTGATC+AGG - chr7_4:49843163-49843182 None:intergenic 30.0%
TAATTCATATGGGAGATCAA+TGG + chr7_4:49843222-49843241 Msa1160060:intron 30.0%
!!! TCTAACTTGCTTTTGATTCA+AGG + chr7_4:49843408-49843427 Msa1160060:intron 30.0%
GAAAAAAGGGTAAAAATGAG+GGG + chr7_4:49843488-49843507 Msa1160060:intron 30.0%
AAAAAAGGGTAAAAATGAGG+GGG + chr7_4:49843489-49843508 Msa1160060:intron 30.0%
ATAGCACAAAAGAAAATAGG+GGG + chr7_4:49843516-49843535 Msa1160060:intron 30.0%
TTGTAGAAGTGACTCAAAAT+TGG + chr7_4:49843740-49843759 Msa1160060:intron 30.0%
!! ACTTCTTGTTCTGGAAAAAT+CGG + chr7_4:49843854-49843873 Msa1160060:intron 30.0%
AAAAACTGTTACGCAAAATC+GGG - chr7_4:49843903-49843922 None:intergenic 30.0%
ATCAGGAACAATGAAACTAT+TGG + chr7_4:49843997-49844016 Msa1160060:intron 30.0%
AAAACTCTAGTAAACATCTC+TGG - chr7_4:49844123-49844142 None:intergenic 30.0%
TTTCTTATATTTGCCTCTGT+TGG + chr7_4:49844159-49844178 Msa1160060:CDS 30.0%
!!! TCTATGACTTGTTCTTTTCT+TGG + chr7_4:49841921-49841940 Msa1160060:intron 30.0%
! AAGTGTGATTGTTGTGTTTT+TGG + chr7_4:49844499-49844518 Msa1160060:CDS 30.0%
! GTACATAATTTGTCCTACAT+AGG + chr7_4:49844548-49844567 Msa1160060:CDS 30.0%
! ATCAAGAAGCGGTTTAAAAT+AGG + chr7_4:49844641-49844660 Msa1160060:intron 30.0%
! TAATTTGTATGCAAGGAAAG+TGG + chr7_4:49845299-49845318 Msa1160060:intron 30.0%
! ATTCTATACATTCCTTTTGC+TGG + chr7_4:49845361-49845380 Msa1160060:intron 30.0%
TTTCAAATATAGCCAGCAAA+AGG - chr7_4:49845376-49845395 None:intergenic 30.0%
GATTATGTGATATGAAGAGT+AGG + chr7_4:49845476-49845495 Msa1160060:intron 30.0%
AAATTGCAGAAGGAGAATAT+AGG - chr7_4:49845515-49845534 None:intergenic 30.0%
!!! TAAAAAAAGGTTTTGGGAAG+TGG - chr7_4:49845808-49845827 None:intergenic 30.0%
!!! CCAGCTGTTTTAATATGAAT+TGG - chr7_4:49846121-49846140 None:intergenic 30.0%
CCAATTCATATTAAAACAGC+TGG + chr7_4:49846118-49846137 Msa1160060:intron 30.0%
CAAAAAAAATATATCCTGGC+GGG - chr7_4:49846438-49846457 None:intergenic 30.0%
CAAAAAAAATATATCCTGGC+GGG - chr7_4:49846438-49846457 None:intergenic 30.0%
CAAAAAAAATATATCCTGGC+GGG - chr7_4:49846438-49846457 None:intergenic 30.0%
TGTATTTATAGAGAAGTTGG+GGG + chr7_4:49847312-49847331 Msa1160060:intron 30.0%
ATGAATGAATATTCTATGGG+CGG - chr7_4:49847371-49847390 None:intergenic 30.0%
TGTATTTATAGAGAAGTTGG+GGG + chr7_4:49847312-49847331 Msa1160060:intron 30.0%
ATGAATGAATATTCTATGGG+CGG - chr7_4:49847371-49847390 None:intergenic 30.0%
CAAGTTCGATTAATCTCAAA+AGG + chr7_4:49847763-49847782 Msa1160060:CDS 30.0%
!! GACTCAATAGATTTTTGAAG+AGG - chr7_4:49847941-49847960 None:intergenic 30.0%
TTGATGGGATTATATGGAAA+GGG + chr7_4:49848212-49848231 Msa1160060:CDS 30.0%
GAAGGAAAAGGAAATGTGAT+TGG - chr7_4:49841267-49841286 None:intergenic 35.0%
! AGCCAAGTATGCATTTTTGA+AGG - chr7_4:49841285-49841304 None:intergenic 35.0%
ACACTACATGTTGCAATTCT+TGG + chr7_4:49841377-49841396 Msa1160060:CDS 35.0%
ATCACAATGTTAGGATCATC+AGG - chr7_4:49841522-49841541 None:intergenic 35.0%
GATTAGGTTAGTAGAGCTAT+TGG + chr7_4:49841664-49841683 Msa1160060:intron 35.0%
AAAACTCTAGTATGCATCTC+TGG - chr7_4:49841790-49841809 None:intergenic 35.0%
!! TATTTGCTTCTGATGGACTT+TGG + chr7_4:49841833-49841852 Msa1160060:CDS 35.0%
!! ATTTGCTTCTGATGGACTTT+GGG + chr7_4:49841834-49841853 Msa1160060:CDS 35.0%
GTGTTTCTTCTCAATGTGAA+AGG - chr7_4:49841952-49841971 None:intergenic 35.0%
! TTTTGCAGGGAATTACGAAA+AGG + chr7_4:49842088-49842107 Msa1160060:intron 35.0%
AAAGAAGGAAGGTTGCTTAT+AGG + chr7_4:49842142-49842161 Msa1160060:CDS 35.0%
TATCATCATGAAAAGACCTC+CGG - chr7_4:49842206-49842225 None:intergenic 35.0%
AAGTGTGATTGTTGTGTTCT+TGG + chr7_4:49842227-49842246 Msa1160060:CDS 35.0%
CGTGCAAAATCTGATTGTAT+AGG - chr7_4:49842315-49842334 None:intergenic 35.0%
