AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1162500

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1162500 MtrunA17_Chr7g0258471 90.294 340 21 2 1 331 75 411 0.0 549
Msa1162500 MtrunA17_Chr1g0175021 50.840 238 69 11 115 315 8 234 1.65e-53 175
Msa1162500 MtrunA17_Chr3g0122411 39.689 257 130 7 14 257 117 361 2.90e-45 159
Msa1162500 MtrunA17_Chr7g0231911 50.000 134 61 1 14 147 101 228 4.66e-39 140
Msa1162500 MtrunA17_Chr4g0046991 75.325 77 19 0 65 141 70 146 7.99e-38 132
Msa1162500 MtrunA17_Chr8g0360361 70.732 82 24 0 65 146 62 143 1.78e-37 132
Msa1162500 MtrunA17_Chr2g0308321 52.632 152 66 4 12 163 119 264 2.07e-36 137
Msa1162500 MtrunA17_Chr4g0061651 53.030 132 53 3 13 142 73 197 4.88e-36 135
Msa1162500 MtrunA17_Chr3g0132091 46.617 133 69 1 17 147 20 152 3.35e-35 131
Msa1162500 MtrunA17_Chr5g0420051 61.957 92 35 0 66 157 179 270 1.82e-34 130
Msa1162500 MtrunA17_Chr2g0282521 66.667 87 25 1 57 143 57 139 2.48e-34 122
Msa1162500 MtrunA17_Chr8g0334671 52.381 126 47 1 16 141 148 260 2.61e-34 128
Msa1162500 MtrunA17_Chr1g0175031 61.386 101 39 0 14 114 20 120 2.81e-34 122
Msa1162500 MtrunA17_Chr7g0224821 63.953 86 31 0 63 148 72 157 5.07e-33 125
Msa1162500 MtrunA17_Chr8g0377421 45.968 124 65 1 18 141 84 205 1.17e-32 123
Msa1162500 MtrunA17_Chr8g0377401 48.485 132 49 3 9 140 122 234 2.46e-32 121
Msa1162500 MtrunA17_Chr8g0386271 59.091 88 36 0 63 150 94 181 4.27e-32 123
Msa1162500 MtrunA17_Chr2g0302791 59.574 94 38 0 53 146 124 217 3.61e-31 124
Msa1162500 MtrunA17_Chr1g0162871 58.333 96 40 0 52 147 88 183 9.94e-31 122
Msa1162500 MtrunA17_Chr1g0194121 47.727 132 69 0 10 141 89 220 7.09e-30 120
Msa1162500 MtrunA17_Chr7g0270541 68.919 74 23 0 68 141 145 218 1.09e-29 119
Msa1162500 MtrunA17_Chr2g0286661 51.351 74 36 0 68 141 103 176 1.08e-21 95.9
Msa1162500 MtrunA17_Chr8g0377431 40.164 122 66 3 4 121 86 204 3.96e-19 84.3
Msa1162500 MtrunA17_Chr2g0317041 61.538 52 20 0 66 117 97 148 7.59e-16 73.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1162500 AT2G42200.1 40.957 376 129 16 17 331 32 375 1.18e-61 201
Msa1162500 AT3G57920.1 39.669 363 136 16 17 331 27 354 1.27e-59 195
Msa1162500 AT1G27360.2 48.936 141 56 3 8 142 119 249 7.05e-37 137
Msa1162500 AT1G27360.1 48.936 141 56 3 8 142 119 249 7.05e-37 137
Msa1162500 AT1G27360.3 48.936 141 56 3 8 142 119 249 7.05e-37 137
Msa1162500 AT1G27360.4 48.936 141 56 3 8 142 119 249 7.05e-37 137
Msa1162500 AT1G69170.1 61.062 113 41 2 52 162 109 220 1.29e-36 136
Msa1162500 AT1G27370.6 49.630 135 65 3 8 142 119 250 2.29e-36 134
Msa1162500 AT5G43270.3 53.488 129 58 1 16 144 119 245 4.18e-36 135
Msa1162500 AT5G43270.1 53.488 129 58 1 16 144 119 245 4.18e-36 135
Msa1162500 AT5G43270.2 53.488 129 58 1 16 144 119 245 4.18e-36 135
Msa1162500 AT1G27370.1 49.630 135 65 3 8 142 119 250 8.56e-36 134
