Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1114600 | XP_003625126.1 | 98.925 | 93 | 1 | 0 | 1 | 93 | 1 | 93 | 1.29e-61 | 192 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1114600 | sp|Q9FFS4|DDA1_ARATH | 64.516 | 93 | 33 | 0 | 1 | 93 | 1 | 93 | 1.14e-36 | 122 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1114600 | G7KTG6 | 98.925 | 93 | 1 | 0 | 1 | 93 | 1 | 93 | 6.16e-62 | 192 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0475580 | Msa1114600 | 0.805544 | 1.268501e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1114600 | MtrunA17_Chr7g0257281 | 98.925 | 93 | 1 | 0 | 1 | 93 | 1 | 93 | 1.19e-65 | 192 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1114600 | AT5G41560.1 | 64.516 | 93 | 33 | 0 | 1 | 93 | 1 | 93 | 1.16e-37 | 122 |
| Msa1114600 | AT5G41560.2 | 60.938 | 64 | 25 | 0 | 30 | 93 | 1 | 64 | 4.99e-21 | 79.3 |
Find 43 sgRNAs with CRISPR-Local
Find 214 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCATCCATGTTCTGGTATT+AGG | 0.255872 | 7_3:-61449895 | None:intergenic |
| GGTTGCTTGCATCCATGTTC+TGG | 0.299410 | 7_3:-61449902 | None:intergenic |
| ATGAATAATCACCATCCTTT+TGG | 0.300639 | 7_3:+61446736 | Msa1114600:five_prime_UTR |
| CAATTCATGGATTCTGTACT+TGG | 0.318829 | 7_3:+61446980 | Msa1114600:exon |
| CATTCTGATAAATATGTCTT+AGG | 0.351968 | 7_3:-61449711 | None:intergenic |
| TGCAAATAGGTAGCAATTCA+TGG | 0.353398 | 7_3:+61446967 | Msa1114600:intron |
| ATTAGTTATTGAGATCTCTA+TGG | 0.362957 | 7_3:-61446838 | None:intergenic |
| ACAATAACTTACAGAAGAAC+TGG | 0.393287 | 7_3:-61447059 | None:intergenic |
| CGAATCTGACTGAAATTATG+AGG | 0.409853 | 7_3:-61447022 | None:intergenic |
| CAGTTGTTGTATATATTGAT+TGG | 0.427962 | 7_3:-61450098 | None:intergenic |
| GACATATTTATCAGAATGCT+CGG | 0.446618 | 7_3:+61449716 | Msa1114600:CDS |
| TTATCAGAATGCTCGGGAAA+AGG | 0.462157 | 7_3:+61449723 | Msa1114600:CDS |
| TTGTATATATTGATTGGTGG+GGG | 0.482332 | 7_3:-61450092 | None:intergenic |
| TTGTTGTATATATTGATTGG+TGG | 0.484374 | 7_3:-61450095 | None:intergenic |
| TTATTAGTCCGCTACAGACT+TGG | 0.485609 | 7_3:+61450049 | Msa1114600:three_prime_UTR |
| CTCTTGTCACTACCTTGATC+AGG | 0.492408 | 7_3:-61449375 | None:intergenic |
| AATGATTGTAACTACATAGC+TGG | 0.493454 | 7_3:+61446763 | Msa1114600:five_prime_UTR |
| TCAAACAAGCACCAAACTCT+TGG | 0.499027 | 7_3:-61450014 | None:intergenic |
| TGTTGTATATATTGATTGGT+GGG | 0.515979 | 7_3:-61450094 | None:intergenic |
| GTTGTATATATTGATTGGTG+GGG | 0.521912 | 7_3:-61450093 | None:intergenic |
| TGACAATTGCATGCACTAGT+TGG | 0.529335 | 7_3:-61449954 | None:intergenic |
| TACCTTGATCAGGTGGTGGA+AGG | 0.537453 | 7_3:-61449365 | None:intergenic |
| ACCCTTCCACCACCTGATCA+AGG | 0.548725 | 7_3:+61449363 | Msa1114600:CDS |
| GTTGGTCAATGAACACTGTC+AGG | 0.552443 | 7_3:-61449936 | None:intergenic |
| AACATGGATGCAAGCAACCT+AGG | 0.559912 | 7_3:+61449906 | Msa1114600:CDS |
| GTTAGATAATATTACCCTTG+TGG | 0.564608 | 7_3:-61446872 | None:intergenic |
| ACCTTGATCAGGTGGTGGAA+GGG | 0.570506 | 7_3:-61449364 | None:intergenic |
| AAATTATGAGGGTTATAAGA+TGG | 0.572770 | 7_3:-61447010 | None:intergenic |
| ACATGGATGCAAGCAACCTA+GGG | 0.574510 | 7_3:+61449907 | Msa1114600:CDS |