! TTGATTTTTCCTCAGTTGTC+CGG + chr7_4:49842698-49842717 Msa1160060:intron 35.0%
TGACAATCTTTAGCACTAAC+CGG - chr7_4:49842844-49842863 None:intergenic 35.0%
AAAAGCTTCCTAGTGATCAT+TGG + chr7_4:49843065-49843084 Msa1160060:intron 35.0%
!! TTTTGATTCAAGGCACATGA+GGG + chr7_4:49843418-49843437 Msa1160060:intron 35.0%
TGCAATATTATGAATTGGCG+CGG - chr7_4:49843691-49843710 None:intergenic 35.0%
AGTGACTCAAAATTGGAGTT+TGG + chr7_4:49843747-49843766 Msa1160060:intron 35.0%
!!! TATGCTATGATGGATTTTGC+AGG + chr7_4:49844391-49844410 Msa1160060:intron 35.0%
!!! ATGCTATGATGGATTTTGCA+GGG + chr7_4:49844392-49844411 Msa1160060:intron 35.0%
ATTAATTGCTTCAAGGCTGA+AGG + chr7_4:49844613-49844632 Msa1160060:CDS 35.0%
ACATCTATTATATGGCCTCA+AGG + chr7_4:49845121-49845140 Msa1160060:intron 35.0%
CATCTATTATATGGCCTCAA+GGG + chr7_4:49845122-49845141 Msa1160060:intron 35.0%
TATGAAAACTCATTCCCTTG+AGG - chr7_4:49845139-49845158 None:intergenic 35.0%
TATTCACAATTCACGTTGGT+AGG + chr7_4:49845602-49845621 Msa1160060:intron 35.0%
TCTTTCTTCGAGCTTCAAAA+AGG + chr7_4:49845882-49845901 Msa1160060:intron 35.0%
AGAGAAAGAAGATGTTGAGT+AGG - chr7_4:49845961-49845980 None:intergenic 35.0%
AAAATTGAAGGAAACATGCG+TGG - chr7_4:49846088-49846107 None:intergenic 35.0%
TAATATGAATTGGCGAGAAC+AGG - chr7_4:49846111-49846130 None:intergenic 35.0%
! TCCAGAATTATGTGTTGTTG+TGG + chr7_4:49846346-49846365 Msa1160060:intron 35.0%
ACCACAACAACACATAATTC+TGG - chr7_4:49846350-49846369 None:intergenic 35.0%
! AGAATTATGTGTTGTTGTGG+TGG + chr7_4:49846349-49846368 Msa1160060:intron 35.0%
!! GAGTGTTACTTGTATAACCT+CGG + chr7_4:49846383-49846402 Msa1160060:intron 35.0%
TGAAGTTATTGATGAACAGC+TGG + chr7_4:49846485-49846504 Msa1160060:intron 35.0%
TACCCTTCATAGAAATTCAG+TGG + chr7_4:49846608-49846627 Msa1160060:intron 35.0%
! TCCAGAATTATGTGTTGTTG+TGG + chr7_4:49846346-49846365 Msa1160060:intron 35.0%
ACCACAACAACACATAATTC+TGG - chr7_4:49846350-49846369 None:intergenic 35.0%
! AGAATTATGTGTTGTTGTGG+TGG + chr7_4:49846349-49846368 Msa1160060:intron 35.0%
!! GAGTGTTACTTGTATAACCT+CGG + chr7_4:49846383-49846402 Msa1160060:intron 35.0%
TGAAGTTATTGATGAACAGC+TGG + chr7_4:49846485-49846504 Msa1160060:intron 35.0%
! TCCAGAATTATGTGTTGTTG+TGG + chr7_4:49846346-49846365 Msa1160060:intron 35.0%
ACCACAACAACACATAATTC+TGG - chr7_4:49846350-49846369 None:intergenic 35.0%
! AGAATTATGTGTTGTTGTGG+TGG + chr7_4:49846349-49846368 Msa1160060:intron 35.0%
!! GAGTGTTACTTGTATAACCT+CGG + chr7_4:49846383-49846402 Msa1160060:intron 35.0%
GTATTTATAGAGAAGTTGGG+GGG + chr7_4:49847313-49847332 Msa1160060:intron 35.0%
TATTTATAGAGAAGTTGGGG+GGG + chr7_4:49847314-49847333 Msa1160060:intron 35.0%
! GAGAGTGATGATTTGAAGTA+TGG - chr7_4:49847414-49847433 None:intergenic 35.0%
GTATTTATAGAGAAGTTGGG+GGG + chr7_4:49847313-49847332 Msa1160060:intron 35.0%
TATTTATAGAGAAGTTGGGG+GGG + chr7_4:49847314-49847333 Msa1160060:intron 35.0%
! GAGAGTGATGATTTGAAGTA+TGG - chr7_4:49847414-49847433 None:intergenic 35.0%
!! AATCTCAAAAGGCATTGCTA+TGG + chr7_4:49847774-49847793 Msa1160060:CDS 35.0%
! TTCTAGAAGCAACTTCAACT+TGG - chr7_4:49847851-49847870 None:intergenic 35.0%
TCTAGAAATGCACTCTTTCT+TGG + chr7_4:49847864-49847883 Msa1160060:CDS 35.0%
GAACCAAATCTTGGAAATGT+TGG + chr7_4:49848178-49848197 Msa1160060:CDS 35.0%
GAACCAACATTTCCAAGATT+TGG - chr7_4:49848184-49848203 None:intergenic 35.0%
CTTGATGGGATTATATGGAA+AGG + chr7_4:49848211-49848230 Msa1160060:CDS 35.0%
TTTGCTTTATGCTGTCTTGC+TGG + chr7_4:49841339-49841358 Msa1160060:CDS 40.0%
TCTTGCTGGAACTATATGGA+AGG + chr7_4:49841353-49841372 Msa1160060:CDS 40.0%
CTTGCTGGAACTATATGGAA+GGG + chr7_4:49841354-49841373 Msa1160060:CDS 40.0%
