AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1116080

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1116080 MtrunA17_Chr7g0258471 90.000 340 22 2 1 331 75 411 0.0 549
Msa1116080 MtrunA17_Chr1g0175021 50.840 238 69 11 115 315 8 234 1.37e-53 176
Msa1116080 MtrunA17_Chr3g0122411 39.689 257 130 7 14 257 117 361 3.77e-45 159
Msa1116080 MtrunA17_Chr7g0231911 50.000 134 61 1 14 147 101 228 6.06e-39 140
Msa1116080 MtrunA17_Chr4g0046991 75.325 77 19 0 65 141 70 146 8.17e-38 132
Msa1116080 MtrunA17_Chr8g0360361 70.732 82 24 0 65 146 62 143 1.71e-37 132
Msa1116080 MtrunA17_Chr4g0061651 53.030 132 53 3 13 142 73 197 9.53e-36 134
Msa1116080 MtrunA17_Chr2g0308321 51.974 152 67 4 12 163 119 264 1.43e-35 135
Msa1116080 MtrunA17_Chr3g0132091 46.617 133 69 1 17 147 20 152 6.50e-35 130
Msa1116080 MtrunA17_Chr5g0420051 61.957 92 35 0 66 157 179 270 2.08e-34 130
Msa1116080 MtrunA17_Chr2g0282521 66.667 87 25 1 57 143 57 139 3.13e-34 122
Msa1116080 MtrunA17_Chr8g0334671 52.381 126 47 1 16 141 148 260 3.64e-34 127
Msa1116080 MtrunA17_Chr1g0175031 61.386 101 39 0 14 114 20 120 5.49e-34 121
Msa1116080 MtrunA17_Chr7g0224821 63.953 86 31 0 63 148 72 157 5.07e-33 125
Msa1116080 MtrunA17_Chr8g0377421 45.968 124 65 1 18 141 84 205 2.05e-32 122
Msa1116080 MtrunA17_Chr8g0386271 59.091 88 36 0 63 150 94 181 4.50e-32 123
Msa1116080 MtrunA17_Chr8g0377401 48.485 132 49 2 9 140 122 234 4.75e-32 120
Msa1116080 MtrunA17_Chr2g0302791 59.574 94 38 0 53 146 124 217 3.47e-31 124
Msa1116080 MtrunA17_Chr1g0162871 58.333 96 40 0 52 147 88 183 9.75e-31 122
Msa1116080 MtrunA17_Chr1g0194121 47.727 132 69 0 10 141 89 220 3.00e-30 121
Msa1116080 MtrunA17_Chr7g0270541 68.919 74 23 0 68 141 145 218 1.16e-29 119
Msa1116080 MtrunA17_Chr2g0286661 51.351 74 36 0 68 141 103 176 1.07e-21 95.9
Msa1116080 MtrunA17_Chr8g0377431 40.164 122 66 3 4 121 86 204 8.50e-19 83.6
Msa1116080 MtrunA17_Chr2g0317041 61.538 52 20 0 66 117 97 148 7.67e-16 73.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1116080 AT2G42200.1 40.957 376 129 16 17 331 32 375 1.10e-61 201
Msa1116080 AT3G57920.1 39.669 363 136 16 17 331 27 354 1.13e-59 195
Msa1116080 AT1G69170.1 61.062 113 41 2 52 162 109 220 1.40e-36 136
Msa1116080 AT5G43270.3 53.488 129 58 1 16 144 119 245 1.55e-36 136
Msa1116080 AT5G43270.1 53.488 129 58 1 16 144 119 245 1.55e-36 136
Msa1116080 AT5G43270.2 53.488 129 58 1 16 144 119 245 1.55e-36 136
Msa1116080 AT1G27360.2 48.936 141 56 3 8 142 119 249 2.78e-36 135
Msa1116080 AT1G27360.1 48.936 141 56 3 8 142 119 249 2.78e-36 135
Msa1116080 AT1G27360.3 48.936 141 56 3 8 142 119 249 2.78e-36 135
Msa1116080 AT1G27360.4 48.936 141 56 3 8 142 119 249 2.78e-36 135
Msa1116080 AT1G27370.6 47.887 142 57 3 8 142 119 250 4.45e-36 133
Msa1116080 AT2G33810.1 72.973 74 20 0 68 141 54 127 1.09e-35 126
Msa1116080 AT1G27370.1 47.887 142 57 3 8 142 119 250 1.74e-35 133
Msa1116080 AT1G27370.5 47.887 142 57 3 8 142 119 250 1.74e-35 133
Msa1116080 AT1G27370.3 47.887 142 57 3 8 142 119 250 1.74e-35 133
Msa1116080 AT1G27370.2 47.887 142 57 3 8 142 119 250 1.74e-35 133
Msa1116080 AT1G27370.4 47.887 142 57 3 8 142 119 250 1.74e-35 133
Msa1116080 AT1G27370.7 47.887 142 57 3 8 142 119 250 1.74e-35 133
Msa1116080 AT3G15270.1 70.270 74 22 0 68 141 63 136 1.45e-34 125
Msa1116080 AT5G50570.1 47.333 150 73 2 4 147 31 180 1.56e-34 129
Msa1116080 AT5G50570.2 47.333 150 73 2 4 147 31 180 1.56e-34 129
Msa1116080 AT5G50670.1 47.333 150 73 2 4 147 31 180 1.56e-34 129
Msa1116080 AT5G50670.2 47.333 150 73 2 4 147 31 180 1.56e-34 129
Msa1116080 AT1G02065.1 63.333 90 33 0 52 141 172 261 2.07e-33 126
Msa1116080 AT1G53160.3 61.538 91 30 1 56 146 47 132 5.32e-33 120
Msa1116080 AT1G53160.2 61.538 91 30 1 56 146 47 132 9.70e-33 120
Msa1116080 AT1G53160.1 61.538 91 30 1 56 146 47 132 9.70e-33 120
Msa1116080 AT2G47070.1 62.366 93 28 1 52 144 97 182 1.82e-32 128
Msa1116080 AT3G60030.1 47.200 125 66 0 23 147 82 206 2.19e-31 125
Msa1116080 AT1G76580.2 62.500 88 33 0 66 153 112 199 3.59e-31 124
Msa1116080 AT1G76580.3 62.500 88 33 0 66 153 112 199 3.99e-31 124
Msa1116080 AT1G76580.1 62.500 88 33 0 66 153 112 199 5.02e-31 124
Msa1116080 AT1G20980.1 63.333 90 32 1 52 141 105 193 1.86e-29 119
Msa1116080 AT5G18830.2 46.154 91 45 1 53 143 127 213 3.18e-21 95.1
Msa1116080 AT5G18830.3 46.154 91 45 1 53 143 127 213 3.19e-21 95.1
Msa1116080 AT5G18830.1 46.154 91 45 1 53 143 127 213 3.32e-21 95.1
Msa1116080 AT2G47070.2 75.472 53 13 0 92 144 1 53 1.74e-20 92.8
Msa1116080 AT1G02065.2 56.250 64 28 0 52 115 172 235 4.20e-18 82.8

Find 122 sgRNAs with CRISPR-Local

