AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0475580


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0475580 MtrunA17_Chr3g0133161 88.732 284 0 1 1 284 1 252 0.0 500
Msa0475580 MtrunA17_Chr3g0132301 67.658 269 54 2 11 279 8 243 6.75e-129 366
Msa0475580 MtrunA17_Chr5g0426551 66.543 269 57 2 11 279 8 243 2.86e-128 365
Msa0475580 MtrunA17_Chr1g0164601 64.982 277 60 4 1 276 1 241 9.04e-117 335
Msa0475580 MtrunA17_Chr3g0082111 64.621 277 61 4 1 276 31 271 1.70e-115 333
Msa0475580 MtrunA17_Chr2g0325591 57.664 274 81 2 10 283 6 244 2.74e-109 317
Msa0475580 MtrunA17_Chr5g0418971 58.801 267 75 2 11 277 7 238 1.72e-106 310
Msa0475580 MtrunA17_Chr8g0379011 57.621 269 79 2 11 279 7 240 5.61e-106 308
Msa0475580 MtrunA17_Chr2g0283791 56.877 269 80 3 12 280 6 238 2.38e-102 299
Msa0475580 MtrunA17_Chr2g0316011 56.929 267 80 2 11 277 8 239 7.21e-102 298
Msa0475580 MtrunA17_Chr4g0043141 59.483 232 81 2 46 277 14 232 2.55e-95 281
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0475580 AT5G10450.1 74.275 276 39 1 8 283 4 247 4.11e-149 417
Msa0475580 AT5G65430.1 73.188 276 42 1 8 283 4 247 1.78e-147 413
Msa0475580 AT5G10450.2 74.539 271 37 1 8 278 4 242 5.52e-146 409
Msa0475580 AT5G10450.3 74.539 271 37 1 8 278 4 242 1.30e-145 409
Msa0475580 AT5G10450.4 74.539 271 37 1 8 278 4 242 1.42e-145 409
Msa0475580 AT5G65430.2 73.432 271 40 1 8 278 4 242 1.60e-144 406
Msa0475580 AT5G65430.3 73.432 271 40 1 8 278 4 242 6.25e-144 405
Msa0475580 AT1G35160.1 64.835 273 63 2 11 283 11 250 8.74e-126 359
Msa0475580 AT1G78300.1 65.185 270 61 2 10 279 4 240 2.33e-125 358
Msa0475580 AT4G09000.1 64.576 271 63 2 11 281 10 247 1.01e-124 357
Msa0475580 AT3G02520.1 64.945 271 62 2 10 280 4 241 2.59e-124 355
Msa0475580 AT3G02520.2 64.945 271 62 2 10 280 4 241 2.59e-124 355
Msa0475580 AT1G35160.2 65.299 268 60 2 11 278 11 245 4.53e-124 356
Msa0475580 AT5G38480.1 64.576 271 63 2 10 280 3 240 5.36e-123 352
Msa0475580 AT4G09000.2 64.925 268 61 2 11 278 10 244 2.32e-122 352
Msa0475580 AT5G38480.3 64.234 274 65 2 10 283 3 243 2.59e-122 350
Msa0475580 AT5G38480.2 64.234 274 65 2 10 283 3 243 2.59e-122 350
Msa0475580 AT5G16050.1 64.945 271 62 2 10 280 6 243 2.69e-118 340
Msa0475580 AT5G16050.2 64.945 271 62 2 10 280 6 243 2.69e-118 340
Msa0475580 AT1G26480.1 59.551 267 73 2 11 277 10 241 8.95e-109 316
Msa0475580 AT2G42590.2 56.410 273 84 2 11 283 7 244 2.81e-101 297
Msa0475580 AT2G42590.1 56.667 270 82 2 11 280 7 241 1.16e-100 295
Msa0475580 AT2G42590.3 56.667 270 82 2 11 280 7 241 1.48e-100 295
Msa0475580 AT1G34760.1 55.762 269 84 2 11 279 5 238 3.47e-100 294
Msa0475580 AT1G34760.2 55.762 269 84 2 11 279 5 238 3.50e-100 294
Msa0475580 AT1G22300.1 56.044 273 85 2 11 283 5 242 6.92e-97 285
Msa0475580 AT1G22300.2 56.044 273 85 2 11 283 5 242 7.23e-97 285