AATGGATCATGGCGTGTTAA+AGG + chr7_4:49841549-49841568 Msa1160060:CDS 40.0%
GCGTGTTAAAGGCTTCATTA+TGG + chr7_4:49841560-49841579 Msa1160060:CDS 40.0%
TTGGCGATGCATATTTGAAG+AGG + chr7_4:49841683-49841702 Msa1160060:CDS 40.0%
! GTTCCTGAACCTTTTACAAG+AGG + chr7_4:49841748-49841767 Msa1160060:CDS 40.0%
ACACCTCTTGTAAAAGGTTC+AGG - chr7_4:49841754-49841773 None:intergenic 40.0%
GATAGCACACCTCTTGTAAA+AGG - chr7_4:49841760-49841779 None:intergenic 40.0%
!!! TATTCTGTGGTGGATTTTGC+AGG + chr7_4:49842074-49842093 Msa1160060:intron 40.0%
!!! ATTCTGTGGTGGATTTTGCA+GGG + chr7_4:49842075-49842094 Msa1160060:intron 40.0%
GGTTGCTTATAGGAAGATTG+AGG + chr7_4:49842152-49842171 Msa1160060:CDS 40.0%
! CAATCAGATTTTGCACGATC+TGG + chr7_4:49842318-49842337 Msa1160060:CDS 40.0%
GATCTGGATTAACCATTCCA+AGG + chr7_4:49842334-49842353 Msa1160060:CDS 40.0%
GGAGTCTGAAGGATATTATC+CGG + chr7_4:49842376-49842395 Msa1160060:intron 40.0%
ACATCTATTATACGGCCTCA+AGG + chr7_4:49842871-49842890 Msa1160060:intron 40.0%
CATCTATTATACGGCCTCAA+GGG + chr7_4:49842872-49842891 Msa1160060:intron 40.0%
TCATCAAGTGCTTGAGGATT+AGG - chr7_4:49842982-49843001 None:intergenic 40.0%
GACATCAACCAATGATCACT+AGG - chr7_4:49843076-49843095 None:intergenic 40.0%
!! CTTTTGATTCAAGGCACATG+AGG + chr7_4:49843417-49843436 Msa1160060:intron 40.0%
AGAAAATAGGGGGACCAAAA+TGG + chr7_4:49843526-49843545 Msa1160060:intron 40.0%
!!! GTTTGCCTATTGTGCCATTT+TGG - chr7_4:49843543-49843562 None:intergenic 40.0%
GAGTGCAAAATCATGTTTGC+TGG + chr7_4:49843769-49843788 Msa1160060:intron 40.0%
TTTGCTGGAAGACCCAAAAT+CGG + chr7_4:49843784-49843803 Msa1160060:intron 40.0%
GTTCCTGAATCTTCTACTAG+AGG + chr7_4:49844081-49844100 Msa1160060:intron 40.0%
ACACCTCTAGTAGAAGATTC+AGG - chr7_4:49844087-49844106 None:intergenic 40.0%
TATTTGCCTCTGTTGGACTT+TGG + chr7_4:49844166-49844185 Msa1160060:CDS 40.0%
ATTTGCCTCTGTTGGACTTT+GGG + chr7_4:49844167-49844186 Msa1160060:CDS 40.0%
! TTTTGCAGGGAATTGCGAAA+AGG + chr7_4:49844405-49844424 Msa1160060:intron 40.0%
TGGACAAAAAGTTGTTCCTG+AGG + chr7_4:49844519-49844538 Msa1160060:CDS 40.0%
ACAAAAAGTTGTTCCTGAGG+AGG + chr7_4:49844522-49844541 Msa1160060:CDS 40.0%
! CTCTACCATCAGATTTTGCA+CGG + chr7_4:49844585-49844604 Msa1160060:CDS 40.0%
GGTCTGGATTAATTGCTTCA+AGG + chr7_4:49844606-49844625 Msa1160060:CDS 40.0%
TGAAGGATCGTATCAAGAAG+CGG + chr7_4:49844630-49844649 Msa1160060:CDS 40.0%
!! ATTGCATGAATCTAGCTCTC+AGG + chr7_4:49844667-49844686 Msa1160060:intron 40.0%
! ATTTGAGTGTTCTAAGCCAG+AGG - chr7_4:49844701-49844720 None:intergenic 40.0%
TTGACAAGCTGAAACCCATT+AGG - chr7_4:49844948-49844967 None:intergenic 40.0%
!! GTTTTAAATTTGAGGGGGTG+TGG - chr7_4:49844997-49845016 None:intergenic 40.0%
CAAGCAAACGCAGAATTGAA+GGG - chr7_4:49845341-49845360 None:intergenic 40.0%
TCAAGCAAACGCAGAATTGA+AGG - chr7_4:49845342-49845361 None:intergenic 40.0%
CTCGCAAGATGAGAAAGATT+TGG + chr7_4:49845647-49845666 Msa1160060:intron 40.0%
! TGAGAAAGATTTGGTACGCA+TGG + chr7_4:49845656-49845675 Msa1160060:intron 40.0%
! GAGAAAGATTTGGTACGCAT+GGG + chr7_4:49845657-49845676 Msa1160060:intron 40.0%
GTACTACTAGTACTACGAAC+TGG - chr7_4:49845704-49845723 None:intergenic 40.0%
! ACTCACTTGTCTCGATTTGT+CGG + chr7_4:49845994-49846013 Msa1160060:intron 40.0%
! TCAGTGGCGAGATATTTTCT+TGG + chr7_4:49846276-49846295 Msa1160060:intron 40.0%
! CAGTGGCGAGATATTTTCTT+GGG + chr7_4:49846277-49846296 Msa1160060:intron 40.0%
! AGTGGCGAGATATTTTCTTG+GGG + chr7_4:49846278-49846297 Msa1160060:intron 40.0%
CGCCACTGAATTTCTATGAA+GGG - chr7_4:49846613-49846632 None:intergenic 40.0%
TCGCCACTGAATTTCTATGA+AGG - chr7_4:49846614-49846633 None:intergenic 40.0%