| ACATATTTATCAGAATGCTC+GGG | 0.578265 | 7_3:+61449717 | Msa1114600:CDS |
| CACTGTCAGGTGGAAACCCT+AGG | 0.583513 | 7_3:-61449923 | None:intergenic |
| TCACTACCTTGATCAGGTGG+TGG | 0.587344 | 7_3:-61449369 | None:intergenic |
| TTGTCACTACCTTGATCAGG+TGG | 0.607438 | 7_3:-61449372 | None:intergenic |
| GGAAGGGTTCTGTCGTGAGT+AGG | 0.622729 | 7_3:-61449348 | None:intergenic |
| GAAGAACTGGAAGGATCTGA+AGG | 0.631011 | 7_3:-61447046 | None:intergenic |
| GAATCTGACTGAAATTATGA+GGG | 0.634955 | 7_3:-61447021 | None:intergenic |
| GGGTTCTGTCGTGAGTAGGA+TGG | 0.635233 | 7_3:-61449344 | None:intergenic |
| TAATTGATAGTTACTCCACA+AGG | 0.637697 | 7_3:+61446857 | Msa1114600:five_prime_UTR |
| TACACACTCCAAGTCTGTAG+CGG | 0.654775 | 7_3:-61450057 | None:intergenic |
| GGTAACCTAATACCAGAACA+TGG | 0.658963 | 7_3:+61449890 | Msa1114600:CDS |
| TAACTTACAGAAGAACTGGA+AGG | 0.671616 | 7_3:-61447055 | None:intergenic |
| GGTCAATGAACACTGTCAGG+TGG | 0.695602 | 7_3:-61449933 | None:intergenic |
| AATTGATAGTTACTCCACAA+GGG | 0.711271 | 7_3:+61446858 | Msa1114600:five_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CTATATTTTGATAAAATTAA+AGG | - | chr7_3:61447091-61447110 | None:intergenic | 10.0% |
| !!! | AACATATTAAAATTTTGAAT+TGG | - | chr7_3:61447312-61447331 | None:intergenic | 10.0% |
| !!! | TATTTTAAAATAAGTGTTTT+CGG | + | chr7_3:61449185-61449204 | Msa1114600:intron | 10.0% |
| !!! | ATATAGTTATTTGATAATCT+TGG | + | chr7_3:61447105-61447124 | Msa1114600:intron | 15.0% |
| !!! | ATTTTTATCAATTGATGTTT+TGG | + | chr7_3:61447880-61447899 | Msa1114600:intron | 15.0% |
| !! | AAAATTGATACTGTAAAATT+TGG | + | chr7_3:61448551-61448570 | Msa1114600:intron | 15.0% |
| !! | TATGTTAACAAAATTATTGA+TGG | + | chr7_3:61448971-61448990 | Msa1114600:intron | 15.0% |
| !! | ATGTTAACAAAATTATTGAT+GGG | + | chr7_3:61448972-61448991 | Msa1114600:intron | 15.0% |
| !!! | ATTTTAAAATAAGTGTTTTC+GGG | + | chr7_3:61449186-61449205 | Msa1114600:intron | 15.0% |
| !!! | CTTATTCTTTTGATTTATTT+GGG | + | chr7_3:61449613-61449632 | Msa1114600:intron | 15.0% |
| !!! | TTACAATCATTTTTACCAAA+AGG | - | chr7_3:61446754-61446773 | None:intergenic | 20.0% |
| !! | ATTAGCAATATAAAAAACAC+AGG | - | chr7_3:61447190-61447209 | None:intergenic | 20.0% |
| !!! | TTTATAAAATTGACTTTGCT+TGG | + | chr7_3:61447827-61447846 | Msa1114600:intron | 20.0% |
| !!! | AACTAGAAATATTAGCTTTT+AGG | + | chr7_3:61447970-61447989 | Msa1114600:intron | 20.0% |
| !!! | AGTTTAAAACTTTTCAAACA+TGG | + | chr7_3:61448480-61448499 | Msa1114600:intron | 20.0% |
| !! | AGACAAATAAGTATAATTCT+AGG | - | chr7_3:61448659-61448678 | None:intergenic | 20.0% |
| !!! | TCTGAAAACAACTAATTTTA+TGG | - | chr7_3:61448768-61448787 | None:intergenic | 20.0% |
| !! | TGTTAACAAAATTATTGATG+GGG | + | chr7_3:61448973-61448992 | Msa1114600:intron | 20.0% |
| !! | CTAAGAAGCTTAAATATAAA+AGG | + | chr7_3:61449022-61449041 | Msa1114600:intron | 20.0% |
| !!! | ACAAGTTGAATAAGAAAAAA+CGG | - | chr7_3:61449217-61449236 | None:intergenic | 20.0% |
| !! | CCAAATAAATCAAAAGAATA+AGG | - | chr7_3:61449615-61449634 | None:intergenic | 20.0% |
| !!! | CCTTATTCTTTTGATTTATT+TGG | + | chr7_3:61449612-61449631 | Msa1114600:intron | 20.0% |