Msa0475580 AT1G22300.3 55.926 270 84 2 11 280 5 239 1.30e-95 282
Msa0475580 AT1G78220.1 38.346 266 128 3 11 275 5 235 5.98e-55 178
Msa0475580 AT1G22290.1 38.776 196 99 5 14 207 8 184 4.71e-32 117
Msa0475580 AT1G22290.2 38.776 196 99 5 14 207 8 184 1.25e-31 117
Msa0475580 AT2G10450.1 68.421 38 12 0 243 280 16 53 2.30e-11 59.3

Find 70 sgRNAs with CRISPR-Local

Find 152 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCCAATCAATTTATAAATT+AGG 0.111804 3_3:-78835183 None:intergenic
TGCGCCAGATATAATTTAAT+TGG 0.184846 3_3:-78835293 None:intergenic
GCCAATCAATTTATAAATTA+GGG 0.197574 3_3:-78835182 None:intergenic
TATAAGTGTGCTGTCTTTGT+AGG 0.261422 3_3:-78834867 None:intergenic
TGAGCCTTGATATCCCTTAT+AGG 0.276927 3_3:+78835090 Msa0475580:exon
GAATGTTTGTGGTAGTATTC+TGG 0.294961 3_3:+78833045 Msa0475580:CDS
ATACAACCCGTCAACCTATA+AGG 0.301012 3_3:-78835104 None:intergenic
GGGTGATTATCATAGGTATT+TGG 0.311976 3_3:+78833138 Msa0475580:CDS
ACACATACTGTTCTCTGTTT+AGG 0.318322 3_3:-78832757 None:intergenic
ACCCTAATTTATAAATTGAT+TGG 0.328807 3_3:+78835181 Msa0475580:three_prime_UTR
ATCAACTCATCCTATAAGAT+TGG 0.331215 3_3:+78833337 Msa0475580:CDS
TGAGGAAGCAATTGCTGAAC+TGG 0.348492 3_3:+78834826 Msa0475580:CDS
AGAGCCAAACCCAATCTTAT+AGG 0.362825 3_3:-78833347 None:intergenic
AGCTTGTGACATGGCCAAAC+AGG 0.376909 3_3:+78833415 Msa0475580:CDS
AGATCCAATTAAATTATATC+TGG 0.377385 3_3:+78835289 Msa0475580:three_prime_UTR
CGTTAACTCTGATTCAACTT+TGG 0.380898 3_3:-78833023 None:intergenic
TCATCCTATAAGATTGGGTT+TGG 0.386635 3_3:+78833343 Msa0475580:CDS
TGCTTCTTCAAGTGAAAGTA+AGG 0.390843 3_3:+78833096 Msa0475580:CDS
TCAACATAACAGAATCTTTG+TGG 0.397796 3_3:-78833681 None:intergenic
CAGATTAACACAAACCTGTT+TGG 0.398433 3_3:-78833429 None:intergenic
TGAGAGACAACCTCACCCTT+TGG 0.419313 3_3:+78834900 Msa0475580:CDS
TATTTGGCTGAGTTTAAGAT+TGG 0.435348 3_3:+78833154 Msa0475580:CDS
TGATATCCCTTATAGGTTGA+CGG 0.443417 3_3:+78835097 Msa0475580:exon
ATTGCTGAACTGGACACATT+AGG 0.448432 3_3:+78834836 Msa0475580:CDS
TACAACCCGTCAACCTATAA+GGG 0.450779 3_3:-78835103 None:intergenic
TCAACTCATCCTATAAGATT+GGG 0.451846 3_3:+78833338 Msa0475580:CDS
TGGTAGTATTCTGGAGTTGT+TGG 0.453677 3_3:+78833054 Msa0475580:CDS
GATATCCCTTATAGGTTGAC+GGG 0.458675 3_3:+78835098 Msa0475580:exon
AGATGAAGGGTGATTATCAT+AGG 0.459315 3_3:+78833131 Msa0475580:CDS
TATTCTTCCTCTGAAGGAGG+TGG 0.459941 3_3:+78835124 Msa0475580:three_prime_UTR
TCTTGTAAGCGACGGATATG+AGG 0.463010 3_3:-78832892 None:intergenic
ATTTGGATATATTGTCTGAA+TGG 0.473124 3_3:+78835265 Msa0475580:three_prime_UTR
AAGAGAGAAGAGAGAATCAT+GGG 0.475360 3_3:+78832716 Msa0475580:exon
CGTTTCTTCGATTGAACAGA+AGG 0.478904 3_3:+78832949 Msa0475580:CDS
AAAGAGAGAAGAGAGAATCA+TGG 0.480567 3_3:+78832715 Msa0475580:exon
CCTTTGGACTTCTGATGTCC+AGG 0.486316 3_3:+78834916 Msa0475580:CDS