Msa1162500 AT1G27370.5 49.630 135 65 3 8 142 119 250 8.56e-36 134
Msa1162500 AT1G27370.3 49.630 135 65 3 8 142 119 250 8.56e-36 134
Msa1162500 AT1G27370.2 49.630 135 65 3 8 142 119 250 8.56e-36 134
Msa1162500 AT1G27370.4 49.630 135 65 3 8 142 119 250 8.56e-36 134
Msa1162500 AT1G27370.7 49.630 135 65 3 8 142 119 250 8.56e-36 134
Msa1162500 AT2G33810.1 72.973 74 20 0 68 141 54 127 9.82e-36 126
Msa1162500 AT5G50570.1 47.333 150 73 2 4 147 31 180 1.00e-34 130
Msa1162500 AT5G50570.2 47.333 150 73 2 4 147 31 180 1.00e-34 130
Msa1162500 AT5G50670.1 47.333 150 73 2 4 147 31 180 1.00e-34 130
Msa1162500 AT5G50670.2 47.333 150 73 2 4 147 31 180 1.00e-34 130
Msa1162500 AT3G15270.1 70.270 74 22 0 68 141 63 136 1.33e-34 125
Msa1162500 AT1G02065.1 63.333 90 33 0 52 141 172 261 2.25e-33 126
Msa1162500 AT1G53160.3 61.538 91 30 1 56 146 47 132 5.32e-33 120
Msa1162500 AT1G53160.2 61.538 91 30 1 56 146 47 132 9.50e-33 120
Msa1162500 AT1G53160.1 61.538 91 30 1 56 146 47 132 9.50e-33 120
Msa1162500 AT2G47070.1 52.991 117 48 1 28 144 73 182 9.90e-33 129
Msa1162500 AT3G60030.1 47.200 125 66 0 23 147 82 206 6.53e-32 126
Msa1162500 AT1G76580.2 62.500 88 33 0 66 153 112 199 3.59e-31 124
Msa1162500 AT1G76580.3 62.500 88 33 0 66 153 112 199 4.03e-31 124
Msa1162500 AT1G76580.1 62.500 88 33 0 66 153 112 199 4.44e-31 124
Msa1162500 AT1G20980.1 63.333 90 32 1 52 141 105 193 1.95e-29 119
Msa1162500 AT5G18830.2 46.154 91 45 1 53 143 127 213 2.92e-21 95.1
Msa1162500 AT5G18830.3 46.154 91 45 1 53 143 127 213 3.44e-21 95.1
Msa1162500 AT5G18830.1 46.154 91 45 1 53 143 127 213 3.44e-21 95.1
Msa1162500 AT2G47070.2 75.472 53 13 0 92 144 1 53 1.70e-20 92.8
Msa1162500 AT1G02065.2 56.250 64 28 0 52 115 172 235 4.37e-18 82.8

Find 123 sgRNAs with CRISPR-Local

Find 278 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAATGCATTTGTTTGCTTTC+AGG 0.081646 7_4:-53194717 Msa1162500:three_prime_UTR
TCACCTGCTGTTACTGTTTC+TGG 0.105065 7_4:-53197883 Msa1162500:CDS
TCAGAAGAGTCCTCTCTTAA+TGG 0.174051 7_4:-53198144 Msa1162500:CDS
TCTCTTAATGGCTTGAAATT+TGG 0.181393 7_4:-53198132 Msa1162500:CDS
GCTGGTTCTCCTTCTTCTTC+TGG 0.208998 7_4:-53198039 Msa1162500:CDS
AGTTTCTCAGACCATGTTTC+GGG 0.285688 7_4:+53195183 None:intergenic
GGAGTGGTGGTTGTTGTTGT+TGG 0.318431 7_4:+53198296 None:intergenic
GAAGTTGTTTGATGTGGATT+TGG 0.343895 7_4:-53194533 Msa1162500:three_prime_UTR
ATTGTTGTGGTTTGATTTCC+AGG 0.354503 7_4:+53195149 None:intergenic
CCTTACACACCAATGGATTC+AGG 0.354583 7_4:-53198180 Msa1162500:exon
TTTGGTTTGTTTAAACTGTT+AGG 0.360942 7_4:-53194614 Msa1162500:three_prime_UTR
CCTGAATCCATTGGTGTGTA+AGG 0.369337 7_4:+53198180 None:intergenic
CATTGGTGTGTAAGGTTTGA+TGG 0.375253 7_4:+53198188 None:intergenic
AATAACATGCTGAATTTCAA+TGG 0.376067 7_4:-53194927 Msa1162500:CDS
GGGACAACCTCGTAATTGTT+TGG 0.378584 7_4:+53194849 None:intergenic
GCAGGGAAGGAGGCATTATA+TGG 0.380825 7_4:-53194784 Msa1162500:CDS
