Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1114290 | XP_013449572.3 | 77.119 | 236 | 34 | 1 | 38 | 253 | 90 | 325 | 2.67e-123 | 363 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1114290 | sp|Q4V3D9|SSL10_ARATH | 68.485 | 165 | 52 | 0 | 38 | 202 | 99 | 263 | 5.91e-77 | 240 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1114290 | A0A072UCL7 | 77.119 | 236 | 34 | 1 | 38 | 253 | 90 | 325 | 1.28e-123 | 363 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0678240 | Msa1114290 | 0.816346 | 5.798668e-52 | -8.615850e-47 |
| Msa1033670 | Msa1114290 | 0.816231 | 6.151286e-52 | -8.615850e-47 |
| Msa1073500 | Msa1114290 | 0.830733 | 2.487230e-55 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1114290 | MtrunA17_Chr7g0256561 | 77.119 | 236 | 34 | 1 | 38 | 253 | 100 | 335 | 4.40e-127 | 363 |
| Msa1114290 | MtrunA17_Chr5g0443561 | 72.881 | 236 | 41 | 2 | 38 | 253 | 91 | 323 | 5.65e-114 | 330 |
| Msa1114290 | MtrunA17_Chr7g0256571 | 62.409 | 274 | 45 | 3 | 38 | 253 | 96 | 369 | 2.21e-110 | 322 |
| Msa1114290 | MtrunA17_Chr7g0256581 | 59.854 | 274 | 52 | 4 | 38 | 253 | 96 | 369 | 1.48e-101 | 300 |
| Msa1114290 | MtrunA17_Chr2g0329531 | 58.084 | 167 | 69 | 1 | 36 | 202 | 131 | 296 | 3.03e-61 | 198 |
| Msa1114290 | MtrunA17_Chr2g0322241 | 62.179 | 156 | 58 | 1 | 47 | 202 | 130 | 284 | 5.14e-61 | 197 |
| Msa1114290 | MtrunA17_Chr7g0256591 | 43.852 | 244 | 112 | 7 | 16 | 249 | 82 | 310 | 8.65e-58 | 189 |
| Msa1114290 | MtrunA17_Chr4g0025341 | 58.333 | 156 | 64 | 1 | 49 | 204 | 128 | 282 | 2.43e-57 | 187 |
| Msa1114290 | MtrunA17_Chr7g0256601 | 46.544 | 217 | 96 | 5 | 39 | 249 | 139 | 341 | 4.16e-57 | 187 |
| Msa1114290 | MtrunA17_Chr4g0062001 | 36.667 | 240 | 116 | 1 | 48 | 251 | 95 | 334 | 4.64e-46 | 157 |
| Msa1114290 | MtrunA17_Chr4g0062021 | 37.288 | 236 | 112 | 2 | 48 | 247 | 107 | 342 | 1.90e-45 | 155 |
| Msa1114290 | MtrunA17_Chr8g0376581 | 36.596 | 235 | 115 | 2 | 52 | 252 | 97 | 331 | 2.30e-45 | 155 |
| Msa1114290 | MtrunA17_Chr4g0062031 | 36.910 | 233 | 120 | 2 | 47 | 252 | 93 | 325 | 2.96e-44 | 152 |
| Msa1114290 | MtrunA17_Chr2g0307721 | 36.207 | 232 | 113 | 2 | 47 | 243 | 102 | 333 | 7.37e-37 | 137 |
| Msa1114290 | MtrunA17_Chr2g0307721 | 35.565 | 239 | 119 | 2 | 47 | 250 | 554 | 792 | 1.77e-36 | 136 |
| Msa1114290 | MtrunA17_Chr2g0307721 | 46.835 | 79 | 42 | 0 | 47 | 125 | 343 | 421 | 1.58e-15 | 75.9 |
| Msa1114290 | MtrunA17_Chr8g0370761 | 40.120 | 167 | 90 | 6 | 53 | 214 | 118 | 279 | 2.88e-27 | 108 |
| Msa1114290 | MtrunA17_Chr8g0370791 | 36.957 | 184 | 110 | 4 | 32 | 212 | 97 | 277 | 3.06e-27 | 107 |
| Msa1114290 | MtrunA17_Chr4g0020271 | 32.967 | 182 | 86 | 1 | 100 | 245 | 2 | 183 | 1.83e-26 | 102 |
| Msa1114290 | MtrunA17_Chr8g0370771 | 34.646 | 127 | 79 | 2 | 89 | 212 | 17 | 142 | 3.87e-19 | 83.6 |
| Msa1114290 | MtrunA17_Chr2g0300841 | 37.255 | 153 | 90 | 4 | 63 | 211 | 112 | 262 | 3.26e-18 | 82.8 |
| Msa1114290 | MtrunA17_Chr4g0062051 | 47.436 | 78 | 41 | 0 | 48 | 125 | 98 | 175 | 2.09e-17 | 77.8 |
| Msa1114290 | MtrunA17_Chr2g0300851 | 34.731 | 167 | 102 | 4 | 49 | 211 | 91 | 254 | 4.58e-16 | 76.6 |
| Msa1114290 | MtrunA17_Chr4g0061871 | 38.298 | 94 | 55 | 1 | 133 | 223 | 26 | 119 | 8.14e-15 | 69.3 |
| Msa1114290 | MtrunA17_Chr2g0300861 | 31.953 | 169 | 108 | 3 | 49 | 213 | 110 | 275 | 8.91e-15 | 73.2 |
| Msa1114290 | MtrunA17_Chr8g0370801 | 38.889 | 90 | 54 | 1 | 89 | 178 | 20 | 108 | 3.93e-13 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1114290 | AT3G57030.1 | 68.485 | 165 | 52 | 0 | 38 | 202 | 99 | 263 | 6.01e-78 | 240 |
| Msa1114290 | AT1G08470.1 | 44.906 | 265 | 85 | 3 | 49 | 253 | 126 | 389 | 1.22e-67 | 214 |
| Msa1114290 | AT3G59530.3 | 52.486 | 181 | 82 | 2 | 36 | 213 | 133 | 312 | 6.69e-59 | 192 |
| Msa1114290 | AT3G59530.2 | 52.486 | 181 | 82 | 2 | 36 | 213 | 133 | 312 | 6.69e-59 | 192 |
| Msa1114290 | AT3G59530.1 | 52.486 | 181 | 82 | 2 | 36 | 213 | 133 | 312 | 6.69e-59 | 192 |
| Msa1114290 | AT2G41290.1 | 43.382 | 272 | 86 | 6 | 49 | 253 | 106 | 376 | 8.06e-59 | 191 |
| Msa1114290 | AT5G22020.3 | 59.740 | 154 | 61 | 1 | 49 | 202 | 132 | 284 | 1.22e-56 | 186 |
| Msa1114290 | AT5G22020.1 | 59.740 | 154 | 61 | 1 | 49 | 202 | 132 | 284 | 1.22e-56 | 186 |
| Msa1114290 | AT5G22020.2 | 59.740 | 154 | 61 | 1 | 49 | 202 | 132 | 284 | 1.22e-56 | 186 |
| Msa1114290 | AT1G74010.1 | 38.889 | 234 | 109 | 3 | 52 | 253 | 94 | 325 | 5.24e-48 | 162 |
| Msa1114290 | AT2G41300.1 | 37.500 | 264 | 105 | 3 | 47 | 250 | 127 | 390 | 9.17e-48 | 163 |
| Msa1114290 | AT1G74020.1 | 38.462 | 234 | 110 | 3 | 52 | 253 | 96 | 327 | 9.23e-48 | 161 |
| Msa1114290 | AT3G57020.1 | 48.810 | 168 | 83 | 1 | 47 | 211 | 102 | 269 | 4.11e-46 | 158 |
| Msa1114290 | AT3G57010.1 | 49.020 | 153 | 78 | 0 | 52 | 204 | 108 | 260 | 2.50e-44 | 153 |
| Msa1114290 | AT3G57020.2 | 49.068 | 161 | 79 | 1 | 54 | 211 | 95 | 255 | 7.45e-44 | 152 |
