AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1073500


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1073500 MtrunA17_Chr7g0256581 75.000 96 23 1 1 96 1 95 1.19e-45 150
Msa1073500 MtrunA17_Chr5g0443561 75.000 96 18 1 1 96 1 90 3.88e-43 142
Msa1073500 MtrunA17_Chr7g0256571 72.917 96 25 1 1 96 1 95 6.69e-42 140
Msa1073500 MtrunA17_Chr7g0256561 69.792 96 22 2 1 96 11 99 1.28e-39 134
Msa1073500 MtrunA17_Chr2g0322241 50.725 69 31 2 29 96 47 113 5.33e-15 68.6
Msa1073500 MtrunA17_Chr7g0256601 67.442 43 14 0 52 94 86 128 2.70e-14 66.6
Msa1073500 MtrunA17_Chr4g0025341 55.357 56 23 1 41 96 57 110 9.13e-14 65.1
Msa1073500 MtrunA17_Chr7g0256591 63.636 44 16 0 52 95 56 99 1.16e-13 64.7
Msa1073500 MtrunA17_Chr4g0062001 57.447 47 20 0 50 96 35 81 2.10e-13 63.9
Msa1073500 MtrunA17_Chr2g0329531 57.778 45 19 0 51 95 79 123 2.33e-13 63.9
Msa1073500 MtrunA17_Chr8g0376581 53.191 47 22 0 50 96 33 79 1.19e-11 58.9
Msa1073500 MtrunA17_Chr4g0062051 54.545 44 20 0 53 96 41 84 2.99e-11 56.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1073500 AT3G57030.1 45.833 96 47 2 6 96 3 98 1.31e-23 92.8
Msa1073500 AT3G57010.1 41.489 94 54 1 3 96 4 96 2.93e-18 78.2
Msa1073500 AT3G57020.1 44.578 83 44 2 14 96 15 95 6.08e-17 74.3
Msa1073500 AT3G57020.2 44.578 83 44 2 14 96 15 95 6.12e-17 74.3
Msa1073500 AT5G22020.3 55.000 60 25 1 37 96 58 115 9.84e-16 71.2
Msa1073500 AT5G22020.1 55.000 60 25 1 37 96 58 115 9.84e-16 71.2
Msa1073500 AT5G22020.2 55.000 60 25 1 37 96 58 115 9.84e-16 71.2
Msa1073500 AT2G41290.1 55.769 52 23 0 45 96 42 93 2.26e-14 67.0
Msa1073500 AT1G08470.1 55.357 56 23 1 41 96 56 109 2.54e-14 67.0
Msa1073500 AT3G59530.3 53.191 47 22 0 49 95 79 125 1.04e-11 59.7
Msa1073500 AT3G59530.2 53.191 47 22 0 49 95 79 125 1.04e-11 59.7
Msa1073500 AT3G59530.1 53.191 47 22 0 49 95 79 125 1.04e-11 59.7

Find 99 sgRNAs with CRISPR-Local

Find 192 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CACTTCACTGATGTTCTTCA+TGG 0.198711 7_2:-71075699 None:intergenic
TTCTCCCTCTATTGGTATAA+TGG 0.231183 7_2:-71075814 None:intergenic
GAAATTCAAATGGGCAGTTT+TGG 0.232638 7_2:+71075597 Msa1073500:three_prime_UTR
TATATTGGTGTTTATAGTTT+AGG 0.238782 7_2:+71075767 Msa1073500:three_prime_UTR
CTCAATGTAGTGGGACCTAC+TGG 0.241265 7_2:+71074604 Msa1073500:three_prime_UTR
ACAAAACTGTGAATATTTAT+AGG 0.268429 7_2:-71075998 None:intergenic
TTGTTTCTTTCTCCCTCTAT+TGG 0.299218 7_2:-71075822 None:intergenic
AATATTCTTGTACTTCTTAG+TGG 0.314755 7_2:+71075347 Msa1073500:three_prime_UTR
AGGGAAAATATTAGAAATCT+TGG 0.328667 7_2:+71075658 Msa1073500:three_prime_UTR
TTTAGTCCCTAAAATGCTTA+AGG 0.331045 7_2:-71076071 None:intergenic
TTGCTTAAAGCAACACCATT+AGG 0.331103 7_2:-71075446 None:intergenic
GTATTGACTTTGCCAGCTTT+TGG 0.331769 7_2:-71075536 None:intergenic
ACTGCAGAATTCTTCGGCTT+TGG 0.342556 7_2:+71075504 Msa1073500:three_prime_UTR
TATTAGAAATCTTGGGAGAT+TGG 0.345041 7_2:+71075666 Msa1073500:three_prime_UTR
TAAAACCATTATACCAATAG+AGG 0.347374 7_2:+71075809 Msa1073500:three_prime_UTR
AAACTATAAACACCAATATA+AGG 0.351153 7_2:-71075764 None:intergenic
TTGCTGTCACGAGTTCTAAT+AGG 0.352873 7_2:+71073558 Msa1073500:CDS
CTTCTTAGTGGAGACGCAAC+TGG 0.367623 7_2:+71075359 Msa1073500:three_prime_UTR
