Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1115140 | XP_003623305.1 | 99.492 | 394 | 2 | 0 | 1 | 394 | 1 | 394 | 0.0 | 803 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1115140 | sp|M1CZC0|EBP1_SOLTU | 88.083 | 386 | 45 | 1 | 1 | 385 | 1 | 386 | 0.0 | 676 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1115140 | G7KSA2 | 99.492 | 394 | 2 | 0 | 1 | 394 | 1 | 394 | 0.0 | 803 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1058700 | Msa1115140 | 0.802357 | 5.829282e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1115140 | MtrunA17_Chr7g0242891 | 99.492 | 394 | 2 | 0 | 1 | 394 | 1 | 394 | 0.0 | 803 |
| Msa1115140 | MtrunA17_Chr2g0316491 | 86.041 | 394 | 50 | 1 | 1 | 394 | 1 | 389 | 0.0 | 673 |
| Msa1115140 | MtrunA17_Chr1g0206751 | 25.301 | 332 | 214 | 8 | 7 | 323 | 20 | 332 | 5.54e-29 | 115 |
| Msa1115140 | MtrunA17_Chr4g0061151 | 25.301 | 332 | 214 | 8 | 7 | 323 | 101 | 413 | 1.51e-28 | 115 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1115140 | AT3G51800.3 | 77.892 | 389 | 78 | 2 | 2 | 390 | 3 | 383 | 0.0 | 606 |
| Msa1115140 | AT3G51800.1 | 78.920 | 389 | 81 | 1 | 2 | 390 | 3 | 390 | 0.0 | 595 |
| Msa1115140 | AT3G51800.2 | 77.136 | 398 | 81 | 2 | 2 | 390 | 3 | 399 | 0.0 | 586 |
| Msa1115140 | AT2G44180.1 | 24.925 | 333 | 214 | 9 | 7 | 323 | 117 | 429 | 2.37e-28 | 115 |
| Msa1115140 | AT3G59990.4 | 25.602 | 332 | 213 | 8 | 7 | 323 | 115 | 427 | 2.53e-28 | 115 |
| Msa1115140 | AT3G59990.3 | 25.602 | 332 | 213 | 8 | 7 | 323 | 115 | 427 | 2.53e-28 | 115 |
| Msa1115140 | AT3G59990.1 | 25.602 | 332 | 213 | 8 | 7 | 323 | 115 | 427 | 2.53e-28 | 115 |
| Msa1115140 | AT3G59990.2 | 25.602 | 332 | 213 | 8 | 7 | 323 | 115 | 427 | 2.53e-28 | 115 |
| Msa1115140 | AT2G44180.2 | 25.155 | 322 | 205 | 9 | 18 | 323 | 8 | 309 | 3.42e-27 | 110 |
Find 109 sgRNAs with CRISPR-Local
Find 297 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCCTTGCAGCCTAAGTTAT+TGG | 0.168042 | 7_3:-62312027 | Msa1115140:intron |
| GGGTTTGTGAAGTTGAAATT+AGG | 0.228313 | 7_3:+62315856 | None:intergenic |
| TCTGACACCCCTTTCAGTTT+TGG | 0.255511 | 7_3:-62311090 | Msa1115140:three_prime_UTR |
| GGCTTTGAAGTTAGTTATTT+CGG | 0.260686 | 7_3:-62315177 | Msa1115140:CDS |
| ACCAAAATTCATATCCAAAA+AGG | 0.288538 | 7_3:+62311046 | None:intergenic |
| TTCAATGAAGAGGCAAGTTT+TGG | 0.308116 | 7_3:+62315881 | None:intergenic |
| CTTCAGGAAGGTCCGGTTAC+TGG | 0.308248 | 7_3:-62314478 | Msa1115140:CDS |
| CAATTGATTACCTTCTTTCC+TGG | 0.318576 | 7_3:+62314391 | None:intergenic |
| TTTCAATGGTTGCAGTGATT+TGG | 0.324960 | 7_3:-62314548 | Msa1115140:intron |
| GATTTGGCTTGTCATATAGA+TGG | 0.329871 | 7_3:-62314532 | Msa1115140:CDS |
| GGCTCACACTCATGTTCTTC+AGG | 0.336230 | 7_3:-62314494 | Msa1115140:CDS |
| AATGAAGAGTAACGAAGAAA+TGG | 0.339741 | 7_3:+62315805 | None:intergenic |
| TAGAGTTACCTAGCAGAAAA+TGG | 0.347063 | 7_3:+62311894 | None:intergenic |
| CTAGCAGAAAATGGCATGAT+TGG | 0.364270 | 7_3:+62311903 | None:intergenic |
| GGTTTGTGAAGTTGAAATTA+GGG | 0.373912 | 7_3:+62315857 | None:intergenic |
| ACACTCTCATTATAGGGCTT+TGG | 0.377018 | 7_3:-62311803 | Msa1115140:intron |
| AACAGAGAAATTGTTATGCT+TGG | 0.377382 | 7_3:-62310967 | Msa1115140:three_prime_UTR |
| AATTAAGTTCAACTATTGTA+TGG | 0.382802 | 7_3:+62310904 | None:intergenic |
| AAGAGCTCGCCTTGGTTTAG+TGG | 0.392978 | 7_3:-62311773 | Msa1115140:CDS |
| TCCTGGCCTTACAAGCCTTA+AGG | 0.393010 | 7_3:+62314408 | None:intergenic |
| GCCTCATTTGTTGAGTCCAC+TGG | 0.400790 | 7_3:+62311181 | None:intergenic |
| GTTGTCGACATTTGCGAGAA+AGG | 0.407425 | 7_3:-62315134 | Msa1115140:CDS |
| TCTGCTGCCCGTCCAGTAAC+CGG | 0.409183 | 7_3:+62314466 | None:intergenic |
| TTGTATTTGGTTACAACATC+AGG | 0.409580 | 7_3:+62315587 | None:intergenic |
| CTTCTTTGTCTTTGTGCCCA+AGG | 0.418183 | 7_3:+62311472 | None:intergenic |
| TTGAAGCAGTTTGTGATTGA+CGG | 0.419108 | 7_3:-62312234 | Msa1115140:CDS |
| AGGTTGCCTTAAGGCTTGTA+AGG | 0.421762 | 7_3:-62314414 | Msa1115140:CDS |
| TGTGTTGTTAACAGAAATAC+AGG | 0.425225 | 7_3:+62314711 | None:intergenic |
| ATGTCGACAACCTTGGCCTT+CGG | 0.440220 | 7_3:+62315146 | None:intergenic |
| CTCTCATTATAGGGCTTTGG+AGG | 0.442202 | 7_3:-62311800 | Msa1115140:intron |
| AGCAGACAACTATTTATAAG+AGG | 0.448471 | 7_3:-62311998 | Msa1115140:CDS |
| ACGGTCTTGTTAATGCCAAA+TGG | 0.460902 | 7_3:-62311578 | Msa1115140:CDS |
| GGCTAGCCATGCCTTGATCT+CGG | 0.460904 | 7_3:+62311493 | None:intergenic |
| CAATCACAAACTGCTTCAAT+TGG | 0.462473 | 7_3:+62312238 | None:intergenic |
| GCATCATCAACCCTTGTATC+CGG | 0.463945 | 7_3:+62312183 | None:intergenic |
| ATTGATATAGTGACAAGTAC+TGG | 0.464133 | 7_3:-62312132 | Msa1115140:CDS |
| TGTACTTAGTATCTCTAATC+CGG | 0.469904 | 7_3:-62312202 | Msa1115140:CDS |
| GTATCTCTAATCCGGATACA+AGG | 0.471369 | 7_3:-62312194 | Msa1115140:CDS |
| CTGCTGCTGAGGTTGCCTTA+AGG | 0.471559 | 7_3:-62314423 | Msa1115140:CDS |
| ATGAAGAGTAACGAAGAAAT+GGG | 0.473147 | 7_3:+62315806 | None:intergenic |
| GCTAGCCATGCCTTGATCTC+GGG | 0.479085 | 7_3:+62311494 | None:intergenic |