| Msa1114290 | AT1G74000.1 | 36.752 | 234 | 114 | 3 | 52 | 253 | 98 | 329 | 4.27e-43 | 149 |
| Msa1114290 | AT3G51440.1 | 36.471 | 170 | 99 | 4 | 47 | 212 | 107 | 271 | 1.21e-20 | 90.1 |
| Msa1114290 | AT3G51430.1 | 34.375 | 160 | 102 | 3 | 53 | 211 | 113 | 270 | 4.59e-19 | 85.9 |
| Msa1114290 | AT3G51430.2 | 34.375 | 160 | 102 | 3 | 53 | 211 | 113 | 270 | 5.50e-19 | 85.5 |
| Msa1114290 | AT3G51420.1 | 31.429 | 175 | 112 | 4 | 53 | 221 | 113 | 285 | 4.61e-18 | 82.8 |
| Msa1114290 | AT3G51450.1 | 33.125 | 160 | 104 | 3 | 53 | 211 | 113 | 270 | 5.92e-18 | 82.4 |
Find 71 sgRNAs with CRISPR-Local
Find 294 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CACTTCACTGATGTTCTTCA+TGG | 0.198711 | 7_3:+61080204 | None:intergenic |
| TATATTGGTGTTTATAGTTT+AGG | 0.238782 | 7_3:-61080136 | Msa1114290:CDS |
| CTCAATGTAGTGGGACCTAC+TGG | 0.241265 | 7_3:-61081299 | Msa1114290:CDS |
| AATATTCTTGTACTTCTTAG+TGG | 0.314755 | 7_3:-61080555 | Msa1114290:CDS |
| AGGGAAAATATTAGAAATCT+TGG | 0.328667 | 7_3:-61080245 | Msa1114290:CDS |
| TTGCTTAAAGCAACACCATT+AGG | 0.331103 | 7_3:+61080456 | None:intergenic |
| GTGGGAGGCCACTAGGACTA+AGG | 0.337333 | 7_3:-61081370 | Msa1114290:CDS |
| ACTGCAGAATTCTTCGGCTT+TGG | 0.342556 | 7_3:-61080398 | Msa1114290:CDS |
| TATTAGAAATCTTGGGAGAT+TGG | 0.345041 | 7_3:-61080237 | Msa1114290:CDS |
| AAACTATAAACACCAATATA+AGG | 0.351153 | 7_3:+61080139 | None:intergenic |
| GTGTTGACTTTGCCAGCTTT+TGG | 0.365351 | 7_3:+61080366 | None:intergenic |
| CTTCTTAGTGGAGACGCAAC+TGG | 0.372850 | 7_3:-61080543 | Msa1114290:CDS |
| GCTTGGTCGCCGCCGATGGA+TGG | 0.400376 | 7_3:-61085219 | Msa1114290:CDS |
| AAGAGAGAAATGGAAAACTT+TGG | 0.411409 | 7_3:-61080180 | Msa1114290:CDS |
| ATTCTTCGGCTTTGGCTTCG+TGG | 0.418524 | 7_3:-61080390 | Msa1114290:CDS |
| TCAATGTAGTGGGACCTACT+GGG | 0.421424 | 7_3:-61081298 | Msa1114290:CDS |
| CTTTCACTTCACCAATGACT+TGG | 0.432489 | 7_3:-61081234 | Msa1114290:CDS |
| CCTCGAACTGCAGAATTCTT+CGG | 0.438961 | 7_3:-61080404 | Msa1114290:CDS |
| CCAGAGTTGGAGCATATTTG+TGG | 0.445690 | 7_3:-61081389 | Msa1114290:CDS |
| GGTGTTGCTTTAAGCAAAGA+TGG | 0.456261 | 7_3:-61080450 | Msa1114290:CDS |
| CTTGGTCGCCGCCGATGGAT+GGG | 0.463021 | 7_3:-61085218 | Msa1114290:CDS |
| TTCACTGATATCCAAGTCAT+TGG | 0.463204 | 7_3:+61081223 | None:intergenic |
| TGGCTTCGTGGACCAAAAGC+TGG | 0.463403 | 7_3:-61080378 | Msa1114290:CDS |
| AGTGAAGTGGAAGAGAGAAA+TGG | 0.469053 | 7_3:-61080190 | Msa1114290:CDS |
| GGGAAAATATTAGAAATCTT+GGG | 0.469300 | 7_3:-61080244 | Msa1114290:CDS |
| TATATTGCTGATGCTTACCT+TGG | 0.473507 | 7_3:-61081323 | Msa1114290:CDS |
| TTGGTCGCCGCCGATGGATG+GGG | 0.474116 | 7_3:-61085217 | Msa1114290:CDS |
| CATATTTGTGGGAGGCCACT+AGG | 0.476270 | 7_3:-61081377 | Msa1114290:CDS |
| CCACAAATATGCTCCAACTC+TGG | 0.480733 | 7_3:+61081389 | None:intergenic |
| CCGAAGAATTCTGCAGTTCG+AGG | 0.480808 | 7_3:+61080404 | None:intergenic |
| TCAGAGATGGCTGCGGCCGA+TGG | 0.484118 | 7_3:-61085270 | Msa1114290:CDS |
| GCTATAAAGCTGAGTGGTGA+AGG | 0.488363 | 7_3:-61080265 | Msa1114290:CDS |
| CAAGTCATTGGTGAAGTGAA+AGG | 0.495058 | 7_3:+61081235 | None:intergenic |
| GTAGTGTGCAAAAGTGTTGT+TGG | 0.495103 | 7_3:-61085295 | Msa1114290:CDS |
| AGATGCTTGGTCGCCGCCGA+TGG | 0.496481 | 7_3:-61085223 | Msa1114290:CDS |
| TGCTCCAACTCTGGTGCGAA+CGG | 0.496769 | 7_3:+61081398 | None:intergenic |
| TCAGTGGAAATGCCTTATAT+TGG | 0.502261 | 7_3:-61080151 | Msa1114290:CDS |
| AAAACTTTGGATTGCATCAG+TGG | 0.505405 | 7_3:-61080167 | Msa1114290:CDS |
| AGATGGCTGCGGCCGATGGG+TGG | 0.508091 | 7_3:-61085266 | Msa1114290:CDS |
| CAGAGATGGCTGCGGCCGAT+GGG | 0.514806 | 7_3:-61085269 | Msa1114290:CDS |
| CAATGTAGTGGGACCTACTG+GGG | 0.524671 | 7_3:-61081297 | Msa1114290:CDS |
| GCGTCCGTTCGCACCAGAGT+TGG | 0.525040 | 7_3:-61081402 | Msa1114290:CDS |
| GAAGTGAAGGTCTTGTTAAG+AGG | 0.528733 | 7_3:-61080489 | Msa1114290:CDS |
| AAGTCATTGGTGAAGTGAAA+GGG | 0.530724 | 7_3:+61081236 | None:intergenic |
| CAGAGTTGGAGCATATTTGT+GGG | 0.532278 | 7_3:-61081388 | Msa1114290:CDS |
| AGCCACTCAACTAGCAATAG+AGG | 0.532824 | 7_3:-61081270 | Msa1114290:CDS |
| TACCTTGGCCTCAATGTAGT+GGG | 0.537777 | 7_3:-61081308 | Msa1114290:CDS |
| AGCCTCTATTGCTAGTTGAG+TGG | 0.552647 | 7_3:+61081268 | None:intergenic |
| TTCTTAGTGGAGACGCAACT+GGG | 0.559170 | 7_3:-61080542 | Msa1114290:CDS |
| TTATCAAACCTTAGTCCTAG+TGG | 0.561618 | 7_3:+61081362 | None:intergenic |
| GTCCCACTACATTGAGGCCA+AGG | 0.562852 | 7_3:+61081306 | None:intergenic |
| CATGAAGAACATCAGTGAAG+TGG | 0.569248 | 7_3:-61080203 | Msa1114290:CDS |
| GAAATCTTGGGAGATTGGCA+AGG | 0.571629 | 7_3:-61080232 | Msa1114290:CDS |
| TAAGTCAACAAAAGAAGTGA+AGG | 0.571883 | 7_3:-61080502 | Msa1114290:CDS |
| GGTGGAGTGTGAAGAGGAGA+TGG | 0.575913 | 7_3:-61085248 | Msa1114290:CDS |
| CCGATGGGTGGAGTGTGAAG+AGG | 0.583538 | 7_3:-61085254 | Msa1114290:CDS |
| CAAGCACAGTCTATCAGAGA+AGG | 0.594605 | 7_3:-61081172 | Msa1114290:intron |