CAAAACTGTGAATATTTATA+GGG 0.377191 7_2:-71075997 None:intergenic
ACTCTCCGGTCCGACGGCTT+TGG 0.383656 7_2:-71073441 None:intergenic
AAGAGAGAAATGGAAAACTT+TGG 0.411409 7_2:+71075723 Msa1073500:three_prime_UTR
CAAACAGAGTAGAATGATAT+AGG 0.417714 7_2:+71075842 Msa1073500:three_prime_UTR
ATTCTTCGGCTTTGGCTTCG+TGG 0.418524 7_2:+71075512 Msa1073500:three_prime_UTR
TCAATGTAGTGGGACCTACT+GGG 0.421424 7_2:+71074605 Msa1073500:three_prime_UTR
CTTTCACTTCACCAATGACT+TGG 0.432489 7_2:+71074669 Msa1073500:three_prime_UTR
AAAGAGAAAGTGTCGTTTGA+AGG 0.434668 7_2:-71073218 None:intergenic
CTTATATTGTCGGGAAAACC+TGG 0.434775 7_2:-71075572 None:intergenic
TGAATTTCTCCTTATATTGT+CGG 0.438415 7_2:-71075582 None:intergenic
CCTCGAACTGCAGAATTCTT+CGG 0.438961 7_2:+71075498 Msa1073500:three_prime_UTR
AGTAGAATGATATAGGTGAT+AGG 0.443259 7_2:+71075849 Msa1073500:three_prime_UTR
TTCATGTTTATGATAAACTA+AGG 0.444206 7_2:-71073275 None:intergenic
CCGCAAATATGCTCTAACTT+TGG 0.444704 7_2:-71074514 None:intergenic
CAAAGTTAGAGCATATTTGC+GGG 0.456089 7_2:+71074515 Msa1073500:three_prime_UTR
GAATTTCTCCTTATATTGTC+GGG 0.456126 7_2:-71075581 None:intergenic
GGTGTTGCTTTAAGCAAAGA+TGG 0.456261 7_2:+71075452 Msa1073500:three_prime_UTR
TTCACTGATATCCAAGTCAT+TGG 0.463204 7_2:-71074680 None:intergenic
TGGCTTCGTGGACCAAAAGC+TGG 0.463403 7_2:+71075524 Msa1073500:three_prime_UTR
AGTGAAGTGGAAGAGAGAAA+TGG 0.469053 7_2:+71075713 Msa1073500:three_prime_UTR
GGGAAAATATTAGAAATCTT+GGG 0.469300 7_2:+71075659 Msa1073500:three_prime_UTR
TATATTGCTGATGCTTACCT+TGG 0.473507 7_2:+71074580 Msa1073500:three_prime_UTR
ATTTAATTTGCTGTCTTCAA+AGG 0.473528 7_2:+71073242 Msa1073500:five_prime_UTR
GCATGAGAAGAGTGCTAGAA+AGG 0.478094 7_2:-71073324 None:intergenic
AATATAAGGAGAAATTCAAA+TGG 0.478511 7_2:+71075587 Msa1073500:three_prime_UTR
TGCTCTAACTTTGGTGCGAA+TGG 0.480454 7_2:-71074505 None:intergenic
CCGAAGAATTCTGCAGTTCG+AGG 0.480808 7_2:-71075498 None:intergenic
CATATTTGCGGGAGGCCACT+AGG 0.483919 7_2:+71074526 Msa1073500:three_prime_UTR
TTTGATCCAGCAATGTGAAC+AGG 0.486477 7_2:-71073383 None:intergenic
CCATCCGCCACGCCGGTGTA+CGG 0.487653 7_2:-71073491 None:intergenic
TACTACATTGAGGATGTCCT+TGG 0.488098 7_2:-71073300 None:intergenic
GCTATAAAGCTGAGTGGTGA+AGG 0.488363 7_2:+71075638 Msa1073500:three_prime_UTR
CAAGTCATTGGTGAAGTGAA+AGG 0.495058 7_2:-71074668 None:intergenic
CCGTACACCGGCGTGGCGGA+TGG 0.496328 7_2:+71073491 Msa1073500:CDS
ATGCTTAAGGAAAATGTCAC+AGG 0.499468 7_2:-71076058 None:intergenic
TCAGTGGAAATGCCTTATAT+TGG 0.502261 7_2:+71075752 Msa1073500:three_prime_UTR
AAAACTTTGGATTGCATCAG+TGG 0.505405 7_2:+71075736 Msa1073500:three_prime_UTR
AGCTTCTATTGCTAGTTGAG+TGG 0.511069 7_2:-71074635 None:intergenic
AAGTGGGAGGGGAAGGAACG+TGG 0.523034 7_2:+71073524 Msa1073500:CDS
CAATGTAGTGGGACCTACTG+GGG 0.524671 7_2:+71074606 Msa1073500:three_prime_UTR
CCAAAGTTAGAGCATATTTG+CGG 0.526459 7_2:+71074514 Msa1073500:three_prime_UTR
GAAGTGAAGGTCTTGTTAAG+AGG 0.528733 7_2:+71075413 Msa1073500:three_prime_UTR
AAGTCATTGGTGAAGTGAAA+GGG 0.530724 7_2:-71074667 None:intergenic
TGTTCACATTGCTGGATCAA+AGG 0.537126 7_2:+71073385 Msa1073500:CDS
TACCTTGGCCTCAATGTAGT+GGG 0.537777 7_2:+71074595 Msa1073500:three_prime_UTR
GTCCGACGGCTTTGGTGACG+TGG 0.539978 7_2:-71073433 None:intergenic