| TGTTGCACACATCAAATTCA+CGG | 0.479497 | 7_3:-62311597 | Msa1115140:CDS |
| CTCGCAAATGTCGACAACCT+TGG | 0.479959 | 7_3:+62315139 | None:intergenic |
| TCACAAACTGCTTCAATTGG+TGG | 0.483001 | 7_3:+62312241 | None:intergenic |
| TGAAAGGGAGGAGAAGGAGT+TGG | 0.485440 | 7_3:-62315621 | Msa1115140:CDS |
| GATCAAGGCATGGCTAGCCT+TGG | 0.487132 | 7_3:-62311489 | Msa1115140:CDS |
| GCCTTAAGGCTTGTAAGGCC+AGG | 0.487319 | 7_3:-62314409 | Msa1115140:CDS |
| AACAAATGAGGCCACATCTC+AGG | 0.488049 | 7_3:-62311170 | Msa1115140:CDS |
| ATTTGGCTTGTCATATAGAT+GGG | 0.489793 | 7_3:-62314531 | Msa1115140:CDS |
| GGATGATGAAAGGGAGGAGA+AGG | 0.490206 | 7_3:-62315627 | Msa1115140:CDS |
| GTGACGCGGTCCGATCCATT+TGG | 0.494501 | 7_3:+62311563 | None:intergenic |
| GGAAGGTCCGGTTACTGGAC+GGG | 0.495529 | 7_3:-62314473 | Msa1115140:CDS |
| TCATGTTCTTCAGGAAGGTC+CGG | 0.498470 | 7_3:-62314485 | Msa1115140:CDS |
| TGTATCTGATGCAATTCAAA+AGG | 0.498979 | 7_3:-62312307 | Msa1115140:CDS |
| GCTTGTAAGGCCAGGAAAGA+AGG | 0.499294 | 7_3:-62314401 | Msa1115140:intron |
| GATAGATGATCCCGAGATCA+AGG | 0.503858 | 7_3:-62311504 | Msa1115140:CDS |
| ATCAAGGCATGGCTAGCCTT+GGG | 0.514968 | 7_3:-62311488 | Msa1115140:CDS |
| CACCATGTCGGATGATGAAA+GGG | 0.519119 | 7_3:-62315636 | Msa1115140:exon |
| CCTGTTCTGCATGAAAAGCC+TGG | 0.520705 | 7_3:-62311718 | Msa1115140:intron |
| GGCAAAGATTCGAAGAAATG+AGG | 0.521603 | 7_3:+62315835 | None:intergenic |
| GGCTGCAAACACTGCTGCTG+AGG | 0.522569 | 7_3:-62314434 | Msa1115140:CDS |
| CACTGGCTAGAGGAGAGAAA+TGG | 0.524226 | 7_3:+62314683 | None:intergenic |
| ACAATGTACCAAAACTGAAA+GGG | 0.525017 | 7_3:+62311082 | None:intergenic |
| GACAGCAGAAGCTGAGCCAG+TGG | 0.530153 | 7_3:-62311197 | Msa1115140:CDS |
| GCACCATGTCGGATGATGAA+AGG | 0.530984 | 7_3:-62315637 | Msa1115140:exon |
| GGTTGATGATGCAGAGTTCG+AGG | 0.533562 | 7_3:-62312172 | Msa1115140:CDS |
| GTCAATTCATTCCTGAGATG+TGG | 0.541149 | 7_3:+62311159 | None:intergenic |
| CTCCCTTTCATCATCCGACA+TGG | 0.542242 | 7_3:+62315634 | None:intergenic |
| AACAATGTACCAAAACTGAA+AGG | 0.547449 | 7_3:+62311081 | None:intergenic |
| AAATTAGGGTTTCAATGAAG+AGG | 0.551997 | 7_3:+62315871 | None:intergenic |
| TGTTAACAGAAATACAGGTC+GGG | 0.556626 | 7_3:+62314716 | None:intergenic |
| GACAAGTACTGGAGAAGGCA+AGG | 0.561868 | 7_3:-62312121 | Msa1115140:intron |
| GTGAAGAAGAAGATAGAGAG+AGG | 0.562003 | 7_3:-62314748 | Msa1115140:CDS |
| GTGGGCTGCAATTCTTGGAG+TGG | 0.565750 | 7_3:+62311533 | None:intergenic |
| CACACTCATGTTCTTCAGGA+AGG | 0.570548 | 7_3:-62314490 | Msa1115140:CDS |
| AGATGGGTTCATTGCTGCTG+TGG | 0.571546 | 7_3:-62314515 | Msa1115140:CDS |
| GAGGAGAAAAGAGCTCGCCT+TGG | 0.572936 | 7_3:-62311781 | Msa1115140:CDS |
| GATGAGACTGTGTTGGAAGA+AGG | 0.573982 | 7_3:-62314661 | Msa1115140:CDS |
| GTTTGTGATTGACGGTAACA+AGG | 0.574284 | 7_3:-62312226 | Msa1115140:CDS |
| GCAAAGATTCGAAGAAATGA+GGG | 0.577017 | 7_3:+62315836 | None:intergenic |
| CTTGTTAATGCCAAATGGAT+CGG | 0.579184 | 7_3:-62311573 | Msa1115140:CDS |
| AGCCAGTGATGAGACTGTGT+TGG | 0.580099 | 7_3:-62314668 | Msa1115140:CDS |
| TGCCTATGATTGTAAAATTG+TGG | 0.582084 | 7_3:-62312277 | Msa1115140:CDS |
| GGCACAAAGACAAAGAAGAA+AGG | 0.585592 | 7_3:-62311467 | Msa1115140:CDS |
| AGGAAGGTCCGGTTACTGGA+CGG | 0.589047 | 7_3:-62314474 | Msa1115140:CDS |
| GCAGACAACTATTTATAAGA+GGG | 0.589806 | 7_3:-62311997 | Msa1115140:CDS |
| TTCCAACACAGTCTCATCAC+TGG | 0.591026 | 7_3:+62314666 | None:intergenic |
| GCCAGTGGACTCAACAAATG+AGG | 0.599556 | 7_3:-62311182 | Msa1115140:CDS |
| AAGACAAAGAAGAAAGGTGG+CGG | 0.600977 | 7_3:-62311461 | Msa1115140:CDS |
| ATAGTGACAAGTACTGGAGA+AGG | 0.607460 | 7_3:-62312126 | Msa1115140:CDS |
| TTGTTAACAGAAATACAGGT+CGG | 0.613871 | 7_3:+62314715 | None:intergenic |
| TTCAGGTAAGAAAGAGGACA+AGG | 0.622867 | 7_3:-62311227 | Msa1115140:intron |
| CAATGTACCAAAACTGAAAG+GGG | 0.625114 | 7_3:+62311083 | None:intergenic |
| GGAATGTAAACCGAAGGCCA+AGG | 0.630468 | 7_3:-62315156 | Msa1115140:CDS |
| TATTTCGGAATGTAAACCGA+AGG | 0.632205 | 7_3:-62315162 | Msa1115140:CDS |
| ACTTGAAGATGAAAGCATCT+CGG | 0.634545 | 7_3:-62311956 | Msa1115140:CDS |
| TATCTCTAATCCGGATACAA+GGG | 0.635855 | 7_3:-62312193 | Msa1115140:CDS |
| TGCTTCTCATCCAATAACTT+AGG | 0.637623 | 7_3:+62312017 | None:intergenic |
| ACAAAGACAAAGAAGAAAGG+TGG | 0.644797 | 7_3:-62311464 | Msa1115140:CDS |
| CATCAAGGATTGAACAAGTG+AGG | 0.646955 | 7_3:-62315659 | Msa1115140:five_prime_UTR |
| CTATGATTGTAAAATTGTGG+AGG | 0.650809 | 7_3:-62312274 | Msa1115140:CDS |
| ACAGTCTCATCACTGGCTAG+AGG | 0.652364 | 7_3:+62314673 | None:intergenic |
| CATGTCGGATGATGAAAGGG+AGG | 0.672723 | 7_3:-62315633 | Msa1115140:CDS |
| TATGATTGTAAAATTGTGGA+GGG | 0.685880 | 7_3:-62312273 | Msa1115140:CDS |
| ATGATCCCGAGATCAAGGCA+TGG | 0.688022 | 7_3:-62311499 | Msa1115140:CDS |
| GAACAAGTGAGGCACCATGT+CGG | 0.693904 | 7_3:-62315648 | Msa1115140:exon |
| TCATACATTCCACTAAACCA+AGG | 0.697995 | 7_3:+62311764 | None:intergenic |
| ACGGGCAGCAGATGTCATTG+CGG | 0.708638 | 7_3:-62314455 | Msa1115140:CDS |
