Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1114200 | XP_003625051.2 | 96.154 | 260 | 9 | 1 | 1 | 259 | 1 | 260 | 0.0 | 509 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1114200 | sp|Q9M1K1|ORG2_ARATH | 42.412 | 257 | 127 | 9 | 1 | 243 | 1 | 250 | 1.11e-51 | 172 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1114200 | G7KRQ0 | 96.154 | 260 | 9 | 1 | 1 | 259 | 1 | 260 | 0.0 | 509 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1114200 | TF | bHLH |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1114200 | Msa1160170 | 0.861073 | 1.324938e-63 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1114200 | MtrunA17_Chr7g0256671 | 96.154 | 260 | 9 | 1 | 1 | 259 | 1 | 260 | 0.0 | 509 |
| Msa1114200 | MtrunA17_Chr1g0170581 | 58.943 | 246 | 91 | 7 | 1 | 241 | 1 | 241 | 9.26e-82 | 245 |
| Msa1114200 | MtrunA17_Chr1g0170591 | 56.327 | 245 | 93 | 6 | 1 | 242 | 1 | 234 | 2.07e-80 | 242 |
| Msa1114200 | MtrunA17_Chr1g0170571 | 58.197 | 244 | 88 | 6 | 1 | 241 | 1 | 233 | 2.29e-77 | 234 |
| Msa1114200 | MtrunA17_Chr6g0474681 | 34.211 | 152 | 91 | 4 | 66 | 215 | 6 | 150 | 1.34e-11 | 62.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1114200 | AT3G56970.1 | 42.412 | 257 | 127 | 9 | 1 | 243 | 1 | 250 | 1.13e-52 | 172 |
| Msa1114200 | AT3G56980.1 | 41.445 | 263 | 132 | 7 | 1 | 246 | 1 | 258 | 1.24e-46 | 156 |
| Msa1114200 | AT2G41240.1 | 40.726 | 248 | 127 | 7 | 1 | 240 | 1 | 236 | 4.41e-43 | 147 |
| Msa1114200 | AT2G41240.2 | 40.323 | 248 | 127 | 8 | 1 | 240 | 1 | 235 | 1.36e-40 | 140 |
| Msa1114200 | AT5G04150.2 | 44.048 | 168 | 85 | 3 | 56 | 219 | 76 | 238 | 7.67e-37 | 130 |
| Msa1114200 | AT5G04150.1 | 41.667 | 180 | 96 | 3 | 56 | 231 | 76 | 250 | 1.64e-36 | 130 |
Find 37 sgRNAs with CRISPR-Local
Find 164 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTCTCTTTATGACTAATTA+AGG | 0.218000 | 7_3:+60947247 | None:intergenic |
| AGCTTCTTAGCCATAAGTTT+AGG | 0.275147 | 7_3:+60947140 | None:intergenic |
| TCACTTCGTTCACTTCTTCC+TGG | 0.286326 | 7_3:-60947062 | Msa1114200:CDS |
| GCTTCTTAGCCATAAGTTTA+GGG | 0.291086 | 7_3:+60947141 | None:intergenic |
| AAATAATCATTTGGGCACTA+TGG | 0.310932 | 7_3:-60945693 | Msa1114200:CDS |
| TCTTCTTCTTCTAAAACCTT+TGG | 0.334379 | 7_3:-60946045 | Msa1114200:CDS |
| AAGACACGTGAAATTGTTAC+AGG | 0.334795 | 7_3:+60946336 | None:intergenic |
| GCCACAATCCCCTAAACTTA+TGG | 0.343588 | 7_3:-60947150 | Msa1114200:CDS |
| TCAATCTCAACATGTTCCTT+TGG | 0.352411 | 7_3:+60947176 | None:intergenic |
| TTGATGTGTTTAGAAAATAA+TGG | 0.374175 | 7_3:-60946084 | Msa1114200:CDS |