| !!! | TTATTTTATTACCAAGAGTT+TGG | + | chr7_3:61450003-61450022 | Msa1114600:three_prime_UTR | 20.0% |
| !!! | AATCATTTTTACCAAAAGGA+TGG | - | chr7_3:61446750-61446769 | None:intergenic | 25.0% |
| ! | ATTAGTTATTGAGATCTCTA+TGG | - | chr7_3:61446841-61446860 | None:intergenic | 25.0% |
| ! | AAATTATGAGGGTTATAAGA+TGG | - | chr7_3:61447013-61447032 | None:intergenic | 25.0% |
| ! | CTAATTAAACCTTAAAAGAC+CGG | - | chr7_3:61447287-61447306 | None:intergenic | 25.0% |
| !!! | TTAGTTTGTTAAGAATGTGT+TGG | + | chr7_3:61447431-61447450 | Msa1114600:intron | 25.0% |
| !! | AATACTGACTATAACTCTTA+GGG | - | chr7_3:61447692-61447711 | None:intergenic | 25.0% |
| !! | TAATACTGACTATAACTCTT+AGG | - | chr7_3:61447693-61447712 | None:intergenic | 25.0% |
| !!! | CTTTTAGGTAGATTGATTTT+GGG | + | chr7_3:61447985-61448004 | Msa1114600:intron | 25.0% |
| !!! | TTTTAGGTAGATTGATTTTG+GGG | + | chr7_3:61447986-61448005 | Msa1114600:intron | 25.0% |
| ! | AATCTAGTCAAATTTGATTC+TGG | + | chr7_3:61448057-61448076 | Msa1114600:intron | 25.0% |
| !!! | GTTTGTTTTGTTTTATCACA+TGG | + | chr7_3:61448269-61448288 | Msa1114600:intron | 25.0% |
| !! | TTAGAAGATATCCTTTTCAT+TGG | + | chr7_3:61448415-61448434 | Msa1114600:intron | 25.0% |
| ! | GTTAAGTTATTCCAATGAAA+AGG | - | chr7_3:61448429-61448448 | None:intergenic | 25.0% |
| ! | AATGAAATGAGAAGTAACTA+AGG | - | chr7_3:61448529-61448548 | None:intergenic | 25.0% |
| ! | AATTTATCTAAGCTACAATG+TGG | - | chr7_3:61448586-61448605 | None:intergenic | 25.0% |
| ! | TCAATAATAAAATATCTCGC+TGG | + | chr7_3:61448685-61448704 | Msa1114600:intron | 25.0% |
| !! | AAACAACTAATTTTATGGCA+AGG | - | chr7_3:61448763-61448782 | None:intergenic | 25.0% |
| !! | ATTTTGTTAACATAAACGCA+AGG | - | chr7_3:61448965-61448984 | None:intergenic | 25.0% |
| ! | AGGTAATCCATAAAATGTTT+CGG | - | chr7_3:61449253-61449272 | None:intergenic | 25.0% |
| ! | AGCAAATGAAATGTATGATT+AGG | - | chr7_3:61449273-61449292 | None:intergenic | 25.0% |
| ! | CATTCTGATAAATATGTCTT+AGG | - | chr7_3:61449714-61449733 | None:intergenic | 25.0% |
| !! | TGTTGTATATATTGATTGGT+GGG | - | chr7_3:61450097-61450116 | None:intergenic | 25.0% |
| !! | TTGTTGTATATATTGATTGG+TGG | - | chr7_3:61450098-61450117 | None:intergenic | 25.0% |
| ! | CAGTTGTTGTATATATTGAT+TGG | - | chr7_3:61450101-61450120 | None:intergenic | 25.0% |
| ! | ATGAATAATCACCATCCTTT+TGG | + | chr7_3:61446736-61446755 | Msa1114600:five_prime_UTR | 30.0% |
| AATGATTGTAACTACATAGC+TGG | + | chr7_3:61446763-61446782 | Msa1114600:five_prime_UTR | 30.0% | |
| !!! | TCTTTTTTCTCATGTTGAAG+AGG | + | chr7_3:61446807-61446826 | Msa1114600:five_prime_UTR | 30.0% |
| ! | TAATTGATAGTTACTCCACA+AGG | + | chr7_3:61446857-61446876 | Msa1114600:five_prime_UTR | 30.0% |
| ! | AATTGATAGTTACTCCACAA+GGG | + | chr7_3:61446858-61446877 | Msa1114600:five_prime_UTR | 30.0% |
| GTTAGATAATATTACCCTTG+TGG | - | chr7_3:61446875-61446894 | None:intergenic | 30.0% | |
| GAATCTGACTGAAATTATGA+GGG | - | chr7_3:61447024-61447043 | None:intergenic | 30.0% | |
| ACAATAACTTACAGAAGAAC+TGG | - | chr7_3:61447062-61447081 | None:intergenic | 30.0% | |
| !!! | CGGTCTTTTAAGGTTTAATT+AGG | + | chr7_3:61447285-61447304 | Msa1114600:intron | 30.0% |