| TGGTCGCCGCCGATGGATGG+GGG | 0.598864 | 7_3:-61085216 | Msa1114290:CDS |
| TTACCTTGGCCTCAATGTAG+TGG | 0.599466 | 7_3:-61081309 | Msa1114290:CDS |
| AATGTAGTGGGACCTACTGG+GGG | 0.601063 | 7_3:-61081296 | Msa1114290:CDS |
| AAATCTTGGGAGATTGGCAA+GGG | 0.602246 | 7_3:-61080231 | Msa1114290:CDS |
| AGAGGAGATGGTGAGATGCT+TGG | 0.609134 | 7_3:-61085236 | Msa1114290:CDS |
| CAGTAGGTCCCACTACATTG+AGG | 0.626504 | 7_3:+61081300 | None:intergenic |
| CTATAAAGCTGAGTGGTGAA+GGG | 0.627218 | 7_3:-61080264 | Msa1114290:CDS |
| CAACTAGCAATAGAGGCTGA+AGG | 0.636112 | 7_3:-61081263 | Msa1114290:CDS |
| CCTCTTCACACTCCACCCAT+CGG | 0.645181 | 7_3:+61085254 | Msa1114300:CDS |
| AGTGTTGTTGGAATCAGAGA+TGG | 0.654556 | 7_3:-61085283 | Msa1114290:CDS |
| AGTTGGAGCATATTTGTGGG+AGG | 0.657804 | 7_3:-61081385 | Msa1114290:CDS |
| TTGGATATCAGTGAAGATGA+AGG | 0.668380 | 7_3:-61081215 | Msa1114290:CDS |
| GTTGGAATCAGAGATGGCTG+CGG | 0.673551 | 7_3:-61085277 | Msa1114290:CDS |
| TCAGCAGCTATAAAGCTGAG+TGG | 0.731970 | 7_3:-61080271 | Msa1114290:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTGAAATATTTATTCATTT+GGG | + | chr7_3:61080622-61080641 | None:intergenic | 10.0% |
| !!! | TTTTGAAATATTTATTCATT+TGG | + | chr7_3:61080623-61080642 | None:intergenic | 10.0% |
| !!! | AATTTTATAATAAATAACCA+GGG | + | chr7_3:61081393-61081412 | None:intergenic | 10.0% |
| !!! | AAATTTTATAATAAATAACC+AGG | + | chr7_3:61081394-61081413 | None:intergenic | 10.0% |
| !!! | AGTTTGAAATTTTTTTAAAT+GGG | + | chr7_3:61081886-61081905 | Msa1114300:intron | 10.0% |
| !! | AAATTTACTCATATTTAATA+CGG | + | chr7_3:61083401-61083420 | Msa1114300:intron | 10.0% |
| !! | CATGTATAAATTAAAAAAAT+AGG | - | chr7_3:61083487-61083506 | Msa1114290:intron | 10.0% |
| !! | TAATATATAAGTAGAAATAT+AGG | - | chr7_3:61083578-61083597 | Msa1114290:intron | 10.0% |
| !! | AAAAAAAAAGAAAAAGAAAA+AGG | - | chr7_3:61083681-61083700 | Msa1114290:intron | 10.0% |
| !! | AAAAAAAAGAAAAAGAAAAA+GGG | - | chr7_3:61083682-61083701 | Msa1114290:intron | 10.0% |
| !!! | TTCAACATATATATTTTTAA+GGG | - | chr7_3:61084417-61084436 | Msa1114290:intron | 10.0% |
| !! | TTGAAATATTTATTCATTTG+GGG | + | chr7_3:61080621-61080640 | None:intergenic | 15.0% |
| !! | TTCTATCAATAAAAATTCAT+TGG | - | chr7_3:61080664-61080683 | Msa1114290:intron | 15.0% |
| !!! | TAAATGTAGAAACTTAATTT+TGG | - | chr7_3:61081186-61081205 | Msa1114290:CDS | 15.0% |
| !!! | TGTTTGATATTTTGTATATT+TGG | + | chr7_3:61081347-61081366 | None:intergenic | 15.0% |
| !!! | GAAATTTTCTAAATTTAACA+TGG | + | chr7_3:61081794-61081813 | Msa1114300:intron | 15.0% |
| !!! | CAGTTTGAAATTTTTTTAAA+TGG | + | chr7_3:61081887-61081906 | Msa1114300:intron | 15.0% |
| !! | TTGCAATTTAAAAATTTGAT+GGG | + | chr7_3:61081942-61081961 | Msa1114300:intron | 15.0% |
| !! | TTTGCAATTTAAAAATTTGA+TGG | + | chr7_3:61081943-61081962 | Msa1114300:intron | 15.0% |
| !!! | CTTTTCTAAATATTTTTGTT+CGG | + | chr7_3:61082122-61082141 | Msa1114300:intron | 15.0% |
| !!! | TCTTAATATATATTTTGTTG+TGG | + | chr7_3:61082514-61082533 | Msa1114300:intron | 15.0% |
| !! | TAAGTAGAATATATTGAATT+GGG | - | chr7_3:61082616-61082635 | Msa1114290:intron | 15.0% |
| !! | AATAAAATTATACAATGAAC+CGG | - | chr7_3:61083643-61083662 | Msa1114290:intron | 15.0% |
| !! | AAAAAAAGAAAAAGAAAAAG+GGG | - | chr7_3:61083683-61083702 | Msa1114290:intron | 15.0% |
| !!! | AATTGCTATTTTTTTTTATG+AGG | - | chr7_3:61083880-61083899 | Msa1114290:intron | 15.0% |
| !!! | GATTAGTTATATGATTTTAA+AGG | - | chr7_3:61083991-61084010 | Msa1114290:intron | 15.0% |
| !!! | CTTCAACATATATATTTTTA+AGG | - | chr7_3:61084416-61084435 | Msa1114290:intron | 15.0% |
| !!! | AATCAAAAACTAAATTTGCT+AGG | - | chr7_3:61080824-61080843 | Msa1114290:intron | 20.0% |
| !! | ACATTACACACAAAAAATAT+AGG | - | chr7_3:61080949-61080968 | Msa1114290:intron | 20.0% |
| !!! | AGACATTATAGATTTTGTTT+AGG | + | chr7_3:61081107-61081126 | None:intergenic | 20.0% |
| !! | TCTAATGATCAAACATATAA+GGG | - | chr7_3:61081124-61081143 | Msa1114290:intron | 20.0% |
| !! | ACAAGTTAAGAATCTAAAAA+AGG | + | chr7_3:61081280-61081299 | None:intergenic | 20.0% |
| !!! | TGATATTTTGTATATTTGGT+TGG | + | chr7_3:61081343-61081362 | None:intergenic | 20.0% |
| !! | ATATGTCATGATATTAGAAT+CGG | - | chr7_3:61081525-61081544 | Msa1114290:intron | 20.0% |
| !! | CGAAATTTGAAAATTATAGA+AGG | + | chr7_3:61081853-61081872 | Msa1114300:intron | 20.0% |
| !!! | CGCTTTTGATAAATTTATAA+GGG | + | chr7_3:61081911-61081930 | Msa1114300:intron | 20.0% |
| !! | TGCAATTTAAAAATTTGATG+GGG | + | chr7_3:61081941-61081960 | Msa1114300:intron | 20.0% |
| !! | GAAAATTTCAAGAAATTTGA+GGG | + | chr7_3:61082000-61082019 | Msa1114300:intron | 20.0% |
| !! | TGAAAATTTCAAGAAATTTG+AGG | + | chr7_3:61082001-61082020 | Msa1114300:intron | 20.0% |
| !!! | TGCTTTTCAATTTTCAAATT+TGG | - | chr7_3:61082035-61082054 | Msa1114290:intron | 20.0% |