| GGAGTGGATGAGATGTGACG+CGG | 0.801724 | 7_3:+62311549 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTAAATATTTTAATTTAA+AGG | - | chr7_3:62313710-62313729 | Msa1115140:intron | 0.0% |
| !!! | TTGTTAATTTTACTTATTTT+TGG | - | chr7_3:62311426-62311445 | Msa1115140:intron | 10.0% |
| !!! | TTACTTTTTACTTATTTTTT+TGG | - | chr7_3:62311600-62311619 | Msa1115140:CDS | 10.0% |
| !! | AATATAATACATATAAATGA+GGG | + | chr7_3:62312463-62312482 | None:intergenic | 10.0% |
| !! | AATTAATATTGAAAAATGAA+GGG | + | chr7_3:62313223-62313242 | None:intergenic | 10.0% |
| !! | TAATTAATATTGAAAAATGA+AGG | + | chr7_3:62313224-62313243 | None:intergenic | 10.0% |
| !! | AGTTAAAAAAAAAAAAATGT+TGG | + | chr7_3:62313450-62313469 | None:intergenic | 10.0% |
| !! | ATATCATAAAACATTAATAT+TGG | - | chr7_3:62314218-62314237 | Msa1115140:intron | 10.0% |
| !!! | TTTTGTTTGAATTTTTCATT+TGG | - | chr7_3:62311124-62311143 | Msa1115140:three_prime_UTR | 15.0% |
| !!! | TTTGTTTGAATTTTTCATTT+GGG | - | chr7_3:62311125-62311144 | Msa1115140:three_prime_UTR | 15.0% |
| !!! | GTTTTTGTTAATTCATAAAT+TGG | - | chr7_3:62311324-62311343 | Msa1115140:intron | 15.0% |
| !!! | AAATTTATTGACTTTAACTT+AGG | - | chr7_3:62311353-62311372 | Msa1115140:intron | 15.0% |
| !!! | TTTTGTTAATTTTCATTTCT+CGG | - | chr7_3:62311387-62311406 | Msa1115140:intron | 15.0% |
| !! | ATATTTCTTTATACAATCAA+CGG | + | chr7_3:62311922-62311941 | None:intergenic | 15.0% |
| !! | GTATAAAGAAATATTGTATT+TGG | - | chr7_3:62311928-62311947 | Msa1115140:CDS | 15.0% |
| !! | CAATATAATACATATAAATG+AGG | + | chr7_3:62312464-62312483 | None:intergenic | 15.0% |
| !! | TTTACTTTATAACATATTTG+TGG | - | chr7_3:62313016-62313035 | Msa1115140:intron | 15.0% |
| !! | ATATGATAAAACTGTAATAT+TGG | - | chr7_3:62313303-62313322 | Msa1115140:intron | 15.0% |
| !!! | TTTTATCATATATAAGTATC+AGG | + | chr7_3:62313762-62313781 | None:intergenic | 15.0% |
| !! | ATATGATAAAACTGTAATAT+TGG | - | chr7_3:62313303-62313322 | Msa1115140:intron | 15.0% |
| !! | TATTAGTTCAATAATTCATA+CGG | + | chr7_3:62314764-62314783 | None:intergenic | 15.0% |
| !!! | ATGAAAAACATTTCTTTTTT+GGG | + | chr7_3:62315700-62315719 | None:intergenic | 15.0% |
| !!! | AATGAAAAACATTTCTTTTT+TGG | + | chr7_3:62315701-62315720 | None:intergenic | 15.0% |
| !!! | TTTATTTTCTAATTCCATCT+TGG | - | chr7_3:62311302-62311321 | Msa1115140:intron | 20.0% |
| !!! | TTTTATTTGCGAATTTGAAA+TGG | - | chr7_3:62311465-62311484 | Msa1115140:CDS | 20.0% |
| !!! | TTTATTTGCGAATTTGAAAT+GGG | - | chr7_3:62311466-62311485 | Msa1115140:CDS | 20.0% |
| !!! | TTTATTTCTCGATTAGTTTA+AGG | - | chr7_3:62311537-62311556 | Msa1115140:CDS | 20.0% |
| !!! | CTTATGATGTTTTCTTTTAT+TGG | - | chr7_3:62312015-62312034 | Msa1115140:CDS | 20.0% |
| !! | TACAATTTCAATCAAAAAAG+AGG | + | chr7_3:62312883-62312902 | None:intergenic | 20.0% |
| !!! | TTTTATCATATGTAAGTATC+AGG | + | chr7_3:62313294-62313313 | None:intergenic | 20.0% |
| !! | TCAATAAAAAACACAAACAA+AGG | + | chr7_3:62313650-62313669 | None:intergenic | 20.0% |
| !!! | TTCACTAAATTATACCTTTT+TGG | - | chr7_3:62315758-62315777 | Msa1115140:intron | 20.0% |
| ! | GTATCAAAACAATGAAGAAT+TGG | + | chr7_3:62311074-62311093 | None:intergenic | 25.0% |
| !! | AATCAAATTTTTCCCCAATT+GGG | + | chr7_3:62311096-62311115 | None:intergenic | 25.0% |
| !! | AAATCAAATTTTTCCCCAAT+TGG | + | chr7_3:62311097-62311116 | None:intergenic | 25.0% |
| !!! | ATTTTTCATTTGGGTTTTTC+AGG | - | chr7_3:62311134-62311153 | Msa1115140:three_prime_UTR | 25.0% |
| ! | TGAATTAACAAAAACCAAGA+TGG | + | chr7_3:62311319-62311338 | None:intergenic | 25.0% |
| ! | TCAATATTTAGATTCTGTGA+AGG | - | chr7_3:62311815-62311834 | Msa1115140:intron | 25.0% |
| ! | TAATGATGCATTTCTTTCAA+TGG | - | chr7_3:62312256-62312275 | Msa1115140:CDS | 25.0% |
| ! | TTTAGAGATCAAAATTCACA+AGG | + | chr7_3:62312618-62312637 | None:intergenic | 25.0% |
| ! | TTTGTTCATTTCAGATTACT+TGG | - | chr7_3:62312812-62312831 | Msa1115140:intron | 25.0% |
| ! | GGTTGAATAAAATGTACAAA+AGG | + | chr7_3:62312851-62312870 | None:intergenic | 25.0% |
| !!! | AGCTTTATCTTTTGTCTATT+TGG | - | chr7_3:62313258-62313277 | Msa1115140:intron | 25.0% |
| !!! | ACGAAAGTTTTTTGTTTTGA+AGG | + | chr7_3:62313493-62313512 | None:intergenic | 25.0% |
| !!! | GTAAATTTGATTTGATGAAC+TGG | - | chr7_3:62313511-62313530 | Msa1115140:intron | 25.0% |
| ! | CTATATGATGAATACATCAT+AGG | - | chr7_3:62313537-62313556 | Msa1115140:intron | 25.0% |
| ! | AGTGAGTATTTATGATACAA+AGG | + | chr7_3:62313625-62313644 | None:intergenic | 25.0% |
| !!! | GCTGTTTTGATTTATATTGT+CGG | - | chr7_3:62313877-62313896 | Msa1115140:intron | 25.0% |
| ! | GTAAAAAAACCAAGATATGT+TGG | + | chr7_3:62313921-62313940 | None:intergenic | 25.0% |
| ! | GTTTAAATATTGTACCATGT+TGG | + | chr7_3:62314365-62314384 | None:intergenic | 25.0% |
| ! | TATGATTGTAAAATTGTGGA+GGG | - | chr7_3:62314545-62314564 | Msa1115140:intron | 25.0% |
| ! | AGTGGACATATAATCAAAAT+CGG | + | chr7_3:62314988-62315007 | None:intergenic | 25.0% |