| TTAAGAATGTGTTGGATTGA+GGG | + | chr7_3:61447439-61447458 | Msa1114600:intron | 30.0% | |
| AGTCAGTATTAAGACTTAAG+AGG | + | chr7_3:61447702-61447721 | Msa1114600:intron | 30.0% | |
| ! | TTAGCAAGAGTATAAGAACT+TGG | + | chr7_3:61447735-61447754 | Msa1114600:intron | 30.0% |
| !! | GCTAATATTTCTAGTTACTG+CGG | - | chr7_3:61447966-61447985 | None:intergenic | 30.0% |
| !! | GCTTTTAGGTAGATTGATTT+TGG | + | chr7_3:61447984-61448003 | Msa1114600:intron | 30.0% |
| TAGTCAAATTTGATTCTGGT+AGG | + | chr7_3:61448061-61448080 | Msa1114600:intron | 30.0% | |
| !! | AGTACATTTTAACCTGTGTT+TGG | - | chr7_3:61448100-61448119 | None:intergenic | 30.0% |
| !!! | TGTTTTGTTTTATCACATGG+AGG | + | chr7_3:61448272-61448291 | Msa1114600:intron | 30.0% |
| !! | GATTGTTTTTCCAAGTTACT+TGG | + | chr7_3:61448313-61448332 | Msa1114600:intron | 30.0% |
| CGTTATTCTATTATGAGCTA+TGG | - | chr7_3:61448343-61448362 | None:intergenic | 30.0% | |
| CTCATAATAGAATAACGATG+TGG | + | chr7_3:61448346-61448365 | Msa1114600:intron | 30.0% | |
| ATAATAGAATAACGATGTGG+TGG | + | chr7_3:61448349-61448368 | Msa1114600:intron | 30.0% | |
| GTTTGTCAAAATAAGCGTAA+AGG | + | chr7_3:61448450-61448469 | Msa1114600:intron | 30.0% | |
| TCATTATATACCTCTACTGA+AGG | + | chr7_3:61448906-61448925 | Msa1114600:intron | 30.0% | |
| TAGTTTATATCCTTCAGTAG+AGG | - | chr7_3:61448919-61448938 | None:intergenic | 30.0% | |
| ! | TTCTGTTCCGAAACATTTTA+TGG | + | chr7_3:61449243-61449262 | Msa1114600:intron | 30.0% |
| ! | TTTTTCCCTATATCACTATC+TGG | + | chr7_3:61449482-61449501 | Msa1114600:intron | 30.0% |
| TTCTTCCAGATAGTGATATA+GGG | - | chr7_3:61449490-61449509 | None:intergenic | 30.0% | |
| TTTCTTCCAGATAGTGATAT+AGG | - | chr7_3:61449491-61449510 | None:intergenic | 30.0% | |
| !! | TATTTGGGATTTTGTGATTG+AGG | + | chr7_3:61449628-61449647 | Msa1114600:intron | 30.0% |
| !! | ATTTGGGATTTTGTGATTGA+GGG | + | chr7_3:61449629-61449648 | Msa1114600:intron | 30.0% |
| GACATATTTATCAGAATGCT+CGG | + | chr7_3:61449716-61449735 | Msa1114600:CDS | 30.0% | |
| ACATATTTATCAGAATGCTC+GGG | + | chr7_3:61449717-61449736 | Msa1114600:CDS | 30.0% | |
| !!! | AGTTTGTTTTAGCACATGTA+AGG | + | chr7_3:61449757-61449776 | Msa1114600:intron | 30.0% |
| GTTTCAACTGCAATGAAAAA+TGG | - | chr7_3:61449853-61449872 | None:intergenic | 30.0% | |
| ! | TTGTATATATTGATTGGTGG+GGG | - | chr7_3:61450095-61450114 | None:intergenic | 30.0% |
| ! | GTTGTATATATTGATTGGTG+GGG | - | chr7_3:61450096-61450115 | None:intergenic | 30.0% |
| ! | GATGAAAAGTTTTGCTCTCT+CGG | - | chr7_3:61446789-61446808 | None:intergenic | 35.0% |
| !!! | TGTTTTGTGCCTTTGAAACT+TGG | + | chr7_3:61446944-61446963 | Msa1114600:intron | 35.0% |
| CTATTTGCACCAAGTTTCAA+AGG | - | chr7_3:61446956-61446975 | None:intergenic | 35.0% | |
| !! | CTTTGAAACTTGGTGCAAAT+AGG | + | chr7_3:61446954-61446973 | Msa1114600:intron | 35.0% |
| TGCAAATAGGTAGCAATTCA+TGG | + | chr7_3:61446967-61446986 | Msa1114600:intron | 35.0% | |
| CAATTCATGGATTCTGTACT+TGG | + | chr7_3:61446980-61446999 | Msa1114600:exon | 35.0% | |
| CGAATCTGACTGAAATTATG+AGG | - | chr7_3:61447025-61447044 | None:intergenic | 35.0% | |
| TAACTTACAGAAGAACTGGA+AGG | - | chr7_3:61447058-61447077 | None:intergenic | 35.0% | |