CAACTTTCTGAGTTTGATCA+AGG 0.380902 7_4:-53195495 Msa1162500:CDS
GAGTTTCTCAGACCATGTTT+CGG 0.384822 7_4:+53195182 None:intergenic
TCTTCTTCTGGTTCAAAGAA+AGG 0.384894 7_4:-53198027 Msa1162500:CDS
TACGAGGTTGTCCCTGATCT+TGG 0.397510 7_4:-53194840 Msa1162500:CDS
AACAATCGGTTGGCCTTGGC+CGG 0.403146 7_4:-53195132 Msa1162500:CDS
GGTTGCTAGATTGTGCTCAT+TGG 0.427126 7_4:+53198212 None:intergenic
GGACAAGCTTCCCTGGTGCC+AGG 0.429885 7_4:-53195058 Msa1162500:CDS
GACTCCAGTGTAAGTTTCCT+CGG 0.430936 7_4:+53195028 None:intergenic
AAGAAGAGAGTGAATAATAG+TGG 0.442195 7_4:+53198340 None:intergenic
ATATGGATGTAGAACATTCC+AGG 0.443177 7_4:-53194767 Msa1162500:CDS
GTGGGTGGGACAAGCTTCCC+TGG 0.445665 7_4:-53195065 Msa1162500:CDS
CTCTTCTGTCAAATCAAACA+TGG 0.449340 7_4:-53194983 Msa1162500:CDS
CTGGTCATAACGAGCGTCGC+AGG 0.452231 7_4:-53195446 Msa1162500:CDS
GATAATAAACTAGATTTGAG+AGG 0.457442 7_4:+53194393 None:intergenic
TGACAGTGAGAGAATAGTAT+AGG 0.462977 7_4:+53198259 None:intergenic
ATGTTATTCAATCCAGGACT+TGG 0.463473 7_4:+53194942 None:intergenic
AGTTTCCTCGGGAGGATGCC+TGG 0.464469 7_4:+53195040 None:intergenic
GAGAGTTGACTACCAAGATC+AGG 0.468364 7_4:+53194828 None:intergenic
CCACAACAATCGGTTGGCCT+TGG 0.472552 7_4:-53195136 Msa1162500:CDS
GTGGAAGACAAAAGAGGAAG+AGG 0.472761 7_4:+53198372 None:intergenic
CAATCGGTTGGCCTTGGCCG+GGG 0.476765 7_4:-53195130 Msa1162500:CDS
TTGGCCTTGGCCGGGGAACA+CGG 0.477293 7_4:-53195123 Msa1162500:CDS
TTCTTTGAACCAGAAGAAGA+AGG 0.479165 7_4:+53198030 None:intergenic
ACTACTGCAACATTCATTTG+CGG 0.479277 7_4:+53194479 None:intergenic
ACAATCGGTTGGCCTTGGCC+GGG 0.480117 7_4:-53195131 Msa1162500:CDS
TGACCATTGAGAAGATTCAT+AGG 0.480203 7_4:+53194743 None:intergenic
CTGTTTCTGGTCTTCAACAG+AGG 0.487310 7_4:-53197870 Msa1162500:CDS
TTCAGCATGTTATTCAATCC+AGG 0.487732 7_4:+53194936 None:intergenic
TATCTTCAAAATAGATTCGT+TGG 0.488281 7_4:+53198109 None:intergenic
TTCTTACAAGGTTCGGTGGG+TGG 0.489798 7_4:-53195080 Msa1162500:CDS
CGTGAGGATAAGAGAGAGCT+TGG 0.490068 7_4:+53195414 None:intergenic
TTGAGAAGATTCATAGGCCC+TGG 0.491228 7_4:+53194749 None:intergenic
GGAAATCAAACCACAACAAT+CGG 0.495615 7_4:-53195146 Msa1162500:CDS
GTGGTTTGATTTCCAGGTGA+TGG 0.496848 7_4:+53195155 None:intergenic
GACTCCGTGTTCCCCGGCCA+AGG 0.497185 7_4:+53195119 None:intergenic
ATAACATGCTGAATTTCAAT+GGG 0.498202 7_4:-53194926 Msa1162500:CDS
CCACCTAGGTGTCAAGTTGA+AGG 0.498451 7_4:-53197976 Msa1162500:CDS
AGGATAAGAGAGAGCTTGGT+GGG 0.499295 7_4:+53195418 None:intergenic
TTTCACAAATATTTGAACTC+AGG 0.499742 7_4:-53194680 Msa1162500:three_prime_UTR
TTTAAACTGTTAGGCAAGGT+GGG 0.501008 7_4:-53194605 Msa1162500:three_prime_UTR
TGAGAGAATAGTATAGGTGA+GGG 0.503559 7_4:+53198265 None:intergenic
CCACCGAACCTTGTAAGAAA+AGG 0.504768 7_4:+53195084 None:intergenic
CAGAGGTGGCAGCTTCTCAA+TGG 0.508189 7_4:-53195219 Msa1162500:CDS
TGAGCTTGATCTGTCACAGC+AGG 0.508601 7_4:-53194802 Msa1162500:CDS