Find 279 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAATGCATTTGTTTGCTTTC+AGG 0.081646 7_3:-63608385 Msa1116080:three_prime_UTR
TCACCTGCTGTTACTGTTTC+TGG 0.105065 7_3:-63611545 Msa1116080:CDS
TCAGAAGAGTCCTCTCTTAA+TGG 0.174051 7_3:-63611806 Msa1116080:CDS
TCTCTTAATGGCTTGAAATT+TGG 0.181393 7_3:-63611794 Msa1116080:CDS
GCTGGTTCTCCTTCTTCTTC+TGG 0.208998 7_3:-63611701 Msa1116080:CDS
AGTTTCTCAGACCATGTTTC+GGG 0.285688 7_3:+63608851 None:intergenic
GGAGTGGTGGTTGTTGTTGT+TGG 0.318431 7_3:+63611958 None:intergenic
GAAGTTGTTTGATGTGGATT+TGG 0.343895 7_3:-63608201 Msa1116080:three_prime_UTR
ATTGTTGTGGTTTGATTTCC+AGG 0.354503 7_3:+63608817 None:intergenic
CCTTACACACCAATGGATTC+AGG 0.354583 7_3:-63611842 Msa1116080:exon
TTTGGTTTGTTTAAACTGTT+AGG 0.360942 7_3:-63608282 Msa1116080:three_prime_UTR
CCTGAATCCATTGGTGTGTA+AGG 0.369337 7_3:+63611842 None:intergenic
CATTGGTGTGTAAGGTTTGA+TGG 0.375253 7_3:+63611850 None:intergenic
AATAACATGCTGAATTTCAA+TGG 0.376067 7_3:-63608595 Msa1116080:CDS
GGGACAACCTCGTAATTGTT+TGG 0.378584 7_3:+63608517 None:intergenic
GCAGGGAAGGAGGCATTATA+TGG 0.380825 7_3:-63608452 Msa1116080:CDS
CAACTTTCTGAGTTTGATCA+AGG 0.380902 7_3:-63609163 Msa1116080:CDS
GAGTTTCTCAGACCATGTTT+CGG 0.384822 7_3:+63608850 None:intergenic
TCTTCTTCTGGTTCAAAGAA+AGG 0.384894 7_3:-63611689 Msa1116080:CDS
TACGAGGTTGTCCCTGATCT+TGG 0.397510 7_3:-63608508 Msa1116080:CDS
AACAATCGGTTGGCCTTGGC+CGG 0.403146 7_3:-63608800 Msa1116080:CDS
GGTTGCTAGATTGTGCTCAT+TGG 0.427126 7_3:+63611874 None:intergenic
GGACAAGCTTCCCTGGTGCC+AGG 0.429885 7_3:-63608726 Msa1116080:CDS
GACTCCAGTGTAAGTTTCCT+CGG 0.430936 7_3:+63608696 None:intergenic
AAGAAGAGAGTGAATAATAG+TGG 0.442195 7_3:+63612002 None:intergenic
ATATGGATGTAGAACATTCC+AGG 0.443177 7_3:-63608435 Msa1116080:CDS
GTGGGTGGGACAAGCTTCCC+TGG 0.445665 7_3:-63608733 Msa1116080:CDS
CTCTTCTGTCAAATCAAACA+TGG 0.449340 7_3:-63608651 Msa1116080:CDS
CTGGTCATAACGAGCGTCGC+AGG 0.452231 7_3:-63609114 Msa1116080:CDS
GATAATAAACTAGATTTGAG+AGG 0.457442 7_3:+63608061 None:intergenic
TGACAGTGAGAGAATAGTAT+AGG 0.462977 7_3:+63611921 None:intergenic
ATGTTATTCAATCCAGGACT+TGG 0.463473 7_3:+63608610 None:intergenic
AGTTTCCTCGGGAGGATGCC+TGG 0.464469 7_3:+63608708 None:intergenic
GAGAGTTGACTACCAAGATC+AGG 0.468364 7_3:+63608496 None:intergenic
CCACAACAATCGGTTGGCCT+TGG 0.472552 7_3:-63608804 Msa1116080:CDS
GTGGAAGACAAAAGAGGAAG+AGG 0.472761 7_3:+63612034 None:intergenic
CAATCGGTTGGCCTTGGCCG+GGG 0.476765 7_3:-63608798 Msa1116080:CDS
TTGGCCTTGGCCGGGGAACA+CGG 0.477293 7_3:-63608791 Msa1116080:CDS
TTCTTTGAACCAGAAGAAGA+AGG 0.479165 7_3:+63611692 None:intergenic
ACTACTGCAACATTCATTTG+CGG 0.479277 7_3:+63608147 None:intergenic
ACAATCGGTTGGCCTTGGCC+GGG 0.480117 7_3:-63608799 Msa1116080:CDS
TGACCATTGAGAAGATTCAT+AGG 0.480203 7_3:+63608411 None:intergenic
CTGTTTCTGGTCTTCAACAG+AGG 0.487310 7_3:-63611532 Msa1116080:CDS
TTCAGCATGTTATTCAATCC+AGG 0.487732 7_3:+63608604 None:intergenic
TATCTTCAAAATAGATTCGT+TGG 0.488281 7_3:+63611771 None:intergenic
TTCTTACAAGGTTCGGTGGG+TGG 0.489798 7_3:-63608748 Msa1116080:CDS
CGTGAGGATAAGAGAGAGCT+TGG 0.490068 7_3:+63609082 None:intergenic
TTGAGAAGATTCATAGGCCC+TGG 0.491228 7_3:+63608417 None:intergenic
GGAAATCAAACCACAACAAT+CGG 0.495615 7_3:-63608814 Msa1116080:CDS
GTGGTTTGATTTCCAGGTGA+TGG 0.496848 7_3:+63608823 None:intergenic
GACTCCGTGTTCCCCGGCCA+AGG 0.497185 7_3:+63608787 None:intergenic
ATAACATGCTGAATTTCAAT+GGG 0.498202 7_3:-63608594 Msa1116080:CDS
CCACCTAGGTGTCAAGTTGA+AGG 0.498451 7_3:-63611638 Msa1116080:CDS
AGGATAAGAGAGAGCTTGGT+GGG 0.499295 7_3:+63609086 None:intergenic
TTTCACAAATATTTGAACTC+AGG 0.499742 7_3:-63608348 Msa1116080:three_prime_UTR
TTTAAACTGTTAGGCAAGGT+GGG 0.501008 7_3:-63608273 Msa1116080:three_prime_UTR
TGAGAGAATAGTATAGGTGA+GGG 0.503559 7_3:+63611927 None:intergenic
CGAAACACAGAACCAAGTCC+TGG 0.504058 7_3:-63608622 Msa1116080:CDS
CCACCGAACCTTGTAAGAAA+AGG 0.504768 7_3:+63608752 None:intergenic
CAGAGGTGGCAGCTTCTCAA+TGG 0.508189 7_3:-63608887 Msa1116080:CDS
TGAGCTTGATCTGTCACAGC+AGG 0.508601 7_3:-63608470 Msa1116080:CDS
GAAGACAAAAGAGGAAGAGG+TGG 0.515918 7_3:+63612037 None:intergenic
ACAAAAGAGGAAGAGGTGGA+AGG 0.517306 7_3:+63612041 None:intergenic
GATCTTGGTAGTCAACTCTC+TGG 0.522173 7_3:-63608493 Msa1116080:CDS
TTTCATGAAGTTGTTTGATG+TGG 0.530307 7_3:-63608207 Msa1116080:three_prime_UTR
TCTTACAAGGTTCGGTGGGT+GGG 0.530469 7_3:-63608747 Msa1116080:CDS
AGAGAATAGTATAGGTGAGG+GGG 0.537430 7_3:+63611929 None:intergenic
GTTTAAACTGTTAGGCAAGG+TGG 0.538745 7_3:-63608274 Msa1116080:three_prime_UTR
TCTGGTTCAAAGAAAGGAAG+AGG 0.539167 7_3:-63611683 Msa1116080:CDS