| AATGAGATAAGGTCTGAACA+TGG | + | chr7_3:61447236-61447255 | Msa1114600:intron | 35.0% | |
| ATGAGATAAGGTCTGAACAT+GGG | + | chr7_3:61447237-61447256 | Msa1114600:intron | 35.0% | |
| !!! | TACCTGACGGATTTTTCAAT+AGG | - | chr7_3:61447342-61447361 | None:intergenic | 35.0% |
| TATTGAAAAATCCGTCAGGT+AGG | + | chr7_3:61447341-61447360 | Msa1114600:intron | 35.0% | |
| AAAAGAATGTCCAACCTTGT+TGG | - | chr7_3:61447413-61447432 | None:intergenic | 35.0% | |
| GTTAAGAATGTGTTGGATTG+AGG | + | chr7_3:61447438-61447457 | Msa1114600:intron | 35.0% | |
| AGCTGATGTACCTTTACTAA+GGG | + | chr7_3:61447758-61447777 | Msa1114600:intron | 35.0% | |
| TTTGCTTGGAAGTGAATTCA+AGG | + | chr7_3:61447841-61447860 | Msa1114600:intron | 35.0% | |
| CTCTATGTGTATGTATTGCT+TGG | - | chr7_3:61448133-61448152 | None:intergenic | 35.0% | |
| GAAGAAATACTCTGCCAATT+AGG | + | chr7_3:61448225-61448244 | Msa1114600:intron | 35.0% | |
| CCTTACTCTCTTTACCTAAT+TGG | - | chr7_3:61448242-61448261 | None:intergenic | 35.0% | |
| CCAATTAGGTAAAGAGAGTA+AGG | + | chr7_3:61448239-61448258 | Msa1114600:intron | 35.0% | |
| !! | TAAAATATCTCGCTGGCTTT+CGG | + | chr7_3:61448692-61448711 | Msa1114600:intron | 35.0% |
| !! | ATTTTATGGCAAGGCATCAT+TGG | - | chr7_3:61448754-61448773 | None:intergenic | 35.0% |
| ACAGCTAACGGTTCATTATA+CGG | - | chr7_3:61448865-61448884 | None:intergenic | 35.0% | |
| TTGAAGTGCAACATTCTGAA+TGG | + | chr7_3:61449052-61449071 | Msa1114600:intron | 35.0% | |
| GAAAAATTGCATCTTTCCTC+TGG | + | chr7_3:61449452-61449471 | Msa1114600:intron | 35.0% | |
| AGGGAAAAAGAATAATCCAG+AGG | - | chr7_3:61449471-61449490 | None:intergenic | 35.0% | |
| !! | AATATGGTACGTTTGGTTTG+TGG | - | chr7_3:61449535-61449554 | None:intergenic | 35.0% |
| CACAGTTAATATGGTACGTT+TGG | - | chr7_3:61449542-61449561 | None:intergenic | 35.0% | |
| CAAACGTACCATATTAACTG+TGG | + | chr7_3:61449540-61449559 | Msa1114600:intron | 35.0% | |
| AACTGCAACCACAGTTAATA+TGG | - | chr7_3:61449551-61449570 | None:intergenic | 35.0% | |
| ! | CTGTCAAAAGAATTTTCCAC+AGG | - | chr7_3:61449663-61449682 | None:intergenic | 35.0% |
| !!! | TGTTTTAGCACATGTAAGGT+AGG | + | chr7_3:61449761-61449780 | Msa1114600:intron | 35.0% |
| TTACCGTGGGACTCTTAATA+GGG | - | chr7_3:61447217-61447236 | None:intergenic | 40.0% | |
| TTTACCGTGGGACTCTTAAT+AGG | - | chr7_3:61447218-61447237 | None:intergenic | 40.0% | |
| GACCTTATCTCATTTACCGT+GGG | - | chr7_3:61447230-61447249 | None:intergenic | 40.0% | |
| AGACCTTATCTCATTTACCG+TGG | - | chr7_3:61447231-61447250 | None:intergenic | 40.0% | |
| ! | CCTTAAAAGACCGGCTTATA+AGG | - | chr7_3:61447278-61447297 | None:intergenic | 40.0% |
| ! | CCTTATAAGCCGGTCTTTTA+AGG | + | chr7_3:61447275-61447294 | Msa1114600:intron | 40.0% |
| AGCCTATTGAAAAATCCGTC+AGG | + | chr7_3:61447337-61447356 | Msa1114600:intron | 40.0% | |
| ATGTGTTGGATTGAGGGTTT+AGG | + | chr7_3:61447445-61447464 | Msa1114600:intron | 40.0% | |
| TATAACTCTTAGGGCGTGTT+TGG | - | chr7_3:61447683-61447702 | None:intergenic | 40.0% | |
| GAGCTGATGTACCTTTACTA+AGG | + | chr7_3:61447757-61447776 | Msa1114600:intron | 40.0% | |
| ! | ACCTTTACTAAGGGTGTGTT+TGG | + | chr7_3:61447767-61447786 | Msa1114600:intron | 40.0% |