TTTGGATATATTGTCTGAAT+GGG 0.490091 3_3:+78835266 Msa0475580:three_prime_UTR
GTTGTCTTACAAAGCTGCAC+AGG 0.491542 3_3:+78833210 Msa0475580:CDS
TTCATGCAGAAGCTTGTAGT+GGG 0.493249 3_3:+78832830 Msa0475580:CDS
AATCTTATAGGATGAGTTGA+TGG 0.494756 3_3:-78833335 None:intergenic
TCAGAGTTAACGAATGTTTG+TGG 0.495537 3_3:+78833034 Msa0475580:CDS
TCGATTGAACAGAAGGAAGA+AGG 0.502247 3_3:+78832956 Msa0475580:CDS
GATATCAAGGCTCATCTAGC+TGG 0.506112 3_3:-78835081 None:intergenic
CTTCATGCAGAAGCTTGTAG+TGG 0.529618 3_3:+78832829 Msa0475580:CDS
TCAACCTATAAGGGATATCA+AGG 0.529736 3_3:-78835094 None:intergenic
CTTTCACTTGAAGAAGCAGA+AGG 0.537834 3_3:-78833091 None:intergenic
ATTTGTGATATAGTGTCGTA+TGG 0.540446 3_3:+78835206 Msa0475580:three_prime_UTR
TAAAATTGCTTGACCAAACA+AGG 0.540686 3_3:-78833656 None:intergenic
GGGTTGTATTCTTCCTCTGA+AGG 0.548463 3_3:+78835118 Msa0475580:three_prime_UTR
CACTACAAGCTTCTGCATGA+AGG 0.552358 3_3:-78832828 None:intergenic
ATTCTTCCTCTGAAGGAGGT+GGG 0.567808 3_3:+78835125 Msa0475580:three_prime_UTR
GTCGCTTACAAGAACGTGAT+CGG 0.573437 3_3:+78832902 Msa0475580:CDS
CAGAGCTTAGCGTCGAAGAG+AGG 0.573495 3_3:+78832867 Msa0475580:CDS
CTGGACATCAGAAGTCCAAA+GGG 0.585147 3_3:-78834915 None:intergenic
AGCTGAACGCTACGAGGAGA+TGG 0.585286 3_3:+78832802 Msa0475580:CDS
TCGACGCTAAGCTCTGATGA+TGG 0.586328 3_3:-78832860 None:intergenic
CATCAGAAGTCCAAAGGGTG+AGG 0.595169 3_3:-78834910 None:intergenic
TCATAGCCCACCTCCTTCAG+AGG 0.601484 3_3:-78835131 None:intergenic
TTGTATTCTTCCTCTGAAGG+AGG 0.611172 3_3:+78835121 Msa0475580:three_prime_UTR
ATCTGACAAAGCTTGTGACA+TGG 0.613255 3_3:+78833406 Msa0475580:CDS
CCTGGACATCAGAAGTCCAA+AGG 0.616148 3_3:-78834916 None:intergenic
AAATTCAACACTAATTGCTG+AGG 0.616281 3_3:+78833705 Msa0475580:CDS
AGATCATGTTGTGCTTGTGA+AGG 0.627894 3_3:+78832991 Msa0475580:CDS
GTTTAAGGATATTGCTGCTG+CGG 0.646957 3_3:+78833307 Msa0475580:intron
GCTAAGCTCTGATGATGGTG+TGG 0.653682 3_3:-78832855 None:intergenic
TCATGCAGAAGCTTGTAGTG+GGG 0.666058 3_3:+78832831 Msa0475580:CDS
AGAGAAGAGAGAATCATGGG+TGG 0.672151 3_3:+78832719 Msa0475580:exon
TCGGATCGCTACGTGCTGCG+TGG 0.678712 3_3:+78832921 Msa0475580:CDS
AGAACAAGCTGAACGCTACG+AGG 0.693981 3_3:+78832796 Msa0475580:CDS
GATCACGTTCTTGTAAGCGA+CGG 0.709037 3_3:-78832900 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAAATAAATCACAAATTAA+AGG - chr3_3:78833594-78833613 None:intergenic 10.0%
!!! GTTTTTTATTATAAGATGAA+GGG + chr3_3:78833118-78833137 Msa0475580:CDS 15.0%
!! TCAAAAAATTTCATAGTTAT+TGG + chr3_3:78833926-78833945 Msa0475580:intron 15.0%
!!! TATGATTTATATTTTAAGCT+CGG - chr3_3:78834026-78834045 None:intergenic 15.0%
!!! GGTTTTTTATTATAAGATGA+AGG + chr3_3:78833117-78833136 Msa0475580:CDS 20.0%
!! TGAGGTTATTATAATCTAAT+GGG + chr3_3:78833723-78833742 Msa0475580:intron 20.0%