AGAACCAGCAGCAATGATAG+TGG 0.539699 7_3:+63611715 None:intergenic
GCTAGCCTTGCTTCACTCTG+TGG 0.543180 7_3:-63608250 Msa1116080:three_prime_UTR
AGTTGCCGCAGACGACTAGC+TGG 0.548200 7_3:-63609133 Msa1116080:CDS
AGTGAAGTGGAAGACAAAAG+AGG 0.550668 7_3:+63612028 None:intergenic
GTGAGAGAATAGTATAGGTG+AGG 0.554444 7_3:+63611926 None:intergenic
ACTACCACTATCATTGCTGC+TGG 0.554840 7_3:-63611719 Msa1116080:CDS
ACTCCAGTGTAAGTTTCCTC+GGG 0.556391 7_3:+63608697 None:intergenic
CGGGAGGATGCCTGGCACCA+GGG 0.558370 7_3:+63608716 None:intergenic
TTTGTTTAAACTGTTAGGCA+AGG 0.559342 7_3:-63608277 Msa1116080:three_prime_UTR
TCTTCTGTCAAATCAAACAT+GGG 0.559601 7_3:-63608650 Msa1116080:CDS
CAACATGCTACATCTTCTCA+TGG 0.560658 7_3:-63608559 Msa1116080:CDS
CCAAGGCCAACCGATTGTTG+TGG 0.562819 7_3:+63608804 None:intergenic
GGGCCTATGAATCTTCTCAA+TGG 0.567201 7_3:-63608414 Msa1116080:CDS
AGAAACTCACTTCCATCACC+TGG 0.568923 7_3:-63608835 Msa1116080:CDS
CATCCTTCAACTTGACACCT+AGG 0.569400 7_3:+63611635 None:intergenic
TATGGATGTAGAACATTCCA+GGG 0.576787 7_3:-63608434 Msa1116080:CDS
ATCTGTCACAGCAGGGAAGG+AGG 0.579575 7_3:-63608462 Msa1116080:CDS
TTTGCTTCAAACCCGAAACA+TGG 0.581269 7_3:-63608862 Msa1116080:CDS
CATCAAACCTTACACACCAA+TGG 0.581957 7_3:-63611849 Msa1116080:exon
ATCAAACCACAACAATCGGT+TGG 0.583449 7_3:-63608810 Msa1116080:CDS
GATAAGAGAGAGCTTGGTGG+GGG 0.583606 7_3:+63609088 None:intergenic
TTAAACTGTTAGGCAAGGTG+GGG 0.589746 7_3:-63608272 Msa1116080:three_prime_UTR
ATAATAAACTAGATTTGAGA+GGG 0.593686 7_3:+63608062 None:intergenic
AGATGTAGCATGTTGTGTCA+TGG 0.599172 7_3:+63608567 None:intergenic
TTGATCTGTCACAGCAGGGA+AGG 0.603085 7_3:-63608465 Msa1116080:CDS
TGGTGCCAGGCATCCTCCCG+AGG 0.606308 7_3:-63608713 Msa1116080:CDS
GAGAGAATAGTATAGGTGAG+GGG 0.607703 7_3:+63611928 None:intergenic
ATAATAGTGGAAAAGTGAAG+TGG 0.610766 7_3:+63612015 None:intergenic
GGTTCAAAGAAAGGAAGAGG+TGG 0.614988 7_3:-63611680 Msa1116080:CDS
ATTGTTTGGAATTTGATGCA+TGG 0.618224 7_3:+63608531 None:intergenic
GAGAATAGTATAGGTGAGGG+GGG 0.622222 7_3:+63611930 None:intergenic
GAGGATAAGAGAGAGCTTGG+TGG 0.625727 7_3:+63609085 None:intergenic
AGACCAGAAACAGTAACAGC+AGG 0.628633 7_3:+63611542 None:intergenic
AAATTTCAAGCCATTAAGAG+AGG 0.629126 7_3:+63611796 None:intergenic
AGAGTTGACTACCAAGATCA+GGG 0.633166 7_3:+63608497 None:intergenic
CCTCCCGAGGAAACTTACAC+TGG 0.634056 7_3:-63608700 Msa1116080:CDS
CCAGTGTAAGTTTCCTCGGG+AGG 0.637090 7_3:+63608700 None:intergenic
GGATAAGAGAGAGCTTGGTG+GGG 0.640218 7_3:+63609087 None:intergenic
TGTAAGAAAAGGTTGTCAGA+TGG 0.641168 7_3:+63608763 None:intergenic
GAGCTTGATCTGTCACAGCA+GGG 0.647904 7_3:-63608469 Msa1116080:CDS
CTTCTGTCAAATCAAACATG+GGG 0.651750 7_3:-63608649 Msa1116080:CDS
GAATGTTGCAGTAGTATATG+CGG 0.654393 7_3:-63608139 Msa1116080:three_prime_UTR
AGAAAGTCTGGCAAAGCGTG+AGG 0.655770 7_3:+63609066 None:intergenic
GTTCAAAGAAAGGAAGAGGT+GGG 0.656815 7_3:-63611679 Msa1116080:CDS
TGGTGTGTAAGGTTTGATGG+TGG 0.657523 7_3:+63611853 None:intergenic
TCAACAGGTAACAGCGACAG+AGG 0.670073 7_3:-63608904 Msa1116080:intron
GAGTTGCCTCCTGAATCCAT+TGG 0.670435 7_3:+63611833 None:intergenic
CCTTCAACTTGACACCTAGG+TGG 0.670664 7_3:+63611638 None:intergenic
TATGACCAGCTAGTCGTCTG+CGG 0.672801 7_3:+63609128 None:intergenic
ACAGGTAACAGCGACAGAGG+TGG 0.683485 7_3:-63608901 Msa1116080:intron
TACACACCAATGGATTCAGG+AGG 0.706201 7_3:-63611839 Msa1116080:exon
TCAAATTCCAAACAATTACG+AGG 0.709188 7_3:-63608524 Msa1116080:CDS
TTCAACATTCTCAACCACCT+AGG 0.711691 7_3:-63611652 Msa1116080:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTATTTATTTATTAT+TGG - chr7_3:63610882-63610901 Msa1116080:intron 0.0%
!!! ATTTGATTCCTTTTTTTATT+TGG - chr7_3:63609065-63609084 Msa1116080:CDS 15.0%
!! ATATATATACTAATACTTGT+AGG - chr7_3:63609206-63609225 Msa1116080:intron 15.0%
!!! TTTTTGTCTTTTTAATCTTA+TGG - chr7_3:63610156-63610175 Msa1116080:intron 15.0%
!! TTCAGATGATATAATATTTA+TGG - chr7_3:63610389-63610408 Msa1116080:intron 15.0%
!! TACATGAGAAATAAAAAAGA+TGG + chr7_3:63608682-63608701 None:intergenic 20.0%
!!! TAAGGTCTTTTTCATTTTTT+TGG - chr7_3:63608727-63608746 Msa1116080:CDS 20.0%
!!! TAAAAAAAATGTTCTGGTTT+AGG - chr7_3:63609316-63609335 Msa1116080:intron 20.0%
!! TGCATTATTATTACAATGAA+AGG - chr7_3:63609660-63609679 Msa1116080:intron 20.0%
!!! TTTGATAGTAATAACTAAGA+TGG - chr7_3:63609756-63609775 Msa1116080:intron 20.0%
!! AATAGTACTAATTCTCAATA+AGG + chr7_3:63609870-63609889 None:intergenic 20.0%
!! TTATTGAGAATTAGTACTAT+TGG - chr7_3:63609869-63609888 Msa1116080:intron 20.0%
!!! TTTTCCAATTATTCACATTA+TGG + chr7_3:63610261-63610280 None:intergenic 20.0%