| ACCAAACACACCCTTAGTAA+AGG | - | chr7_3:61447771-61447790 | None:intergenic | 40.0% | |
| !! | TAAGGGTGTGTTTGGTTCTA+TGG | + | chr7_3:61447775-61447794 | Msa1114600:intron | 40.0% |
| !! | GGATCAGAATTGCTTTTGCA+TGG | + | chr7_3:61447901-61447920 | Msa1114600:intron | 40.0% |
| GATTCTGGTAGGTACAAACA+TGG | + | chr7_3:61448072-61448091 | Msa1114600:intron | 40.0% | |
| ACAAACATGGAACCAAACAC+AGG | + | chr7_3:61448085-61448104 | Msa1114600:intron | 40.0% | |
| !! | GTTTGCAGAGAAGTATTGCT+GGG | - | chr7_3:61448181-61448200 | None:intergenic | 40.0% |
| !! | AGTTTGCAGAGAAGTATTGC+TGG | - | chr7_3:61448182-61448201 | None:intergenic | 40.0% |
| CTATGGTCATCCAAGTAACT+TGG | - | chr7_3:61448326-61448345 | None:intergenic | 40.0% | |
| !! | CCTTGATTTGCAACAGCTAA+CGG | - | chr7_3:61448877-61448896 | None:intergenic | 40.0% |
| CTGTTGCAAATCAAGGTCTT+TGG | + | chr7_3:61448881-61448900 | Msa1114600:intron | 40.0% | |
| AAATTGGTATGCTCCTCACT+TGG | - | chr7_3:61449106-61449125 | None:intergenic | 40.0% | |
| ! | AGTGAGGAGCATACCAATTT+CGG | + | chr7_3:61449106-61449125 | Msa1114600:intron | 40.0% |
| TTATCAGAATGCTCGGGAAA+AGG | + | chr7_3:61449723-61449742 | Msa1114600:CDS | 40.0% | |
| ACTCATCCATCACCATATAG+TGG | + | chr7_3:61449804-61449823 | Msa1114600:intron | 40.0% | |
| AGTTGAGTTAGGCCACTATA+TGG | - | chr7_3:61449819-61449838 | None:intergenic | 40.0% | |
| ACATATGCAGCAGTTGAGTT+AGG | - | chr7_3:61449830-61449849 | None:intergenic | 40.0% | |
| GGTAACCTAATACCAGAACA+TGG | + | chr7_3:61449890-61449909 | Msa1114600:CDS | 40.0% | |
| TGCATCCATGTTCTGGTATT+AGG | - | chr7_3:61449898-61449917 | None:intergenic | 40.0% | |
| TGACAATTGCATGCACTAGT+TGG | - | chr7_3:61449957-61449976 | None:intergenic | 40.0% | |
| TCAAACAAGCACCAAACTCT+TGG | - | chr7_3:61450017-61450036 | None:intergenic | 40.0% | |
| TTATTAGTCCGCTACAGACT+TGG | + | chr7_3:61450049-61450068 | Msa1114600:three_prime_UTR | 40.0% | |
| GAAGAACTGGAAGGATCTGA+AGG | - | chr7_3:61447049-61447068 | None:intergenic | 45.0% | |
| CTACCCTATTAAGAGTCCCA+CGG | + | chr7_3:61447211-61447230 | Msa1114600:intron | 45.0% | |
| GTCCCACGGTAAATGAGATA+AGG | + | chr7_3:61447225-61447244 | Msa1114600:intron | 45.0% | |
| ! | AAAGACCGGCTTATAAGGTG+AGG | - | chr7_3:61447273-61447292 | None:intergenic | 45.0% |
| ATAGAAGGTAGCCTACCTGA+CGG | - | chr7_3:61447355-61447374 | None:intergenic | 45.0% | |
| TGTTGGATTGAGGGTTTAGG+AGG | + | chr7_3:61447448-61447467 | Msa1114600:intron | 45.0% | |
| GTTGGATTGAGGGTTTAGGA+GGG | + | chr7_3:61447449-61447468 | Msa1114600:intron | 45.0% | |
| TTGGATTGAGGGTTTAGGAG+GGG | + | chr7_3:61447450-61447469 | Msa1114600:intron | 45.0% | |
| TTTGGATGGAGGGTTTAGGA+GGG | - | chr7_3:61447665-61447684 | None:intergenic | 45.0% | |
| !!! | AGGTAGATTGATTTTGGGGC+TGG | + | chr7_3:61447990-61448009 | Msa1114600:intron | 45.0% |
| ! | CGATGTGGTGGTGTAATTTG+AGG | + | chr7_3:61448361-61448380 | Msa1114600:intron | 45.0% |
| CCGTTAGCTGTTGCAAATCA+AGG | + | chr7_3:61448874-61448893 | Msa1114600:intron | 45.0% | |
| ! | GTGAGGAGCATACCAATTTC+GGG | + | chr7_3:61449107-61449126 | Msa1114600:intron | 45.0% |
| TTGTCACTACCTTGATCAGG+TGG | - | chr7_3:61449375-61449394 | None:intergenic | 45.0% | |
| CTCTTGTCACTACCTTGATC+AGG | - | chr7_3:61449378-61449397 | None:intergenic | 45.0% | |