!!! AACTATGAAATTTTTTGACT+AGG - chr3_3:78833924-78833943 None:intergenic 20.0%
!! GAGCTTAAAATATAAATCAT+AGG + chr3_3:78834025-78834044 Msa0475580:intron 20.0%
!!! TTTTAAAAAAGGTTTGTGTT+TGG + chr3_3:78834264-78834283 Msa0475580:intron 20.0%
!! TGCATTAAAGAAATCTATAT+TGG + chr3_3:78834299-78834318 Msa0475580:intron 20.0%
!!! AATTCTCTTTTTTTTCTGTT+TGG + chr3_3:78834420-78834439 Msa0475580:intron 20.0%
!!! AATATTGTTATTCATTTGCA+AGG + chr3_3:78834449-78834468 Msa0475580:intron 20.0%
!! ATTATAAAATTAAACAGAGG+GGG - chr3_3:78834671-78834690 None:intergenic 20.0%
!! CATTATAAAATTAAACAGAG+GGG - chr3_3:78834672-78834691 None:intergenic 20.0%
!! GCATTATAAAATTAAACAGA+GGG - chr3_3:78834673-78834692 None:intergenic 20.0%
!! AGCATTATAAAATTAAACAG+AGG - chr3_3:78834674-78834693 None:intergenic 20.0%
!!! AAACAATTTTCTTTTCCTTT+TGG + chr3_3:78834794-78834813 Msa0475580:intron 20.0%
!!! TATGTTAAAAACATTTTACC+TGG - chr3_3:78834937-78834956 None:intergenic 20.0%
!!! GCATTTTGATTAATAATCAT+TGG + chr3_3:78834991-78835010 Msa0475580:intron 20.0%
!! ACCCTAATTTATAAATTGAT+TGG + chr3_3:78835181-78835200 Msa0475580:three_prime_UTR 20.0%
!! GCCAATCAATTTATAAATTA+GGG - chr3_3:78835185-78835204 None:intergenic 20.0%
!! TGCCAATCAATTTATAAATT+AGG - chr3_3:78835186-78835205 None:intergenic 20.0%
!! AAAACAAACATAAAAAAGTC+TGG - chr3_3:78835233-78835252 None:intergenic 20.0%
!! AGATCCAATTAAATTATATC+TGG + chr3_3:78835289-78835308 Msa0475580:three_prime_UTR 20.0%
!! ATTGTTGTGTTTTGTGTTTA+AGG + chr3_3:78833292-78833311 Msa0475580:intron 25.0%
!!! ATCTTGGTTTTTTGTTTGTT+TGG + chr3_3:78833452-78833471 Msa0475580:intron 25.0%
!! ACAAATTAAAGGAAGCATAT+AGG - chr3_3:78833583-78833602 None:intergenic 25.0%
! CTGAGGTTATTATAATCTAA+TGG + chr3_3:78833722-78833741 Msa0475580:intron 25.0%
!!! ATGAAATTTTTTGACTAGGA+GGG - chr3_3:78833920-78833939 None:intergenic 25.0%
!!! TATGAAATTTTTTGACTAGG+AGG - chr3_3:78833921-78833940 None:intergenic 25.0%
! AATTTCATAGTTATTGGAGT+TGG + chr3_3:78833932-78833951 Msa0475580:intron 25.0%
! AATTCTAACTGCAGAAAATT+TGG + chr3_3:78834098-78834117 Msa0475580:intron 25.0%
!!! AAGAGCGTATATCTATTTTA+CGG - chr3_3:78834126-78834145 None:intergenic 25.0%
! AACTGCAAATATATGGATAT+TGG + chr3_3:78834201-78834220 Msa0475580:intron 25.0%
! TTTCATGGTTAAGTTATTGT+GGG + chr3_3:78834227-78834246 Msa0475580:intron 25.0%
! TAGTGAATTTAACTCAGAAT+GGG + chr3_3:78834354-78834373 Msa0475580:intron 25.0%
!! ACTTGCTAGAGAAAAAAAAA+AGG + chr3_3:78834612-78834631 Msa0475580:intron 25.0%
! TTATTCATCTGCAACAAATT+TGG + chr3_3:78834636-78834655 Msa0475580:intron 25.0%
!! ATTTTCTTTTCCTTTTGGAT+AGG + chr3_3:78834799-78834818 Msa0475580:intron 25.0%
!!! ACAGAAAAATGTTCTGAAAA+GGG - chr3_3:78834967-78834986 None:intergenic 25.0%
! AACTCAGATTATGATCAATT+TGG - chr3_3:78835037-78835056 None:intergenic 25.0%