AGAAGGAGAACCAGCAGCAA+TGG 0.514739 7_4:+53198047 None:intergenic
GAAGACAAAAGAGGAAGAGG+TGG 0.515918 7_4:+53198375 None:intergenic
CGTAACACAGAACCAAGTCC+TGG 0.517268 7_4:-53194954 Msa1162500:CDS
ACAAAAGAGGAAGAGGTGGA+AGG 0.517306 7_4:+53198379 None:intergenic
GATCTTGGTAGTCAACTCTC+TGG 0.522173 7_4:-53194825 Msa1162500:CDS
TTTCATGAAGTTGTTTGATG+TGG 0.530307 7_4:-53194539 Msa1162500:three_prime_UTR
TCTTACAAGGTTCGGTGGGT+GGG 0.530469 7_4:-53195079 Msa1162500:CDS
AGAGAATAGTATAGGTGAGG+GGG 0.537430 7_4:+53198267 None:intergenic
GTTTAAACTGTTAGGCAAGG+TGG 0.538745 7_4:-53194606 Msa1162500:three_prime_UTR
TCTGGTTCAAAGAAAGGAAG+AGG 0.539167 7_4:-53198021 Msa1162500:CDS
ACTACCACTACCATTGCTGC+TGG 0.541455 7_4:-53198057 Msa1162500:CDS
GCTAGCCTTGCTTCACTCTG+TGG 0.543180 7_4:-53194582 Msa1162500:three_prime_UTR
AGAACCAGCAGCAATGGTAG+TGG 0.545200 7_4:+53198053 None:intergenic
AGTTGCCGCAGACGACTAGC+TGG 0.548200 7_4:-53195465 Msa1162500:CDS
AGTGAAGTGGAAGACAAAAG+AGG 0.550668 7_4:+53198366 None:intergenic
GTGAGAGAATAGTATAGGTG+AGG 0.554444 7_4:+53198264 None:intergenic
ACTCCAGTGTAAGTTTCCTC+GGG 0.556391 7_4:+53195029 None:intergenic
CGGGAGGATGCCTGGCACCA+GGG 0.558370 7_4:+53195048 None:intergenic
TTTGTTTAAACTGTTAGGCA+AGG 0.559342 7_4:-53194609 Msa1162500:three_prime_UTR
TCTTCTGTCAAATCAAACAT+GGG 0.559601 7_4:-53194982 Msa1162500:CDS
CAACATGCTACATCTTCTCA+TGG 0.560658 7_4:-53194891 Msa1162500:CDS
CCAAGGCCAACCGATTGTTG+TGG 0.562819 7_4:+53195136 None:intergenic
GGGCCTATGAATCTTCTCAA+TGG 0.567201 7_4:-53194746 Msa1162500:CDS
AGAAACTCACTTCCATCACC+TGG 0.568923 7_4:-53195167 Msa1162500:CDS
CATCCTTCAACTTGACACCT+AGG 0.569400 7_4:+53197973 None:intergenic
TATGGATGTAGAACATTCCA+GGG 0.576787 7_4:-53194766 Msa1162500:CDS
ATCTGTCACAGCAGGGAAGG+AGG 0.579575 7_4:-53194794 Msa1162500:CDS
TTTGCTTCAAACCCGAAACA+TGG 0.581269 7_4:-53195194 Msa1162500:CDS
CATCAAACCTTACACACCAA+TGG 0.581957 7_4:-53198187 Msa1162500:exon
ATCAAACCACAACAATCGGT+TGG 0.583449 7_4:-53195142 Msa1162500:CDS
GATAAGAGAGAGCTTGGTGG+GGG 0.583606 7_4:+53195420 None:intergenic
TTAAACTGTTAGGCAAGGTG+GGG 0.589746 7_4:-53194604 Msa1162500:three_prime_UTR
ATAATAAACTAGATTTGAGA+GGG 0.593686 7_4:+53194394 None:intergenic
AGATGTAGCATGTTGTGTCA+TGG 0.599172 7_4:+53194899 None:intergenic
TTGATCTGTCACAGCAGGGA+AGG 0.603085 7_4:-53194797 Msa1162500:CDS
TGGTGCCAGGCATCCTCCCG+AGG 0.606308 7_4:-53195045 Msa1162500:CDS
GAGAGAATAGTATAGGTGAG+GGG 0.607703 7_4:+53198266 None:intergenic
ATAATAGTGGAAAAGTGAAG+TGG 0.610766 7_4:+53198353 None:intergenic
GGTTCAAAGAAAGGAAGAGG+TGG 0.614988 7_4:-53198018 Msa1162500:CDS
ATTGTTTGGAATTTGATGCA+TGG 0.618224 7_4:+53194863 None:intergenic
GAGAATAGTATAGGTGAGGG+GGG 0.622222 7_4:+53198268 None:intergenic
GAGGATAAGAGAGAGCTTGG+TGG 0.625727 7_4:+53195417 None:intergenic
AGACCAGAAACAGTAACAGC+AGG 0.628633 7_4:+53197880 None:intergenic