| !! | AAACACAATCTAAAAAGTTA+GGG | - | chr7_3:61082213-61082232 | Msa1114290:intron | 20.0% |
| !! | GTAAGTAGAATATATTGAAT+TGG | - | chr7_3:61082615-61082634 | Msa1114290:intron | 20.0% |
| !!! | GACAGTATTTTTTTTACAAA+TGG | - | chr7_3:61082729-61082748 | Msa1114290:intron | 20.0% |
| !!! | ATGTTTTATAAGCTGTTTTT+AGG | + | chr7_3:61082828-61082847 | Msa1114300:intron | 20.0% |
| !! | CTTAAATTAGTCAATCTAAA+CGG | - | chr7_3:61082903-61082922 | Msa1114290:intron | 20.0% |
| !! | TTAAATTAGTCAATCTAAAC+GGG | - | chr7_3:61082904-61082923 | Msa1114290:intron | 20.0% |
| !!! | TTTAGTTCATTTTCAACAAA+TGG | + | chr7_3:61083186-61083205 | Msa1114300:intron | 20.0% |
| !! | TTAACTTATATATTTACGAG+AGG | + | chr7_3:61083457-61083476 | Msa1114300:intron | 20.0% |
| !! | AAAAAAGAAAAAGAAAAAGG+GGG | - | chr7_3:61083684-61083703 | Msa1114290:intron | 20.0% |
| !! | GAAAATGCAAATATAAGTAT+GGG | + | chr7_3:61083956-61083975 | Msa1114300:intron | 20.0% |
| !! | AGAAAATGCAAATATAAGTA+TGG | + | chr7_3:61083957-61083976 | Msa1114300:intron | 20.0% |
| !! | AATAGAGTTAATTGTAGAAA+AGG | + | chr7_3:61084305-61084324 | Msa1114300:intron | 20.0% |
| !!! | TATATTTTTAAGGGTATGAT+TGG | - | chr7_3:61084426-61084445 | Msa1114290:intron | 20.0% |
| !!! | ATATTTTTAAGGGTATGATT+GGG | - | chr7_3:61084427-61084446 | Msa1114290:intron | 20.0% |
| !! | GTACTACTAACAATATATAT+TGG | - | chr7_3:61084499-61084518 | Msa1114290:intron | 20.0% |
| !! | CTAAAAATTTGTATTTCACA+AGG | + | chr7_3:61084565-61084584 | Msa1114300:intron | 20.0% |
| !!! | TTTAGTTTCCTTAAATTAGA+CGG | - | chr7_3:61084580-61084599 | Msa1114290:intron | 20.0% |
| !!! | TCTTTTTATATGGCATATTA+TGG | + | chr7_3:61084804-61084823 | Msa1114300:intron | 20.0% |
| !! | AATATAAGGAGAAATTCAAA+TGG | - | chr7_3:61085111-61085130 | Msa1114290:intron | 20.0% |
| !! | ATATAAGGAGAAATTCAAAT+GGG | - | chr7_3:61085112-61085131 | Msa1114290:intron | 20.0% |
| !! | AAACTATAAACACCAATATA+AGG | + | chr7_3:61085291-61085310 | Msa1114300:CDS | 20.0% |
| !!! | TATATTGGTGTTTATAGTTT+AGG | - | chr7_3:61085291-61085310 | Msa1114290:CDS | 20.0% |
| ! | TTTGCTAGGATTAGATATAA+AGG | - | chr7_3:61080441-61080460 | Msa1114290:CDS | 25.0% |
| !! | CAATTCAGATATTTTTCGTA+AGG | - | chr7_3:61080776-61080795 | Msa1114290:intron | 25.0% |
| ! | ACAGTAGTTTAACACAAAAA+TGG | - | chr7_3:61080868-61080887 | Msa1114290:intron | 25.0% |
| !! | CAGATTTTTAACACAAAAAC+AGG | - | chr7_3:61080896-61080915 | Msa1114290:intron | 25.0% |
| ! | GTCTAATGATCAAACATATA+AGG | - | chr7_3:61081123-61081142 | Msa1114290:intron | 25.0% |
| !! | ACTTGATGTTAAACTTTTCT+TGG | + | chr7_3:61081439-61081458 | None:intergenic | 25.0% |
| ! | ATGATTTAGTACTTCAACTA+TGG | + | chr7_3:61081551-61081570 | Msa1114300:intron | 25.0% |
| !! | GCGCTTTTGATAAATTTATA+AGG | + | chr7_3:61081912-61081931 | Msa1114300:intron | 25.0% |
| ! | AATTTGCAAAACTATCGAAA+AGG | - | chr7_3:61082067-61082086 | Msa1114290:intron | 25.0% |
| ! | ATTTGCAAAACTATCGAAAA+GGG | - | chr7_3:61082068-61082087 | Msa1114290:intron | 25.0% |
| !! | CTAACTTTTTAGATTGTGTT+TGG | + | chr7_3:61082214-61082233 | Msa1114300:intron | 25.0% |
| ! | CAAACACAATCTAAAAAGTT+AGG | - | chr7_3:61082212-61082231 | Msa1114290:intron | 25.0% |
| ! | TGAAAACTTAAACACAAAAG+TGG | + | chr7_3:61082331-61082350 | Msa1114300:intron | 25.0% |
| ! | TACCTAATAAAAGAGATATG+AGG | - | chr7_3:61082375-61082394 | Msa1114290:intron | 25.0% |
| ! | TGTATTGAAAAGTAGTGAAA+TGG | - | chr7_3:61082692-61082711 | Msa1114290:intron | 25.0% |
| ! | GTATTGAAAAGTAGTGAAAT+GGG | - | chr7_3:61082693-61082712 | Msa1114290:intron | 25.0% |
| ! | TACAAATGGTTCAGTTATTA+AGG | - | chr7_3:61082743-61082762 | Msa1114290:intron | 25.0% |
| ! | ACAAATGGTTCAGTTATTAA+GGG | - | chr7_3:61082744-61082763 | Msa1114290:intron | 25.0% |
| !!! | TTTTAGGTTATTTTCACAAG+TGG | + | chr7_3:61082812-61082831 | Msa1114300:intron | 25.0% |
| !! | TTTGTTGTAAATACTTGCAA+TGG | + | chr7_3:61082876-61082895 | Msa1114300:intron | 25.0% |
| ! | AAGAACATCTCTTTCTATAT+AGG | - | chr7_3:61083229-61083248 | Msa1114290:intron | 25.0% |
| ! | AAAAAGAAAAAGAAAAAGGG+GGG | - | chr7_3:61083685-61083704 | Msa1114290:intron | 25.0% |
| ! | CTTAAAACATACAGAAAGTT+AGG | + | chr7_3:61083768-61083787 | Msa1114300:intron | 25.0% |
| ! | TTATGAGGATATATACAACA+AGG | - | chr7_3:61083895-61083914 | Msa1114290:intron | 25.0% |
| !!! | AAATATAAGTATGGGTTAGA+TGG | + | chr7_3:61083948-61083967 | Msa1114300:intron | 25.0% |
| ! | CTAAGGTTTGATAAGAAAAA+TGG | - | chr7_3:61084074-61084093 | Msa1114290:intron | 25.0% |
| ! | TTTACGAAATATGCATGAAA+AGG | - | chr7_3:61084372-61084391 | Msa1114290:intron | 25.0% |
| ! | TTGGATTTGAAGATTTATCT+CGG | - | chr7_3:61084518-61084537 | Msa1114290:intron | 25.0% |
| ! | TACAAAATCCGTCTAATTTA+AGG | + | chr7_3:61084591-61084610 | Msa1114300:intron | 25.0% |
| ! | AAGAAAAGTAAATCTCTCAA+AGG | - | chr7_3:61084618-61084637 | Msa1114290:intron | 25.0% |