!! TGAATAAACAAGAAAACTAA+AGG - chr7_3:63610617-63610636 Msa1116080:intron 20.0%
!! TTTATTATTGGAAACAAGTA+AGG - chr7_3:63610894-63610913 Msa1116080:intron 20.0%
!! TTATTATTGGAAACAAGTAA+GGG - chr7_3:63610895-63610914 Msa1116080:intron 20.0%
! TATCTTCAAAATAGATTCGT+TGG + chr7_3:63608365-63608384 None:intergenic 25.0%
! AAAAGATGGAGAAGAAAAAA+GGG + chr7_3:63608668-63608687 None:intergenic 25.0%
! AAAAAGATGGAGAAGAAAAA+AGG + chr7_3:63608669-63608688 None:intergenic 25.0%
! TATTTCTCATGTAATGTGTA+TGG - chr7_3:63608689-63608708 Msa1116080:CDS 25.0%
!! TATTTTGTTCTGTTATTCTC+CGG - chr7_3:63608772-63608791 Msa1116080:CDS 25.0%
! ACCTATAATACAATAAAACC+CGG + chr7_3:63608794-63608813 None:intergenic 25.0%
! TATTATAGGTGTAGTATTGT+AGG - chr7_3:63608804-63608823 Msa1116080:CDS 25.0%
!! TGCTTTTGATATGTTTGATT+TGG - chr7_3:63608958-63608977 Msa1116080:intron 25.0%
!!! GCTTTTGATATGTTTGATTT+GGG - chr7_3:63608959-63608978 Msa1116080:intron 25.0%
! TCGCAATTCCAAATAAAAAA+AGG + chr7_3:63609076-63609095 None:intergenic 25.0%
!! CAGTGACAGATTATATATTT+TGG + chr7_3:63609181-63609200 None:intergenic 25.0%
!!! ACATTTTTTTTACAACTCCA+TGG + chr7_3:63609308-63609327 None:intergenic 25.0%
! GAGTTGTAAAAAAAATGTTC+TGG - chr7_3:63609310-63609329 Msa1116080:intron 25.0%
! GCTATAGAAATGAAATTGAA+TGG - chr7_3:63609478-63609497 Msa1116080:intron 25.0%
! GTATGGTAAAACTAAGTATT+TGG - chr7_3:63609545-63609564 Msa1116080:intron 25.0%
! TTATTACAATGAAAGGTTTC+TGG - chr7_3:63609667-63609686 Msa1116080:intron 25.0%
! AAAAAGACAAAAACAACACT+TGG + chr7_3:63610149-63610168 None:intergenic 25.0%
! TGTTCCATAATGTGAATAAT+TGG - chr7_3:63610254-63610273 Msa1116080:intron 25.0%
! TAAAGTAGTACATCTGATAT+CGG - chr7_3:63610327-63610346 Msa1116080:intron 25.0%
!! TATTTGACACTTTTATCAAC+AGG - chr7_3:63611214-63611233 Msa1116080:intron 25.0%
! AATAACATGCTGAATTTCAA+TGG - chr7_3:63611538-63611557 Msa1116080:CDS 25.0%
! ATAACATGCTGAATTTCAAT+GGG - chr7_3:63611539-63611558 Msa1116080:CDS 25.0%
! TTTCACAAATATTTGAACTC+AGG - chr7_3:63611785-63611804 Msa1116080:CDS 25.0%
!!! TTTGGTTTGTTTAAACTGTT+AGG - chr7_3:63611851-63611870 Msa1116080:exon 25.0%
! ATAATAGTGGAAAAGTGAAG+TGG + chr7_3:63608121-63608140 None:intergenic 30.0%
AAGAAGAGAGTGAATAATAG+TGG + chr7_3:63608134-63608153 None:intergenic 30.0%
AAATTTCAAGCCATTAAGAG+AGG + chr7_3:63608340-63608359 None:intergenic 30.0%
TCTCTTAATGGCTTGAAATT+TGG - chr7_3:63608339-63608358 Msa1116080:three_prime_UTR 30.0%
AAAAAGGGGTAGGTTAAAAA+GGG + chr7_3:63608653-63608672 None:intergenic 30.0%
AAAAAAGGGGTAGGTTAAAA+AGG + chr7_3:63608654-63608673 None:intergenic 30.0%
AAAGATGGAGAAGAAAAAAG+GGG + chr7_3:63608667-63608686 None:intergenic 30.0%
TGGTAAGGACATTAAGATTA+AGG - chr7_3:63608709-63608728 Msa1116080:CDS 30.0%
! ATTTTGTTCTGTTATTCTCC+GGG - chr7_3:63608773-63608792 Msa1116080:CDS 30.0%
!!! TCCGGGTTTTATTGTATTAT+AGG - chr7_3:63608790-63608809 Msa1116080:CDS 30.0%
! AGGAATCAAATTCTCTGAAA+AGG + chr7_3:63609056-63609075 None:intergenic 30.0%
! TAATACTTGTAGGTGTTTTG+AGG - chr7_3:63609216-63609235 Msa1116080:intron 30.0%
!! ATGTTCTGGTTTAGGATAAT+AGG - chr7_3:63609324-63609343 Msa1116080:intron 30.0%
AATGAAATTGAATGGAAGCA+TGG - chr7_3:63609486-63609505 Msa1116080:intron 30.0%
AGGTTCATTTAGATCAATGA+AGG + chr7_3:63609626-63609645 None:intergenic 30.0%
TCATTGATCTAAATGAACCT+AGG - chr7_3:63609626-63609645 Msa1116080:intron 30.0%
CATTGATCTAAATGAACCTA+GGG - chr7_3:63609627-63609646 Msa1116080:intron 30.0%
AAAATGAAAGCAAAAAGACC+AGG + chr7_3:63609919-63609938 None:intergenic 30.0%
!! ACTAACAAAGCGTATTTTAG+AGG - chr7_3:63609990-63610009 Msa1116080:intron 30.0%
AAGTTTCTGACCATAAGATT+TGG - chr7_3:63610034-63610053 Msa1116080:intron 30.0%
TTCTGTGTTGTGTATATATG+TGG - chr7_3:63610073-63610092 Msa1116080:intron 30.0%
TTTAATCTTATGGCTCATCT+AGG - chr7_3:63610166-63610185 Msa1116080:intron 30.0%
!! TAAAAGGGTGCTTAGATATA+AGG - chr7_3:63610476-63610495 Msa1116080:intron 30.0%
! GACCAACATTATTAGGTTTT+AGG - chr7_3:63610548-63610567 Msa1116080:intron 30.0%
TGCCTAAAACCTAATAATGT+TGG + chr7_3:63610553-63610572 None:intergenic 30.0%
AAACTAAAGGAAAGATCAGT+AGG - chr7_3:63610630-63610649 Msa1116080:intron 30.0%
!!! TATTTTGAGACTGCATTGAT+TGG - chr7_3:63610658-63610677 Msa1116080:intron 30.0%
!!! ATTTTGAGACTGCATTGATT+GGG - chr7_3:63610659-63610678 Msa1116080:intron 30.0%
TTTCCAAGAATTCATGAGTT+TGG + chr7_3:63610697-63610716 None:intergenic 30.0%
AAACTCATGAATTCTTGGAA+AGG - chr7_3:63610696-63610715 Msa1116080:intron 30.0%
GCATAAATTGGTATGAAGTA+TGG - chr7_3:63610856-63610875 Msa1116080:intron 30.0%
!! TCAGAAAGTTGATGAAATCT+GGG + chr7_3:63610961-63610980 None:intergenic 30.0%