| AAACATGGGATGGCTCTTAG+AGG | 0.417919 | 7_3:-60947285 | Msa1114200:CDS |
| GGTGAAGAGAATTGATGATA+AGG | 0.444850 | 7_3:+60947197 | None:intergenic |
| GGGATGGCTCTTAGAGGAGT+TGG | 0.478368 | 7_3:-60947279 | Msa1114200:CDS |
| CTCAGATAGAGGAATCTTGT+AGG | 0.481665 | 7_3:+60946110 | None:intergenic |
| TCTTCTTCTAAAACCTTTGG+AGG | 0.482465 | 7_3:-60946042 | Msa1114200:CDS |
| CACATCAAGATCTCAGATAG+AGG | 0.501569 | 7_3:+60946099 | None:intergenic |
| GCCATAAGTTTAGGGGATTG+TGG | 0.507590 | 7_3:+60947149 | None:intergenic |
| TTATGACTAATTAAGGACTC+TGG | 0.527310 | 7_3:+60947254 | None:intergenic |
| CTTCTAAAACCTTTGGAGGG+AGG | 0.546758 | 7_3:-60946038 | Msa1114200:CDS |
| ACGTGTCTTAAAATACATAC+CGG | 0.551566 | 7_3:-60946322 | Msa1114200:CDS |
| TCTTCCTGGTGAAGATCAAA+CGG | 0.553586 | 7_3:-60947048 | Msa1114200:intron |
| ACAAAAGCAGAATTGTAACT+TGG | 0.558897 | 7_3:+60946192 | None:intergenic |
| CTTCTTAGCCATAAGTTTAG+GGG | 0.566289 | 7_3:+60947142 | None:intergenic |
| CTTCTTCTAAAACCTTTGGA+GGG | 0.566421 | 7_3:-60946041 | Msa1114200:CDS |
| ATAGAAGAGCCTCCCTCCAA+AGG | 0.569392 | 7_3:+60946029 | None:intergenic |
| TCATCAATTCTCTTCACCAA+AGG | 0.579398 | 7_3:-60947192 | Msa1114200:CDS |
| GAGTTCTCATACTCAAACAT+GGG | 0.591739 | 7_3:-60947299 | Msa1114200:CDS |
| TCTCATACTCAAACATGGGA+TGG | 0.596383 | 7_3:-60947295 | Msa1114200:CDS |
| TGAGTTCTCATACTCAAACA+TGG | 0.598383 | 7_3:-60947300 | Msa1114200:CDS |
| GATTTACAAAAGCAAGTGCA+AGG | 0.608962 | 7_3:-60946300 | Msa1114200:CDS |
| TTTGAGTATGAGAACTCAGG+TGG | 0.609689 | 7_3:+60947305 | None:intergenic |
| ATGTTTGAGTATGAGAACTC+AGG | 0.624831 | 7_3:+60947302 | None:intergenic |
| AGACACGTGAAATTGTTACA+GGG | 0.628066 | 7_3:+60946337 | None:intergenic |
| ATTACCGTTTGATCTTCACC+AGG | 0.645561 | 7_3:+60947044 | None:intergenic |
| CAGTTAACAAAGAATCGCAA+AGG | 0.655004 | 7_3:-60946224 | Msa1114200:CDS |
| GATCACGTTCACTAGCATTG+TGG | 0.694395 | 7_3:+60947114 | None:intergenic |
| TTGAGTATGAGAACTCAGGT+GGG | 0.707297 | 7_3:+60947306 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTTTTTTTCAAATAGAT+TGG | + | chr7_3:60946301-60946320 | None:intergenic | 10.0% |
| !! | TGGAATAAAATATATATTAA+TGG | + | chr7_3:60946596-60946615 | None:intergenic | 10.0% |
| !!! | ATTTTTTTTTTCAAATAGAT+TGG | + | chr7_3:60946301-60946320 | None:intergenic | 10.0% |
| !! | TGGAATAAAATATATATTAA+TGG | + | chr7_3:60946596-60946615 | None:intergenic | 10.0% |
| !! | CATACCAAATTAAATAAAAT+TGG | + | chr7_3:60945980-60945999 | None:intergenic | 15.0% |
| !!! | CAATTTTATTTAATTTGGTA+TGG | - | chr7_3:60945978-60945997 | Msa1114200:intron | 15.0% |