! AATCTGAGTTAAGCTATATT+TGG + chr3_3:78835047-78835066 Msa0475580:intron 25.0%
!!! GTTTTTTATGTCTCATGATT+TGG + chr3_3:78835248-78835267 Msa0475580:three_prime_UTR 25.0%
! ATTTGGATATATTGTCTGAA+TGG + chr3_3:78835265-78835284 Msa0475580:three_prime_UTR 25.0%
! TTTGGATATATTGTCTGAAT+GGG + chr3_3:78835266-78835285 Msa0475580:three_prime_UTR 25.0%
! TATTTGGCTGAGTTTAAGAT+TGG + chr3_3:78833154-78833173 Msa0475580:CDS 30.0%
! AATCTTATAGGATGAGTTGA+TGG - chr3_3:78833338-78833357 None:intergenic 30.0%
ATCAACTCATCCTATAAGAT+TGG + chr3_3:78833337-78833356 Msa0475580:CDS 30.0%
TCAACTCATCCTATAAGATT+GGG + chr3_3:78833338-78833357 Msa0475580:CDS 30.0%
TAAAATTGCTTGACCAAACA+AGG - chr3_3:78833659-78833678 None:intergenic 30.0%
TCAACATAACAGAATCTTTG+TGG - chr3_3:78833684-78833703 None:intergenic 30.0%
AAATTCAACACTAATTGCTG+AGG + chr3_3:78833705-78833724 Msa0475580:CDS 30.0%
CATCCTTTCATAAGATACAT+AGG - chr3_3:78833836-78833855 None:intergenic 30.0%
AAGAAATTCACAGCATATCT+AGG - chr3_3:78833876-78833895 None:intergenic 30.0%
! TATACGCTCTTTCTTTTACA+TGG + chr3_3:78834135-78834154 Msa0475580:intron 30.0%
ATTTGCAGTTAGACTACTAT+GGG - chr3_3:78834191-78834210 None:intergenic 30.0%
TATTTGCAGTTAGACTACTA+TGG - chr3_3:78834192-78834211 None:intergenic 30.0%
GTAGTCTAACTGCAAATATA+TGG + chr3_3:78834194-78834213 Msa0475580:intron 30.0%
! TATGGATATTGGTAGTTTCA+TGG + chr3_3:78834212-78834231 Msa0475580:intron 30.0%
GTTTCATGGTTAAGTTATTG+TGG + chr3_3:78834226-78834245 Msa0475580:intron 30.0%
TTCATGGTTAAGTTATTGTG+GGG + chr3_3:78834228-78834247 Msa0475580:intron 30.0%
GTAGTGAATTTAACTCAGAA+TGG + chr3_3:78834353-78834372 Msa0475580:intron 30.0%
AGTGAATTTAACTCAGAATG+GGG + chr3_3:78834355-78834374 Msa0475580:intron 30.0%
AGAATTCTCTCTTTACTCTT+TGG + chr3_3:78834537-78834556 Msa0475580:intron 30.0%
AAAGAAAAGAGAAACACAGA+AGG - chr3_3:78834755-78834774 None:intergenic 30.0%
!! GACAGAAAAATGTTCTGAAA+AGG - chr3_3:78834968-78834987 None:intergenic 30.0%
! GATCAATTTGGAGCAATATT+AGG - chr3_3:78835025-78835044 None:intergenic 30.0%
ATTTGTGATATAGTGTCGTA+TGG + chr3_3:78835206-78835225 Msa0475580:three_prime_UTR 30.0%
TGCGCCAGATATAATTTAAT+TGG - chr3_3:78835296-78835315 None:intergenic 30.0%
AAAGAGAGAAGAGAGAATCA+TGG + chr3_3:78832715-78832734 Msa0475580:exon 35.0%
AAGAGAGAAGAGAGAATCAT+GGG + chr3_3:78832716-78832735 Msa0475580:exon 35.0%
!! TGTTCTCTGTTTAGGTTTTC+TGG - chr3_3:78832752-78832771 None:intergenic 35.0%
ACACATACTGTTCTCTGTTT+AGG - chr3_3:78832760-78832779 None:intergenic 35.0%
CGTTAACTCTGATTCAACTT+TGG - chr3_3:78833026-78833045 None:intergenic 35.0%
TCAGAGTTAACGAATGTTTG+TGG + chr3_3:78833034-78833053 Msa0475580:CDS 35.0%
GAATGTTTGTGGTAGTATTC+TGG + chr3_3:78833045-78833064 Msa0475580:CDS 35.0%
TGCTTCTTCAAGTGAAAGTA+AGG + chr3_3:78833096-78833115 Msa0475580:CDS 35.0%