AAAAACAGATGAAGAAAGTC+TGG + chr7_3:63611082-63611101 None:intergenic 30.0%
! AGACTTTCTTCATCTGTTTT+TGG - chr7_3:63611081-63611100 Msa1116080:intron 30.0%
GAACAAAAATTGAAAGCAGA+GGG + chr7_3:63611140-63611159 None:intergenic 30.0%
TGAACAAAAATTGAAAGCAG+AGG + chr7_3:63611141-63611160 None:intergenic 30.0%
TCTTCTGTCAAATCAAACAT+GGG - chr7_3:63611483-63611502 Msa1116080:intron 30.0%
! ATTGTTTGGAATTTGATGCA+TGG + chr7_3:63611605-63611624 None:intergenic 30.0%
TCAAATTCCAAACAATTACG+AGG - chr7_3:63611609-63611628 Msa1116080:CDS 30.0%
TAATGCATTTGTTTGCTTTC+AGG - chr7_3:63611748-63611767 Msa1116080:CDS 30.0%
TTTGTTTAAACTGTTAGGCA+AGG - chr7_3:63611856-63611875 Msa1116080:five_prime_UTR 30.0%
TTTCATGAAGTTGTTTGATG+TGG - chr7_3:63611926-63611945 Msa1116080:five_prime_UTR 30.0%
TGAGAGAATAGTATAGGTGA+GGG + chr7_3:63608209-63608228 None:intergenic 35.0%
TGACAGTGAGAGAATAGTAT+AGG + chr7_3:63608215-63608234 None:intergenic 35.0%
TTCTTTGAACCAGAAGAAGA+AGG + chr7_3:63608444-63608463 None:intergenic 35.0%
!! TCTTCTTCTGGTTCAAAGAA+AGG - chr7_3:63608444-63608463 Msa1116080:CDS 35.0%
CTCATGTAATGTGTATGGTA+AGG - chr7_3:63608694-63608713 Msa1116080:CDS 35.0%
TCATGCTATGTTATCCTGTT+TGG - chr7_3:63608840-63608859 Msa1116080:CDS 35.0%
TATAATTGAACCGACCAAAC+AGG + chr7_3:63608857-63608876 None:intergenic 35.0%
GCAAAAAAACAAAGTACAGC+CGG + chr7_3:63608996-63609015 None:intergenic 35.0%
TCTTGTACTTCACTTGTGTT+AGG - chr7_3:63609102-63609121 Msa1116080:CDS 35.0%
TAGACTCCTACATACCTAAA+CGG + chr7_3:63609249-63609268 None:intergenic 35.0%
GGTATGTAGGAGTCTAAAAA+AGG - chr7_3:63609253-63609272 Msa1116080:intron 35.0%
TTGATTTATCTGTTCTGCCA+TGG - chr7_3:63609288-63609307 Msa1116080:intron 35.0%
! TCTGGTTTAGGATAATAGGA+TGG - chr7_3:63609328-63609347 Msa1116080:intron 35.0%
! GTGTGAGATTTTGTTCCTTT+TGG - chr7_3:63609387-63609406 Msa1116080:intron 35.0%
ACATAGTACCAGGAATAAAG+AGG + chr7_3:63609414-63609433 None:intergenic 35.0%
TCTTTATTCCTGGTACTATG+TGG - chr7_3:63609413-63609432 Msa1116080:intron 35.0%
AGGAAGTTCTTGAGCTAATA+AGG - chr7_3:63609445-63609464 Msa1116080:intron 35.0%
CCAACTGTAGAATAATTGCA+CGG - chr7_3:63609520-63609539 Msa1116080:intron 35.0%
AGAATAATTGCACGGATGTA+TGG - chr7_3:63609528-63609547 Msa1116080:intron 35.0%
!! ATTAGTACTATTGGTGTTGC+TGG - chr7_3:63609878-63609897 Msa1116080:intron 35.0%
!! AACAAAGCGTATTTTAGAGG+TGG - chr7_3:63609993-63610012 Msa1116080:intron 35.0%
CAGAAACTTTCCAATGATGA+TGG + chr7_3:63610023-63610042 None:intergenic 35.0%
ACCATAAGATTTGGAGAACA+TGG - chr7_3:63610043-63610062 Msa1116080:intron 35.0%
ACCATGTTCTCCAAATCTTA+TGG + chr7_3:63610047-63610066 None:intergenic 35.0%
CTTAACTTACTACAGATCAG+AGG + chr7_3:63610224-63610243 None:intergenic 35.0%
CTCTGATCTGTAGTAAGTTA+AGG - chr7_3:63610222-63610241 Msa1116080:intron 35.0%
ACCCTTTGCCTCTAATAAAA+GGG - chr7_3:63610461-63610480 Msa1116080:intron 35.0%
! ACCCTTTTATTAGAGGCAAA+GGG + chr7_3:63610465-63610484 None:intergenic 35.0%
! TCTAAGCACCCTTTTATTAG+AGG + chr7_3:63610472-63610491 None:intergenic 35.0%
AGACCAAACTCATGAATTCT+TGG - chr7_3:63610691-63610710 Msa1116080:intron 35.0%
AACTCTCGAATTTCTTCGAT+AGG - chr7_3:63610728-63610747 Msa1116080:intron 35.0%
CATCTCTCTTCAGCATAAAT+TGG - chr7_3:63610844-63610863 Msa1116080:intron 35.0%
!! AAGTTGATGAAATCTGGGAA+AGG + chr7_3:63610956-63610975 None:intergenic 35.0%
!! CTCAGAAAGTTGATGAAATC+TGG + chr7_3:63610962-63610981 None:intergenic 35.0%
CAACTTTCTGAGTTTGATCA+AGG - chr7_3:63610970-63610989 Msa1116080:intron 35.0%
! ATTGTTGTGGTTTGATTTCC+AGG + chr7_3:63611319-63611338 None:intergenic 35.0%
GGAAATCAAACCACAACAAT+CGG - chr7_3:63611319-63611338 Msa1116080:intron 35.0%
TGTAAGAAAAGGTTGTCAGA+TGG + chr7_3:63611373-63611392 None:intergenic 35.0%
! TCTGACAACCTTTTCTTACA+AGG - chr7_3:63611373-63611392 Msa1116080:intron 35.0%
! CAACCTTTTCTTACAAGGTT+CGG - chr7_3:63611378-63611397 Msa1116080:intron 35.0%
CTCTTCTGTCAAATCAAACA+TGG - chr7_3:63611482-63611501 Msa1116080:intron 35.0%
CTTCTGTCAAATCAAACATG+GGG - chr7_3:63611484-63611503 Msa1116080:intron 35.0%
ATGTTATTCAATCCAGGACT+TGG + chr7_3:63611526-63611545 None:intergenic 35.0%
TTCAGCATGTTATTCAATCC+AGG + chr7_3:63611532-63611551 None:intergenic 35.0%
ATATGGATGTAGAACATTCC+AGG - chr7_3:63611698-63611717 Msa1116080:CDS 35.0%
TATGGATGTAGAACATTCCA+GGG - chr7_3:63611699-63611718 Msa1116080:CDS 35.0%
TGACCATTGAGAAGATTCAT+AGG + chr7_3:63611725-63611744 None:intergenic 35.0%
! CTTGATGCTTTTGCTTGTTT+TGG - chr7_3:63611833-63611852 Msa1116080:CDS 35.0%
TTTAAACTGTTAGGCAAGGT+GGG - chr7_3:63611860-63611879 Msa1116080:five_prime_UTR 35.0%
! CACTCTGTGGTTTTTAATCA+TGG - chr7_3:63611896-63611915 Msa1116080:five_prime_UTR 35.0%