! TCAGTGGCGAGATATTTTCT+TGG + chr7_4:49846276-49846295 Msa1160060:intron 40.0%
! CAGTGGCGAGATATTTTCTT+GGG + chr7_4:49846277-49846296 Msa1160060:intron 40.0%
! AGTGGCGAGATATTTTCTTG+GGG + chr7_4:49846278-49846297 Msa1160060:intron 40.0%
! TCAGTGGCGAGATATTTTCT+TGG + chr7_4:49846276-49846295 Msa1160060:intron 40.0%
! CAGTGGCGAGATATTTTCTT+GGG + chr7_4:49846277-49846296 Msa1160060:intron 40.0%
! AGTGGCGAGATATTTTCTTG+GGG + chr7_4:49846278-49846297 Msa1160060:intron 40.0%
ATGCTTCATGGTTGTTGTAG+TGG - chr7_4:49847272-49847291 None:intergenic 40.0%
ATGCTTCATGGTTGTTGTAG+TGG - chr7_4:49847272-49847291 None:intergenic 40.0%
GATTAATCGAACTTGCGAGA+GGG - chr7_4:49847758-49847777 None:intergenic 40.0%
AGATTAATCGAACTTGCGAG+AGG - chr7_4:49847759-49847778 None:intergenic 40.0%
!! ATTGGCTTGAACAACAACAC+TGG - chr7_4:49847808-49847827 None:intergenic 40.0%
TCGATCTTGCATAGCTGTAT+TGG - chr7_4:49847826-49847845 None:intergenic 40.0%
CTCTTTCTTGGAGTTTACGA+CGG + chr7_4:49847876-49847895 Msa1160060:CDS 40.0%
! TGCTACTGAAGACGGTTTTA+TGG + chr7_4:49848129-49848148 Msa1160060:CDS 40.0%
TTGGTTCATGCTGTCTTGAT+GGG + chr7_4:49848197-49848216 Msa1160060:CDS 40.0%
GCTGTCTTGATGGGATTATA+TGG + chr7_4:49848206-49848225 Msa1160060:CDS 40.0%
GCTGTCTTGCTGGAACTATA+TGG + chr7_4:49841349-49841368 Msa1160060:CDS 45.0%
GCGCACTGTAATTGGTACTA+TGG + chr7_4:49841406-49841425 Msa1160060:intron 45.0%
TTTAGCAGCTACCGCTAGAA+CGG - chr7_4:49842124-49842143 None:intergenic 45.0%
TAGCGGTAGCTGCTAAAAGA+AGG + chr7_4:49842127-49842146 Msa1160060:CDS 45.0%
GGTAGCTGCTAAAAGAAGGA+AGG + chr7_4:49842131-49842150 Msa1160060:CDS 45.0%
TGGACAAAACGTCGTTTCTG+AGG + chr7_4:49842247-49842266 Msa1160060:CDS 45.0%
CATGTCTGATGAGCTTCTGT+AGG - chr7_4:49842292-49842311 None:intergenic 45.0%
!! CATCACATGCATCTAGCTCT+CGG + chr7_4:49842417-49842436 Msa1160060:CDS 45.0%
!! ATCACATGCATCTAGCTCTC+GGG + chr7_4:49842418-49842437 Msa1160060:CDS 45.0%
TTTCATGATCCGGACAACTG+AGG - chr7_4:49842710-49842729 None:intergenic 45.0%
TCCTGGAGTTTGTGACACAA+AGG + chr7_4:49842742-49842761 Msa1160060:intron 45.0%
TCCTTTGTGTCACAAACTCC+AGG - chr7_4:49842746-49842765 None:intergenic 45.0%
GAGTAATGCCATGGACAATC+CGG + chr7_4:49842822-49842841 Msa1160060:intron 45.0%
CCACATTCATCAAGTGCTTG+AGG - chr7_4:49842988-49843007 None:intergenic 45.0%
CCTCAAGCACTTGATGAATG+TGG + chr7_4:49842985-49843004 Msa1160060:intron 45.0%
GCATCTCCGAATCTTGTAAG+TGG - chr7_4:49843190-49843209 None:intergenic 45.0%
TGGCACAATAGGCAAACTAG+AGG + chr7_4:49843546-49843565 Msa1160060:intron 45.0%
GGCACAATAGGCAAACTAGA+GGG + chr7_4:49843547-49843566 Msa1160060:intron 45.0%
GCACAATAGGCAAACTAGAG+GGG + chr7_4:49843548-49843567 Msa1160060:intron 45.0%
ATTATGAATTGGCGCGGAAG+AGG - chr7_4:49843685-49843704 None:intergenic 45.0%
!!! AGAAATCGGGCACCGATTTT+GGG - chr7_4:49843799-49843818 None:intergenic 45.0%
CAGAACAAGAAGTCTCCCAA+AGG - chr7_4:49843847-49843866 None:intergenic 45.0%
! CTTTGGGAGACTTCTTGTTC+TGG + chr7_4:49843845-49843864 Msa1160060:intron 45.0%
GATTCGTGCAGCGTAAATTC+AGG - chr7_4:49844042-49844061 None:intergenic 45.0%
GGAGTTCTTGTCAAATGAGC+AGG + chr7_4:49844188-49844207 Msa1160060:CDS 45.0%
CCTGCTCACATTTCTTCTGT+TGG - chr7_4:49844459-49844478 None:intergenic 45.0%
CCAACAGAAGAAATGTGAGC+AGG + chr7_4:49844456-49844475 Msa1160060:CDS 45.0%
ACAGAAGAAATGTGAGCAGG+AGG + chr7_4:49844459-49844478 Msa1160060:CDS 45.0%
CGTGCAAAATCTGATGGTAG+AGG - chr7_4:49844587-49844606 None:intergenic 45.0%
! TGAGAATGAGAGTGTGAGTG+AGG + chr7_4:49845452-49845471 Msa1160060:intron 45.0%
! GAGAATGAGAGTGTGAGTGA+GGG + chr7_4:49845453-49845472 Msa1160060:intron 45.0%
! AGAATGAGAGTGTGAGTGAG+GGG + chr7_4:49845454-49845473 Msa1160060:intron 45.0%