| !!! | AGATAAGCTATTTTTAAAAA+TGG | - | chr7_3:60946051-60946070 | Msa1114200:CDS | 15.0% |
| !! | CATACCAAATTAAATAAAAT+TGG | + | chr7_3:60945980-60945999 | None:intergenic | 15.0% |
| !!! | CAATTTTATTTAATTTGGTA+TGG | - | chr7_3:60945978-60945997 | Msa1114200:intron | 15.0% |
| !!! | AGATAAGCTATTTTTAAAAA+TGG | - | chr7_3:60946051-60946070 | Msa1114200:CDS | 15.0% |
| !! | CCAAATTAAATAAAATTGGA+AGG | + | chr7_3:60945976-60945995 | None:intergenic | 20.0% |
| !!! | CCTTCCAATTTTATTTAATT+TGG | - | chr7_3:60945973-60945992 | Msa1114200:intron | 20.0% |
| !!! | TAGATTGGTTAGTTTTTTTT+TGG | + | chr7_3:60946286-60946305 | None:intergenic | 20.0% |
| !!! | TAACCTACTTTAAGAAAAAA+GGG | - | chr7_3:60946464-60946483 | Msa1114200:intron | 20.0% |
| !! | TTGATGTGTTTAGAAAATAA+TGG | - | chr7_3:60946897-60946916 | Msa1114200:intron | 20.0% |
| !! | AAGCAGAAAAATAATCATTT+GGG | - | chr7_3:60947280-60947299 | Msa1114200:CDS | 20.0% |
| !! | CCAAATTAAATAAAATTGGA+AGG | + | chr7_3:60945976-60945995 | None:intergenic | 20.0% |
| !!! | CCTTCCAATTTTATTTAATT+TGG | - | chr7_3:60945973-60945992 | Msa1114200:intron | 20.0% |
| !!! | TAGATTGGTTAGTTTTTTTT+TGG | + | chr7_3:60946286-60946305 | None:intergenic | 20.0% |
| !!! | TAACCTACTTTAAGAAAAAA+GGG | - | chr7_3:60946464-60946483 | Msa1114200:intron | 20.0% |
| !! | TTGATGTGTTTAGAAAATAA+TGG | - | chr7_3:60946897-60946916 | Msa1114200:intron | 20.0% |
| !! | AAGCAGAAAAATAATCATTT+GGG | - | chr7_3:60947280-60947299 | Msa1114200:CDS | 20.0% |
| ! | CTTCTCTTTATGACTAATTA+AGG | + | chr7_3:60945737-60945756 | None:intergenic | 25.0% |
| !!! | AAGCTATTTTTAAAAATGGC+AGG | - | chr7_3:60946055-60946074 | Msa1114200:CDS | 25.0% |
| !!! | TTTAGCTTTATATAACTCCA+TGG | - | chr7_3:60946084-60946103 | Msa1114200:CDS | 25.0% |
| ! | ATGTGCAAAAAAATTAGTGA+TGG | - | chr7_3:60946371-60946390 | Msa1114200:intron | 25.0% |
| ! | ATAGCTAATCGTTCTTTAAA+AGG | - | chr7_3:60946419-60946438 | Msa1114200:intron | 25.0% |
| !! | GTAACCTACTTTAAGAAAAA+AGG | - | chr7_3:60946463-60946482 | Msa1114200:intron | 25.0% |
| ! | ACCCTAATTGTTTACTATTA+AGG | - | chr7_3:60947114-60947133 | Msa1114200:CDS | 25.0% |
| ! | CCCTTAATAGTAAACAATTA+GGG | + | chr7_3:60947118-60947137 | None:intergenic | 25.0% |
| ! | CCCTAATTGTTTACTATTAA+GGG | - | chr7_3:60947115-60947134 | Msa1114200:CDS | 25.0% |
| ! | TCCCTTAATAGTAAACAATT+AGG | + | chr7_3:60947119-60947138 | None:intergenic | 25.0% |
| !!! | ATTTATTTTGCAATGTTTGC+AGG | - | chr7_3:60947195-60947214 | Msa1114200:CDS | 25.0% |