GAAGTTGTTTGATGTGGATT+TGG - chr7_3:63611932-63611951 Msa1116080:five_prime_UTR 35.0%
ACTACTGCAACATTCATTTG+CGG + chr7_3:63611989-63612008 None:intergenic 35.0%
GAATGTTGCAGTAGTATATG+CGG - chr7_3:63611994-63612013 Msa1116080:five_prime_UTR 35.0%
AGTGAAGTGGAAGACAAAAG+AGG + chr7_3:63608108-63608127 None:intergenic 40.0%
AGAGAATAGTATAGGTGAGG+GGG + chr7_3:63608207-63608226 None:intergenic 40.0%
GAGAGAATAGTATAGGTGAG+GGG + chr7_3:63608208-63608227 None:intergenic 40.0%
GTGAGAGAATAGTATAGGTG+AGG + chr7_3:63608210-63608229 None:intergenic 40.0%
CATTGGTGTGTAAGGTTTGA+TGG + chr7_3:63608286-63608305 None:intergenic 40.0%
CATCAAACCTTACACACCAA+TGG - chr7_3:63608284-63608303 Msa1116080:three_prime_UTR 40.0%
TCAGAAGAGTCCTCTCTTAA+TGG - chr7_3:63608327-63608346 Msa1116080:three_prime_UTR 40.0%
! TCTGGTTCAAAGAAAGGAAG+AGG - chr7_3:63608450-63608469 Msa1116080:CDS 40.0%
GTTCAAAGAAAGGAAGAGGT+GGG - chr7_3:63608454-63608473 Msa1116080:CDS 40.0%
TTCAACATTCTCAACCACCT+AGG - chr7_3:63608481-63608500 Msa1116080:CDS 40.0%
!! GGTTTTGTCAACAATGTAGC+AGG - chr7_3:63608622-63608641 Msa1116080:CDS 40.0%
ATGGAGAAGAAAAAAGGGGT+AGG + chr7_3:63608663-63608682 None:intergenic 40.0%
GCTATGTTATCCTGTTTGGT+CGG - chr7_3:63608844-63608863 Msa1116080:CDS 40.0%
AGACTCCTACATACCTAAAC+GGG + chr7_3:63609248-63609267 None:intergenic 40.0%
AGGATAATAGGATGGTGATC+AGG - chr7_3:63609336-63609355 Msa1116080:intron 40.0%
GGATAATAGGATGGTGATCA+GGG - chr7_3:63609337-63609356 Msa1116080:intron 40.0%
CAGGAATAAAGAGGACCAAA+AGG + chr7_3:63609405-63609424 None:intergenic 40.0%
! CTTTTGGTCCTCTTTATTCC+TGG - chr7_3:63609403-63609422 Msa1116080:intron 40.0%
GTACTATGTGGCACTTGTAA+AGG - chr7_3:63609425-63609444 Msa1116080:intron 40.0%
! ATTGAATGGAAGCATGGATC+AGG - chr7_3:63609492-63609511 Msa1116080:intron 40.0%
CCGTGCAATTATTCTACAGT+TGG + chr7_3:63609523-63609542 None:intergenic 40.0%
AATGCAGACTTAAGAACCCT+AGG + chr7_3:63609646-63609665 None:intergenic 40.0%
! TGGTAATGAGAGTTTGAGAG+TGG - chr7_3:63609687-63609706 Msa1116080:intron 40.0%
TCATGCTATCGTGTGATCAT+AGG - chr7_3:63609718-63609737 Msa1116080:intron 40.0%
GAAAGCAAAAAGACCAGGAT+TGG + chr7_3:63609914-63609933 None:intergenic 40.0%
GTGTAGCTGAAATAGCTTTC+TGG - chr7_3:63610115-63610134 Msa1116080:intron 40.0%
! TCTTATGGCTCATCTAGGAT+TGG - chr7_3:63610171-63610190 Msa1116080:intron 40.0%
AACTTACTACAGATCAGAGG+TGG + chr7_3:63610221-63610240 None:intergenic 40.0%
!! GCAAAGGGTGCTTACATATA+GGG + chr7_3:63610450-63610469 None:intergenic 40.0%
CACCCTTTGCCTCTAATAAA+AGG - chr7_3:63610460-63610479 Msa1116080:intron 40.0%
! CACCCTTTTATTAGAGGCAA+AGG + chr7_3:63610466-63610485 None:intergenic 40.0%
! AGGGTGCTTAGATATAAGGA+CGG - chr7_3:63610480-63610499 Msa1116080:intron 40.0%
TGCTTAGATATAAGGACGGA+GGG - chr7_3:63610484-63610503 Msa1116080:intron 40.0%
GCTGCAGTTGCTATGTTATT+AGG - chr7_3:63610521-63610540 Msa1116080:intron 40.0%
AGGCAACGACCAACATTATT+AGG - chr7_3:63610541-63610560 Msa1116080:intron 40.0%
!! AGACTGCATTGATTGGGATT+CGG - chr7_3:63610665-63610684 Msa1116080:intron 40.0%
TCGAAGAAATTCGAGAGTTG+TGG + chr7_3:63610727-63610746 None:intergenic 40.0%
TTTGCTTCAAACCCGAAACA+TGG - chr7_3:63611271-63611290 Msa1116080:intron 40.0%
AGTTTCTCAGACCATGTTTC+GGG + chr7_3:63611285-63611304 None:intergenic 40.0%
GAGTTTCTCAGACCATGTTT+CGG + chr7_3:63611286-63611305 None:intergenic 40.0%
ATCAAACCACAACAATCGGT+TGG - chr7_3:63611323-63611342 Msa1116080:intron 40.0%
!! CTTTTCTTACAAGGTTCGGT+GGG - chr7_3:63611382-63611401 Msa1116080:intron 40.0%
AGATGTAGCATGTTGTGTCA+TGG + chr7_3:63611569-63611588 None:intergenic 40.0%
CAACATGCTACATCTTCTCA+TGG - chr7_3:63611574-63611593 Msa1116080:CDS 40.0%
AGAGTTGACTACCAAGATCA+GGG + chr7_3:63611639-63611658 None:intergenic 40.0%
GTTTAAACTGTTAGGCAAGG+TGG - chr7_3:63611859-63611878 Msa1116080:five_prime_UTR 40.0%
TTAAACTGTTAGGCAAGGTG+GGG - chr7_3:63611861-63611880 Msa1116080:five_prime_UTR 40.0%
AAAAACCACAGAGTGAAGCA+AGG + chr7_3:63611891-63611910 None:intergenic 40.0%
ACAAAAGAGGAAGAGGTGGA+AGG + chr7_3:63608095-63608114 None:intergenic 45.0%
GAAGACAAAAGAGGAAGAGG+TGG + chr7_3:63608099-63608118 None:intergenic 45.0%
GTGGAAGACAAAAGAGGAAG+AGG + chr7_3:63608102-63608121 None:intergenic 45.0%
GAGAATAGTATAGGTGAGGG+GGG + chr7_3:63608206-63608225 None:intergenic 45.0%
GGTTGCTAGATTGTGCTCAT+TGG + chr7_3:63608262-63608281 None:intergenic 45.0%
TGGTGTGTAAGGTTTGATGG+TGG + chr7_3:63608283-63608302 None:intergenic 45.0%
CCTGAATCCATTGGTGTGTA+AGG + chr7_3:63608294-63608313 None:intergenic 45.0%
! CCTTACACACCAATGGATTC+AGG - chr7_3:63608291-63608310 Msa1116080:three_prime_UTR 45.0%