! TCACAATTCACGTTGGTAGG+CGG + chr7_4:49845605-49845624 Msa1160060:intron 45.0%
GGCGAGAACAGGAAAATTGA+AGG - chr7_4:49846100-49846119 None:intergenic 45.0%
! GTGGCGAGATATTTTCTTGG+GGG + chr7_4:49846279-49846298 Msa1160060:intron 45.0%
! GTGGCGAGATATTTTCTTGG+GGG + chr7_4:49846279-49846298 Msa1160060:intron 45.0%
! GTGGCGAGATATTTTCTTGG+GGG + chr7_4:49846279-49846298 Msa1160060:intron 45.0%
!! TCTCTCACCTGAAAGCATCT+GGG + chr7_4:49847430-49847449 Msa1160060:intron 45.0%
! GGATGCATCTTTGAAGGAGA+AGG - chr7_4:49847666-49847685 None:intergenic 45.0%
CTCCTTCAAAGATGCATCCT+TGG + chr7_4:49847667-49847686 Msa1160060:intron 45.0%
AGCCAAGGATGCATCTTTGA+AGG - chr7_4:49847672-49847691 None:intergenic 45.0%
! GAGGTGTTCACAGATGAACT+TGG - chr7_4:49847922-49847941 None:intergenic 45.0%
ATATAACTGAAGCTGCCCTG+AGG + chr7_4:49848095-49848114 Msa1160060:CDS 45.0%
TATAACTGAAGCTGCCCTGA+GGG + chr7_4:49848096-49848115 Msa1160060:CDS 45.0%
!! GCTGTTTCTGCTACTGAAGA+CGG + chr7_4:49848121-49848140 Msa1160060:CDS 45.0%
! GTTGGTTCATGCTGTCTTGA+TGG + chr7_4:49848196-49848215 Msa1160060:CDS 45.0%
ACGCTACATGTTGCGAATCT+TGG + chr7_4:49848235-49848254 Msa1160060:CDS 45.0%
!! ATATATATTATAACAATATT+TGG - chr7_4:49846307-49846326 None:intergenic 5.0%
!! ATATATATTATAACAATATT+TGG - chr7_4:49846307-49846326 None:intergenic 5.0%
!!! ATATTTTTATTTTATGTTAT+TGG + chr7_4:49848037-49848056 Msa1160060:intron 5.0%
GGAGATTCGCGCACTGTAAT+TGG + chr7_4:49841398-49841417 Msa1160060:intron 50.0%
! GCTTCTGAGTACCGTTCTAG+CGG + chr7_4:49842110-49842129 Msa1160060:CDS 50.0%
CAATGACTGCAGCCTTGGAA+TGG - chr7_4:49842349-49842368 None:intergenic 50.0%
TTCCAAGGCTGCAGTCATTG+AGG + chr7_4:49842349-49842368 Msa1160060:CDS 50.0%
!! ATTGAGGCATCGGAGTCTGA+AGG + chr7_4:49842365-49842384 Msa1160060:intron 50.0%
!! TCACATGCATCTAGCTCTCG+GGG + chr7_4:49842419-49842438 Msa1160060:CDS 50.0%
TCTGAACCCTCAAACCCTTG+AGG + chr7_4:49842460-49842479 Msa1160060:CDS 50.0%
CTGAACCCTCAAACCCTTGA+GGG + chr7_4:49842461-49842480 Msa1160060:CDS 50.0%
AGCACTAACCGGATTGTCCA+TGG - chr7_4:49842833-49842852 None:intergenic 50.0%
GGGGACCAAAATGGCACAAT+AGG + chr7_4:49843535-49843554 Msa1160060:intron 50.0%
GCGCGGAAGAGGAAAATTGA+AGG - chr7_4:49843674-49843693 None:intergenic 50.0%
!!! CAGAAATCGGGCACCGATTT+TGG - chr7_4:49843800-49843819 None:intergenic 50.0%
! CAAAATCGGTGCCCGATTTC+TGG + chr7_4:49843798-49843817 Msa1160060:intron 50.0%
TCCCAAAGGCAGCCAAAATC+GGG - chr7_4:49843833-49843852 None:intergenic 50.0%
CTCCCAAAGGCAGCCAAAAT+CGG - chr7_4:49843834-49843853 None:intergenic 50.0%
!! GGCGCCCGATTTGGTAAATT+CGG + chr7_4:49843875-49843894 Msa1160060:intron 50.0%
!! GCGCCCGATTTGGTAAATTC+GGG + chr7_4:49843876-49843895 Msa1160060:intron 50.0%
!! CGCCCGATTTGGTAAATTCG+GGG + chr7_4:49843877-49843896 Msa1160060:intron 50.0%
GGCCCCGAATTTACCAAATC+GGG - chr7_4:49843882-49843901 None:intergenic 50.0%
GGGCCCCGAATTTACCAAAT+CGG - chr7_4:49843883-49843902 None:intergenic 50.0%
GAACTCCCAAAGTCCAACAG+AGG - chr7_4:49844175-49844194 None:intergenic 50.0%
AATTATGTACGCGCCTCCTC+AGG - chr7_4:49844538-49844557 None:intergenic 50.0%
CGTGTCTGATGAGCCTATGT+AGG - chr7_4:49844564-49844583 None:intergenic 50.0%
CCAGACCGTGCAAAATCTGA+TGG - chr7_4:49844593-49844612 None:intergenic 50.0%
! CCATCAGATTTTGCACGGTC+TGG + chr7_4:49844590-49844609 Msa1160060:CDS 50.0%
!! TGAATCTAGCTCTCAGGCTC+AGG + chr7_4:49844673-49844692 Msa1160060:intron 50.0%
!! GAATCTAGCTCTCAGGCTCA+GGG + chr7_4:49844674-49844693 Msa1160060:intron 50.0%
! ATTCACGTTGGTAGGCGGTA+CGG + chr7_4:49845610-49845629 Msa1160060:intron 50.0%
GTTCAACTCCCGCATAACCT+CGG + chr7_4:49846405-49846424 Msa1160060:intron 50.0%