| ! | GAAGCAGAAAAATAATCATT+TGG | - | chr7_3:60947279-60947298 | Msa1114200:CDS | 25.0% |
| ! | CTTCTCTTTATGACTAATTA+AGG | + | chr7_3:60945737-60945756 | None:intergenic | 25.0% |
| !!! | AAGCTATTTTTAAAAATGGC+AGG | - | chr7_3:60946055-60946074 | Msa1114200:CDS | 25.0% |
| !!! | TTTAGCTTTATATAACTCCA+TGG | - | chr7_3:60946084-60946103 | Msa1114200:CDS | 25.0% |
| ! | ATGTGCAAAAAAATTAGTGA+TGG | - | chr7_3:60946371-60946390 | Msa1114200:intron | 25.0% |
| ! | ATAGCTAATCGTTCTTTAAA+AGG | - | chr7_3:60946419-60946438 | Msa1114200:intron | 25.0% |
| !! | GTAACCTACTTTAAGAAAAA+AGG | - | chr7_3:60946463-60946482 | Msa1114200:intron | 25.0% |
| ! | ACCCTAATTGTTTACTATTA+AGG | - | chr7_3:60947114-60947133 | Msa1114200:CDS | 25.0% |
| ! | CCCTTAATAGTAAACAATTA+GGG | + | chr7_3:60947118-60947137 | None:intergenic | 25.0% |
| ! | CCCTAATTGTTTACTATTAA+GGG | - | chr7_3:60947115-60947134 | Msa1114200:CDS | 25.0% |
| ! | TCCCTTAATAGTAAACAATT+AGG | + | chr7_3:60947119-60947138 | None:intergenic | 25.0% |
| !!! | ATTTATTTTGCAATGTTTGC+AGG | - | chr7_3:60947195-60947214 | Msa1114200:CDS | 25.0% |
| ! | GAAGCAGAAAAATAATCATT+TGG | - | chr7_3:60947279-60947298 | Msa1114200:CDS | 25.0% |
| TTATGACTAATTAAGGACTC+TGG | + | chr7_3:60945730-60945749 | None:intergenic | 30.0% | |
| CTAGAGATAAGCATAATCAT+AGG | + | chr7_3:60946135-60946154 | None:intergenic | 30.0% | |
| CTATGATTATGCTTATCTCT+AGG | - | chr7_3:60946133-60946152 | Msa1114200:CDS | 30.0% | |
| !! | AAGAGTTTTGATCTGACTAT+TGG | - | chr7_3:60946184-60946203 | Msa1114200:CDS | 30.0% |
| CCAATAATTGATTAATCCAG+AGG | + | chr7_3:60946240-60946259 | None:intergenic | 30.0% | |
| CCTCTGGATTAATCAATTAT+TGG | - | chr7_3:60946237-60946256 | Msa1114200:CDS | 30.0% | |
| !!! | ACACCCTTTTTTCTTAAAGT+AGG | + | chr7_3:60946470-60946489 | None:intergenic | 30.0% |
| ! | CTGTTTGTTTCGTAATGTTT+TGG | - | chr7_3:60946518-60946537 | Msa1114200:intron | 30.0% |
| !!! | TTTTTTCTGCAACATCAACA+TGG | + | chr7_3:60946616-60946635 | None:intergenic | 30.0% |
| ACGTGTCTTAAAATACATAC+CGG | - | chr7_3:60946659-60946678 | Msa1114200:intron | 30.0% | |
| ACAAAAGCAGAATTGTAACT+TGG | + | chr7_3:60946792-60946811 | None:intergenic | 30.0% | |
| !! | TCTTCTTCTTCTAAAACCTT+TGG | - | chr7_3:60946936-60946955 | Msa1114200:intron | 30.0% |
| !! | CTTCTATAACTTGCATTTTC+AGG | - | chr7_3:60946968-60946987 | Msa1114200:intron | 30.0% |
| AAATAATCATTTGGGCACTA+TGG | - | chr7_3:60947288-60947307 | Msa1114200:CDS | 30.0% | |
| TTATGACTAATTAAGGACTC+TGG | + | chr7_3:60945730-60945749 | None:intergenic | 30.0% | |