! TACACACCAATGGATTCAGG+AGG - chr7_3:63608294-63608313 Msa1116080:three_prime_UTR 45.0%
ACTACCACTATCATTGCTGC+TGG - chr7_3:63608414-63608433 Msa1116080:CDS 45.0%
AGAACCAGCAGCAATGATAG+TGG + chr7_3:63608421-63608440 None:intergenic 45.0%
GGTTCAAAGAAAGGAAGAGG+TGG - chr7_3:63608453-63608472 Msa1116080:CDS 45.0%
CATCCTTCAACTTGACACCT+AGG + chr7_3:63608501-63608520 None:intergenic 45.0%
TCACCTGCTGTTACTGTTTC+TGG - chr7_3:63608588-63608607 Msa1116080:CDS 45.0%
AGACCAGAAACAGTAACAGC+AGG + chr7_3:63608594-63608613 None:intergenic 45.0%
!! CTGTTTCTGGTCTTCAACAG+AGG - chr7_3:63608601-63608620 Msa1116080:CDS 45.0%
GATTTGGGTCGATTGTGTTC+CGG - chr7_3:63608974-63608993 Msa1116080:intron 45.0%
!!! ACTTGTAGGTGTTTTGAGGC+TGG - chr7_3:63609220-63609239 Msa1116080:intron 45.0%
GACTCCTACATACCTAAACG+GGG + chr7_3:63609247-63609266 None:intergenic 45.0%
TACAAGTGCCACATAGTACC+AGG + chr7_3:63609424-63609443 None:intergenic 45.0%
TGGATAGTGCAATCCAATCC+TGG - chr7_3:63609898-63609917 Msa1116080:intron 45.0%
AGGTGGATCACCATCATCAT+TGG - chr7_3:63610010-63610029 Msa1116080:intron 45.0%
TGCTTACATATAGGGACGGA+GGG + chr7_3:63610442-63610461 None:intergenic 45.0%
! AGGGTGCTTACATATAGGGA+CGG + chr7_3:63610446-63610465 None:intergenic 45.0%
!! GGCAAAGGGTGCTTACATAT+AGG + chr7_3:63610451-63610470 None:intergenic 45.0%
GTGCTTAGATATAAGGACGG+AGG - chr7_3:63610483-63610502 Msa1116080:intron 45.0%
!! ACGGAGGGAGTACTAATGTT+AGG - chr7_3:63610499-63610518 Msa1116080:intron 45.0%
! TAGGCAGCCGTTGTGTTATT+AGG - chr7_3:63610567-63610586 Msa1116080:intron 45.0%
!! GACTGCATTGATTGGGATTC+GGG - chr7_3:63610666-63610685 Msa1116080:intron 45.0%
AGGATAAGAGAGAGCTTGGT+GGG + chr7_3:63611050-63611069 None:intergenic 45.0%
AGAAACTCACTTCCATCACC+TGG - chr7_3:63611298-63611317 Msa1116080:intron 45.0%
! GTGGTTTGATTTCCAGGTGA+TGG + chr7_3:63611313-63611332 None:intergenic 45.0%
CCACCGAACCTTGTAAGAAA+AGG + chr7_3:63611384-63611403 None:intergenic 45.0%
! CCTTTTCTTACAAGGTTCGG+TGG - chr7_3:63611381-63611400 Msa1116080:intron 45.0%
ACTCCAGTGTAAGTTTCCTC+GGG + chr7_3:63611439-63611458 None:intergenic 45.0%
GACTCCAGTGTAAGTTTCCT+CGG + chr7_3:63611440-63611459 None:intergenic 45.0%
GGGACAACCTCGTAATTGTT+TGG + chr7_3:63611619-63611638 None:intergenic 45.0%
GAGAGTTGACTACCAAGATC+AGG + chr7_3:63611640-63611659 None:intergenic 45.0%
! GATCTTGGTAGTCAACTCTC+TGG - chr7_3:63611640-63611659 Msa1116080:CDS 45.0%
TTGAGAAGATTCATAGGCCC+TGG + chr7_3:63611719-63611738 None:intergenic 45.0%
GGGCCTATGAATCTTCTCAA+TGG - chr7_3:63611719-63611738 Msa1116080:CDS 45.0%
! GGAGTGGTGGTTGTTGTTGT+TGG + chr7_3:63608178-63608197 None:intergenic 50.0%
GAGTTGCCTCCTGAATCCAT+TGG + chr7_3:63608303-63608322 None:intergenic 50.0%
! GCTGGTTCTCCTTCTTCTTC+TGG - chr7_3:63608432-63608451 Msa1116080:CDS 50.0%
CCTTCAACTTGACACCTAGG+TGG + chr7_3:63608498-63608517 None:intergenic 50.0%
!! CCACCTAGGTGTCAAGTTGA+AGG - chr7_3:63608495-63608514 Msa1116080:CDS 50.0%
TGGTCCCCGTTTAGGTATGT+AGG - chr7_3:63609240-63609259 Msa1116080:intron 50.0%
CTTACATATAGGGACGGAGG+GGG + chr7_3:63610440-63610459 None:intergenic 50.0%
GCTTACATATAGGGACGGAG+GGG + chr7_3:63610441-63610460 None:intergenic 50.0%
GTGCTTACATATAGGGACGG+AGG + chr7_3:63610443-63610462 None:intergenic 50.0%
! CAGCCGTTGTGTTATTAGGC+AGG - chr7_3:63610571-63610590 Msa1116080:intron 50.0%
CCGCCTGCCTAATAACACAA+CGG + chr7_3:63610577-63610596 None:intergenic 50.0%
! CCGTTGTGTTATTAGGCAGG+CGG - chr7_3:63610574-63610593 Msa1116080:intron 50.0%
TATGACCAGCTAGTCGTCTG+CGG + chr7_3:63611008-63611027 None:intergenic 50.0%
! GATAAGAGAGAGCTTGGTGG+GGG + chr7_3:63611048-63611067 None:intergenic 50.0%
! GGATAAGAGAGAGCTTGGTG+GGG + chr7_3:63611049-63611068 None:intergenic 50.0%
GAGGATAAGAGAGAGCTTGG+TGG + chr7_3:63611051-63611070 None:intergenic 50.0%
CGTGAGGATAAGAGAGAGCT+TGG + chr7_3:63611054-63611073 None:intergenic 50.0%
AGAAAGTCTGGCAAAGCGTG+AGG + chr7_3:63611070-63611089 None:intergenic 50.0%
TCAACAGGTAACAGCGACAG+AGG - chr7_3:63611229-63611248 Msa1116080:intron 50.0%
!! TTCTTACAAGGTTCGGTGGG+TGG - chr7_3:63611385-63611404 Msa1116080:intron 50.0%
!! TCTTACAAGGTTCGGTGGGT+GGG - chr7_3:63611386-63611405 Msa1116080:intron 50.0%
CGAAACACAGAACCAAGTCC+TGG - chr7_3:63611511-63611530 Msa1116080:intron 50.0%
TACGAGGTTGTCCCTGATCT+TGG - chr7_3:63611625-63611644 Msa1116080:CDS 50.0%
TGAGCTTGATCTGTCACAGC+AGG - chr7_3:63611663-63611682 Msa1116080:CDS 50.0%
GAGCTTGATCTGTCACAGCA+GGG - chr7_3:63611664-63611683 Msa1116080:CDS 50.0%
TTGATCTGTCACAGCAGGGA+AGG - chr7_3:63611668-63611687 Msa1116080:CDS 50.0%
!! GCAGGGAAGGAGGCATTATA+TGG - chr7_3:63611681-63611700 Msa1116080:CDS 50.0%