TTATCAAACCTTAGTCCTAG+TGG 0.561618 7_2:-71074541 None:intergenic
CAATGTGAACAGGTGAAAAG+AGG 0.562529 7_2:-71073373 None:intergenic
CGTCACCAAAGCCGTCGGAC+CGG 0.562729 7_2:+71073436 Msa1073500:CDS
GTCCCACTACATTGAGGCCA+AGG 0.562852 7_2:-71074597 None:intergenic
GGGAGGGGAAGGAACGTGGT+TGG 0.562863 7_2:+71073528 Msa1073500:CDS
CATGGTGAGGGTCCGTACAC+CGG 0.564118 7_2:+71073479 Msa1073500:CDS
CATGAAGAACATCAGTGAAG+TGG 0.569248 7_2:+71075700 Msa1073500:three_prime_UTR
GAAATCTTGGGAGATTGGCA+AGG 0.571629 7_2:+71075671 Msa1073500:three_prime_UTR
TAAGTCAACAAAAGAAGTGA+AGG 0.571883 7_2:+71075400 Msa1073500:three_prime_UTR
TTATCGAAAACAAGACTCTC+CGG 0.573402 7_2:-71073455 None:intergenic
ATATAAGGAGAAATTCAAAT+GGG 0.580818 7_2:+71075588 Msa1073500:three_prime_UTR
TTCTTAGTGGAGACGCAACT+GGG 0.583966 7_2:+71075360 Msa1073500:three_prime_UTR
ACACCGGCGTGGCGGATGGT+CGG 0.585681 7_2:+71073495 Msa1073500:CDS
CAAGCACAGTCTATCAGAGA+AGG 0.594605 7_2:+71074731 Msa1073500:three_prime_UTR
TTACCTTGGCCTCAATGTAG+TGG 0.599466 7_2:+71074594 Msa1073500:three_prime_UTR
AATGTAGTGGGACCTACTGG+GGG 0.601063 7_2:+71074607 Msa1073500:three_prime_UTR
AAATCTTGGGAGATTGGCAA+GGG 0.602246 7_2:+71075672 Msa1073500:three_prime_UTR
CTAGAAAGGTTACTACATTG+AGG 0.603481 7_2:-71073310 None:intergenic
AATCCGACCATCCGCCACGC+CGG 0.605536 7_2:-71073498 None:intergenic
AAAACCATTATACCAATAGA+GGG 0.619284 7_2:+71075810 Msa1073500:three_prime_UTR
CAACTAGCAATAGAAGCTGA+AGG 0.619883 7_2:+71074640 Msa1073500:three_prime_UTR
AACAAGACTCTCCGGTCCGA+CGG 0.620082 7_2:-71073447 None:intergenic
CAGTAGGTCCCACTACATTG+AGG 0.626504 7_2:-71074603 None:intergenic
CTATAAAGCTGAGTGGTGAA+GGG 0.627218 7_2:+71075639 Msa1073500:three_prime_UTR
CGTGGAGTATCTGAGCAGCA+TGG 0.630959 7_2:-71073415 None:intergenic
TATCATAAACATGAACTCCA+AGG 0.639632 7_2:+71073283 Msa1073500:exon
CTCCACGTCACCAAAGCCGT+CGG 0.656986 7_2:+71073431 Msa1073500:CDS
AGTTAGAGCATATTTGCGGG+AGG 0.660243 7_2:+71074518 Msa1073500:three_prime_UTR
TTGGATATCAGTGAAGATGA+AGG 0.668380 7_2:+71074688 Msa1073500:three_prime_UTR
TGCTTAAGGAAAATGTCACA+GGG 0.672988 7_2:-71076057 None:intergenic
GGGTCCGTACACCGGCGTGG+CGG 0.673340 7_2:+71073487 Msa1073500:CDS
TGAGGGTCCGTACACCGGCG+TGG 0.683753 7_2:+71073484 Msa1073500:CDS
TATGATAAACTAAGGAAACG+TGG 0.713699 7_2:-71073267 None:intergenic
GGAGTATCTGAGCAGCATGG+AGG 0.725901 7_2:-71073412 None:intergenic
TCAGCAGCTATAAAGCTGAG+TGG 0.731970 7_2:+71075632 Msa1073500:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTCTTTATTACTATTTTTT+TGG + chr7_2:71073621-71073640 Msa1073500:intron 10.0%
!!! TTCAACATATATATTTTTAA+GGG + chr7_2:71074893-71074912 Msa1073500:intron 10.0%
!! TATTATGTATGAAAAATAAT+AGG + chr7_2:71075956-71075975 Msa1073500:three_prime_UTR 10.0%
!! ATAGGTATAGATATATTTAA+GGG - chr7_2:71073929-71073948 None:intergenic 15.0%
!! TTATGAAAACGATTTATATA+TGG - chr7_2:71073982-71074001 None:intergenic 15.0%
!! TGATAAATAATCTCAATTAA+TGG + chr7_2:71074340-71074359 Msa1073500:intron 15.0%
!!! CTTCAACATATATATTTTTA+AGG + chr7_2:71074892-71074911 Msa1073500:intron 15.0%
!! TTCATGTTTATGATAAACTA+AGG - chr7_2:71073278-71073297 None:intergenic 20.0%
!! CATAGGTATAGATATATTTA+AGG - chr7_2:71073930-71073949 None:intergenic 20.0%