| ! | TACAATAACACTCTCATTAT+AGG | - | chr7_3:62315008-62315027 | Msa1115140:intron | 25.0% |
| ! | ACAATAACACTCTCATTATA+GGG | - | chr7_3:62315009-62315028 | Msa1115140:intron | 25.0% |
| ! | TGCATATGATGTAATACTAT+AGG | - | chr7_3:62315527-62315546 | Msa1115140:intron | 25.0% |
| !! | ACCTTTTTGGATATGAATTT+TGG | - | chr7_3:62315771-62315790 | Msa1115140:intron | 25.0% |
| ! | ACCAAAATTCATATCCAAAA+AGG | + | chr7_3:62315775-62315794 | None:intergenic | 25.0% |
| AAATTAGGGTTTCAATGAAG+AGG | + | chr7_3:62310950-62310969 | None:intergenic | 30.0% | |
| GGTTTGTGAAGTTGAAATTA+GGG | + | chr7_3:62310964-62310983 | None:intergenic | 30.0% | |
| ATGAAGAGTAACGAAGAAAT+GGG | + | chr7_3:62311015-62311034 | None:intergenic | 30.0% | |
| AATGAAGAGTAACGAAGAAA+TGG | + | chr7_3:62311016-62311035 | None:intergenic | 30.0% | |
| !!! | TCATTGTTTTGATACCCAAT+TGG | - | chr7_3:62311079-62311098 | Msa1115140:three_prime_UTR | 30.0% |
| !!! | CATTGTTTTGATACCCAATT+GGG | - | chr7_3:62311080-62311099 | Msa1115140:three_prime_UTR | 30.0% |
| !!! | ATTGTTTTGATACCCAATTG+GGG | - | chr7_3:62311081-62311100 | Msa1115140:three_prime_UTR | 30.0% |
| TTGTATTTGGTTACAACATC+AGG | + | chr7_3:62311234-62311253 | None:intergenic | 30.0% | |
| !! | TTCATTTCTCGGTTAGTTTA+AGG | - | chr7_3:62311398-62311417 | Msa1115140:intron | 30.0% |
| !! | GGCTTTGAAGTTAGTTATTT+CGG | - | chr7_3:62311641-62311660 | Msa1115140:intron | 30.0% |
| ACAATCAACGGTTATTATCA+CGG | + | chr7_3:62311910-62311929 | None:intergenic | 30.0% | |
| !!! | GTTTTCTTTTATTGGTGTCA+AGG | - | chr7_3:62312023-62312042 | Msa1115140:intron | 30.0% |
| TTGTTAACAGAAATACAGGT+CGG | + | chr7_3:62312106-62312125 | None:intergenic | 30.0% | |
| ! | TGTGTTGTTAACAGAAATAC+AGG | + | chr7_3:62312110-62312129 | None:intergenic | 30.0% |
| !! | ATTTGGCTTGTCATATAGAT+GGG | - | chr7_3:62312287-62312306 | Msa1115140:CDS | 30.0% |
| ACTTATAACCTATCTACATG+TGG | + | chr7_3:62312520-62312539 | None:intergenic | 30.0% | |
| GTTATAAGTCAGTGTCAATA+TGG | - | chr7_3:62312531-62312550 | Msa1115140:intron | 30.0% | |
| ATGAAAACTAATCATGAGCT+AGG | - | chr7_3:62312640-62312659 | Msa1115140:intron | 30.0% | |
| TCAAAAAAGAGGTGACATAT+CGG | + | chr7_3:62312872-62312891 | None:intergenic | 30.0% | |
| !!! | CTCTCAAAACTGTCTTATTT+TGG | - | chr7_3:62312991-62313010 | Msa1115140:intron | 30.0% |
| AGTGTAACTATGACAAAAAC+AGG | + | chr7_3:62313108-62313127 | None:intergenic | 30.0% | |
| ! | TTTTGTCATAGTTACACTGA+TGG | - | chr7_3:62313110-62313129 | Msa1115140:intron | 30.0% |
| ATAAATACCCATATCCCTTT+GGG | - | chr7_3:62313155-62313174 | Msa1115140:intron | 30.0% | |
| AAATTGCTTGAAGTATGACA+AGG | + | chr7_3:62313195-62313214 | None:intergenic | 30.0% | |
| ATATGTAAGTATCAGGATTC+AGG | + | chr7_3:62313287-62313306 | None:intergenic | 30.0% | |
| !! | CAATATGATTTTGATCACCT+CGG | + | chr7_3:62313337-62313356 | None:intergenic | 30.0% |
| AGTGTAACTATGACATAAAC+AGG | + | chr7_3:62313585-62313604 | None:intergenic | 30.0% | |
| TTATGTCATAGTTACACTGA+TGG | - | chr7_3:62313587-62313606 | Msa1115140:intron | 30.0% | |
| AAATTGCTTGAAGTATGACA+AGG | + | chr7_3:62313195-62313214 | None:intergenic | 30.0% | |
| !! | CAATATGATTTTGATCACCT+CGG | + | chr7_3:62313337-62313356 | None:intergenic | 30.0% |
| CTATATGATGAATACATCGT+AGG | - | chr7_3:62313979-62313998 | Msa1115140:intron | 30.0% | |
| AGTGTAACTATGACATAAAC+AGG | + | chr7_3:62313585-62313604 | None:intergenic | 30.0% | |
| AGTGGGTATTTATGAAACAA+AGG | + | chr7_3:62314067-62314086 | None:intergenic | 30.0% | |
| CAATAGAAAACACAACCAAA+GGG | + | chr7_3:62314091-62314110 | None:intergenic | 30.0% | |
| TCAATAGAAAACACAACCAA+AGG | + | chr7_3:62314092-62314111 | None:intergenic | 30.0% | |
| AAATAACTTGAAGCATGACA+AGG | + | chr7_3:62314115-62314134 | None:intergenic | 30.0% | |
| !! | ATTTTCTAGTATAGCCAACA+TGG | - | chr7_3:62313433-62313452 | Msa1115140:intron | 30.0% |
| AAATTTCCTGAGTTGTAGTA+GGG | - | chr7_3:62314447-62314466 | Msa1115140:CDS | 30.0% | |
| ! | ATACTTTTCTTGACAGAACA+AGG | - | chr7_3:62314487-62314506 | Msa1115140:CDS | 30.0% |
| TGTATCTGATGCAATTCAAA+AGG | - | chr7_3:62314511-62314530 | Msa1115140:CDS | 30.0% | |
| TGCCTATGATTGTAAAATTG+TGG | - | chr7_3:62314541-62314560 | Msa1115140:intron | 30.0% | |
| ! | CTCCACAATTTTACAATCAT+AGG | + | chr7_3:62314546-62314565 | None:intergenic | 30.0% |
| CTATGATTGTAAAATTGTGG+AGG | - | chr7_3:62314544-62314563 | Msa1115140:intron | 30.0% | |
| TGTACTTAGTATCTCTAATC+CGG | - | chr7_3:62314616-62314635 | Msa1115140:intron | 30.0% | |
| ATTGATATAGTGACAAGTAC+TGG | - | chr7_3:62314686-62314705 | Msa1115140:CDS | 30.0% | |
| AGCAGACAACTATTTATAAG+AGG | - | chr7_3:62314820-62314839 | Msa1115140:intron | 30.0% | |
| GCAGACAACTATTTATAAGA+GGG | - | chr7_3:62314821-62314840 | Msa1115140:intron | 30.0% | |
| ! | ATGGCATGATTGGAAATTTT+TGG | + | chr7_3:62314908-62314927 | None:intergenic | 30.0% |
| AAATCGGAACTTAAACTTGA+TGG | + | chr7_3:62314972-62314991 | None:intergenic | 30.0% | |
| !! | AATGAGAGTGTTATTGTAAG+TGG | + | chr7_3:62315006-62315025 | None:intergenic | 30.0% |