AGATGAAGGGTGATTATCAT+AGG + chr3_3:78833131-78833150 Msa0475580:CDS 35.0%
GGGTGATTATCATAGGTATT+TGG + chr3_3:78833138-78833157 Msa0475580:CDS 35.0%
TCATCCTATAAGATTGGGTT+TGG + chr3_3:78833343-78833362 Msa0475580:CDS 35.0%
CAGATTAACACAAACCTGTT+TGG - chr3_3:78833432-78833451 None:intergenic 35.0%
GGTTTGTGTTAATCTGATCT+TGG + chr3_3:78833436-78833455 Msa0475580:intron 35.0%
! AGAAGTTTTCTGACCTTGTT+TGG + chr3_3:78833643-78833662 Msa0475580:CDS 35.0%
TGTCAATTGCTCATTCTTAG+TGG - chr3_3:78833760-78833779 None:intergenic 35.0%
GAATGAGCAATTGACATGTT+TGG + chr3_3:78833764-78833783 Msa0475580:intron 35.0%
! GTAAGAAATCCGTTTGACTT+TGG + chr3_3:78833802-78833821 Msa0475580:intron 35.0%
GTGCCTATGTATCTTATGAA+AGG + chr3_3:78833830-78833849 Msa0475580:intron 35.0%
TTCTGATTTACACACTGTGT+TGG + chr3_3:78834063-78834082 Msa0475580:intron 35.0%
TATGGGTTCATTGTTCATTC+AGG - chr3_3:78834174-78834193 None:intergenic 35.0%
! TAAAAGTTTGCTCATGAAGC+TGG + chr3_3:78834325-78834344 Msa0475580:intron 35.0%
! AAAAGTTTGCTCATGAAGCT+GGG + chr3_3:78834326-78834345 Msa0475580:intron 35.0%
ATTAAACAGAGGGGGAAAAA+AGG - chr3_3:78834663-78834682 None:intergenic 35.0%
!! AAGAGTGTTGTTTACCATAC+TGG + chr3_3:78834695-78834714 Msa0475580:intron 35.0%
! ACTTGATAACACAACCAGTA+TGG - chr3_3:78834712-78834731 None:intergenic 35.0%
TATAAGTGTGCTGTCTTTGT+AGG - chr3_3:78834870-78834889 None:intergenic 35.0%
!! GAAAAATGTTCTGAAAAGGG+TGG - chr3_3:78834964-78834983 None:intergenic 35.0%
! AAGCTATATTTGGCTTATGC+AGG + chr3_3:78835057-78835076 Msa0475580:intron 35.0%
TCAACCTATAAGGGATATCA+AGG - chr3_3:78835097-78835116 None:intergenic 35.0%
! TGATATCCCTTATAGGTTGA+CGG + chr3_3:78835097-78835116 Msa0475580:exon 35.0%
TTCATGCAGAAGCTTGTAGT+GGG + chr3_3:78832830-78832849 Msa0475580:CDS 40.0%
CGTTTCTTCGATTGAACAGA+AGG + chr3_3:78832949-78832968 Msa0475580:CDS 40.0%
TCGATTGAACAGAAGGAAGA+AGG + chr3_3:78832956-78832975 Msa0475580:CDS 40.0%
AGATCATGTTGTGCTTGTGA+AGG + chr3_3:78832991-78833010 Msa0475580:CDS 40.0%
!! TGGTAGTATTCTGGAGTTGT+TGG + chr3_3:78833054-78833073 Msa0475580:CDS 40.0%
CTTTCACTTGAAGAAGCAGA+AGG - chr3_3:78833094-78833113 None:intergenic 40.0%
TGAGAAAAAATCTGCTGCTG+AGG + chr3_3:78833180-78833199 Msa0475580:CDS 40.0%
GTTTAAGGATATTGCTGCTG+CGG + chr3_3:78833307-78833326 Msa0475580:intron 40.0%
AGAGCCAAACCCAATCTTAT+AGG - chr3_3:78833350-78833369 None:intergenic 40.0%
ATCTGACAAAGCTTGTGACA+TGG + chr3_3:78833406-78833425 Msa0475580:CDS 40.0%
GCACAAACACCAAAGTCAAA+CGG - chr3_3:78833814-78833833 None:intergenic 40.0%
ATGAAAGGATGTGTGAAAGC+TGG + chr3_3:78833845-78833864 Msa0475580:intron 40.0%
! CTCTTTCTTTTACATGGCTG+TGG + chr3_3:78834141-78834160 Msa0475580:intron 40.0%
! TCCTTTTGGATAGGCTTTTG+AGG + chr3_3:78834808-78834827 Msa0475580:intron 40.0%
TCCTCAAAAGCCTATCCAAA+AGG - chr3_3:78834812-78834831 None:intergenic 40.0%