!!! TGCTTTTAAGTTATTTTCAT+AGG - chr7_2:71073947-71073966 None:intergenic 20.0%
!! CTTAAATTAGTCAATCTAAA+CGG + chr7_2:71074108-71074127 Msa1073500:intron 20.0%
!! TTAAATTAGTCAATCTAAAC+GGG + chr7_2:71074109-71074128 Msa1073500:intron 20.0%
!! AAATATAAGTATGAGTTAGA+TGG - chr7_2:71074424-71074443 None:intergenic 20.0%
!! AATAGAGTTAATTGTAGAAA+AGG - chr7_2:71074781-71074800 None:intergenic 20.0%
!!! TATATTTTTAAGGGTATGAT+TGG + chr7_2:71074902-71074921 Msa1073500:intron 20.0%
!!! ATATTTTTAAGGGTATGATT+GGG + chr7_2:71074903-71074922 Msa1073500:intron 20.0%
!! GTACTACTAACAATATATAT+TGG + chr7_2:71074975-71074994 Msa1073500:intron 20.0%
!! CTAAAAATTTGTATTTCACA+AGG - chr7_2:71075041-71075060 None:intergenic 20.0%
!!! TTTAGTTTCCTTAAATTAGA+AGG + chr7_2:71075056-71075075 Msa1073500:intron 20.0%
!! TACAAAATCCTTCTAATTTA+AGG - chr7_2:71075067-71075086 None:intergenic 20.0%
!!! TCTTTTTATATGGCATATTA+TGG - chr7_2:71075279-71075298 None:intergenic 20.0%
!! AATATAAGGAGAAATTCAAA+TGG + chr7_2:71075587-71075606 Msa1073500:three_prime_UTR 20.0%
!! ATATAAGGAGAAATTCAAAT+GGG + chr7_2:71075588-71075607 Msa1073500:three_prime_UTR 20.0%
!! AAACTATAAACACCAATATA+AGG - chr7_2:71075767-71075786 None:intergenic 20.0%
!!! TATATTGGTGTTTATAGTTT+AGG + chr7_2:71075767-71075786 Msa1073500:three_prime_UTR 20.0%
!! CAAAACTGTGAATATTTATA+GGG - chr7_2:71076000-71076019 None:intergenic 20.0%
!! ACAAAACTGTGAATATTTAT+AGG - chr7_2:71076001-71076020 None:intergenic 20.0%
!!! AAGTGTGATTTTATTTTGTA+GGG - chr7_2:71076031-71076050 None:intergenic 20.0%
!!! AAAGTGTGATTTTATTTTGT+AGG - chr7_2:71076032-71076051 None:intergenic 20.0%
!!! ATTTAATTTGCTGTCTTCAA+AGG + chr7_2:71073242-71073261 Msa1073500:five_prime_UTR 25.0%
! TAGGTAATAGTAATACCATT+TGG + chr7_2:71073577-71073596 Msa1073500:intron 25.0%
!! TAAGTAAGTCTTTTAAGCAT+GGG + chr7_2:71073851-71073870 Msa1073500:intron 25.0%
! AATAACTTAAAAGCAGCTTA+TGG + chr7_2:71073952-71073971 Msa1073500:intron 25.0%
! CTTAAAACAGATAGAAAGTT+AGG - chr7_2:71074246-71074265 None:intergenic 25.0%
!!! GTTTTAAGACATTGATAAAC+TGG + chr7_2:71074258-71074277 Msa1073500:intron 25.0%
!!! GATTAGTTGTATGATTTTCA+AGG + chr7_2:71074467-71074486 Msa1073500:intron 25.0%
! CTAAGGTTTGATAAGAAAAA+TGG + chr7_2:71074550-71074569 Msa1073500:three_prime_UTR 25.0%
! TTTACGAAATATGCATGAAA+AGG + chr7_2:71074848-71074867 Msa1073500:intron 25.0%
! TTGGATTTGAAGATTTATCT+CGG + chr7_2:71074994-71075013 Msa1073500:intron 25.0%
! GAAGAAGTAAAAGAAAAGAA+TGG - chr7_2:71075123-71075142 None:intergenic 25.0%
!! CATCACTCATTCTTTTTATA+TGG - chr7_2:71075289-71075308 None:intergenic 25.0%
! CATATAAAAAGAATGAGTGA+TGG + chr7_2:71075287-71075306 Msa1073500:intron 25.0%
! TGATGGAATGATTTATATGT+TGG + chr7_2:71075304-71075323 Msa1073500:intron 25.0%
! AATATTCTTGTACTTCTTAG+TGG + chr7_2:71075347-71075366 Msa1073500:three_prime_UTR 25.0%
! TGAATTTCTCCTTATATTGT+CGG - chr7_2:71075585-71075604 None:intergenic 25.0%
! AGGGAAAATATTAGAAATCT+TGG + chr7_2:71075658-71075677 Msa1073500:three_prime_UTR 25.0%
! GGGAAAATATTAGAAATCTT+GGG + chr7_2:71075659-71075678 Msa1073500:three_prime_UTR 25.0%
!! TCTATTGGTATAATGGTTTT+AGG - chr7_2:71075810-71075829 None:intergenic 25.0%
! TAAAACCATTATACCAATAG+AGG + chr7_2:71075809-71075828 Msa1073500:three_prime_UTR 25.0%