| CTAGAGATAAGCATAATCAT+AGG | + | chr7_3:60946135-60946154 | None:intergenic | 30.0% | |
| CTATGATTATGCTTATCTCT+AGG | - | chr7_3:60946133-60946152 | Msa1114200:CDS | 30.0% | |
| !! | AAGAGTTTTGATCTGACTAT+TGG | - | chr7_3:60946184-60946203 | Msa1114200:CDS | 30.0% |
| CCAATAATTGATTAATCCAG+AGG | + | chr7_3:60946240-60946259 | None:intergenic | 30.0% | |
| CCTCTGGATTAATCAATTAT+TGG | - | chr7_3:60946237-60946256 | Msa1114200:CDS | 30.0% | |
| !!! | ACACCCTTTTTTCTTAAAGT+AGG | + | chr7_3:60946470-60946489 | None:intergenic | 30.0% |
| ! | CTGTTTGTTTCGTAATGTTT+TGG | - | chr7_3:60946518-60946537 | Msa1114200:intron | 30.0% |
| !!! | TTTTTTCTGCAACATCAACA+TGG | + | chr7_3:60946616-60946635 | None:intergenic | 30.0% |
| ACGTGTCTTAAAATACATAC+CGG | - | chr7_3:60946659-60946678 | Msa1114200:intron | 30.0% | |
| ACAAAAGCAGAATTGTAACT+TGG | + | chr7_3:60946792-60946811 | None:intergenic | 30.0% | |
| !! | TCTTCTTCTTCTAAAACCTT+TGG | - | chr7_3:60946936-60946955 | Msa1114200:intron | 30.0% |
| !! | CTTCTATAACTTGCATTTTC+AGG | - | chr7_3:60946968-60946987 | Msa1114200:intron | 30.0% |
| AAATAATCATTTGGGCACTA+TGG | - | chr7_3:60947288-60947307 | Msa1114200:CDS | 30.0% | |
| ATGTTTGAGTATGAGAACTC+AGG | + | chr7_3:60945682-60945701 | None:intergenic | 35.0% | |
| TGAGTTCTCATACTCAAACA+TGG | - | chr7_3:60945681-60945700 | Msa1114200:CDS | 35.0% | |
| GAGTTCTCATACTCAAACAT+GGG | - | chr7_3:60945682-60945701 | Msa1114200:CDS | 35.0% | |
| ! | GGTGAAGAGAATTGATGATA+AGG | + | chr7_3:60945787-60945806 | None:intergenic | 35.0% |
| TCATCAATTCTCTTCACCAA+AGG | - | chr7_3:60945789-60945808 | Msa1114200:intron | 35.0% | |
| TCAATCTCAACATGTTCCTT+TGG | + | chr7_3:60945808-60945827 | None:intergenic | 35.0% | |
| CTTCTTAGCCATAAGTTTAG+GGG | + | chr7_3:60945842-60945861 | None:intergenic | 35.0% | |
| GCTTCTTAGCCATAAGTTTA+GGG | + | chr7_3:60945843-60945862 | None:intergenic | 35.0% | |
| AGCTTCTTAGCCATAAGTTT+AGG | + | chr7_3:60945844-60945863 | None:intergenic | 35.0% | |
| GCTTTATATAACTCCATGGT+TGG | - | chr7_3:60946088-60946107 | Msa1114200:CDS | 35.0% | |
| ! | TAGGTCTGATGATGAAAGTT+TGG | - | chr7_3:60946152-60946171 | Msa1114200:CDS | 35.0% |
| AGACACGTGAAATTGTTACA+GGG | + | chr7_3:60946647-60946666 | None:intergenic | 35.0% | |
| AAGACACGTGAAATTGTTAC+AGG | + | chr7_3:60946648-60946667 | None:intergenic | 35.0% | |
| !! | TGCACTTGCTTTTGTAAATC+CGG | + | chr7_3:60946681-60946700 | None:intergenic | 35.0% |
| GATTTACAAAAGCAAGTGCA+AGG | - | chr7_3:60946681-60946700 | Msa1114200:intron | 35.0% | |
| CAGTTAACAAAGAATCGCAA+AGG | - | chr7_3:60946757-60946776 | Msa1114200:intron | 35.0% | |