AGTATAGGTGAGGGGGGTCT+GGG + chr7_3:63608200-63608219 None:intergenic 55.0%
TAGTATAGGTGAGGGGGGTC+TGG + chr7_3:63608201-63608220 None:intergenic 55.0%
! TTTGAGGCTGGTCCCCGTTT+AGG - chr7_3:63609232-63609251 Msa1116080:intron 55.0%
ACAGGTAACAGCGACAGAGG+TGG - chr7_3:63611232-63611251 Msa1116080:intron 55.0%
CAGAGGTGGCAGCTTCTCAA+TGG - chr7_3:63611246-63611265 Msa1116080:intron 55.0%
CCAAGGCCAACCGATTGTTG+TGG + chr7_3:63611332-63611351 None:intergenic 55.0%
!! CCACAACAATCGGTTGGCCT+TGG - chr7_3:63611329-63611348 Msa1116080:intron 55.0%
!! AACAATCGGTTGGCCTTGGC+CGG - chr7_3:63611333-63611352 Msa1116080:intron 55.0%
CCAGTGTAAGTTTCCTCGGG+AGG + chr7_3:63611436-63611455 None:intergenic 55.0%
CCTCCCGAGGAAACTTACAC+TGG - chr7_3:63611433-63611452 Msa1116080:intron 55.0%
ATCTGTCACAGCAGGGAAGG+AGG - chr7_3:63611671-63611690 Msa1116080:CDS 55.0%
!! GCTAGCCTTGCTTCACTCTG+TGG - chr7_3:63611883-63611902 Msa1116080:five_prime_UTR 55.0%
GTATAGGTGAGGGGGGTCTG+GGG + chr7_3:63608199-63608218 None:intergenic 60.0%
AGTTGCCGCAGACGACTAGC+TGG - chr7_3:63611000-63611019 Msa1116080:intron 60.0%
! CTGGTCATAACGAGCGTCGC+AGG - chr7_3:63611019-63611038 Msa1116080:intron 60.0%
!! ACAATCGGTTGGCCTTGGCC+GGG - chr7_3:63611334-63611353 Msa1116080:intron 60.0%
AGTTTCCTCGGGAGGATGCC+TGG + chr7_3:63611428-63611447 None:intergenic 60.0%
!! CAATCGGTTGGCCTTGGCCG+GGG - chr7_3:63611335-63611354 Msa1116080:intron 65.0%
!! TTGGCCTTGGCCGGGGAACA+CGG - chr7_3:63611342-63611361 Msa1116080:intron 65.0%
GATGGCGACTCCGTGTTCCC+CGG + chr7_3:63611355-63611374 None:intergenic 65.0%
GTGGGTGGGACAAGCTTCCC+TGG - chr7_3:63611400-63611419 Msa1116080:intron 65.0%
GGACAAGCTTCCCTGGTGCC+AGG - chr7_3:63611407-63611426 Msa1116080:intron 65.0%
GACTCCGTGTTCCCCGGCCA+AGG + chr7_3:63611349-63611368 None:intergenic 70.0%
CGGGAGGATGCCTGGCACCA+GGG + chr7_3:63611420-63611439 None:intergenic 70.0%
TCGGGAGGATGCCTGGCACC+AGG + chr7_3:63611421-63611440 None:intergenic 70.0%
! TGGTGCCAGGCATCCTCCCG+AGG - chr7_3:63611420-63611439 Msa1116080:intron 70.0%
GAGGGGGGTCTGGGGAGTGG+TGG + chr7_3:63608191-63608210 None:intergenic 75.0%
GGTGAGGGGGGTCTGGGGAG+TGG + chr7_3:63608194-63608213 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 63608075 63612080 63608075 ID=Msa1116080;Name=Msa1116080
chr7_3 mRNA 63608075 63612080 63608075 ID=Msa1116080-mRNA-1;Parent=Msa1116080;Name=Msa1116080-mRNA-1;_AED=0.05;_eAED=0.05;_QI=228|1|1|1|1|0.66|3|330|331
chr7_3 exon 63608075 63608919 63608075 ID=Msa1116080-mRNA-1:exon:14985;Parent=Msa1116080-mRNA-1
chr7_3 exon 63609053 63609192 63609053 ID=Msa1116080-mRNA-1:exon:14984;Parent=Msa1116080-mRNA-1
chr7_3 exon 63611512 63612080 63611512 ID=Msa1116080-mRNA-1:exon:14983;Parent=Msa1116080-mRNA-1
chr7_3 five_prime_UTR 63611853 63612080 63611853 ID=Msa1116080-mRNA-1:five_prime_utr;Parent=Msa1116080-mRNA-1
chr7_3 CDS 63611512 63611852 63611512 ID=Msa1116080-mRNA-1:cds;Parent=Msa1116080-mRNA-1
chr7_3 CDS 63609053 63609192 63609053 ID=Msa1116080-mRNA-1:cds;Parent=Msa1116080-mRNA-1
chr7_3 CDS 63608405 63608919 63608405 ID=Msa1116080-mRNA-1:cds;Parent=Msa1116080-mRNA-1
chr7_3 three_prime_UTR 63608075 63608404 63608075 ID=Msa1116080-mRNA-1:three_prime_utr;Parent=Msa1116080-mRNA-1
Gene Sequence

>Msa1116080

ATGGATTCAGGAGGCAACTCTTCTTCAGAAGAGTCCTCTCTTAATGGCTTGAAATTTGGCCAACGAATCTATTTTGAAGATACAGCTCTTGCTGCTACTACTACTACGACTACTACCACTATCATTGCTGCTGGTTCTCCTTCTTCTTCTGGTTCAAAGAAAGGAAGAGGTGGGTCAGTTCAACATTCTCAACCACCTAGGTGTCAAGTTGAAGGATGTAAACTAGATCTGACTGATGCTAAAGCTTACTATTCTAGACACAAAGTTTGTAGCATGCACTCTAAATCACCTGCTGTTACTGTTTCTGGTCTTCAACAGAGGTTTTGTCAACAATGTAGCAGATTTCATCAACTTTCTGAGTTTGATCAAGGAAAAAGAAGTTGCCGCAGACGACTAGCTGGTCATAACGAGCGTCGCAGGAAGCCCCCACCAAGCTCTCTCTTATCCTCACGCTTTGCCAGACTTTCTTCATCTGTTTTTGGTAACAGCGACAGAGGTGGCAGCTTCTCAATGGAATTTGCTTCAAACCCGAAACATGGTCTGAGAAACTCACTTCCATCACCTGGAAATCAAACCACAACAATCGGTTGGCCTTGGCCGGGGAACACGGAGTCGCCATCTGACAACCTTTTCTTACAAGGTTCGGTGGGTGGGACAAGCTTCCCTGGTGCCAGGCATCCTCCCGAGGAAACTTACACTGGAGTCACAGATTCAAACTGTGCTCTCTCTCTTCTGTCAAATCAAACATGGGGTTCTCGAAACACAGAACCAAGTCCTGGATTGAATAACATGCTGAATTTCAATGGGACATCCATGACACAACATGCTACATCTTCTCATGGTGTAGCCATGCATCAAATTCCAAACAATTACGAGGTTGTCCCTGATCTTGGTAGTCAACTCTCTGGTGAGCTTGATCTGTCACAGCAGGGAAGGAGGCATTATATGGATGTAGAACATTCCAGGGCCTATGAATCTTCTCAATGGTCACTGTAA
Protein sequence

>Msa1116080

MDSGGNSSSEESSLNGLKFGQRIYFEDTALAATTTTTTTTIIAAGSPSSSGSKKGRGGSVQHSQPPRCQVEGCKLDLTDAKAYYSRHKVCSMHSKSPAVTVSGLQQRFCQQCSRFHQLSEFDQGKRSCRRRLAGHNERRRKPPPSSLLSSRFARLSSSVFGNSDRGGSFSMEFASNPKHGLRNSLPSPGNQTTTIGWPWPGNTESPSDNLFLQGSVGGTSFPGARHPPEETYTGVTDSNCALSLLSNQTWGSRNTEPSPGLNNMLNFNGTSMTQHATSSHGVAMHQIPNNYEVVPDLGSQLSGELDLSQQGRRHYMDVEHSRAYESSQWSL*