AAATTTCAAGCCATTAAGAG+AGG 0.629126 7_4:+53198134 None:intergenic
AGAGTTGACTACCAAGATCA+GGG 0.633166 7_4:+53194829 None:intergenic
CCTCCCGAGGAAACTTACAC+TGG 0.634056 7_4:-53195032 Msa1162500:CDS
CCAGTGTAAGTTTCCTCGGG+AGG 0.637090 7_4:+53195032 None:intergenic
GGATAAGAGAGAGCTTGGTG+GGG 0.640218 7_4:+53195419 None:intergenic
TGTAAGAAAAGGTTGTCAGA+TGG 0.641168 7_4:+53195095 None:intergenic
GAGCTTGATCTGTCACAGCA+GGG 0.647904 7_4:-53194801 Msa1162500:CDS
CTTCTGTCAAATCAAACATG+GGG 0.651750 7_4:-53194981 Msa1162500:CDS
GAATGTTGCAGTAGTATATG+CGG 0.654393 7_4:-53194471 Msa1162500:three_prime_UTR
AGAAAGTCTGGCAAAGCGTG+AGG 0.655770 7_4:+53195398 None:intergenic
GTTCAAAGAAAGGAAGAGGT+GGG 0.656815 7_4:-53198017 Msa1162500:CDS
TGGTGTGTAAGGTTTGATGG+TGG 0.657523 7_4:+53198191 None:intergenic
TCAACAGGTAACAGCGACAG+AGG 0.670073 7_4:-53195236 Msa1162500:intron
GAGTTGCCTCCTGAATCCAT+TGG 0.670435 7_4:+53198171 None:intergenic
CCTTCAACTTGACACCTAGG+TGG 0.670664 7_4:+53197976 None:intergenic
TATGACCAGCTAGTCGTCTG+CGG 0.672801 7_4:+53195460 None:intergenic
ACAGGTAACAGCGACAGAGG+TGG 0.683485 7_4:-53195233 Msa1162500:intron
TACACACCAATGGATTCAGG+AGG 0.706201 7_4:-53198177 Msa1162500:exon
TCAAATTCCAAACAATTACG+AGG 0.709188 7_4:-53194856 Msa1162500:CDS
TTCAACATTCTCAACCACCT+AGG 0.711691 7_4:-53197990 Msa1162500:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTATTTATTTATTAT+TGG - chr7_4:53197220-53197239 Msa1162500:intron 0.0%
!!! ATTTGATTCCTTTTTTTATT+TGG - chr7_4:53195390-53195409 Msa1162500:CDS 15.0%
!! ATATATATACTAATACTTGT+AGG - chr7_4:53195529-53195548 Msa1162500:intron 15.0%
!!! TTTTTGTCTTTTTAATCTTA+TGG - chr7_4:53196494-53196513 Msa1162500:intron 15.0%
!! TTCAGATGATATAATATTTA+TGG - chr7_4:53196727-53196746 Msa1162500:intron 15.0%
!! TACATGAGAAATAAAAAAGA+TGG + chr7_4:53195014-53195033 None:intergenic 20.0%
!!! TAAGGTCTTTTTCATTTTTT+TGG - chr7_4:53195058-53195077 Msa1162500:CDS 20.0%
!!! TAAAAAAAATGTTCTGGTTT+AGG - chr7_4:53195639-53195658 Msa1162500:intron 20.0%
!! TGCATTATTATTACAATGAA+AGG - chr7_4:53195983-53196002 Msa1162500:intron 20.0%
!!! TTTGATAGTAATAACTAAGA+TGG - chr7_4:53196079-53196098 Msa1162500:intron 20.0%
!! AATAGTACTAATTCTCAATA+AGG + chr7_4:53196208-53196227 None:intergenic 20.0%
!! TTATTGAGAATTAGTACTAT+TGG - chr7_4:53196207-53196226 Msa1162500:intron 20.0%
!!! TTTTCCAATTATTCACATTA+TGG + chr7_4:53196599-53196618 None:intergenic 20.0%
!! TGAATAAACAAGAAAACTAA+AGG - chr7_4:53196955-53196974 Msa1162500:intron 20.0%
!! TTTATTATTGGAAACAAGTA+AGG - chr7_4:53197232-53197251 Msa1162500:intron 20.0%
!! TTATTATTGGAAACAAGTAA+GGG - chr7_4:53197233-53197252 Msa1162500:intron 20.0%
! TATCTTCAAAATAGATTCGT+TGG + chr7_4:53194697-53194716 None:intergenic 25.0%
! AAAAGATGGAGAAGAAAAAA+GGG + chr7_4:53195000-53195019 None:intergenic 25.0%
! AAAAAGATGGAGAAGAAAAA+AGG + chr7_4:53195001-53195020 None:intergenic 25.0%