| !! | ATTGAGGGTTTGCTAACCTG+TGG | + | chr7_3:61449644-61449663 | Msa1114600:intron | 45.0% |
| GTTAGGCCACTATATGGTGA+TGG | - | chr7_3:61449813-61449832 | None:intergenic | 45.0% | |
| AAACCAAAAAGAGCTGCAGC+TGG | + | chr7_3:61449869-61449888 | Msa1114600:CDS | 45.0% | |
| ! | TTACCAGCTGCAGCTCTTTT+TGG | - | chr7_3:61449875-61449894 | None:intergenic | 45.0% |
| AACATGGATGCAAGCAACCT+AGG | + | chr7_3:61449906-61449925 | Msa1114600:CDS | 45.0% | |
| ACATGGATGCAAGCAACCTA+GGG | + | chr7_3:61449907-61449926 | Msa1114600:CDS | 45.0% | |
| GTTGGTCAATGAACACTGTC+AGG | - | chr7_3:61449939-61449958 | None:intergenic | 45.0% | |
| TACACACTCCAAGTCTGTAG+CGG | - | chr7_3:61450060-61450079 | None:intergenic | 45.0% | |
| GCGATCCTCACCTTATAAGC+CGG | + | chr7_3:61447265-61447284 | Msa1114600:intron | 50.0% | |
| CAGGTAGGCTACCTTCTATC+AGG | + | chr7_3:61447356-61447375 | Msa1114600:intron | 50.0% | |
| ! | GATAGCGGTGACCTGATAGA+AGG | - | chr7_3:61447370-61447389 | None:intergenic | 50.0% |
| GTCACCGCTATCGAACAACT+CGG | + | chr7_3:61447378-61447397 | Msa1114600:intron | 50.0% | |
| TCACCGCTATCGAACAACTC+GGG | + | chr7_3:61447379-61447398 | Msa1114600:intron | 50.0% | |
| TGACCCGAGTTGTTCGATAG+CGG | - | chr7_3:61447385-61447404 | None:intergenic | 50.0% | |
| GGTCATGCTACCAACAAGGT+TGG | + | chr7_3:61447400-61447419 | Msa1114600:intron | 50.0% | |
| ATTGAGGGTTTAGGAGGGGA+AGG | + | chr7_3:61447454-61447473 | Msa1114600:intron | 50.0% | |
| TTGGATGGAGGGTTTAGGAG+GGG | - | chr7_3:61447664-61447683 | None:intergenic | 50.0% | |
| GTTTGGATGGAGGGTTTAGG+AGG | - | chr7_3:61447666-61447685 | None:intergenic | 50.0% | |
| CGTGTTTGGATGGAGGGTTT+AGG | - | chr7_3:61447669-61447688 | None:intergenic | 50.0% | |
| TTAGGGCGTGTTTGGATGGA+GGG | - | chr7_3:61447675-61447694 | None:intergenic | 50.0% | |
| ACTCTTAGGGCGTGTTTGGA+TGG | - | chr7_3:61447679-61447698 | None:intergenic | 50.0% | |
| ACTTGGCGAGAAAGAAGGCA+AGG | - | chr7_3:61449089-61449108 | None:intergenic | 50.0% | |
| TCCTCACTTGGCGAGAAAGA+AGG | - | chr7_3:61449094-61449113 | None:intergenic | 50.0% | |
| !! | ACCTTGATCAGGTGGTGGAA+GGG | - | chr7_3:61449367-61449386 | None:intergenic | 50.0% |
| !! | TACCTTGATCAGGTGGTGGA+AGG | - | chr7_3:61449368-61449387 | None:intergenic | 50.0% |
| TCACTACCTTGATCAGGTGG+TGG | - | chr7_3:61449372-61449391 | None:intergenic | 50.0% | |
| GGTTGCTTGCATCCATGTTC+TGG | - | chr7_3:61449905-61449924 | None:intergenic | 50.0% | |
| GGTCAATGAACACTGTCAGG+TGG | - | chr7_3:61449936-61449955 | None:intergenic | 50.0% | |
| CTCGGGTCATGCTACCAACA+AGG | + | chr7_3:61447396-61447415 | Msa1114600:intron | 55.0% | |
| AGGGTTTAGGAGGGGAAGGA+AGG | + | chr7_3:61447458-61447477 | Msa1114600:intron | 55.0% | |
| TAGGAGGGGAAGGAAGGAGA+AGG | + | chr7_3:61447464-61447483 | Msa1114600:intron | 55.0% | |
| AGGAGGGGAAGGAAGGAGAA+GGG | + | chr7_3:61447465-61447484 | Msa1114600:intron | 55.0% | |
| TGGAGGGTTTAGGAGGGGAA+GGG | - | chr7_3:61447659-61447678 | None:intergenic | 55.0% | |
| ATGGAGGGTTTAGGAGGGGA+AGG | - | chr7_3:61447660-61447679 | None:intergenic | 55.0% | |
| CTTAGGGCGTGTTTGGATGG+AGG | - | chr7_3:61447676-61447695 | None:intergenic | 55.0% | |