| ! | AAGCCTGGTAATTTTTCTAT+AGG | - | chr7_3:62315115-62315134 | Msa1115140:intron | 30.0% |
| TTGCCTATAGAAAAATTACC+AGG | + | chr7_3:62315121-62315140 | None:intergenic | 30.0% | |
| AACAGTATAGCAAGAAGTTT+AGG | + | chr7_3:62315184-62315203 | None:intergenic | 30.0% | |
| TAAATACAAAAGCGACATGA+TGG | + | chr7_3:62315462-62315481 | None:intergenic | 30.0% | |
| ! | TTTTTGTTCAGGTAAGAAAG+AGG | - | chr7_3:62315585-62315604 | Msa1115140:CDS | 30.0% |
| !!! | ACATTTCTTTTTTGGGATTG+AGG | + | chr7_3:62315693-62315712 | None:intergenic | 30.0% |
| ACAATGTACCAAAACTGAAA+GGG | + | chr7_3:62315739-62315758 | None:intergenic | 30.0% | |
| AACAATGTACCAAAACTGAA+AGG | + | chr7_3:62315740-62315759 | None:intergenic | 30.0% | |
| AACAGAGAAATTGTTATGCT+TGG | - | chr7_3:62315851-62315870 | Msa1115140:five_prime_UTR | 30.0% | |
| !!! | AGGCAAGTTTTGGCTTATAT+AGG | + | chr7_3:62310930-62310949 | None:intergenic | 35.0% |
| ! | TTCAATGAAGAGGCAAGTTT+TGG | + | chr7_3:62310940-62310959 | None:intergenic | 35.0% |
| GGGTTTGTGAAGTTGAAATT+AGG | + | chr7_3:62310965-62310984 | None:intergenic | 35.0% | |
| GCAAAGATTCGAAGAAATGA+GGG | + | chr7_3:62310985-62311004 | None:intergenic | 35.0% | |
| !! | TAACGAAGAAATGGGTTTTG+CGG | + | chr7_3:62311007-62311026 | None:intergenic | 35.0% |
| !! | TGGATTTGTTTGTTATGCAG+AGG | - | chr7_3:62311620-62311639 | Msa1115140:intron | 35.0% |
| TATTTCGGAATGTAAACCGA+AGG | - | chr7_3:62311656-62311675 | Msa1115140:intron | 35.0% | |
| TGTTAACAGAAATACAGGTC+GGG | + | chr7_3:62312105-62312124 | None:intergenic | 35.0% | |
| TTTCAATGGTTGCAGTGATT+TGG | - | chr7_3:62312270-62312289 | Msa1115140:CDS | 35.0% | |
| !! | GATTTGGCTTGTCATATAGA+TGG | - | chr7_3:62312286-62312305 | Msa1115140:CDS | 35.0% |
| CAATTGATTACCTTCTTTCC+TGG | + | chr7_3:62312430-62312449 | None:intergenic | 35.0% | |
| ! | ACTTTGTTTGTTGCATCTGA+AGG | - | chr7_3:62312582-62312601 | Msa1115140:intron | 35.0% |
| ! | CTTTGTTTGTTGCATCTGAA+GGG | - | chr7_3:62312583-62312602 | Msa1115140:intron | 35.0% |
| GATCAAAATTCACAAGGCAA+AGG | + | chr7_3:62312612-62312631 | None:intergenic | 35.0% | |
| AGCTAGGATTAAATCCAATG+AGG | - | chr7_3:62312656-62312675 | Msa1115140:intron | 35.0% | |
| CTATGACAATAAAGCCTCAT+TGG | + | chr7_3:62312673-62312692 | None:intergenic | 35.0% | |
| TGTCATAGTTACACTGATAG+AGG | - | chr7_3:62312685-62312704 | Msa1115140:intron | 35.0% | |
| ! | ACGCAACTTTTGTGGTTAAA+TGG | + | chr7_3:62312744-62312763 | None:intergenic | 35.0% |
| ! | AAGAAAAGACGCAACTTTTG+TGG | + | chr7_3:62312752-62312771 | None:intergenic | 35.0% |
| TGAGAGAGACTGAAAAAACT+GGG | + | chr7_3:62312977-62312996 | None:intergenic | 35.0% | |
| TTGAGAGAGACTGAAAAAAC+TGG | + | chr7_3:62312978-62312997 | None:intergenic | 35.0% | |
| CTACATGATGAATACGTCAT+AGG | - | chr7_3:62313061-62313080 | Msa1115140:intron | 35.0% | |
| ATGACAAAAACAGGCTTCAT+TGG | + | chr7_3:62313099-62313118 | None:intergenic | 35.0% | |
| CATAAATACCCATATCCCTT+TGG | - | chr7_3:62313154-62313173 | Msa1115140:intron | 35.0% | |
| GATGAATACATCATAGGCTA+TGG | - | chr7_3:62313543-62313562 | Msa1115140:intron | 35.0% | |
| ATGACATAAACAGGCTTCAT+TGG | + | chr7_3:62313576-62313595 | None:intergenic | 35.0% | |
| CGAGGTGATCAAAATCATAT+TGG | - | chr7_3:62313335-62313354 | Msa1115140:intron | 35.0% | |
| ATGACATAAACAGGCTTCAT+TGG | + | chr7_3:62313576-62313595 | None:intergenic | 35.0% | |
| CTATATGGTTATGATCACCT+CGG | + | chr7_3:62314252-62314271 | None:intergenic | 35.0% | |
| GGAAAAAGAGGAAACCTATA+TGG | + | chr7_3:62314267-62314286 | None:intergenic | 35.0% | |
| CAAATTTCCTGAGTTGTAGT+AGG | - | chr7_3:62314446-62314465 | Msa1115140:CDS | 35.0% | |
| CAATCACAAACTGCTTCAAT+TGG | + | chr7_3:62314583-62314602 | None:intergenic | 35.0% | |
| TTGAAGCAGTTTGTGATTGA+CGG | - | chr7_3:62314584-62314603 | Msa1115140:intron | 35.0% | |
| TATCTCTAATCCGGATACAA+GGG | - | chr7_3:62314625-62314644 | Msa1115140:intron | 35.0% | |
| TGCTTCTCATCCAATAACTT+AGG | + | chr7_3:62314804-62314823 | None:intergenic | 35.0% | |
| !! | ACTTGAAGATGAAAGCATCT+CGG | - | chr7_3:62314862-62314881 | Msa1115140:intron | 35.0% |
| TAGAGTTACCTAGCAGAAAA+TGG | + | chr7_3:62314927-62314946 | None:intergenic | 35.0% | |
| TCATACATTCCACTAAACCA+AGG | + | chr7_3:62315057-62315076 | None:intergenic | 35.0% | |
| ! | TTTTCATGCAGAACAGGATA+TGG | + | chr7_3:62315097-62315116 | None:intergenic | 35.0% |
| AACATGAACAGTTCCACAAT+TGG | - | chr7_3:62315142-62315161 | Msa1115140:CDS | 35.0% | |
| ACATGAACAGTTCCACAATT+GGG | - | chr7_3:62315143-62315162 | Msa1115140:CDS | 35.0% | |
| TGCTATACTGTTTCCTTATC+AGG | - | chr7_3:62315192-62315211 | Msa1115140:intron | 35.0% | |
| TGCAACAAAATCACCTGATA+AGG | + | chr7_3:62315208-62315227 | None:intergenic | 35.0% | |
| TGTTGCACACATCAAATTCA+CGG | - | chr7_3:62315221-62315240 | Msa1115140:intron | 35.0% | |
| CTTGTTAATGCCAAATGGAT+CGG | - | chr7_3:62315245-62315264 | Msa1115140:intron | 35.0% | |
| !! | GGATCATCTATCGTTTTTGT+GGG | + | chr7_3:62315306-62315325 | None:intergenic | 35.0% |