| ! | GAAGAAGTAAATGAAAAGAA+TGG | + | chr7_3:61084648-61084667 | Msa1114300:intron | 25.0% |
| !! | CATCACTCATTCTTTTTATA+TGG | + | chr7_3:61084814-61084833 | Msa1114300:intron | 25.0% |
| ! | CATATAAAAAGAATGAGTGA+TGG | - | chr7_3:61084812-61084831 | Msa1114290:intron | 25.0% |
| ! | TGATGGAATGATTTATATGT+TGG | - | chr7_3:61084829-61084848 | Msa1114290:intron | 25.0% |
| ! | AATATTCTTGTACTTCTTAG+TGG | - | chr7_3:61084872-61084891 | Msa1114290:intron | 25.0% |
| ! | TGAATTTCTCCTTATATTGT+CGG | + | chr7_3:61085109-61085128 | Msa1114300:CDS | 25.0% |
| ! | AGGGAAAATATTAGAAATCT+TGG | - | chr7_3:61085182-61085201 | Msa1114290:intron | 25.0% |
| ! | GGGAAAATATTAGAAATCTT+GGG | - | chr7_3:61085183-61085202 | Msa1114290:intron | 25.0% |
| CGTTAGATCGTTGTAATTAA+GGG | + | chr7_3:61080362-61080381 | None:intergenic | 30.0% | |
| CCTTAATTACAACGATCTAA+CGG | - | chr7_3:61080360-61080379 | Msa1114290:CDS | 30.0% | |
| ! | TCATTTTCTTTCATGCTTAG+TGG | + | chr7_3:61080477-61080496 | None:intergenic | 30.0% |
| ! | ATACACTATTGGTTACATGT+GGG | + | chr7_3:61081078-61081097 | None:intergenic | 30.0% |
| !!! | TTGGTTGGCTTTTATATGTT+GGG | + | chr7_3:61081328-61081347 | None:intergenic | 30.0% |
| !!! | TTTGGTTGGCTTTTATATGT+TGG | + | chr7_3:61081329-61081348 | None:intergenic | 30.0% |
| TTGTCTAATGATTCAGTAGT+AGG | - | chr7_3:61081573-61081592 | Msa1114290:intron | 30.0% | |
| TGTCTAATGATTCAGTAGTA+GGG | - | chr7_3:61081574-61081593 | Msa1114290:intron | 30.0% | |
| TTGTGTTTGGATTATGTGAT+TGG | + | chr7_3:61082201-61082220 | Msa1114300:intron | 30.0% | |
| GTAAACATACCGAAATTACT+AGG | - | chr7_3:61082266-61082285 | Msa1114290:intron | 30.0% | |
| AAACTTAAACACAAAAGTGG+AGG | + | chr7_3:61082328-61082347 | Msa1114300:intron | 30.0% | |
| !! | GTGTTTAAGTTTTCAATGAC+TGG | - | chr7_3:61082336-61082355 | Msa1114290:intron | 30.0% |
| ! | TGCCTCATATCTCTTTTATT+AGG | + | chr7_3:61082380-61082399 | Msa1114300:intron | 30.0% |
| AATAAAAGAGATATGAGGCA+TGG | - | chr7_3:61082380-61082399 | Msa1114290:intron | 30.0% | |
| AAGTTGTTTATCCAAACATC+GGG | + | chr7_3:61082434-61082453 | Msa1114300:intron | 30.0% | |
| CAAGTTGTTTATCCAAACAT+CGG | + | chr7_3:61082435-61082454 | Msa1114300:intron | 30.0% | |
| TTAGTGTCTTTGTCAAGTAT+TGG | - | chr7_3:61082569-61082588 | Msa1114290:intron | 30.0% | |
| TGTAAAAAAAATACTGTCCC+AGG | + | chr7_3:61082727-61082746 | Msa1114300:intron | 30.0% | |
| ! | TTGAAGCCATTTGAAACTAA+AGG | + | chr7_3:61082989-61083008 | Msa1114300:intron | 30.0% |
| ATCTGGACTCAAAATATTAG+TGG | - | chr7_3:61083049-61083068 | Msa1114290:intron | 30.0% | |
| TCTGGACTCAAAATATTAGT+GGG | - | chr7_3:61083050-61083069 | Msa1114290:intron | 30.0% | |
| TAATTGTAGAAAAGGAGGTA+AGG | + | chr7_3:61084297-61084316 | Msa1114300:intron | 30.0% | |
| AGAGTTAATTGTAGAAAAGG+AGG | + | chr7_3:61084302-61084321 | Msa1114300:intron | 30.0% | |
| TAAGTCAACAAAAGAAGTGA+AGG | - | chr7_3:61084925-61084944 | Msa1114290:intron | 30.0% | |
| ! | AAATTCAAATGGGCAGTTTT+GGG | - | chr7_3:61085122-61085141 | Msa1114290:intron | 30.0% |
| TATTAGAAATCTTGGGAGAT+TGG | - | chr7_3:61085190-61085209 | Msa1114290:intron | 30.0% | |
| AAGAGAGAAATGGAAAACTT+TGG | - | chr7_3:61085247-61085266 | Msa1114290:CDS | 30.0% | |
| AAGGAGTGAGAATTGATCAA+CGG | - | chr7_3:61080322-61080341 | Msa1114290:intron | 35.0% | |
| CCGTTAGATCGTTGTAATTA+AGG | + | chr7_3:61080363-61080382 | None:intergenic | 35.0% | |
| TAGATTGGAGCCAAAAAAGT+AGG | - | chr7_3:61080389-61080408 | Msa1114290:CDS | 35.0% | |
| GAGCCAAAAAAGTAGGTTTA+GGG | - | chr7_3:61080396-61080415 | Msa1114290:CDS | 35.0% | |
| AGCCAAAAAAGTAGGTTTAG+GGG | - | chr7_3:61080397-61080416 | Msa1114290:CDS | 35.0% | |
| !!! | AACCCCTAAACCTACTTTTT+TGG | + | chr7_3:61080402-61080421 | None:intergenic | 35.0% |
| TTAGGGTAAGAATGTTTGCT+AGG | - | chr7_3:61080427-61080446 | Msa1114290:CDS | 35.0% | |
| ACATTGCAAACACATCATGA+CGG | - | chr7_3:61080537-61080556 | Msa1114290:CDS | 35.0% | |
| ! | GATACACTATTGGTTACATG+TGG | + | chr7_3:61081079-61081098 | None:intergenic | 35.0% |
| TTAGGAGATCGATACACTAT+TGG | + | chr7_3:61081089-61081108 | None:intergenic | 35.0% | |
| CTTCTAAACTTATGCCTTGA+GGG | + | chr7_3:61081165-61081184 | None:intergenic | 35.0% | |
| !! | ATTCTTAACTTGTGCCCTTA+GGG | - | chr7_3:61081287-61081306 | Msa1114290:CDS | 35.0% |
| ACATACCGAAATTACTAGGT+TGG | - | chr7_3:61082270-61082289 | Msa1114290:intron | 35.0% | |
| ATAAAGACTTACCCGATGTT+TGG | - | chr7_3:61082420-61082439 | Msa1114290:intron | 35.0% | |
| ATGGTTCAGTTATTAAGGGA+CGG | - | chr7_3:61082748-61082767 | Msa1114290:intron | 35.0% | |
| ! | CCTTTTGCCTTGTAGAATAA+GGG | + | chr7_3:61082930-61082949 | Msa1114300:intron | 35.0% |
| CCTTATTCTACAAGGCAAAA+GGG | - | chr7_3:61082928-61082947 | Msa1114290:intron | 35.0% | |
| ! | TCTCTGCCTTTAGTTTCAAA+TGG | - | chr7_3:61082980-61082999 | Msa1114290:intron | 35.0% |
| TTTGTGAATGCAACCAAACA+TGG | - | chr7_3:61083014-61083033 | Msa1114290:intron | 35.0% | |