| ! | CTTTTGTAGTTTCGACAAGT+AGG | - | chr7_3:60946805-60946824 | Msa1114200:intron | 35.0% |
| !! | TCTTCTTCTAAAACCTTTGG+AGG | - | chr7_3:60946939-60946958 | Msa1114200:intron | 35.0% |
| !! | CTTCTTCTAAAACCTTTGGA+GGG | - | chr7_3:60946940-60946959 | Msa1114200:intron | 35.0% |
| ! | TATTTTGCAATGTTTGCAGG+TGG | - | chr7_3:60947198-60947217 | Msa1114200:CDS | 35.0% |
| ATGTTTGAGTATGAGAACTC+AGG | + | chr7_3:60945682-60945701 | None:intergenic | 35.0% | |
| TGAGTTCTCATACTCAAACA+TGG | - | chr7_3:60945681-60945700 | Msa1114200:CDS | 35.0% | |
| GAGTTCTCATACTCAAACAT+GGG | - | chr7_3:60945682-60945701 | Msa1114200:CDS | 35.0% | |
| ! | GGTGAAGAGAATTGATGATA+AGG | + | chr7_3:60945787-60945806 | None:intergenic | 35.0% |
| TCATCAATTCTCTTCACCAA+AGG | - | chr7_3:60945789-60945808 | Msa1114200:intron | 35.0% | |
| TCAATCTCAACATGTTCCTT+TGG | + | chr7_3:60945808-60945827 | None:intergenic | 35.0% | |
| CTTCTTAGCCATAAGTTTAG+GGG | + | chr7_3:60945842-60945861 | None:intergenic | 35.0% | |
| GCTTCTTAGCCATAAGTTTA+GGG | + | chr7_3:60945843-60945862 | None:intergenic | 35.0% | |
| AGCTTCTTAGCCATAAGTTT+AGG | + | chr7_3:60945844-60945863 | None:intergenic | 35.0% | |
| GCTTTATATAACTCCATGGT+TGG | - | chr7_3:60946088-60946107 | Msa1114200:CDS | 35.0% | |
| ! | TAGGTCTGATGATGAAAGTT+TGG | - | chr7_3:60946152-60946171 | Msa1114200:CDS | 35.0% |
| AGACACGTGAAATTGTTACA+GGG | + | chr7_3:60946647-60946666 | None:intergenic | 35.0% | |
| AAGACACGTGAAATTGTTAC+AGG | + | chr7_3:60946648-60946667 | None:intergenic | 35.0% | |
| !! | TGCACTTGCTTTTGTAAATC+CGG | + | chr7_3:60946681-60946700 | None:intergenic | 35.0% |
| GATTTACAAAAGCAAGTGCA+AGG | - | chr7_3:60946681-60946700 | Msa1114200:intron | 35.0% | |
| CAGTTAACAAAGAATCGCAA+AGG | - | chr7_3:60946757-60946776 | Msa1114200:intron | 35.0% | |
| ! | CTTTTGTAGTTTCGACAAGT+AGG | - | chr7_3:60946805-60946824 | Msa1114200:intron | 35.0% |
| !! | TCTTCTTCTAAAACCTTTGG+AGG | - | chr7_3:60946939-60946958 | Msa1114200:intron | 35.0% |
| !! | CTTCTTCTAAAACCTTTGGA+GGG | - | chr7_3:60946940-60946959 | Msa1114200:intron | 35.0% |
| ! | TATTTTGCAATGTTTGCAGG+TGG | - | chr7_3:60947198-60947217 | Msa1114200:CDS | 35.0% |
| TTGAGTATGAGAACTCAGGT+GGG | + | chr7_3:60945678-60945697 | None:intergenic | 40.0% | |
| TTTGAGTATGAGAACTCAGG+TGG | + | chr7_3:60945679-60945698 | None:intergenic | 40.0% | |
| TCTCATACTCAAACATGGGA+TGG | - | chr7_3:60945686-60945705 | Msa1114200:CDS | 40.0% | |
| TCTTCCTGGTGAAGATCAAA+CGG | - | chr7_3:60945933-60945952 | Msa1114200:intron | 40.0% | |