! AAAACCATTATACCAATAGA+GGG + chr7_2:71075810-71075829 Msa1073500:three_prime_UTR 25.0%
!! ACATTTTCCTTAAGCATTTT+AGG + chr7_2:71076064-71076083 Msa1073500:three_prime_UTR 25.0%
!! CATTTTCCTTAAGCATTTTA+GGG + chr7_2:71076065-71076084 Msa1073500:three_prime_UTR 25.0%
TATGATAAACTAAGGAAACG+TGG - chr7_2:71073270-71073289 None:intergenic 30.0%
TATCATAAACATGAACTCCA+AGG + chr7_2:71073283-71073302 Msa1073500:exon 30.0%
!!! AGTCTTGTTTTCGATAAACA+TGG + chr7_2:71073461-71073480 Msa1073500:CDS 30.0%
TGCATGCATATTTGATATGT+TGG + chr7_2:71073734-71073753 Msa1073500:intron 30.0%
GCATGCATATTTGATATGTT+GGG + chr7_2:71073735-71073754 Msa1073500:intron 30.0%
CATGCATATTTGATATGTTG+GGG + chr7_2:71073736-71073755 Msa1073500:intron 30.0%
TTGCTAAACTAGTAGAAGTA+AGG + chr7_2:71073817-71073836 Msa1073500:intron 30.0%
! CTAAGTAAGTCTTTTAAGCA+TGG + chr7_2:71073850-71073869 Msa1073500:intron 30.0%
! AAGTAAGTCTTTTAAGCATG+GGG + chr7_2:71073852-71073871 Msa1073500:intron 30.0%
! ATCGTTTTCATAAGCTATTG+TGG + chr7_2:71073989-71074008 Msa1073500:intron 30.0%
!!! TTAATGGCTATTTTTTTCCG+AGG + chr7_2:71074356-71074375 Msa1073500:intron 30.0%
TAATTGTAGAAAAGGAGGTA+AGG - chr7_2:71074773-71074792 None:intergenic 30.0%
AGAGTTAATTGTAGAAAAGG+AGG - chr7_2:71074778-71074797 None:intergenic 30.0%
TAAGTCAACAAAAGAAGTGA+AGG + chr7_2:71075400-71075419 Msa1073500:three_prime_UTR 30.0%
GAATTTCTCCTTATATTGTC+GGG - chr7_2:71075584-71075603 None:intergenic 30.0%
! AAATTCAAATGGGCAGTTTT+GGG + chr7_2:71075598-71075617 Msa1073500:three_prime_UTR 30.0%
TATTAGAAATCTTGGGAGAT+TGG + chr7_2:71075666-71075685 Msa1073500:three_prime_UTR 30.0%
AAGAGAGAAATGGAAAACTT+TGG + chr7_2:71075723-71075742 Msa1073500:three_prime_UTR 30.0%
CAAACAGAGTAGAATGATAT+AGG + chr7_2:71075842-71075861 Msa1073500:three_prime_UTR 30.0%
AGTAGAATGATATAGGTGAT+AGG + chr7_2:71075849-71075868 Msa1073500:three_prime_UTR 30.0%
TTTAGTCCCTAAAATGCTTA+AGG - chr7_2:71076074-71076093 None:intergenic 30.0%
!! AAAGAGAAAGTGTCGTTTGA+AGG - chr7_2:71073221-71073240 None:intergenic 35.0%
CTAGAAAGGTTACTACATTG+AGG - chr7_2:71073313-71073332 None:intergenic 35.0%
TTATCGAAAACAAGACTCTC+CGG - chr7_2:71073458-71073477 None:intergenic 35.0%
! TGTTTTCGATAAACATGGTG+AGG + chr7_2:71073466-71073485 Msa1073500:CDS 35.0%
! GTTTTCGATAAACATGGTGA+GGG + chr7_2:71073467-71073486 Msa1073500:CDS 35.0%
TGAAACGTGAAAACACCAAA+TGG - chr7_2:71073595-71073614 None:intergenic 35.0%
CAACACTAAATACGAAGAAG+TGG - chr7_2:71073788-71073807 None:intergenic 35.0%
CTAGTAGAAGTAAGGTTTGT+AGG + chr7_2:71073825-71073844 Msa1073500:intron 35.0%
AAGCATGGGGTCTTAAAAAT+CGG + chr7_2:71073865-71073884 Msa1073500:intron 35.0%
!!! CCTCTTGCCTTTTAGAATAA+GGG - chr7_2:71074135-71074154 None:intergenic 35.0%
! CCTTATTCTAAAAGGCAAGA+GGG + chr7_2:71074133-71074152 Msa1073500:intron 35.0%
! TCTCTGCCTTTAGTTTCAAA+CGG + chr7_2:71074183-71074202 Msa1073500:intron 35.0%
! CTGAAACCGTTTGAAACTAA+AGG - chr7_2:71074192-71074211 None:intergenic 35.0%
! AACCTTGTTGTACATATCCT+CGG - chr7_2:71074376-71074395 None:intergenic 35.0%
!! TTGTATGATTTTCAAGGTCG+AGG + chr7_2:71074473-71074492 Msa1073500:intron 35.0%
CCAAAGTTAGAGCATATTTG+CGG + chr7_2:71074514-71074533 Msa1073500:three_prime_UTR 35.0%