!! TTATTTCTCATGTAATGTGT+TGG - chr7_4:53195020-53195039 Msa1162500:CDS 25.0%
! ACCTATAATACAATAAAACC+CGG + chr7_4:53195119-53195138 None:intergenic 25.0%
! TATTATAGGTGTAGTATTGT+AGG - chr7_4:53195129-53195148 Msa1162500:CDS 25.0%
!! TGCTTTTGATATGTTTGATT+TGG - chr7_4:53195283-53195302 Msa1162500:intron 25.0%
!!! GCTTTTGATATGTTTGATTT+GGG - chr7_4:53195284-53195303 Msa1162500:intron 25.0%
! TCGCAATTCCAAATAAAAAA+AGG + chr7_4:53195401-53195420 None:intergenic 25.0%
!! CAGTGACAGATTATATATTT+TGG + chr7_4:53195506-53195525 None:intergenic 25.0%
!!! ACATTTTTTTTACAACTCCA+TGG + chr7_4:53195631-53195650 None:intergenic 25.0%
! GAGTTGTAAAAAAAATGTTC+TGG - chr7_4:53195633-53195652 Msa1162500:intron 25.0%
! GCTATAGAAATGAAATTGAA+TGG - chr7_4:53195801-53195820 Msa1162500:intron 25.0%
! GTATGGTAAAACTAAGTATT+TGG - chr7_4:53195868-53195887 Msa1162500:intron 25.0%
! TTATTACAATGAAAGGTTTC+TGG - chr7_4:53195990-53196009 Msa1162500:intron 25.0%
! AAAAAGACAAAAACAACACT+TGG + chr7_4:53196487-53196506 None:intergenic 25.0%
! TGTTCCATAATGTGAATAAT+TGG - chr7_4:53196592-53196611 Msa1162500:intron 25.0%
! TAAAGTAGTACATCTGATAT+CGG - chr7_4:53196665-53196684 Msa1162500:intron 25.0%
!! TATTTGACACTTTTATCAAC+AGG - chr7_4:53197552-53197571 Msa1162500:intron 25.0%
! AATAACATGCTGAATTTCAA+TGG - chr7_4:53197876-53197895 Msa1162500:CDS 25.0%
! ATAACATGCTGAATTTCAAT+GGG - chr7_4:53197877-53197896 Msa1162500:CDS 25.0%
! TTTCACAAATATTTGAACTC+AGG - chr7_4:53198123-53198142 Msa1162500:CDS 25.0%
!!! TTTGGTTTGTTTAAACTGTT+AGG - chr7_4:53198189-53198208 Msa1162500:exon 25.0%
! ATAATAGTGGAAAAGTGAAG+TGG + chr7_4:53194453-53194472 None:intergenic 30.0%
AAGAAGAGAGTGAATAATAG+TGG + chr7_4:53194466-53194485 None:intergenic 30.0%
AAATTTCAAGCCATTAAGAG+AGG + chr7_4:53194672-53194691 None:intergenic 30.0%
TCTCTTAATGGCTTGAAATT+TGG - chr7_4:53194671-53194690 Msa1162500:three_prime_UTR 30.0%
AAAAAGGGGTAGGTTAAAAA+GGG + chr7_4:53194985-53195004 None:intergenic 30.0%
AAAAAAGGGGTAGGTTAAAA+AGG + chr7_4:53194986-53195005 None:intergenic 30.0%
AAAGATGGAGAAGAAAAAAG+GGG + chr7_4:53194999-53195018 None:intergenic 30.0%
TGGTAAGGACATTAAGATTA+AGG - chr7_4:53195040-53195059 Msa1162500:CDS 30.0%
! TCTTTTGTTCTGTTATTCTC+CGG - chr7_4:53195097-53195116 Msa1162500:CDS 30.0%
!!! TCCGGGTTTTATTGTATTAT+AGG - chr7_4:53195115-53195134 Msa1162500:CDS 30.0%
! AGGAATCAAATTCTCTGAAA+AGG + chr7_4:53195381-53195400 None:intergenic 30.0%
! TAATACTTGTAGGTGTTTTG+AGG - chr7_4:53195539-53195558 Msa1162500:intron 30.0%
!! ATGTTCTGGTTTAGGATAAT+AGG - chr7_4:53195647-53195666 Msa1162500:intron 30.0%
! GTGTAAGATTTTGTTCCTTT+TGG - chr7_4:53195710-53195729 Msa1162500:intron 30.0%
AATGAAATTGAATGGAAGCA+TGG - chr7_4:53195809-53195828 Msa1162500:intron 30.0%
AGGTTCATTTAGATCAATGA+TGG + chr7_4:53195949-53195968 None:intergenic 30.0%
TCATTGATCTAAATGAACCT+AGG - chr7_4:53195949-53195968 Msa1162500:intron 30.0%