| ATTACCGTTTGATCTTCACC+AGG | + | chr7_3:60945940-60945959 | None:intergenic | 40.0% | |
| TTTCATCATCAGACCAACCA+TGG | + | chr7_3:60946104-60946123 | None:intergenic | 40.0% | |
| CTCAGATAGAGGAATCTTGT+AGG | + | chr7_3:60946874-60946893 | None:intergenic | 40.0% | |
| CACATCAAGATCTCAGATAG+AGG | + | chr7_3:60946885-60946904 | None:intergenic | 40.0% | |
| TTGAGTATGAGAACTCAGGT+GGG | + | chr7_3:60945678-60945697 | None:intergenic | 40.0% | |
| TTTGAGTATGAGAACTCAGG+TGG | + | chr7_3:60945679-60945698 | None:intergenic | 40.0% | |
| TCTCATACTCAAACATGGGA+TGG | - | chr7_3:60945686-60945705 | Msa1114200:CDS | 40.0% | |
| TCTTCCTGGTGAAGATCAAA+CGG | - | chr7_3:60945933-60945952 | Msa1114200:intron | 40.0% | |
| ATTACCGTTTGATCTTCACC+AGG | + | chr7_3:60945940-60945959 | None:intergenic | 40.0% | |
| TTTCATCATCAGACCAACCA+TGG | + | chr7_3:60946104-60946123 | None:intergenic | 40.0% | |
| CTCAGATAGAGGAATCTTGT+AGG | + | chr7_3:60946874-60946893 | None:intergenic | 40.0% | |
| CACATCAAGATCTCAGATAG+AGG | + | chr7_3:60946885-60946904 | None:intergenic | 40.0% | |
| AAACATGGGATGGCTCTTAG+AGG | - | chr7_3:60945696-60945715 | Msa1114200:CDS | 45.0% | |
| GCCACAATCCCCTAAACTTA+TGG | - | chr7_3:60945831-60945850 | Msa1114200:intron | 45.0% | |
| GCCATAAGTTTAGGGGATTG+TGG | + | chr7_3:60945835-60945854 | None:intergenic | 45.0% | |
| GATCACGTTCACTAGCATTG+TGG | + | chr7_3:60945870-60945889 | None:intergenic | 45.0% | |
| TCACTTCGTTCACTTCTTCC+TGG | - | chr7_3:60945919-60945938 | Msa1114200:intron | 45.0% | |
| !! | CTTCTAAAACCTTTGGAGGG+AGG | - | chr7_3:60946943-60946962 | Msa1114200:intron | 45.0% |
| AAACATGGGATGGCTCTTAG+AGG | - | chr7_3:60945696-60945715 | Msa1114200:CDS | 45.0% | |
| GCCACAATCCCCTAAACTTA+TGG | - | chr7_3:60945831-60945850 | Msa1114200:intron | 45.0% | |
| GCCATAAGTTTAGGGGATTG+TGG | + | chr7_3:60945835-60945854 | None:intergenic | 45.0% | |
| GATCACGTTCACTAGCATTG+TGG | + | chr7_3:60945870-60945889 | None:intergenic | 45.0% | |
| TCACTTCGTTCACTTCTTCC+TGG | - | chr7_3:60945919-60945938 | Msa1114200:intron | 45.0% | |
| !! | CTTCTAAAACCTTTGGAGGG+AGG | - | chr7_3:60946943-60946962 | Msa1114200:intron | 45.0% |
| ATAGAAGAGCCTCCCTCCAA+AGG | + | chr7_3:60946955-60946974 | None:intergenic | 50.0% | |
| ATAGAAGAGCCTCCCTCCAA+AGG | + | chr7_3:60946955-60946974 | None:intergenic | 50.0% | |
| GGGATGGCTCTTAGAGGAGT+TGG | - | chr7_3:60945702-60945721 | Msa1114200:CDS | 55.0% | |
| CTATTGGACCCTCGCTAGAG+TGG | - | chr7_3:60946200-60946219 | Msa1114200:CDS | 55.0% | |