GAGTTGAACCGAGGTTATGC+GGG - chr7_4:49846416-49846435 None:intergenic 50.0%
GGAGTTGAACCGAGGTTATG+CGG - chr7_4:49846417-49846436 None:intergenic 50.0%
GTTCAACTCCCGCATAACCT+CGG + chr7_4:49846405-49846424 Msa1160060:intron 50.0%
GAGTTGAACCGAGGTTATGC+GGG - chr7_4:49846416-49846435 None:intergenic 50.0%
GGAGTTGAACCGAGGTTATG+CGG - chr7_4:49846417-49846436 None:intergenic 50.0%
GTTCAACTCCCGCATAACCT+CGG + chr7_4:49846405-49846424 Msa1160060:intron 50.0%
GAGTTGAACCGAGGTTATGC+GGG - chr7_4:49846416-49846435 None:intergenic 50.0%
GGAGTTGAACCGAGGTTATG+CGG - chr7_4:49846417-49846436 None:intergenic 50.0%
!! ACACACGCCATGAAAGCATC+TGG + chr7_4:49847235-49847254 Msa1160060:intron 50.0%
!! CACACGCCATGAAAGCATCT+GGG + chr7_4:49847236-49847255 Msa1160060:intron 50.0%
!! ACACGCCATGAAAGCATCTG+GGG + chr7_4:49847237-49847256 Msa1160060:intron 50.0%
!! CTCTCTCACCTGAAAGCATC+TGG + chr7_4:49847429-49847448 Msa1160060:intron 50.0%
!! CTCTCACCTGAAAGCATCTG+GGG + chr7_4:49847431-49847450 Msa1160060:intron 50.0%
!! TCTCACCTGAAAGCATCTGG+GGG + chr7_4:49847432-49847451 Msa1160060:intron 50.0%
!! TGGAAGTATCGAAGCCACCA+TGG - chr7_4:49847902-49847921 None:intergenic 50.0%
AGCAGAAACAGCATCCCTCA+GGG - chr7_4:49848113-49848132 None:intergenic 50.0%
TAGCAGAAACAGCATCCCTC+AGG - chr7_4:49848114-49848133 None:intergenic 50.0%
GAAGATTGAGGCCTCTGCTC+CGG + chr7_4:49842164-49842183 Msa1160060:CDS 55.0%
AAGATTGAGGCCTCTGCTCC+GGG + chr7_4:49842165-49842184 Msa1160060:CDS 55.0%
ATTGTTGCATCCCGGAGCAG+AGG - chr7_4:49842178-49842197 None:intergenic 55.0%
CGGCTCACATTGTTGCATCC+CGG - chr7_4:49842186-49842205 None:intergenic 55.0%
CGGGATGCAACAATGTGAGC+CGG + chr7_4:49842184-49842203 Msa1160060:CDS 55.0%
GATGCAACAATGTGAGCCGG+AGG + chr7_4:49842187-49842206 Msa1160060:CDS 55.0%
TGCCTCAATGACTGCAGCCT+TGG - chr7_4:49842354-49842373 None:intergenic 55.0%
GGCTGCAGTCATTGAGGCAT+CGG + chr7_4:49842355-49842374 Msa1160060:CDS 55.0%
GTTTGAGGGTTCAGAGCCAG+AGG - chr7_4:49842455-49842474 None:intergenic 55.0%
TCTCGCCCTCAAGGGTTTGA+GGG - chr7_4:49842469-49842488 None:intergenic 55.0%
TTGAGAGCTCTCGCCCTCAA+GGG - chr7_4:49842477-49842496 None:intergenic 55.0%
TTTGAGAGCTCTCGCCCTCA+AGG - chr7_4:49842478-49842497 None:intergenic 55.0%
GGCGAGAGCTCTCAAACTGA+GGG + chr7_4:49842482-49842501 Msa1160060:CDS 55.0%
AGCTCTCAAACTGAGGGCGA+GGG + chr7_4:49842488-49842507 Msa1160060:CDS 55.0%
AAACTGAGGGCGAGGGTTCT+CGG + chr7_4:49842495-49842514 Msa1160060:intron 55.0%
GTTCTCGGGCTCAGAGCAAT+TGG + chr7_4:49842510-49842529 Msa1160060:intron 55.0%
!! GGTGCCCGATTTCTGGAGTT+CGG + chr7_4:49843805-49843824 Msa1160060:intron 55.0%
!! GTGCCCGATTTCTGGAGTTC+GGG + chr7_4:49843806-49843825 Msa1160060:intron 55.0%
!! TGCCCGATTTCTGGAGTTCG+GGG + chr7_4:49843807-49843826 Msa1160060:intron 55.0%
!!! GCCCGATTTTGGCTGCCTTT+GGG + chr7_4:49843829-49843848 Msa1160060:intron 55.0%
GGAAAAATCGGCGCCCGATT+TGG + chr7_4:49843866-49843885 Msa1160060:intron 55.0%
GTTATGCGGGAGTTGAACCG+AGG - chr7_4:49846403-49846422 None:intergenic 55.0%
GTTATGCGGGAGTTGAACCG+AGG - chr7_4:49846403-49846422 None:intergenic 55.0%
GTTATGCGGGAGTTGAACCG+AGG - chr7_4:49846403-49846422 None:intergenic 55.0%
!! CACGCCATGAAAGCATCTGG+GGG + chr7_4:49847238-49847257 Msa1160060:intron 55.0%
!! ACGCCATGAAAGCATCTGGG+GGG + chr7_4:49847239-49847258 Msa1160060:intron 55.0%
ACACCCCCCAGATGCTTTCA+TGG - chr7_4:49847245-49847264 None:intergenic 55.0%
!! CTCACCTGAAAGCATCTGGG+GGG + chr7_4:49847433-49847452 Msa1160060:intron 55.0%
CTTGGAGTTTACGACGGCCA+TGG + chr7_4:49847882-49847901 Msa1160060:CDS 55.0%
TCAGAGCCAGAGGAGTCCGA+GGG - chr7_4:49842445-49842464 None:intergenic 60.0%