CAAAGTTAGAGCATATTTGC+GGG + chr7_2:71074515-71074534 Msa1073500:three_prime_UTR 35.0%
TTATCAAACCTTAGTCCTAG+TGG - chr7_2:71074544-71074563 None:intergenic 35.0%
TATATTGCTGATGCTTACCT+TGG + chr7_2:71074580-71074599 Msa1073500:three_prime_UTR 35.0%
AAGTCATTGGTGAAGTGAAA+GGG - chr7_2:71074670-71074689 None:intergenic 35.0%
TTCACTGATATCCAAGTCAT+TGG - chr7_2:71074683-71074702 None:intergenic 35.0%
TTGGATATCAGTGAAGATGA+AGG + chr7_2:71074688-71074707 Msa1073500:three_prime_UTR 35.0%
TAGAGTCTGTTCAAGAGTTT+AGG - chr7_2:71075177-71075196 None:intergenic 35.0%
TTGCTTAAAGCAACACCATT+AGG - chr7_2:71075449-71075468 None:intergenic 35.0%
! AATACTTTTGCTGATCTTCC+AGG + chr7_2:71075554-71075573 Msa1073500:three_prime_UTR 35.0%
! GAAATTCAAATGGGCAGTTT+TGG + chr7_2:71075597-71075616 Msa1073500:three_prime_UTR 35.0%
AAAACTTTGGATTGCATCAG+TGG + chr7_2:71075736-71075755 Msa1073500:three_prime_UTR 35.0%
TCAGTGGAAATGCCTTATAT+TGG + chr7_2:71075752-71075771 Msa1073500:three_prime_UTR 35.0%
TTCTCCCTCTATTGGTATAA+TGG - chr7_2:71075817-71075836 None:intergenic 35.0%
! TTGTTTCTTTCTCCCTCTAT+TGG - chr7_2:71075825-71075844 None:intergenic 35.0%
TGCTTAAGGAAAATGTCACA+GGG - chr7_2:71076060-71076079 None:intergenic 35.0%
ATGCTTAAGGAAAATGTCAC+AGG - chr7_2:71076061-71076080 None:intergenic 35.0%
TTAGGGACTAAAAATGCTGA+TGG + chr7_2:71076082-71076101 Msa1073500:three_prime_UTR 35.0%
TACTACATTGAGGATGTCCT+TGG - chr7_2:71073303-71073322 None:intergenic 40.0%
!! CAGGTGAAAAGAGGTTTTGT+GGG - chr7_2:71073367-71073386 None:intergenic 40.0%
! ACAGGTGAAAAGAGGTTTTG+TGG - chr7_2:71073368-71073387 None:intergenic 40.0%
CAATGTGAACAGGTGAAAAG+AGG - chr7_2:71073376-71073395 None:intergenic 40.0%
! TTTTCACCTGTTCACATTGC+TGG + chr7_2:71073377-71073396 Msa1073500:CDS 40.0%
TTTGATCCAGCAATGTGAAC+AGG - chr7_2:71073386-71073405 None:intergenic 40.0%
TGTTCACATTGCTGGATCAA+AGG + chr7_2:71073385-71073404 Msa1073500:CDS 40.0%
! TTGCTGTCACGAGTTCTAAT+AGG + chr7_2:71073558-71073577 Msa1073500:CDS 40.0%
CATGCAGTTTAACACTTTCG+AGG - chr7_2:71073720-71073739 None:intergenic 40.0%
AAGAAGTGGTCGATGAATTG+AGG - chr7_2:71073774-71073793 None:intergenic 40.0%
AAACGGGCCCTTATTCTAAA+AGG + chr7_2:71074125-71074144 Msa1073500:intron 40.0%
! CCCTTATTCTAAAAGGCAAG+AGG + chr7_2:71074132-71074151 Msa1073500:intron 40.0%
!!! CCCTCTTGCCTTTTAGAATA+AGG - chr7_2:71074136-71074155 None:intergenic 40.0%
TTTGTGAATGCAAGCAAGCA+TGG + chr7_2:71074217-71074236 Msa1073500:intron 40.0%
TTCCGAGGATATGTACAACA+AGG + chr7_2:71074371-71074390 Msa1073500:intron 40.0%
CCGCAAATATGCTCTAACTT+TGG - chr7_2:71074517-71074536 None:intergenic 40.0%
AGCTTCTATTGCTAGTTGAG+TGG - chr7_2:71074638-71074657 None:intergenic 40.0%
CAACTAGCAATAGAAGCTGA+AGG + chr7_2:71074640-71074659 Msa1073500:three_prime_UTR 40.0%
CAAGTCATTGGTGAAGTGAA+AGG - chr7_2:71074671-71074690 None:intergenic 40.0%
CTTTCACTTCACCAATGACT+TGG + chr7_2:71074669-71074688 Msa1073500:three_prime_UTR 40.0%
! AAGGGTATGATTGGGAGATA+AGG + chr7_2:71074911-71074930 Msa1073500:intron 40.0%
TCTGTTCAAGAGTTTAGGAG+GGG - chr7_2:71075172-71075191 None:intergenic 40.0%
GTCTGTTCAAGAGTTTAGGA+GGG - chr7_2:71075173-71075192 None:intergenic 40.0%
AGTCTGTTCAAGAGTTTAGG+AGG - chr7_2:71075174-71075193 None:intergenic 40.0%