| GGGATGGCTCTTAGAGGAGT+TGG | - | chr7_3:60945702-60945721 | Msa1114200:CDS | 55.0% | |
| CTATTGGACCCTCGCTAGAG+TGG | - | chr7_3:60946200-60946219 | Msa1114200:CDS | 55.0% | |
| TGGACCCTCGCTAGAGTGGA+TGG | - | chr7_3:60946204-60946223 | Msa1114200:CDS | 60.0% | |
| ACCCTCGCTAGAGTGGATGG+TGG | - | chr7_3:60946207-60946226 | Msa1114200:CDS | 60.0% | |
| CCCACCATCCACTCTAGCGA+GGG | + | chr7_3:60946211-60946230 | None:intergenic | 60.0% | |
| CCCTCGCTAGAGTGGATGGT+GGG | - | chr7_3:60946208-60946227 | Msa1114200:CDS | 60.0% | |
| CCTCGCTAGAGTGGATGGTG+GGG | - | chr7_3:60946209-60946228 | Msa1114200:CDS | 60.0% | |
| !! | GCTAGAGTGGATGGTGGGGT+CGG | - | chr7_3:60946213-60946232 | Msa1114200:CDS | 60.0% |
| TGGACCCTCGCTAGAGTGGA+TGG | - | chr7_3:60946204-60946223 | Msa1114200:CDS | 60.0% | |
| ACCCTCGCTAGAGTGGATGG+TGG | - | chr7_3:60946207-60946226 | Msa1114200:CDS | 60.0% | |
| CCCACCATCCACTCTAGCGA+GGG | + | chr7_3:60946211-60946230 | None:intergenic | 60.0% | |
| CCCTCGCTAGAGTGGATGGT+GGG | - | chr7_3:60946208-60946227 | Msa1114200:CDS | 60.0% | |
| CCTCGCTAGAGTGGATGGTG+GGG | - | chr7_3:60946209-60946228 | Msa1114200:CDS | 60.0% | |
| !! | GCTAGAGTGGATGGTGGGGT+CGG | - | chr7_3:60946213-60946232 | Msa1114200:CDS | 60.0% |
| CCCCACCATCCACTCTAGCG+AGG | + | chr7_3:60946212-60946231 | None:intergenic | 65.0% | |
| CCCCACCATCCACTCTAGCG+AGG | + | chr7_3:60946212-60946231 | None:intergenic | 65.0% | |
| !! | GGATGGTGGGGTCGGTCCTC+TGG | - | chr7_3:60946221-60946240 | Msa1114200:CDS | 70.0% |
| !! | GGATGGTGGGGTCGGTCCTC+TGG | - | chr7_3:60946221-60946240 | Msa1114200:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_3 | gene | 60945661 | 60947342 | 60945661 | ID=Msa1114200;Name=Msa1114200 |
| chr7_3 | mRNA | 60945661 | 60947342 | 60945661 | ID=Msa1114200-mRNA-1;Parent=Msa1114200;Name=Msa1114200-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0|0|0|1|1|1|3|0|259 |
| chr7_3 | exon | 60947049 | 60947342 | 60947049 | ID=Msa1114200-mRNA-1:exon:13757;Parent=Msa1114200-mRNA-1 |
| chr7_3 | exon | 60946014 | 60946373 | 60946014 | ID=Msa1114200-mRNA-1:exon:13756;Parent=Msa1114200-mRNA-1 |
| chr7_3 | exon | 60945661 | 60945786 | 60945661 | ID=Msa1114200-mRNA-1:exon:13755;Parent=Msa1114200-mRNA-1 |
| chr7_3 | CDS | 60947049 | 60947342 | 60947049 | ID=Msa1114200-mRNA-1:cds;Parent=Msa1114200-mRNA-1 |
| chr7_3 | CDS | 60946014 | 60946373 | 60946014 | ID=Msa1114200-mRNA-1:cds;Parent=Msa1114200-mRNA-1 |
| chr7_3 | CDS | 60945661 | 60945786 | 60945661 | ID=Msa1114200-mRNA-1:cds;Parent=Msa1114200-mRNA-1 |
| Gene Sequence |
| Protein sequence |