TTCAGAGCCAGAGGAGTCCG+AGG - chr7_4:49842446-49842465 None:intergenic 60.0%
CTCTCGCCCTCAAGGGTTTG+AGG - chr7_4:49842470-49842489 None:intergenic 60.0%
GGGCGAGAGCTCTCAAACTG+AGG + chr7_4:49842481-49842500 Msa1160060:CDS 60.0%
GAGCTCTCAAACTGAGGGCG+AGG + chr7_4:49842487-49842506 Msa1160060:CDS 60.0%
AACTGAGGGCGAGGGTTCTC+GGG + chr7_4:49842496-49842515 Msa1160060:intron 60.0%
GGCCCCGAACTCCAGAAATC+GGG - chr7_4:49843812-49843831 None:intergenic 60.0%
GGGCCCCGAACTCCAGAAAT+CGG - chr7_4:49843813-49843832 None:intergenic 60.0%
! TGGAGTTCGGGGCCCGATTT+TGG + chr7_4:49843818-49843837 Msa1160060:intron 60.0%
!!! GGCCCGATTTTGGCTGCCTT+TGG + chr7_4:49843828-49843847 Msa1160060:intron 60.0%
!! GGATCTCCTTTGAGACCCCC+AGG - chr7_4:49847350-49847369 None:intergenic 60.0%
GACACCCCCCAGATGCTTTC+AGG - chr7_4:49847246-49847265 None:intergenic 60.0%
!! GGATCTCCTTTGAGACCCCC+AGG - chr7_4:49847350-49847369 None:intergenic 60.0%
GGAGTTTACGACGGCCATGG+TGG + chr7_4:49847885-49847904 Msa1160060:CDS 60.0%
!! CATCTAGCTCTCGGGGCCCT+CGG + chr7_4:49842426-49842445 Msa1160060:CDS 65.0%
CTCTCAGGCTCAGGGTCCTC+TGG + chr7_4:49844682-49844701 Msa1160060:intron 65.0%
ACCTCGGTTCAACTCCCGCC+AGG + chr7_4:49846421-49846440 Msa1160060:intron 65.0%
TCCTGGCGGGAGTTGAACCG+AGG - chr7_4:49846425-49846444 None:intergenic 65.0%
ACCTCGGTTCAACTCCCGCC+AGG + chr7_4:49846421-49846440 Msa1160060:intron 65.0%
TCCTGGCGGGAGTTGAACCG+AGG - chr7_4:49846425-49846444 None:intergenic 65.0%
ACCTCGGTTCAACTCCCGCC+AGG + chr7_4:49846421-49846440 Msa1160060:intron 65.0%
TCCTGGCGGGAGTTGAACCG+AGG - chr7_4:49846425-49846444 None:intergenic 65.0%
! GAGAAGTTGGGGGGGTGCAG+TGG + chr7_4:49847322-49847341 Msa1160060:intron 65.0%
GTGGCACCTGGGGGTCTCAA+AGG + chr7_4:49847341-49847360 Msa1160060:intron 65.0%
! GAGAAGTTGGGGGGGTGCAG+TGG + chr7_4:49847322-49847341 Msa1160060:intron 65.0%
GTGGCACCTGGGGGTCTCAA+AGG + chr7_4:49847341-49847360 Msa1160060:intron 65.0%
TCGGGGCCCTCGGACTCCTC+TGG + chr7_4:49842436-49842455 Msa1160060:CDS 75.0%
! TGGGGGGGTGCAGTGGCACC+TGG + chr7_4:49847329-49847348 Msa1160060:intron 75.0%
! GGGGGGGTGCAGTGGCACCT+GGG + chr7_4:49847330-49847349 Msa1160060:intron 75.0%
! GGGGGGTGCAGTGGCACCTG+GGG + chr7_4:49847331-49847350 Msa1160060:intron 75.0%
! GGGGGTGCAGTGGCACCTGG+GGG + chr7_4:49847332-49847351 Msa1160060:intron 75.0%
! TGGGGGGGTGCAGTGGCACC+TGG + chr7_4:49847329-49847348 Msa1160060:intron 75.0%
! GGGGGGGTGCAGTGGCACCT+GGG + chr7_4:49847330-49847349 Msa1160060:intron 75.0%
! GGGGGGTGCAGTGGCACCTG+GGG + chr7_4:49847331-49847350 Msa1160060:intron 75.0%
! GGGGGTGCAGTGGCACCTGG+GGG + chr7_4:49847332-49847351 Msa1160060:intron 75.0%
Chromosome Type Strat End Strand Name
chr7_4 gene 49841078 49848264 49841078 ID=Msa1160060;Name=Msa1160060
chr7_4 mRNA 49841078 49848264 49841078 ID=Msa1160060-mRNA-1;Parent=Msa1160060;Name=Msa1160060-mRNA-1;_AED=0.34;_eAED=0.34;_QI=0|0|0|0.90|0.4|0.18|11|0|550
chr7_4 exon 49841078 49841085 49841078 ID=Msa1160060-mRNA-1:exon:13811;Parent=Msa1160060-mRNA-1
chr7_4 exon 49841329 49841412 49841329 ID=Msa1160060-mRNA-1:exon:13812;Parent=Msa1160060-mRNA-1
chr7_4 exon 49841467 49841581 49841467 ID=Msa1160060-mRNA-1:exon:13813;Parent=Msa1160060-mRNA-1
chr7_4 exon 49841670 49841909 49841670 ID=Msa1160060-mRNA-1:exon:13814;Parent=Msa1160060-mRNA-1
chr7_4 exon 49842096 49842286 49842096 ID=Msa1160060-mRNA-1:exon:13815;Parent=Msa1160060-mRNA-1
chr7_4 exon 49842296 49842378 49842296 ID=Msa1160060-mRNA-1:exon:13816;Parent=Msa1160060-mRNA-1
chr7_4 exon 49842414 49842509 49842414 ID=Msa1160060-mRNA-1:exon:13817;Parent=Msa1160060-mRNA-1