| ACAAAGACAAAGAAGAAAGG+TGG | - | chr7_3:62315354-62315373 | Msa1115140:intron | 35.0% | |
| AAGAAGAAAAAAGGTAGGCT+TGG | - | chr7_3:62315381-62315400 | Msa1115140:intron | 35.0% | |
| ! | CGACATGATGGAACAAAAAT+AGG | + | chr7_3:62315450-62315469 | None:intergenic | 35.0% |
| !! | CATATGCTTTCTGAAATGCA+TGG | - | chr7_3:62315500-62315519 | Msa1115140:intron | 35.0% |
| !! | GATGCTTTGTGTTTTTGTTC+AGG | - | chr7_3:62315574-62315593 | Msa1115140:CDS | 35.0% |
| !!! | TTTTTTGGGATTGAGGATGA+GGG | + | chr7_3:62315686-62315705 | None:intergenic | 35.0% |
| CAATGTACCAAAACTGAAAG+GGG | + | chr7_3:62315738-62315757 | None:intergenic | 35.0% | |
| GGCAAAGATTCGAAGAAATG+AGG | + | chr7_3:62310986-62311005 | None:intergenic | 40.0% | |
| CATCAAGGATTGAACAAGTG+AGG | - | chr7_3:62311159-62311178 | Msa1115140:exon | 40.0% | |
| !! | CTCAGCTGCAGTTTTGTATT+TGG | + | chr7_3:62311247-62311266 | None:intergenic | 40.0% |
| GTGAAGAAGAAGATAGAGAG+AGG | - | chr7_3:62312070-62312089 | Msa1115140:intron | 40.0% | |
| !!! | CTAGTTTTGTGATTACCCTG+TGG | - | chr7_3:62312209-62312228 | Msa1115140:CDS | 40.0% |
| TTGTGATTACCCTGTGGTTT+CGG | - | chr7_3:62312215-62312234 | Msa1115140:CDS | 40.0% | |
| AAATGATAGCCGAAACCACA+GGG | + | chr7_3:62312227-62312246 | None:intergenic | 40.0% | |
| GAGAGAGACTGAAAAAACTG+GGG | + | chr7_3:62312976-62312995 | None:intergenic | 40.0% | |
| TGATGAATACGTCATAGGCT+AGG | - | chr7_3:62313066-62313085 | Msa1115140:intron | 40.0% | |
| TCAATAAAGACGCACCCAAA+GGG | + | chr7_3:62313172-62313191 | None:intergenic | 40.0% | |
| ! | TTTTGGCAACAGGGAAAAAG+AGG | + | chr7_3:62313364-62313383 | None:intergenic | 40.0% |
| !! | CCATTCAAGTTTTGGCAACA+GGG | + | chr7_3:62313373-62313392 | None:intergenic | 40.0% |
| TTGCCAAAACTTGAATGGCT+GGG | - | chr7_3:62313375-62313394 | Msa1115140:intron | 40.0% | |
| TAATATTGGCAACTTTGCCG+AGG | - | chr7_3:62313785-62313804 | Msa1115140:intron | 40.0% | |
| ! | TTTTGGCAACAGGGAAAAAG+AGG | + | chr7_3:62313364-62313383 | None:intergenic | 40.0% |
| !! | CCATTCAAGTTTTGGCAACA+GGG | + | chr7_3:62313373-62313392 | None:intergenic | 40.0% |
| !! | AGTTCCAGCCATTCAAGTTT+TGG | + | chr7_3:62313849-62313868 | None:intergenic | 40.0% |
| GATGAATACATCGTAGGCTA+TGG | - | chr7_3:62313985-62314004 | Msa1115140:intron | 40.0% | |
| CATAAATACCCACTTCCCTT+TGG | - | chr7_3:62314073-62314092 | Msa1115140:intron | 40.0% | |
| AAACACAACCAAAGGGAAGT+GGG | + | chr7_3:62314084-62314103 | None:intergenic | 40.0% | |
| AAAACACAACCAAAGGGAAG+TGG | + | chr7_3:62314085-62314104 | None:intergenic | 40.0% | |
| TAATATTGGCAACTTTGCCG+AGG | - | chr7_3:62313785-62313804 | Msa1115140:intron | 40.0% | |
| CGAGGTGATCATAACCATAT+AGG | - | chr7_3:62314250-62314269 | Msa1115140:intron | 40.0% | |
| ! | AGTTCCAGCCATTCAAGTTT+CGG | + | chr7_3:62313849-62313868 | None:intergenic | 40.0% |
| AATACACCCTACTACAACTC+AGG | + | chr7_3:62314456-62314475 | None:intergenic | 40.0% | |
| TCACAAACTGCTTCAATTGG+TGG | + | chr7_3:62314580-62314599 | None:intergenic | 40.0% | |
| GTTTGTGATTGACGGTAACA+AGG | - | chr7_3:62314592-62314611 | Msa1115140:intron | 40.0% | |
| GTATCTCTAATCCGGATACA+AGG | - | chr7_3:62314624-62314643 | Msa1115140:intron | 40.0% | |
| !! | ATAGTGACAAGTACTGGAGA+AGG | - | chr7_3:62314692-62314711 | Msa1115140:CDS | 40.0% |
| TCCAATAACTTAGGCTGCAA+GGG | + | chr7_3:62314795-62314814 | None:intergenic | 40.0% | |
| ATCCAATAACTTAGGCTGCA+AGG | + | chr7_3:62314796-62314815 | None:intergenic | 40.0% | |
| CTAGCAGAAAATGGCATGAT+TGG | + | chr7_3:62314918-62314937 | None:intergenic | 40.0% | |
| !!! | CAATCATGCCATTTTCTGCT+AGG | - | chr7_3:62314916-62314935 | Msa1115140:intron | 40.0% |
| ACACTCTCATTATAGGGCTT+TGG | - | chr7_3:62315015-62315034 | Msa1115140:intron | 40.0% | |
| !! | ACGGTCTTGTTAATGCCAAA+TGG | - | chr7_3:62315240-62315259 | Msa1115140:intron | 40.0% |
| !! | TTTTTGTGGGCTGCAATTCT+TGG | + | chr7_3:62315293-62315312 | None:intergenic | 40.0% |
| !! | GGGATCATCTATCGTTTTTG+TGG | + | chr7_3:62315307-62315326 | None:intergenic | 40.0% |
| GGCACAAAGACAAAGAAGAA+AGG | - | chr7_3:62315351-62315370 | Msa1115140:intron | 40.0% | |
| AAGACAAAGAAGAAAGGTGG+CGG | - | chr7_3:62315357-62315376 | Msa1115140:intron | 40.0% | |
| GCGGAAAGAAGAAAAAAGGT+AGG | - | chr7_3:62315376-62315395 | Msa1115140:intron | 40.0% | |
| TTCAGGTAAGAAAGAGGACA+AGG | - | chr7_3:62315591-62315610 | Msa1115140:CDS | 40.0% | |
| GTCAATTCATTCCTGAGATG+TGG | + | chr7_3:62315662-62315681 | None:intergenic | 40.0% | |
| !!! | CTTTTTTGGGATTGAGGATG+AGG | + | chr7_3:62315687-62315706 | None:intergenic | 40.0% |
| !!! | TGGGTTTTTCAGGAGCATCA+AGG | - | chr7_3:62311144-62311163 | Msa1115140:three_prime_UTR | 45.0% |
| CACCATGTCGGATGATGAAA+GGG | - | chr7_3:62311182-62311201 | Msa1115140:CDS | 45.0% | |
| GTTGTCGACATTTGCGAGAA+AGG | - | chr7_3:62311684-62311703 | Msa1115140:intron | 45.0% | |
| AACTAGTATCCTCTCACGTG+CGG | - | chr7_3:62311745-62311764 | Msa1115140:CDS | 45.0% | |
| TTCCAACACAGTCTCATCAC+TGG | + | chr7_3:62312155-62312174 | None:intergenic | 45.0% | |