ATTGCTGAACTGGACACATT+AGG + chr3_3:78834836-78834855 Msa0475580:CDS 40.0%
TGGAGCAATATTAGGAAGAG+AGG - chr3_3:78835017-78835036 None:intergenic 40.0%
TGAGCCTTGATATCCCTTAT+AGG + chr3_3:78835090-78835109 Msa0475580:exon 40.0%
! GATATCCCTTATAGGTTGAC+GGG + chr3_3:78835098-78835117 Msa0475580:exon 40.0%
TACAACCCGTCAACCTATAA+GGG - chr3_3:78835106-78835125 None:intergenic 40.0%
ATACAACCCGTCAACCTATA+AGG - chr3_3:78835107-78835126 None:intergenic 40.0%
! TTGTATTCTTCCTCTGAAGG+AGG + chr3_3:78835121-78835140 Msa0475580:three_prime_UTR 40.0%
AGAGAAGAGAGAATCATGGG+TGG + chr3_3:78832719-78832738 Msa0475580:exon 45.0%
! CTTGTTCTGCGAGTTTTGCT+AGG - chr3_3:78832784-78832803 None:intergenic 45.0%
CACTACAAGCTTCTGCATGA+AGG - chr3_3:78832831-78832850 None:intergenic 45.0%
CTTCATGCAGAAGCTTGTAG+TGG + chr3_3:78832829-78832848 Msa0475580:CDS 45.0%
TCATGCAGAAGCTTGTAGTG+GGG + chr3_3:78832831-78832850 Msa0475580:CDS 45.0%
TCTTGTAAGCGACGGATATG+AGG - chr3_3:78832895-78832914 None:intergenic 45.0%
GATCACGTTCTTGTAAGCGA+CGG - chr3_3:78832903-78832922 None:intergenic 45.0%
GTCGCTTACAAGAACGTGAT+CGG + chr3_3:78832902-78832921 Msa0475580:CDS 45.0%
GTTGTCTTACAAAGCTGCAC+AGG + chr3_3:78833210-78833229 Msa0475580:CDS 45.0%
CAGAATGGGGAAATTGCACA+TGG + chr3_3:78834368-78834387 Msa0475580:intron 45.0%
ATGGGGAAATTGCACATGGA+AGG + chr3_3:78834372-78834391 Msa0475580:intron 45.0%
TGAGGAAGCAATTGCTGAAC+TGG + chr3_3:78834826-78834845 Msa0475580:CDS 45.0%
CTGGACATCAGAAGTCCAAA+GGG - chr3_3:78834918-78834937 None:intergenic 45.0%
GATATCAAGGCTCATCTAGC+TGG - chr3_3:78835084-78835103 None:intergenic 45.0%
GGGTTGTATTCTTCCTCTGA+AGG + chr3_3:78835118-78835137 Msa0475580:three_prime_UTR 45.0%
! TATTCTTCCTCTGAAGGAGG+TGG + chr3_3:78835124-78835143 Msa0475580:three_prime_UTR 45.0%
! ATTCTTCCTCTGAAGGAGGT+GGG + chr3_3:78835125-78835144 Msa0475580:three_prime_UTR 45.0%
!!! TTTATTATATTGAAAATTTT+AGG + chr3_3:78833609-78833628 Msa0475580:intron 5.0%
!!! AACTTATAATTTTTTAAAAA+AGG + chr3_3:78834253-78834272 Msa0475580:intron 5.0%
AGAACAAGCTGAACGCTACG+AGG + chr3_3:78832796-78832815 Msa0475580:CDS 50.0%
!! GCTAAGCTCTGATGATGGTG+TGG - chr3_3:78832858-78832877 None:intergenic 50.0%
! TCGACGCTAAGCTCTGATGA+TGG - chr3_3:78832863-78832882 None:intergenic 50.0%
AGCTTGTGACATGGCCAAAC+AGG + chr3_3:78833415-78833434 Msa0475580:CDS 50.0%
TGAGAGACAACCTCACCCTT+TGG + chr3_3:78834900-78834919 Msa0475580:CDS 50.0%
CATCAGAAGTCCAAAGGGTG+AGG - chr3_3:78834913-78834932 None:intergenic 50.0%
CCTGGACATCAGAAGTCCAA+AGG - chr3_3:78834919-78834938 None:intergenic 50.0%
CCTTTGGACTTCTGATGTCC+AGG + chr3_3:78834916-78834935 Msa0475580:CDS 50.0%
AGCTGAACGCTACGAGGAGA+TGG + chr3_3:78832802-78832821 Msa0475580:CDS 55.0%
! CAGAGCTTAGCGTCGAAGAG+AGG + chr3_3:78832867-78832886 Msa0475580:CDS 55.0%