! ATTTTGCCTGCAAACGAAAG+TGG - chr7_2:71075330-71075349 None:intergenic 40.0%
!! GAAGTGAAGGTCTTGTTAAG+AGG + chr7_2:71075413-71075432 Msa1073500:three_prime_UTR 40.0%
!! AGAGGACTTGCTTTTCCTAA+TGG + chr7_2:71075431-71075450 Msa1073500:three_prime_UTR 40.0%
!! GGTGTTGCTTTAAGCAAAGA+TGG + chr7_2:71075452-71075471 Msa1073500:three_prime_UTR 40.0%
!!! GTATTGACTTTGCCAGCTTT+TGG - chr7_2:71075539-71075558 None:intergenic 40.0%
CTTATATTGTCGGGAAAACC+TGG - chr7_2:71075575-71075594 None:intergenic 40.0%
! CAGGTTTTCCCGACAATATA+AGG + chr7_2:71075573-71075592 Msa1073500:three_prime_UTR 40.0%
CTATAAAGCTGAGTGGTGAA+GGG + chr7_2:71075639-71075658 Msa1073500:three_prime_UTR 40.0%
AAATCTTGGGAGATTGGCAA+GGG + chr7_2:71075672-71075691 Msa1073500:three_prime_UTR 40.0%
CACTTCACTGATGTTCTTCA+TGG - chr7_2:71075702-71075721 None:intergenic 40.0%
CATGAAGAACATCAGTGAAG+TGG + chr7_2:71075700-71075719 Msa1073500:three_prime_UTR 40.0%
AGTGAAGTGGAAGAGAGAAA+TGG + chr7_2:71075713-71075732 Msa1073500:three_prime_UTR 40.0%
!! GCATGAGAAGAGTGCTAGAA+AGG - chr7_2:71073327-71073346 None:intergenic 45.0%
!! GAGGTTTTGTGGGTTGAATG+AGG - chr7_2:71073357-71073376 None:intergenic 45.0%
!!! GGATGGTCGGATTTTGAAGT+GGG + chr7_2:71073508-71073527 Msa1073500:CDS 45.0%
! TGCTCTAACTTTGGTGCGAA+TGG - chr7_2:71074508-71074527 None:intergenic 45.0%
AGTTAGAGCATATTTGCGGG+AGG + chr7_2:71074518-71074537 Msa1073500:three_prime_UTR 45.0%
TTACCTTGGCCTCAATGTAG+TGG + chr7_2:71074594-71074613 Msa1073500:three_prime_UTR 45.0%
TACCTTGGCCTCAATGTAGT+GGG + chr7_2:71074595-71074614 Msa1073500:three_prime_UTR 45.0%
! TCAATGTAGTGGGACCTACT+GGG + chr7_2:71074605-71074624 Msa1073500:three_prime_UTR 45.0%
CAAGCACAGTCTATCAGAGA+AGG + chr7_2:71074731-71074750 Msa1073500:three_prime_UTR 45.0%
TTCTTAGTGGAGACGCAACT+GGG + chr7_2:71075360-71075379 Msa1073500:three_prime_UTR 45.0%
CCTCGAACTGCAGAATTCTT+CGG + chr7_2:71075498-71075517 Msa1073500:three_prime_UTR 45.0%
ACTGCAGAATTCTTCGGCTT+TGG + chr7_2:71075504-71075523 Msa1073500:three_prime_UTR 45.0%
TCAGCAGCTATAAAGCTGAG+TGG + chr7_2:71075632-71075651 Msa1073500:three_prime_UTR 45.0%
GCTATAAAGCTGAGTGGTGA+AGG + chr7_2:71075638-71075657 Msa1073500:three_prime_UTR 45.0%
GAAATCTTGGGAGATTGGCA+AGG + chr7_2:71075671-71075690 Msa1073500:three_prime_UTR 45.0%
!! CGGATGGTCGGATTTTGAAG+TGG + chr7_2:71073507-71073526 Msa1073500:CDS 50.0%
!!! TGGTCGGATTTTGAAGTGGG+AGG + chr7_2:71073511-71073530 Msa1073500:CDS 50.0%
!!! GGTCGGATTTTGAAGTGGGA+GGG + chr7_2:71073512-71073531 Msa1073500:CDS 50.0%
!!! GTCGGATTTTGAAGTGGGAG+GGG + chr7_2:71073513-71073532 Msa1073500:CDS 50.0%
!!! GATTTTGAAGTGGGAGGGGA+AGG + chr7_2:71073517-71073536 Msa1073500:CDS 50.0%
CAGTAGGTCCCACTACATTG+AGG - chr7_2:71074606-71074625 None:intergenic 50.0%
! CTCAATGTAGTGGGACCTAC+TGG + chr7_2:71074604-71074623 Msa1073500:three_prime_UTR 50.0%
! CAATGTAGTGGGACCTACTG+GGG + chr7_2:71074606-71074625 Msa1073500:three_prime_UTR 50.0%
! AATGTAGTGGGACCTACTGG+GGG + chr7_2:71074607-71074626 Msa1073500:three_prime_UTR 50.0%
AGTTTAGGAGGGGAGAGAAG+AGG - chr7_2:71075162-71075181 None:intergenic 50.0%
! TGTTGGCCACTTTCGTTTGC+AGG + chr7_2:71075321-71075340 Msa1073500:intron 50.0%
CTTCTTAGTGGAGACGCAAC+TGG + chr7_2:71075359-71075378 Msa1073500:three_prime_UTR 50.0%