| CTGGACTCAAAATATTAGTG+GGG | - | chr7_3:61083051-61083070 | Msa1114290:intron | 35.0% | |
| TTATCAAACCTTAGTCCTAG+TGG | + | chr7_3:61084068-61084087 | Msa1114300:intron | 35.0% | |
| TATATTGCTGATGCTTACCT+TGG | - | chr7_3:61084104-61084123 | Msa1114290:intron | 35.0% | |
| AAGTCATTGGTGAAGTGAAA+GGG | + | chr7_3:61084194-61084213 | Msa1114300:intron | 35.0% | |
| TTCACTGATATCCAAGTCAT+TGG | + | chr7_3:61084207-61084226 | Msa1114300:intron | 35.0% | |
| TTGGATATCAGTGAAGATGA+AGG | - | chr7_3:61084212-61084231 | Msa1114290:intron | 35.0% | |
| TAGAGTCTGTTCAAGAGTTT+AGG | + | chr7_3:61084702-61084721 | Msa1114300:intron | 35.0% | |
| TTGCTTAAAGCAACACCATT+AGG | + | chr7_3:61084974-61084993 | Msa1114300:intron | 35.0% | |
| ! | GAAATTCAAATGGGCAGTTT+TGG | - | chr7_3:61085121-61085140 | Msa1114290:intron | 35.0% |
| AAAACTTTGGATTGCATCAG+TGG | - | chr7_3:61085260-61085279 | Msa1114290:CDS | 35.0% | |
| TCAGTGGAAATGCCTTATAT+TGG | - | chr7_3:61085276-61085295 | Msa1114290:CDS | 35.0% | |
| !! | GTAGTGTGCAAAAGTGTTGT+TGG | - | chr7_3:61080132-61080151 | Msa1114290:CDS | 40.0% |
| ! | AGTGTTGTTGGAATCAGAGA+TGG | - | chr7_3:61080144-61080163 | Msa1114290:CDS | 40.0% |
| !! | AAGAAACGCGAGCTTGTTTT+GGG | - | chr7_3:61080272-61080291 | Msa1114290:intron | 40.0% |
| ATCTAACGGTCGAGATAGAT+TGG | - | chr7_3:61080374-61080393 | Msa1114290:CDS | 40.0% | |
| GGAGCCAAAAAAGTAGGTTT+AGG | - | chr7_3:61080395-61080414 | Msa1114290:CDS | 40.0% | |
| AGGTTTAGGGGTTGAGAATT+AGG | - | chr7_3:61080409-61080428 | Msa1114290:CDS | 40.0% | |
| GGTTTAGGGGTTGAGAATTA+GGG | - | chr7_3:61080410-61080429 | Msa1114290:CDS | 40.0% | |
| AGACAATCTCACTGCTAAGA+AGG | - | chr7_3:61080506-61080525 | Msa1114290:CDS | 40.0% | |
| !! | TAAATTTGCTAGGTGAGCAG+TGG | - | chr7_3:61080834-61080853 | Msa1114290:intron | 40.0% |
| AAAAAGCCACTGAGAGGTTT+CGG | + | chr7_3:61080984-61081003 | None:intergenic | 40.0% | |
| !! | AATGTTAACTTGTGCCCTCA+AGG | - | chr7_3:61081148-61081167 | Msa1114290:intron | 40.0% |
| GCTTCTAAACTTATGCCTTG+AGG | + | chr7_3:61081166-61081185 | None:intergenic | 40.0% | |
| !! | GATTCTTAACTTGTGCCCTT+AGG | - | chr7_3:61081286-61081305 | Msa1114290:CDS | 40.0% |
| !! | CATGTTAACTTGTGCCCTAA+GGG | + | chr7_3:61081304-61081323 | None:intergenic | 40.0% |
| !! | TCATGTTAACTTGTGCCCTA+AGG | + | chr7_3:61081305-61081324 | None:intergenic | 40.0% |
| TAATGATTCAGTAGTAGGGC+TGG | - | chr7_3:61081578-61081597 | Msa1114290:intron | 40.0% | |
| TTCGGTATGTTTACCAGTGT+GGG | + | chr7_3:61082260-61082279 | Msa1114300:intron | 40.0% | |
| TTTCGGTATGTTTACCAGTG+TGG | + | chr7_3:61082261-61082280 | Msa1114300:intron | 40.0% | |
| GACGTCCAACCTAGTAATTT+CGG | + | chr7_3:61082278-61082297 | Msa1114300:intron | 40.0% | |
| ACAAAAGTGGAGGAGTTGTA+GGG | + | chr7_3:61082318-61082337 | Msa1114300:intron | 40.0% | |
| TGAAATGGGTCAAGATTCCT+GGG | - | chr7_3:61082707-61082726 | Msa1114290:intron | 40.0% | |
| CCCTTATTCTACAAGGCAAA+AGG | - | chr7_3:61082927-61082946 | Msa1114290:intron | 40.0% | |
| ! | CCCTTTTGCCTTGTAGAATA+AGG | + | chr7_3:61082931-61082950 | Msa1114300:intron | 40.0% |
| TTGCATGATACACGTGCATA+TGG | - | chr7_3:61083276-61083295 | Msa1114290:intron | 40.0% | |
| TGCATGATACACGTGCATAT+GGG | - | chr7_3:61083277-61083296 | Msa1114290:intron | 40.0% | |
| ACAGAAAGTTAGGTCTCCAA+TGG | + | chr7_3:61083758-61083777 | Msa1114300:intron | 40.0% | |
| CAGAGTTGGAGCATATTTGT+GGG | - | chr7_3:61084039-61084058 | Msa1114290:intron | 40.0% | |
| CAAGTCATTGGTGAAGTGAA+AGG | + | chr7_3:61084195-61084214 | Msa1114300:intron | 40.0% | |
| CTTTCACTTCACCAATGACT+TGG | - | chr7_3:61084193-61084212 | Msa1114290:intron | 40.0% | |
| ! | AAGGGTATGATTGGGAGATA+AGG | - | chr7_3:61084435-61084454 | Msa1114290:intron | 40.0% |
| TCTGTTCAAGAGTTTAGGAG+GGG | + | chr7_3:61084697-61084716 | Msa1114300:intron | 40.0% | |
| GTCTGTTCAAGAGTTTAGGA+GGG | + | chr7_3:61084698-61084717 | Msa1114300:intron | 40.0% | |
| AGTCTGTTCAAGAGTTTAGG+AGG | + | chr7_3:61084699-61084718 | Msa1114300:intron | 40.0% | |
| !!! | TGTTGGTCACTTTTGTTTGC+AGG | - | chr7_3:61084846-61084865 | Msa1114290:intron | 40.0% |
| !! | GAAGTGAAGGTCTTGTTAAG+AGG | - | chr7_3:61084938-61084957 | Msa1114290:intron | 40.0% |
| !! | AGAGGACTTGCTTTTCCTAA+TGG | - | chr7_3:61084956-61084975 | Msa1114290:intron | 40.0% |
| !! | GGTGTTGCTTTAAGCAAAGA+TGG | - | chr7_3:61084977-61084996 | Msa1114290:intron | 40.0% |
| ! | AACACTTTTGCTGATCTTCC+AGG | - | chr7_3:61085079-61085098 | Msa1114290:intron | 40.0% |
| CCTTATATTGTCGGAAAACC+TGG | + | chr7_3:61085100-61085119 | Msa1114300:CDS | 40.0% | |
| ! | CCAGGTTTTCCGACAATATA+AGG | - | chr7_3:61085097-61085116 | Msa1114290:intron | 40.0% |
| CTATAAAGCTGAGTGGTGAA+GGG | - | chr7_3:61085163-61085182 | Msa1114290:intron | 40.0% | |
| AAATCTTGGGAGATTGGCAA+GGG | - | chr7_3:61085196-61085215 | Msa1114290:intron | 40.0% | |