CATTGATCTAAATGAACCTA+GGG - chr7_4:53195950-53195969 Msa1162500:intron 30.0%
AAAATGAAAGCAAAAAGACC+AGG + chr7_4:53196257-53196276 None:intergenic 30.0%
!! ACTAACAAAGCGTATTTTAG+AGG - chr7_4:53196328-53196347 Msa1162500:intron 30.0%
AAGTTTCTGACCATAAGATT+TGG - chr7_4:53196372-53196391 Msa1162500:intron 30.0%
TTCTGTGTTGTGTATATATG+TGG - chr7_4:53196411-53196430 Msa1162500:intron 30.0%
TTTAATCTTATGGCTCATCT+AGG - chr7_4:53196504-53196523 Msa1162500:intron 30.0%
!! TAAAAGGGTGCTTAGATATA+AGG - chr7_4:53196814-53196833 Msa1162500:intron 30.0%
! GACCAACATTATTAGGTTTT+AGG - chr7_4:53196886-53196905 Msa1162500:intron 30.0%
TGCCTAAAACCTAATAATGT+TGG + chr7_4:53196891-53196910 None:intergenic 30.0%
AAACTAAAGGAAAGATCAGT+AGG - chr7_4:53196968-53196987 Msa1162500:intron 30.0%
!!! TATTTTGAGACTGCATTGAT+TGG - chr7_4:53196996-53197015 Msa1162500:intron 30.0%
!!! ATTTTGAGACTGCATTGATT+GGG - chr7_4:53196997-53197016 Msa1162500:intron 30.0%
TTTCCAAGAATTCATGAGTT+TGG + chr7_4:53197035-53197054 None:intergenic 30.0%
AAACTCATGAATTCTTGGAA+AGG - chr7_4:53197034-53197053 Msa1162500:intron 30.0%
GCATAAATTGGTATGAAGTA+TGG - chr7_4:53197194-53197213 Msa1162500:intron 30.0%
!! TCAGAAAGTTGATGAAATCT+GGG + chr7_4:53197299-53197318 None:intergenic 30.0%
AAAAACAGATGAAGAAAGTC+TGG + chr7_4:53197420-53197439 None:intergenic 30.0%
! AGACTTTCTTCATCTGTTTT+TGG - chr7_4:53197419-53197438 Msa1162500:intron 30.0%
GAACAAAAATTGAAAGCAGA+GGG + chr7_4:53197478-53197497 None:intergenic 30.0%
TGAACAAAAATTGAAAGCAG+AGG + chr7_4:53197479-53197498 None:intergenic 30.0%
TCTTCTGTCAAATCAAACAT+GGG - chr7_4:53197821-53197840 Msa1162500:intron 30.0%
! ATTGTTTGGAATTTGATGCA+TGG + chr7_4:53197943-53197962 None:intergenic 30.0%
TCAAATTCCAAACAATTACG+AGG - chr7_4:53197947-53197966 Msa1162500:CDS 30.0%
TAATGCATTTGTTTGCTTTC+AGG - chr7_4:53198086-53198105 Msa1162500:CDS 30.0%
TTTGTTTAAACTGTTAGGCA+AGG - chr7_4:53198194-53198213 Msa1162500:five_prime_UTR 30.0%
TTTCATGAAGTTGTTTGATG+TGG - chr7_4:53198264-53198283 Msa1162500:five_prime_UTR 30.0%
TGAGAGAATAGTATAGGTGA+GGG + chr7_4:53194541-53194560 None:intergenic 35.0%
TGACAGTGAGAGAATAGTAT+AGG + chr7_4:53194547-53194566 None:intergenic 35.0%
TTCTTTGAACCAGAAGAAGA+AGG + chr7_4:53194776-53194795 None:intergenic 35.0%
!! TCTTCTTCTGGTTCAAAGAA+AGG - chr7_4:53194776-53194795 Msa1162500:CDS 35.0%
! TCTCATGTAATGTGTTGGTA+AGG - chr7_4:53195025-53195044 Msa1162500:CDS 35.0%
! CTTTTGTTCTGTTATTCTCC+GGG - chr7_4:53195098-53195117 Msa1162500:CDS 35.0%
TCATGCTATGTTATCCTGTT+TGG - chr7_4:53195165-53195184 Msa1162500:CDS 35.0%
TATAATTGAACCGACCAAAC+AGG + chr7_4:53195182-53195201 None:intergenic 35.0%
GCAAAAAAACAAAGTACAGC+CGG + chr7_4:53195321-53195340 None:intergenic 35.0%
TCTTGTACTTCACTTGTGTT+AGG - chr7_4:53195427-53195446 Msa1162500:CDS 35.0%
TAGACTCCTACATACCTAAA+CGG + chr7_4:53195572-53195591 None:intergenic 35.0%