| GATGAGACTGTGTTGGAAGA+AGG | - | chr7_3:62312157-62312176 | Msa1115140:CDS | 45.0% | |
| CAAATGATAGCCGAAACCAC+AGG | + | chr7_3:62312228-62312247 | None:intergenic | 45.0% | |
| CACACTCATGTTCTTCAGGA+AGG | - | chr7_3:62312328-62312347 | Msa1115140:intron | 45.0% | |
| TCATGTTCTTCAGGAAGGTC+CGG | - | chr7_3:62312333-62312352 | Msa1115140:intron | 45.0% | |
| AGGTTGCCTTAAGGCTTGTA+AGG | - | chr7_3:62312404-62312423 | Msa1115140:intron | 45.0% | |
| ATCCTGCTCCACATGTAGAT+AGG | - | chr7_3:62312509-62312528 | Msa1115140:intron | 45.0% | |
| AACCTATCTACATGTGGAGC+AGG | + | chr7_3:62312514-62312533 | None:intergenic | 45.0% | |
| AGCTACATATGTCAGCTGAG+AGG | + | chr7_3:62312777-62312796 | None:intergenic | 45.0% | |
| GTCAATAAAGACGCACCCAA+AGG | + | chr7_3:62313173-62313192 | None:intergenic | 45.0% | |
| TAATATTGGCGACTTTGCCG+AGG | - | chr7_3:62313317-62313336 | Msa1115140:intron | 45.0% | |
| CCCTGTTGCCAAAACTTGAA+TGG | - | chr7_3:62313370-62313389 | Msa1115140:intron | 45.0% | |
| !! | GCCATTCAAGTTTTGGCAAC+AGG | + | chr7_3:62313374-62313393 | None:intergenic | 45.0% |
| GTTGCCAAAACTTGAATGGC+TGG | - | chr7_3:62313374-62313393 | Msa1115140:intron | 45.0% | |
| !! | AGTCCCAGCCATTCAAGTTT+TGG | + | chr7_3:62313381-62313400 | None:intergenic | 45.0% |
| CCCTGTTGCCAAAACTTGAA+TGG | - | chr7_3:62313370-62313389 | Msa1115140:intron | 45.0% | |
| !! | GCCATTCAAGTTTTGGCAAC+AGG | + | chr7_3:62313374-62313393 | None:intergenic | 45.0% |
| GTTGCCAAAACTTGAATGGC+TGG | - | chr7_3:62313374-62313393 | Msa1115140:intron | 45.0% | |
| CTAGTGCAGCCAACATATCT+TGG | - | chr7_3:62313909-62313928 | Msa1115140:intron | 45.0% | |
| TTTCGGCAACAGGGAAAAAG+AGG | + | chr7_3:62314279-62314298 | None:intergenic | 45.0% | |
| ! | CCATTCAAGTTTCGGCAACA+GGG | + | chr7_3:62314288-62314307 | None:intergenic | 45.0% |
| GAAACTTGAATGGCTGGAAC+TGG | - | chr7_3:62314295-62314314 | Msa1115140:intron | 45.0% | |
| GCATCATCAACCCTTGTATC+CGG | + | chr7_3:62314638-62314657 | None:intergenic | 45.0% | |
| TCCCTTGCAGCCTAAGTTAT+TGG | - | chr7_3:62314791-62314810 | Msa1115140:intron | 45.0% | |
| ! | CTCTCATTATAGGGCTTTGG+AGG | - | chr7_3:62315018-62315037 | Msa1115140:intron | 45.0% |
| GTAGGAACACAACCCAATTG+TGG | + | chr7_3:62315158-62315177 | None:intergenic | 45.0% | |
| AGCAAGAAGTTTAGGCTCGT+AGG | + | chr7_3:62315176-62315195 | None:intergenic | 45.0% | |
| GATAGATGATCCCGAGATCA+AGG | - | chr7_3:62315314-62315333 | Msa1115140:intron | 45.0% | |
| CTTCTTTGTCTTTGTGCCCA+AGG | + | chr7_3:62315349-62315368 | None:intergenic | 45.0% | |
| !! | GGTGGCGGAAAGAAGAAAAA+AGG | - | chr7_3:62315372-62315391 | Msa1115140:intron | 45.0% |
| AACAAATGAGGCCACATCTC+AGG | - | chr7_3:62315648-62315667 | Msa1115140:exon | 45.0% | |
| ! | TCTGACACCCCTTTCAGTTT+TGG | - | chr7_3:62315728-62315747 | Msa1115140:intron | 45.0% |
| !!! | TTTTGTTAATATTATTTAAA+TGG | - | chr7_3:62311985-62312004 | Msa1115140:CDS | 5.0% |
| ! | GAACAAGTGAGGCACCATGT+CGG | - | chr7_3:62311170-62311189 | Msa1115140:CDS | 50.0% |
| GCACCATGTCGGATGATGAA+AGG | - | chr7_3:62311181-62311200 | Msa1115140:CDS | 50.0% | |
| CTCCCTTTCATCATCCGACA+TGG | + | chr7_3:62311187-62311206 | None:intergenic | 50.0% | |
| CATGTCGGATGATGAAAGGG+AGG | - | chr7_3:62311185-62311204 | Msa1115140:CDS | 50.0% | |
| GGATGATGAAAGGGAGGAGA+AGG | - | chr7_3:62311191-62311210 | Msa1115140:CDS | 50.0% | |
| TGAAAGGGAGGAGAAGGAGT+TGG | - | chr7_3:62311197-62311216 | Msa1115140:CDS | 50.0% | |
| GGAATGTAAACCGAAGGCCA+AGG | - | chr7_3:62311662-62311681 | Msa1115140:intron | 50.0% | |
| ! | ATGTCGACAACCTTGGCCTT+CGG | + | chr7_3:62311675-62311694 | None:intergenic | 50.0% |
| CTCGCAAATGTCGACAACCT+TGG | + | chr7_3:62311682-62311701 | None:intergenic | 50.0% | |
| TAATGTATGCCGCACGTGAG+AGG | + | chr7_3:62311757-62311776 | None:intergenic | 50.0% | |
| ! | CACTGGCTAGAGGAGAGAAA+TGG | + | chr7_3:62312138-62312157 | None:intergenic | 50.0% |
| ! | ACAGTCTCATCACTGGCTAG+AGG | + | chr7_3:62312148-62312167 | None:intergenic | 50.0% |
| AGCCAGTGATGAGACTGTGT+TGG | - | chr7_3:62312150-62312169 | Msa1115140:CDS | 50.0% | |
| ! | AGATGGGTTCATTGCTGCTG+TGG | - | chr7_3:62312303-62312322 | Msa1115140:CDS | 50.0% |
| GGCTCACACTCATGTTCTTC+AGG | - | chr7_3:62312324-62312343 | Msa1115140:intron | 50.0% | |
| !! | TCCTGGCCTTACAAGCCTTA+AGG | + | chr7_3:62312413-62312432 | None:intergenic | 50.0% |
| GCTTGTAAGGCCAGGAAAGA+AGG | - | chr7_3:62312417-62312436 | Msa1115140:intron | 50.0% | |
| AGACGCACCCAAAGGGATAT+GGG | + | chr7_3:62313165-62313184 | None:intergenic | 50.0% | |
| AAGACGCACCCAAAGGGATA+TGG | + | chr7_3:62313166-62313185 | None:intergenic | 50.0% | |
| CCCTGTTGCCGAAACTTGAA+TGG | - | chr7_3:62314285-62314304 | Msa1115140:intron | 50.0% | |
| ! | GCCATTCAAGTTTCGGCAAC+AGG | + | chr7_3:62314289-62314308 | None:intergenic | 50.0% |
| GTTGCCGAAACTTGAATGGC+TGG | - | chr7_3:62314289-62314308 | Msa1115140:intron | 50.0% | |
| !! | GGTTGATGATGCAGAGTTCG+AGG | - | chr7_3:62314646-62314665 | Msa1115140:CDS | 50.0% |