chr7_4 exon 49844082 49844242 49844082 ID=Msa1160060-mRNA-1:exon:13818;Parent=Msa1160060-mRNA-1
chr7_4 exon 49844413 49844651 49844413 ID=Msa1160060-mRNA-1:exon:13819;Parent=Msa1160060-mRNA-1
chr7_4 exon 49847716 49847957 49847716 ID=Msa1160060-mRNA-1:exon:13820;Parent=Msa1160060-mRNA-1
chr7_4 exon 49848071 49848264 49848071 ID=Msa1160060-mRNA-1:exon:13821;Parent=Msa1160060-mRNA-1
chr7_4 CDS 49841078 49841085 49841078 ID=Msa1160060-mRNA-1:cds;Parent=Msa1160060-mRNA-1
chr7_4 CDS 49841329 49841412 49841329 ID=Msa1160060-mRNA-1:cds;Parent=Msa1160060-mRNA-1
chr7_4 CDS 49841467 49841581 49841467 ID=Msa1160060-mRNA-1:cds;Parent=Msa1160060-mRNA-1
chr7_4 CDS 49841670 49841909 49841670 ID=Msa1160060-mRNA-1:cds;Parent=Msa1160060-mRNA-1
chr7_4 CDS 49842096 49842286 49842096 ID=Msa1160060-mRNA-1:cds;Parent=Msa1160060-mRNA-1
chr7_4 CDS 49842296 49842378 49842296 ID=Msa1160060-mRNA-1:cds;Parent=Msa1160060-mRNA-1
chr7_4 CDS 49842414 49842509 49842414 ID=Msa1160060-mRNA-1:cds;Parent=Msa1160060-mRNA-1
chr7_4 CDS 49844082 49844242 49844082 ID=Msa1160060-mRNA-1:cds;Parent=Msa1160060-mRNA-1
chr7_4 CDS 49844413 49844651 49844413 ID=Msa1160060-mRNA-1:cds;Parent=Msa1160060-mRNA-1
chr7_4 CDS 49847716 49847957 49847716 ID=Msa1160060-mRNA-1:cds;Parent=Msa1160060-mRNA-1
chr7_4 CDS 49848071 49848264 49848071 ID=Msa1160060-mRNA-1:cds;Parent=Msa1160060-mRNA-1
Gene Sequence

>Msa1160060

ATGACGAAGAATGACAACTTTGCTTTATGCTGTCTTGCTGGAACTATATGGAAGGGACACTACATGTTGCAATTCTTGGAGATTCGCGCACTAGATCACAATTGTAATGATGAAGCTATTAGAGAAGAACTCAAGTCAATGCATCCTGATGATCCTAACATTGTGATAAATGATAATGGATCATGGCGTGTTAAAGGCTTCATTATGGTTAGTAGAGCTATTGGCGATGCATATTTGAAGAGGTCTAAATTTACTTTGCACGCATCATTCCCCAAATTTGAAAAAGTTCCTGAACCTTTTACAAGAGGTGTGCTATCAGCAGAACCAGAGATGCATACTAGAGTTTTAACAGATAGTGATAAGTTTATTATATTTGCTTCTGATGGACTTTGGGAGTTATTGTCAAATAAAAAAGCAGCTGATATTGTTCAAAAAAATCCTAGAAATGGAATTACGAAAAGGCTTCTGAGTACCGTTCTAGCGGTAGCTGCTAAAAGAAGGAAGGTTGCTTATAGGAAGATTGAGGCCTCTGCTCCGGGATGCAACAATGTGAGCCGGAGGTCTTTTCATGATGATATAAGTGTGATTGTTGTGTTCTTGGACAAAACGTCGTTTCTGAGGCAGCTTGTACTTAATTTAAGCTCATCAGACATGCCTATACAATCAGATTTTGCACGATCTGGATTAACCATTCCAAGGCTGCAGTCATTGAGGCATCGGAGTTCATCACATGCATCTAGCTCTCGGGGCCCTCGGACTCCTCTGGCTCTGAACCCTCAAACCCTTGAGGGCGAGAGCTCTCAAACTGAGGGCGAGGTTCCTGAATCTTCTACTAGAGGTGTGCTATCAGTAGAACCAGAGATGTTTACTAGAGTTTTAACAAAGAGCGATAAGTTTCTTATATTTGCCTCTGTTGGACTTTGGGAGTTCTTGTCAAATGAGCAGGCAGTTGAAATTGTTCAAAAGAATCCAAGAAATGGAATTGCGAAAAGGCTTCTGAGTTCTGCTCTAGCTGAAGCTGCCAACAGAAGAAATGTGAGCAGGAGGTCTTTTCATGATCATATAAGTGTGATTGTTGTGTTTTTGGACAAAAAGTTGTTCCTGAGGAGGCGCGTACATAATTTGTCCTACATAGGCTCATCAGACACGCCTCTACCATCAGATTTTGCACGGTCTGGATTAATTGCTTCAAGGCTGAAGGATCGTATCAAGAAGCGGAAAAGAAAGAATGACAACTTAGCTTTATTCGACGAAGACCCTCTCGCAAGTTCGATTAATCTCAAAAGGCATTGCTATGGAGAATTTTCCAGTGTTGTTGTTCAAGCCAATACAGCTATGCAAGATCGAAGCCAAGTTGAAGTTGCTTCTAGAAATGCACTCTTTCTTGGAGTTTACGACGGCCATGGTGGCTTCGATACTTCCAAGTTCATCTGTGAACACCTCTTCAAAAATCTATTGAGGCTTGCTAATGATAGTGAGAATGATATAACTGAAGCTGCCCTGAGGGATGCTGTTTCTGCTACTGAAGACGGTTTTATGGATTTCGTAAAAATAAGTTATATTAAAGAACCAAATCTTGGAAATGTTGGTTCATGCTGTCTTGATGGGATTATATGGAAAGGGACGCTACATGTTGCGAATCTTGGAGACTAG
Protein sequence

>Msa1160060

MTKNDNFALCCLAGTIWKGHYMLQFLEIRALDHNCNDEAIREELKSMHPDDPNIVINDNGSWRVKGFIMVSRAIGDAYLKRSKFTLHASFPKFEKVPEPFTRGVLSAEPEMHTRVLTDSDKFIIFASDGLWELLSNKKAADIVQKNPRNGITKRLLSTVLAVAAKRRKVAYRKIEASAPGCNNVSRRSFHDDISVIVVFLDKTSFLRQLVLNLSSSDMPIQSDFARSGLTIPRLQSLRHRSSSHASSSRGPRTPLALNPQTLEGESSQTEGEVPESSTRGVLSVEPEMFTRVLTKSDKFLIFASVGLWEFLSNEQAVEIVQKNPRNGIAKRLLSSALAEAANRRNVSRRSFHDHISVIVVFLDKKLFLRRRVHNLSYIGSSDTPLPSDFARSGLIASRLKDRIKKRKRKNDNLALFDEDPLASSINLKRHCYGEFSSVVVQANTAMQDRSQVEVASRNALFLGVYDGHGGFDTSKFICEHLFKNLLRLANDSENDITEAALRDAVSATEDGFMDFVKISYIKEPNLGNVGSCCLDGIIWKGTLHVANLGD*