| CACTTCACTGATGTTCTTCA+TGG | + | chr7_3:61085226-61085245 | Msa1114300:CDS | 40.0% | |
| CATGAAGAACATCAGTGAAG+TGG | - | chr7_3:61085224-61085243 | Msa1114290:CDS | 40.0% | |
| AGTGAAGTGGAAGAGAGAAA+TGG | - | chr7_3:61085237-61085256 | Msa1114290:CDS | 40.0% | |
| !! | GAAGAAACGCGAGCTTGTTT+TGG | - | chr7_3:61080271-61080290 | Msa1114290:intron | 45.0% |
| AACGCGTGTGTTGTGTTTCA+AGG | - | chr7_3:61080303-61080322 | Msa1114290:intron | 45.0% | |
| ATCTCACTGCTAAGAAGGTG+TGG | - | chr7_3:61080511-61080530 | Msa1114290:CDS | 45.0% | |
| ! | TCTCACTGCTAAGAAGGTGT+GGG | - | chr7_3:61080512-61080531 | Msa1114290:CDS | 45.0% |
| TAGGTGAGCAGTGGACAATA+TGG | - | chr7_3:61080843-61080862 | Msa1114290:intron | 45.0% | |
| ! | CTTCTGAAAAAGCCACTGAG+AGG | + | chr7_3:61080990-61081009 | None:intergenic | 45.0% |
| GTTACATGTGGGACTTCATC+AGG | + | chr7_3:61081067-61081086 | None:intergenic | 45.0% | |
| CAAAAGTGGAGGAGTTGTAG+GGG | + | chr7_3:61082317-61082336 | Msa1114300:intron | 45.0% | |
| CACAAAAGTGGAGGAGTTGT+AGG | + | chr7_3:61082319-61082338 | Msa1114300:intron | 45.0% | |
| GTGAAATGGGTCAAGATTCC+TGG | - | chr7_3:61082706-61082725 | Msa1114290:intron | 45.0% | |
| GTTCAGTTATTAAGGGACGG+AGG | - | chr7_3:61082751-61082770 | Msa1114290:intron | 45.0% | |
| AAACGGGCCCTTATTCTACA+AGG | - | chr7_3:61082920-61082939 | Msa1114290:intron | 45.0% | |
| ATGCAACCAAACATGGAGAC+AGG | - | chr7_3:61083021-61083040 | Msa1114290:intron | 45.0% | |
| TGCAACCAAACATGGAGACA+GGG | - | chr7_3:61083022-61083041 | Msa1114290:intron | 45.0% | |
| ATGATACACGTGCATATGGG+CGG | - | chr7_3:61083280-61083299 | Msa1114290:intron | 45.0% | |
| GAAAGTTAGGTCTCCAATGG+CGG | + | chr7_3:61083755-61083774 | Msa1114300:intron | 45.0% | |
| CCACAAATATGCTCCAACTC+TGG | + | chr7_3:61084041-61084060 | Msa1114300:intron | 45.0% | |
| CCAGAGTTGGAGCATATTTG+TGG | - | chr7_3:61084038-61084057 | Msa1114290:intron | 45.0% | |
| AGTTGGAGCATATTTGTGGG+AGG | - | chr7_3:61084042-61084061 | Msa1114290:intron | 45.0% | |
| TTACCTTGGCCTCAATGTAG+TGG | - | chr7_3:61084118-61084137 | Msa1114290:intron | 45.0% | |
| TACCTTGGCCTCAATGTAGT+GGG | - | chr7_3:61084119-61084138 | Msa1114290:intron | 45.0% | |
| ! | TCAATGTAGTGGGACCTACT+GGG | - | chr7_3:61084129-61084148 | Msa1114290:intron | 45.0% |
| AGCCACTCAACTAGCAATAG+AGG | - | chr7_3:61084157-61084176 | Msa1114290:intron | 45.0% | |
| AGCCTCTATTGCTAGTTGAG+TGG | + | chr7_3:61084162-61084181 | Msa1114300:intron | 45.0% | |
| CAACTAGCAATAGAGGCTGA+AGG | - | chr7_3:61084164-61084183 | Msa1114290:intron | 45.0% | |
| CAAGCACAGTCTATCAGAGA+AGG | - | chr7_3:61084255-61084274 | Msa1114290:intron | 45.0% | |
| TTCTTAGTGGAGACGCAACT+GGG | - | chr7_3:61084885-61084904 | Msa1114290:intron | 45.0% | |
| CCTCGAACTGCAGAATTCTT+CGG | - | chr7_3:61085023-61085042 | Msa1114290:intron | 45.0% | |
| ACTGCAGAATTCTTCGGCTT+TGG | - | chr7_3:61085029-61085048 | Msa1114290:intron | 45.0% | |
| !!! | GTGTTGACTTTGCCAGCTTT+TGG | + | chr7_3:61085064-61085083 | Msa1114300:intron | 45.0% |
| TCAGCAGCTATAAAGCTGAG+TGG | - | chr7_3:61085156-61085175 | Msa1114290:intron | 45.0% | |
| GCTATAAAGCTGAGTGGTGA+AGG | - | chr7_3:61085162-61085181 | Msa1114290:intron | 45.0% | |
| GAAATCTTGGGAGATTGGCA+AGG | - | chr7_3:61085195-61085214 | Msa1114290:intron | 45.0% | |
| !! | TGTATAAATTAAAAAAAAAT+CGG | - | chr7_3:61083430-61083449 | Msa1114290:intron | 5.0% |
| !! | AAATATATAAGTTAAAATAT+AGG | - | chr7_3:61083462-61083481 | Msa1114290:intron | 5.0% |
| !!! | TTTTTTTAATTTTTTTTTAC+CGG | + | chr7_3:61083665-61083684 | Msa1114300:intron | 5.0% |
| GTTGGAATCAGAGATGGCTG+CGG | - | chr7_3:61080150-61080169 | Msa1114290:CDS | 50.0% | |
| AGAGGAGATGGTGAGATGCT+TGG | - | chr7_3:61080191-61080210 | Msa1114290:CDS | 50.0% | |
| ! | GCGGTGGTGATGATGATAAG+AGG | - | chr7_3:61080243-61080262 | Msa1114290:CDS | 50.0% |
| ATGTCAGATGTGTTCGACCC+TGG | - | chr7_3:61081373-61081392 | Msa1114290:CDS | 50.0% | |
| ! | CCAGTGTGGGCTAAAACTTG+TGG | + | chr7_3:61082247-61082266 | Msa1114300:intron | 50.0% |
| !! | CCACAAGTTTTAGCCCACAC+TGG | - | chr7_3:61082244-61082263 | Msa1114290:intron | 50.0% |
| ! | ACTAGGTTGGACGTCGTGAT+CGG | - | chr7_3:61082283-61082302 | Msa1114290:intron | 50.0% |
| GCAACCAAACATGGAGACAG+GGG | - | chr7_3:61083023-61083042 | Msa1114290:intron | 50.0% | |
| TGATACACGTGCATATGGGC+GGG | - | chr7_3:61083281-61083300 | Msa1114290:intron | 50.0% | |
| CATATTTGTGGGAGGCCACT+AGG | - | chr7_3:61084050-61084069 | Msa1114290:intron | 50.0% | |
| CAGTAGGTCCCACTACATTG+AGG | + | chr7_3:61084130-61084149 | Msa1114300:intron | 50.0% | |
| ! | CTCAATGTAGTGGGACCTAC+TGG | - | chr7_3:61084128-61084147 | Msa1114290:intron | 50.0% |
| ! | CAATGTAGTGGGACCTACTG+GGG | - | chr7_3:61084130-61084149 | Msa1114290:intron | 50.0% |
| ! | AATGTAGTGGGACCTACTGG+GGG | - | chr7_3:61084131-61084150 | Msa1114290:intron | 50.0% |
| AGTTTAGGAGGGGAGAGAAG+GGG | + | chr7_3:61084687-61084706 | Msa1114300:intron | 50.0% | |