CCGAAGAATTCTGCAGTTCG+AGG - chr7_2:71075501-71075520 None:intergenic 50.0%
! ATTCTTCGGCTTTGGCTTCG+TGG + chr7_2:71075512-71075531 Msa1073500:three_prime_UTR 50.0%
! GGAGTATCTGAGCAGCATGG+AGG - chr7_2:71073415-71073434 None:intergenic 55.0%
! CGTGGAGTATCTGAGCAGCA+TGG - chr7_2:71073418-71073437 None:intergenic 55.0%
AACAAGACTCTCCGGTCCGA+CGG - chr7_2:71073450-71073469 None:intergenic 55.0%
CATATTTGCGGGAGGCCACT+AGG + chr7_2:71074526-71074545 Msa1073500:three_prime_UTR 55.0%
GTCCCACTACATTGAGGCCA+AGG - chr7_2:71074600-71074619 None:intergenic 55.0%
TGAGTGGCTAAACCCCCAGT+AGG - chr7_2:71074622-71074641 None:intergenic 55.0%
TGGCTTCGTGGACCAAAAGC+TGG + chr7_2:71075524-71075543 Msa1073500:three_prime_UTR 55.0%
CTCCACGTCACCAAAGCCGT+CGG + chr7_2:71073431-71073450 Msa1073500:CDS 60.0%
CATGGTGAGGGTCCGTACAC+CGG + chr7_2:71073479-71073498 Msa1073500:CDS 60.0%
AAGTGGGAGGGGAAGGAACG+TGG + chr7_2:71073524-71073543 Msa1073500:CDS 60.0%
!! GTCCGACGGCTTTGGTGACG+TGG - chr7_2:71073436-71073455 None:intergenic 65.0%
CGTCACCAAAGCCGTCGGAC+CGG + chr7_2:71073436-71073455 Msa1073500:CDS 65.0%
ACTCTCCGGTCCGACGGCTT+TGG - chr7_2:71073444-71073463 None:intergenic 65.0%
AATCCGACCATCCGCCACGC+CGG - chr7_2:71073501-71073520 None:intergenic 65.0%
GGGAGGGGAAGGAACGTGGT+TGG + chr7_2:71073528-71073547 Msa1073500:CDS 65.0%
GCGGGAGGCCACTAGGACTA+AGG + chr7_2:71074533-71074552 Msa1073500:three_prime_UTR 65.0%
TGAGGGTCCGTACACCGGCG+TGG + chr7_2:71073484-71073503 Msa1073500:CDS 70.0%
CCATCCGCCACGCCGGTGTA+CGG - chr7_2:71073494-71073513 None:intergenic 70.0%
!! ACACCGGCGTGGCGGATGGT+CGG + chr7_2:71073495-71073514 Msa1073500:CDS 70.0%
GGGTCCGTACACCGGCGTGG+CGG + chr7_2:71073487-71073506 Msa1073500:CDS 75.0%
! CCGTACACCGGCGTGGCGGA+TGG + chr7_2:71073491-71073510 Msa1073500:CDS 75.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 71073215 71076113 71073215 ID=Msa1073500;Name=Msa1073500
chr7_2 mRNA 71073215 71076113 71073215 ID=Msa1073500-mRNA-1;Parent=Msa1073500;Name=Msa1073500-mRNA-1;_AED=0.04;_eAED=0.04;_QI=78|0.5|0.66|1|0.5|0.66|3|1029|96
chr7_2 exon 71073215 71073583 71073215 ID=Msa1073500-mRNA-1:exon:16070;Parent=Msa1073500-mRNA-1
chr7_2 exon 71074495 71074752 71074495 ID=Msa1073500-mRNA-1:exon:16071;Parent=Msa1073500-mRNA-1
chr7_2 exon 71075343 71076113 71075343 ID=Msa1073500-mRNA-1:exon:16072;Parent=Msa1073500-mRNA-1
chr7_2 five_prime_UTR 71073215 71073292 71073215 ID=Msa1073500-mRNA-1:five_prime_utr;Parent=Msa1073500-mRNA-1
chr7_2 CDS 71073293 71073583 71073293 ID=Msa1073500-mRNA-1:cds;Parent=Msa1073500-mRNA-1
chr7_2 three_prime_UTR 71074495 71074752 71074495 ID=Msa1073500-mRNA-1:three_prime_utr;Parent=Msa1073500-mRNA-1
chr7_2 three_prime_UTR 71075343 71076113 71075343 ID=Msa1073500-mRNA-1:three_prime_utr;Parent=Msa1073500-mRNA-1
Gene Sequence

>Msa1073500

ATGAACTCCAAGGACATCCTCAATGTAGTAACCTTTCTAGCACTCTTCTCATGCATCTTCGCCTCATTCAACCCACAAAACCTCTTTTCACCTGTTCACATTGCTGGATCAAAGGACAGCCTCCATGCTGCTCAGATACTCCACGTCACCAAAGCCGTCGGACCGGAGAGTCTTGTTTTCGATAAACATGGTGAGGGTCCGTACACCGGCGTGGCGGATGGTCGGATTTTGAAGTGGGAGGGGAAGGAACGTGGTTGGACTGAATTTGCTGTCACGAGTTCTAATAGGTAA

Protein sequence

>Msa1073500

MNSKDILNVVTFLALFSCIFASFNPQNLFSPVHIAGSKDSLHAAQILHVTKAVGPESLVFDKHGEGPYTGVADGRILKWEGKERGWTEFAVTSSNR*