| TGTGCGCGTGTGTGTATGTG+TGG | - | chr7_3:61448718-61448737 | None:intergenic | 55.0% | |
| GCCTTCTTTCTCGCCAAGTG+AGG | + | chr7_3:61449090-61449109 | Msa1114600:intron | 55.0% | |
| GCATACCAATTTCGGGAGCG+TGG | + | chr7_3:61449114-61449133 | Msa1114600:intron | 55.0% | |
| ACACACCACGCTCCCGAAAT+TGG | - | chr7_3:61449122-61449141 | None:intergenic | 55.0% | |
| GGGTTCTGTCGTGAGTAGGA+TGG | - | chr7_3:61449347-61449366 | None:intergenic | 55.0% | |
| GGAAGGGTTCTGTCGTGAGT+AGG | - | chr7_3:61449351-61449370 | None:intergenic | 55.0% | |
| ACCCTTCCACCACCTGATCA+AGG | + | chr7_3:61449363-61449382 | Msa1114600:CDS | 55.0% | |
| CACTGTCAGGTGGAAACCCT+AGG | - | chr7_3:61449926-61449945 | None:intergenic | 55.0% | |
| AGGGGAAGGAAGGAGAAGGG+AGG | + | chr7_3:61447468-61447487 | Msa1114600:intron | 60.0% | |
| GGGGAAGGAAGGAGAAGGGA+GGG | + | chr7_3:61447469-61447488 | Msa1114600:intron | 60.0% | |
| GGGAAGGAAGGAGAAGGGAG+GGG | + | chr7_3:61447470-61447489 | Msa1114600:intron | 60.0% | |
| AAGGAAGGAGAAGGGAGGGG+AGG | + | chr7_3:61447473-61447492 | Msa1114600:intron | 60.0% | |
| AGGAAGGAGAAGGGAGGGGA+GGG | + | chr7_3:61447474-61447493 | Msa1114600:intron | 60.0% | |
| GGTTTAGGAGGGGAAGGGAG+GGG | - | chr7_3:61447654-61447673 | None:intergenic | 60.0% | |
| GGGTTTAGGAGGGGAAGGGA+GGG | - | chr7_3:61447655-61447674 | None:intergenic | 60.0% | |
| AGGGTTTAGGAGGGGAAGGG+AGG | - | chr7_3:61447656-61447675 | None:intergenic | 60.0% | |
| TTAGGAGGGGAAGGGAGGGG+AGG | - | chr7_3:61447651-61447670 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_3 | gene | 61446721 | 61450129 | 61446721 | ID=Msa1114600;Name=Msa1114600 |
| chr7_3 | mRNA | 61446721 | 61450129 | 61446721 | ID=Msa1114600-mRNA-1;Parent=Msa1114600;Name=Msa1114600-mRNA-1;_AED=0.29;_eAED=0.29;_QI=169|1|1|1|0.75|0.6|5|189|93 |
| chr7_3 | exon | 61446721 | 61446879 | 61446721 | ID=Msa1114600-mRNA-1:exon:13964;Parent=Msa1114600-mRNA-1 |
| chr7_3 | exon | 61446976 | 61447069 | 61446976 | ID=Msa1114600-mRNA-1:exon:13965;Parent=Msa1114600-mRNA-1 |
| chr7_3 | exon | 61449324 | 61449384 | 61449324 | ID=Msa1114600-mRNA-1:exon:13966;Parent=Msa1114600-mRNA-1 |
| chr7_3 | exon | 61449683 | 61449744 | 61449683 | ID=Msa1114600-mRNA-1:exon:13967;Parent=Msa1114600-mRNA-1 |
| chr7_3 | exon | 61449866 | 61450129 | 61449866 | ID=Msa1114600-mRNA-1:exon:13968;Parent=Msa1114600-mRNA-1 |
| chr7_3 | five_prime_UTR | 61446721 | 61446879 | 61446721 | ID=Msa1114600-mRNA-1:five_prime_utr;Parent=Msa1114600-mRNA-1 |
| chr7_3 | five_prime_UTR | 61446976 | 61446985 | 61446976 | ID=Msa1114600-mRNA-1:five_prime_utr;Parent=Msa1114600-mRNA-1 |
| chr7_3 | CDS | 61446986 | 61447069 | 61446986 | ID=Msa1114600-mRNA-1:cds;Parent=Msa1114600-mRNA-1 |
| chr7_3 | CDS | 61449324 | 61449384 | 61449324 | ID=Msa1114600-mRNA-1:cds;Parent=Msa1114600-mRNA-1 |
| chr7_3 | CDS | 61449683 | 61449744 | 61449683 | ID=Msa1114600-mRNA-1:cds;Parent=Msa1114600-mRNA-1 |
| chr7_3 | CDS | 61449866 | 61449940 | 61449866 | ID=Msa1114600-mRNA-1:cds;Parent=Msa1114600-mRNA-1 |
| chr7_3 | three_prime_UTR | 61449941 | 61450129 | 61449941 | ID=Msa1114600-mRNA-1:three_prime_utr;Parent=Msa1114600-mRNA-1 |
| Gene Sequence |
| Protein sequence |