| !! | GACAAGTACTGGAGAAGGCA+AGG | - | chr7_3:62314697-62314716 | Msa1115140:CDS | 50.0% |
| ! | AGTACTGGAGAAGGCAAGGT+AGG | - | chr7_3:62314701-62314720 | Msa1115140:CDS | 50.0% |
| AAGAGCTCGCCTTGGTTTAG+TGG | - | chr7_3:62315045-62315064 | Msa1115140:intron | 50.0% | |
| ! | CCAGGCTTTTCATGCAGAAC+AGG | + | chr7_3:62315103-62315122 | None:intergenic | 50.0% |
| CCTGTTCTGCATGAAAAGCC+TGG | - | chr7_3:62315100-62315119 | Msa1115140:intron | 50.0% | |
| ATGATCCCGAGATCAAGGCA+TGG | - | chr7_3:62315319-62315338 | Msa1115140:intron | 50.0% | |
| !! | ATCAAGGCATGGCTAGCCTT+GGG | - | chr7_3:62315330-62315349 | Msa1115140:intron | 50.0% |
| ! | GCCAGTGGACTCAACAAATG+AGG | - | chr7_3:62315636-62315655 | Msa1115140:exon | 50.0% |
| ! | GCCTCATTTGTTGAGTCCAC+TGG | + | chr7_3:62315640-62315659 | None:intergenic | 50.0% |
| CTTCAGGAAGGTCCGGTTAC+TGG | - | chr7_3:62312340-62312359 | Msa1115140:intron | 55.0% | |
| AGGAAGGTCCGGTTACTGGA+CGG | - | chr7_3:62312344-62312363 | Msa1115140:intron | 55.0% | |
| ACGGGCAGCAGATGTCATTG+CGG | - | chr7_3:62312363-62312382 | Msa1115140:intron | 55.0% | |
| CTGCTGCTGAGGTTGCCTTA+AGG | - | chr7_3:62312395-62312414 | Msa1115140:intron | 55.0% | |
| GCCTTAAGGCTTGTAAGGCC+AGG | - | chr7_3:62312409-62312428 | Msa1115140:intron | 55.0% | |
| GAGGAGAAAAGAGCTCGCCT+TGG | - | chr7_3:62315037-62315056 | Msa1115140:intron | 55.0% | |
| GGAGTGGATGAGATGTGACG+CGG | + | chr7_3:62315272-62315291 | None:intergenic | 55.0% | |
| ! | GTGGGCTGCAATTCTTGGAG+TGG | + | chr7_3:62315288-62315307 | None:intergenic | 55.0% |
| GCTAGCCATGCCTTGATCTC+GGG | + | chr7_3:62315327-62315346 | None:intergenic | 55.0% | |
| ! | GGCTAGCCATGCCTTGATCT+CGG | + | chr7_3:62315328-62315347 | None:intergenic | 55.0% |
| !! | GATCAAGGCATGGCTAGCCT+TGG | - | chr7_3:62315329-62315348 | Msa1115140:intron | 55.0% |
| GGAAGGTCCGGTTACTGGAC+GGG | - | chr7_3:62312345-62312364 | Msa1115140:intron | 60.0% | |
| TCTGCTGCCCGTCCAGTAAC+CGG | + | chr7_3:62312355-62312374 | None:intergenic | 60.0% | |
| GGCTGCAAACACTGCTGCTG+AGG | - | chr7_3:62312384-62312403 | Msa1115140:intron | 60.0% | |
| GTGACGCGGTCCGATCCATT+TGG | + | chr7_3:62315258-62315277 | None:intergenic | 60.0% | |
| GACAGCAGAAGCTGAGCCAG+TGG | - | chr7_3:62315621-62315640 | Msa1115140:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_3 | gene | 62310913 | 62315927 | 62310913 | ID=Msa1115140;Name=Msa1115140 |
| chr7_3 | mRNA | 62310913 | 62315927 | 62310913 | ID=Msa1115140-mRNA-1;Parent=Msa1115140;Name=Msa1115140-mRNA-1;_AED=0.04;_eAED=0.04;_QI=199|1|1|1|0.88|0.8|10|252|394 |
| chr7_3 | exon | 62310913 | 62311244 | 62310913 | ID=Msa1115140-mRNA-1:exon:14432;Parent=Msa1115140-mRNA-1 |
| chr7_3 | exon | 62311447 | 62311626 | 62311447 | ID=Msa1115140-mRNA-1:exon:14431;Parent=Msa1115140-mRNA-1 |
| chr7_3 | exon | 62311719 | 62311810 | 62311719 | ID=Msa1115140-mRNA-1:exon:14430;Parent=Msa1115140-mRNA-1 |
| chr7_3 | exon | 62311903 | 62312039 | 62311903 | ID=Msa1115140-mRNA-1:exon:14429;Parent=Msa1115140-mRNA-1 |
| chr7_3 | exon | 62312122 | 62312337 | 62312122 | ID=Msa1115140-mRNA-1:exon:14428;Parent=Msa1115140-mRNA-1 |
| chr7_3 | exon | 62314402 | 62314555 | 62314402 | ID=Msa1115140-mRNA-1:exon:14427;Parent=Msa1115140-mRNA-1 |
| chr7_3 | exon | 62314646 | 62314795 | 62314646 | ID=Msa1115140-mRNA-1:exon:14426;Parent=Msa1115140-mRNA-1 |
| chr7_3 | exon | 62315116 | 62315200 | 62315116 | ID=Msa1115140-mRNA-1:exon:14425;Parent=Msa1115140-mRNA-1 |
| chr7_3 | exon | 62315564 | 62315707 | 62315564 | ID=Msa1115140-mRNA-1:exon:14424;Parent=Msa1115140-mRNA-1 |
| chr7_3 | exon | 62315782 | 62315927 | 62315782 | ID=Msa1115140-mRNA-1:exon:14423;Parent=Msa1115140-mRNA-1 |
| chr7_3 | five_prime_UTR | 62315782 | 62315927 | 62315782 | ID=Msa1115140-mRNA-1:five_prime_utr;Parent=Msa1115140-mRNA-1 |
| chr7_3 | five_prime_UTR | 62315655 | 62315707 | 62315655 | ID=Msa1115140-mRNA-1:five_prime_utr;Parent=Msa1115140-mRNA-1 |
| chr7_3 | CDS | 62315564 | 62315654 | 62315564 | ID=Msa1115140-mRNA-1:cds;Parent=Msa1115140-mRNA-1 |
| chr7_3 | CDS | 62315116 | 62315200 | 62315116 | ID=Msa1115140-mRNA-1:cds;Parent=Msa1115140-mRNA-1 |
| chr7_3 | CDS | 62314646 | 62314795 | 62314646 | ID=Msa1115140-mRNA-1:cds;Parent=Msa1115140-mRNA-1 |
| chr7_3 | CDS | 62314402 | 62314555 | 62314402 | ID=Msa1115140-mRNA-1:cds;Parent=Msa1115140-mRNA-1 |
| chr7_3 | CDS | 62312122 | 62312337 | 62312122 | ID=Msa1115140-mRNA-1:cds;Parent=Msa1115140-mRNA-1 |
| chr7_3 | CDS | 62311903 | 62312039 | 62311903 | ID=Msa1115140-mRNA-1:cds;Parent=Msa1115140-mRNA-1 |
| chr7_3 | CDS | 62311719 | 62311810 | 62311719 | ID=Msa1115140-mRNA-1:cds;Parent=Msa1115140-mRNA-1 |
| chr7_3 | CDS | 62311447 | 62311626 | 62311447 | ID=Msa1115140-mRNA-1:cds;Parent=Msa1115140-mRNA-1 |
| chr7_3 | CDS | 62311165 | 62311244 | 62311165 | ID=Msa1115140-mRNA-1:cds;Parent=Msa1115140-mRNA-1 |
| chr7_3 | three_prime_UTR | 62310913 | 62311164 | 62310913 | ID=Msa1115140-mRNA-1:three_prime_utr;Parent=Msa1115140-mRNA-1 |
| Gene Sequence |
| Protein sequence |