| GAGTTTAGGAGGGGAGAGAA+GGG | + | chr7_3:61084688-61084707 | Msa1114300:intron | 50.0% | |
| AGAGTTTAGGAGGGGAGAGA+AGG | + | chr7_3:61084689-61084708 | Msa1114300:intron | 50.0% | |
| CTTCTTAGTGGAGACGCAAC+TGG | - | chr7_3:61084884-61084903 | Msa1114290:intron | 50.0% | |
| CCGAAGAATTCTGCAGTTCG+AGG | + | chr7_3:61085026-61085045 | Msa1114300:intron | 50.0% | |
| ! | ATTCTTCGGCTTTGGCTTCG+TGG | - | chr7_3:61085037-61085056 | Msa1114290:intron | 50.0% |
| CCTCTTCACACTCCACCCAT+CGG | + | chr7_3:61080176-61080195 | None:intergenic | 55.0% | |
| GGTGGAGTGTGAAGAGGAGA+TGG | - | chr7_3:61080179-61080198 | Msa1114290:CDS | 55.0% | |
| AAGCTGCCGAAACCTCTCAG+TGG | - | chr7_3:61080975-61080994 | Msa1114290:intron | 55.0% | |
| GAGCTCAGACGAGTTCGACT+CGG | + | chr7_3:61081616-61081635 | Msa1114300:intron | 55.0% | |
| ACCAAACATGGAGACAGGGG+CGG | - | chr7_3:61083026-61083045 | Msa1114290:intron | 55.0% | |
| GAAAAAGGGGGGACCTATGC+TGG | - | chr7_3:61083696-61083715 | Msa1114290:intron | 55.0% | |
| TGCCACACTGTGCCTTGAAG+AGG | - | chr7_3:61083728-61083747 | Msa1114290:intron | 55.0% | |
| GACCTCTTCAAGGCACAGTG+TGG | + | chr7_3:61083733-61083752 | Msa1114300:intron | 55.0% | |
| !! | TCCAATGGCGGACCTCTTCA+AGG | + | chr7_3:61083743-61083762 | Msa1114300:intron | 55.0% |
| TGCTCCAACTCTGGTGCGAA+CGG | + | chr7_3:61084032-61084051 | Msa1114300:intron | 55.0% | |
| GTCCCACTACATTGAGGCCA+AGG | + | chr7_3:61084124-61084143 | Msa1114300:intron | 55.0% | |
| TGAGTGGCTAAACCCCCAGT+AGG | + | chr7_3:61084146-61084165 | Msa1114300:intron | 55.0% | |
| TGGCTTCGTGGACCAAAAGC+TGG | - | chr7_3:61085049-61085068 | Msa1114290:intron | 55.0% | |
| CCGATGGGTGGAGTGTGAAG+AGG | - | chr7_3:61080173-61080192 | Msa1114290:CDS | 60.0% | |
| CAACCCTCTCCCCCATCCAT+CGG | + | chr7_3:61080223-61080242 | None:intergenic | 60.0% | |
| TCCGCCCCTGTCTCCATGTT+TGG | + | chr7_3:61083030-61083049 | Msa1114300:intron | 60.0% | |
| GGCAAGTGCCACACCAGCAT+AGG | + | chr7_3:61083712-61083731 | Msa1114300:intron | 60.0% | |
| GCCTTGAAGAGGTCCGCCAT+TGG | - | chr7_3:61083739-61083758 | Msa1114290:intron | 60.0% | |
| GTGGGAGGCCACTAGGACTA+AGG | - | chr7_3:61084057-61084076 | Msa1114290:intron | 60.0% | |
| TCAGAGATGGCTGCGGCCGA+TGG | - | chr7_3:61080157-61080176 | Msa1114290:CDS | 65.0% | |
| CAGAGATGGCTGCGGCCGAT+GGG | - | chr7_3:61080158-61080177 | Msa1114290:CDS | 65.0% | |
| AGATGCTTGGTCGCCGCCGA+TGG | - | chr7_3:61080204-61080223 | Msa1114290:CDS | 65.0% | |
| CTTGGTCGCCGCCGATGGAT+GGG | - | chr7_3:61080209-61080228 | Msa1114290:CDS | 65.0% | |
| TTGGTCGCCGCCGATGGATG+GGG | - | chr7_3:61080210-61080229 | Msa1114290:CDS | 65.0% | |
| CGATGGATGGGGGAGAGGGT+TGG | - | chr7_3:61080221-61080240 | Msa1114290:CDS | 65.0% | |
| TGGATGGGGGAGAGGGTTGG+CGG | - | chr7_3:61080224-61080243 | Msa1114290:CDS | 65.0% | |
| CATGGAGACAGGGGCGGATC+TGG | - | chr7_3:61083032-61083051 | Msa1114290:intron | 65.0% | |
| AGGGGGGACCTATGCTGGTG+TGG | - | chr7_3:61083701-61083720 | Msa1114290:intron | 65.0% | |
| GCGTCCGTTCGCACCAGAGT+TGG | - | chr7_3:61084025-61084044 | Msa1114290:intron | 65.0% | |
| AGATGGCTGCGGCCGATGGG+TGG | - | chr7_3:61080161-61080180 | Msa1114290:CDS | 70.0% | |
| GCTTGGTCGCCGCCGATGGA+TGG | - | chr7_3:61080208-61080227 | Msa1114290:CDS | 70.0% | |
| TGGTCGCCGCCGATGGATGG+GGG | - | chr7_3:61080211-61080230 | Msa1114290:CDS | 70.0% | |
| CCCTCTCCCCCATCCATCGG+CGG | + | chr7_3:61080220-61080239 | None:intergenic | 70.0% | |
| CCGCCGATGGATGGGGGAGA+GGG | - | chr7_3:61080217-61080236 | Msa1114290:CDS | 70.0% | |
| ! | ATGGGGGAGAGGGTTGGCGG+TGG | - | chr7_3:61080227-61080246 | Msa1114290:CDS | 70.0% |
| GCCGCCGATGGATGGGGGAG+AGG | - | chr7_3:61080216-61080235 | Msa1114290:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_3 | gene | 61080129 | 61085320 | 61080129 | ID=Msa1114290;Name=Msa1114290 |
| chr7_3 | mRNA | 61080129 | 61085320 | 61080129 | ID=Msa1114290-mRNA-1;Parent=Msa1114290;Name=Msa1114290-mRNA-1;_AED=0.43;_eAED=0.43;_QI=0|0.33|0|0.75|1|1|4|0|255 |
| chr7_3 | exon | 61085211 | 61085320 | 61085211 | ID=Msa1114290-mRNA-1:exon:13799;Parent=Msa1114290-mRNA-1 |
| chr7_3 | exon | 61081173 | 61081436 | 61081173 | ID=Msa1114290-mRNA-1:exon:13798;Parent=Msa1114290-mRNA-1 |
| chr7_3 | exon | 61080349 | 61080581 | 61080349 | ID=Msa1114290-mRNA-1:exon:13797;Parent=Msa1114290-mRNA-1 |
| chr7_3 | exon | 61080129 | 61080289 | 61080129 | ID=Msa1114290-mRNA-1:exon:13796;Parent=Msa1114290-mRNA-1 |
| chr7_3 | CDS | 61085211 | 61085320 | 61085211 | ID=Msa1114290-mRNA-1:cds;Parent=Msa1114290-mRNA-1 |
| chr7_3 | CDS | 61081173 | 61081436 | 61081173 | ID=Msa1114290-mRNA-1:cds;Parent=Msa1114290-mRNA-1 |
| chr7_3 | CDS | 61080349 | 61080581 | 61080349 | ID=Msa1114290-mRNA-1:cds;Parent=Msa1114290-mRNA-1 |
| chr7_3 | CDS | 61080129 | 61080289 | 61080129 | ID=Msa1114290-mRNA-1:cds;Parent=Msa1114290-mRNA-1 |
| Gene Sequence |
| Protein sequence |