TCATAGCCCACCTCCTTCAG+AGG - chr3_3:78835134-78835153 None:intergenic 55.0%
TCGGATCGCTACGTGCTGCG+TGG + chr3_3:78832921-78832940 Msa0475580:CDS 65.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 78832683 78835339 78832683 ID=Msa0475580;Name=Msa0475580
chr3_3 mRNA 78832683 78835339 78832683 ID=Msa0475580-mRNA-1;Parent=Msa0475580;Name=Msa0475580-mRNA-1;_AED=0.09;_eAED=0.09;_QI=51|0.5|0.8|0.8|1|1|5|240|284
chr3_3 exon 78832683 78833231 78832683 ID=Msa0475580-mRNA-1:exon:21307;Parent=Msa0475580-mRNA-1
chr3_3 exon 78833314 78833436 78833314 ID=Msa0475580-mRNA-1:exon:21308;Parent=Msa0475580-mRNA-1
chr3_3 exon 78833631 78833726 78833631 ID=Msa0475580-mRNA-1:exon:21309;Parent=Msa0475580-mRNA-1
chr3_3 exon 78834821 78834937 78834821 ID=Msa0475580-mRNA-1:exon:21310;Parent=Msa0475580-mRNA-1
chr3_3 exon 78835079 78835339 78835079 ID=Msa0475580-mRNA-1:exon:21311;Parent=Msa0475580-mRNA-1
chr3_3 five_prime_UTR 78832683 78832733 78832683 ID=Msa0475580-mRNA-1:five_prime_utr;Parent=Msa0475580-mRNA-1
chr3_3 CDS 78832734 78833231 78832734 ID=Msa0475580-mRNA-1:cds;Parent=Msa0475580-mRNA-1
chr3_3 CDS 78833314 78833436 78833314 ID=Msa0475580-mRNA-1:cds;Parent=Msa0475580-mRNA-1
chr3_3 CDS 78833631 78833726 78833631 ID=Msa0475580-mRNA-1:cds;Parent=Msa0475580-mRNA-1
chr3_3 CDS 78834821 78834937 78834821 ID=Msa0475580-mRNA-1:cds;Parent=Msa0475580-mRNA-1
chr3_3 CDS 78835079 78835099 78835079 ID=Msa0475580-mRNA-1:cds;Parent=Msa0475580-mRNA-1
chr3_3 three_prime_UTR 78835100 78835339 78835100 ID=Msa0475580-mRNA-1:three_prime_utr;Parent=Msa0475580-mRNA-1
Gene Sequence

>Msa0475580

ATGGGTGGTGCGATTCCAGAAAACCTAAACAGAGAACAGTATGTGTACCTAGCAAAACTCGCAGAACAAGCTGAACGCTACGAGGAGATGGTCTCCTTCATGCAGAAGCTTGTAGTGGGGTCCACACCATCATCAGAGCTTAGCGTCGAAGAGAGGAACCTCATATCCGTCGCTTACAAGAACGTGATCGGATCGCTACGTGCTGCGTGGAGAATCGTTTCTTCGATTGAACAGAAGGAAGAAGGTAGAAAGAACGAAGATCATGTTGTGCTTGTGAAGGATTACAGATCCAAAGTTGAATCAGAGTTAACGAATGTTTGTGGTAGTATTCTGGAGTTGTTGGATTCGAATCTTATACCTTCTGCTTCTTCAAGTGAAAGTAAGGTTTTTTATTATAAGATGAAGGGTGATTATCATAGGTATTTGGCTGAGTTTAAGATTGGTGATGAGAAAAAATCTGCTGCTGAGGATACTATGTTGTCTTACAAAGCTGCACAGGATATTGCTGCTGCGGATCTTCCATCAACTCATCCTATAAGATTGGGTTTGGCTCTGAATTTCTCTGTTTTCTATTATGAAATTCTCAATCAATCTGACAAAGCTTGTGACATGGCCAAACAGGTCAACTTGATAAGAAGTTTTCTGACCTTGTTTGGTCAAGCAATTTTAAGCCACAAAGATTCTGTTATGTTGAAAAATTCAACACTAATTGCTGAGGCTTTTGAGGAAGCAATTGCTGAACTGGACACATTAGGAGAAGAATCCTACAAAGACAGCACACTTATAATGCAACTTTTGAGAGACAACCTCACCCTTTGGACTTCTGATGTCCAGGACCAGCTAGATGAGCCTTGA

Protein sequence

>Msa0475580

MGGAIPENLNREQYVYLAKLAEQAERYEEMVSFMQKLVVGSTPSSELSVEERNLISVAYKNVIGSLRAAWRIVSSIEQKEEGRKNEDHVVLVKDYRSKVESELTNVCGSILELLDSNLIPSASSSESKVFYYKMKGDYHRYLAEFKIGDEKKSAAEDTMLSYKAAQDIAAADLPSTHPIRLGLALNFSVFYYEILNQSDKACDMAKQVNLIRSFLTLFGQAILSHKDSVMLKNSTLIAEAFEEAIAELDTLGEESYKDSTLIMQLLRDNLTLWTSDVQDQLDEP*