GGTATGTAGGAGTCTAAAAA+AGG - chr7_4:53195576-53195595 Msa1162500:intron 35.0%
TTGATTTATCTGTTCTGCCA+TGG - chr7_4:53195611-53195630 Msa1162500:intron 35.0%
! TCTGGTTTAGGATAATAGGA+TGG - chr7_4:53195651-53195670 Msa1162500:intron 35.0%
ACATAGTACCAGGAATAAAG+AGG + chr7_4:53195737-53195756 None:intergenic 35.0%
TCTTTATTCCTGGTACTATG+TGG - chr7_4:53195736-53195755 Msa1162500:intron 35.0%
AGGAAGTTCTTGAGCTAATA+AGG - chr7_4:53195768-53195787 Msa1162500:intron 35.0%
CCAACTGTAGAATAATTGCA+CGG - chr7_4:53195843-53195862 Msa1162500:intron 35.0%
AGAATAATTGCACGGATGTA+TGG - chr7_4:53195851-53195870 Msa1162500:intron 35.0%
!! ATTAGTACTATTGGTGTTGC+TGG - chr7_4:53196216-53196235 Msa1162500:intron 35.0%
!! AACAAAGCGTATTTTAGAGG+TGG - chr7_4:53196331-53196350 Msa1162500:intron 35.0%
CAGAAACTTTCCAATGATGA+TGG + chr7_4:53196361-53196380 None:intergenic 35.0%
ACCATAAGATTTGGAGAACA+TGG - chr7_4:53196381-53196400 Msa1162500:intron 35.0%
ACCATGTTCTCCAAATCTTA+TGG + chr7_4:53196385-53196404 None:intergenic 35.0%
CTTAACTTACTACAGATCAG+AGG + chr7_4:53196562-53196581 None:intergenic 35.0%
CTCTGATCTGTAGTAAGTTA+AGG - chr7_4:53196560-53196579 Msa1162500:intron 35.0%
ACCCTTTGCCTCTAATAAAA+GGG - chr7_4:53196799-53196818 Msa1162500:intron 35.0%
! ACCCTTTTATTAGAGGCAAA+GGG + chr7_4:53196803-53196822 None:intergenic 35.0%
! TCTAAGCACCCTTTTATTAG+AGG + chr7_4:53196810-53196829 None:intergenic 35.0%
AGACCAAACTCATGAATTCT+TGG - chr7_4:53197029-53197048 Msa1162500:intron 35.0%
AACTCTCGAATTTCTTCGAT+AGG - chr7_4:53197066-53197085 Msa1162500:intron 35.0%
CATCTCTCTTCAGCATAAAT+TGG - chr7_4:53197182-53197201 Msa1162500:intron 35.0%
!! AAGTTGATGAAATCTGGGAA+AGG + chr7_4:53197294-53197313 None:intergenic 35.0%
!! CTCAGAAAGTTGATGAAATC+TGG + chr7_4:53197300-53197319 None:intergenic 35.0%
CAACTTTCTGAGTTTGATCA+AGG - chr7_4:53197308-53197327 Msa1162500:intron 35.0%
! ATTGTTGTGGTTTGATTTCC+AGG + chr7_4:53197657-53197676 None:intergenic 35.0%
GGAAATCAAACCACAACAAT+CGG - chr7_4:53197657-53197676 Msa1162500:intron 35.0%
TGTAAGAAAAGGTTGTCAGA+TGG + chr7_4:53197711-53197730 None:intergenic 35.0%
! TCTGACAACCTTTTCTTACA+AGG - chr7_4:53197711-53197730 Msa1162500:intron 35.0%
! CAACCTTTTCTTACAAGGTT+CGG - chr7_4:53197716-53197735 Msa1162500:intron 35.0%
CTCTTCTGTCAAATCAAACA+TGG - chr7_4:53197820-53197839 Msa1162500:intron 35.0%
CTTCTGTCAAATCAAACATG+GGG - chr7_4:53197822-53197841 Msa1162500:intron 35.0%
ATGTTATTCAATCCAGGACT+TGG + chr7_4:53197864-53197883 None:intergenic 35.0%
TTCAGCATGTTATTCAATCC+AGG + chr7_4:53197870-53197889 None:intergenic 35.0%
ATATGGATGTAGAACATTCC+AGG - chr7_4:53198036-53198055 Msa1162500:CDS 35.0%
TATGGATGTAGAACATTCCA+GGG - chr7_4:53198037-53198056 Msa1162500:CDS 35.0%
TGACCATTGAGAAGATTCAT+AGG + chr7_4:53198063-53198082 None:intergenic 35.0%
! CTTGATGCTTTTGCTTGTTT+TGG - chr7_4:53198171-53198190 Msa1162500:CDS 35.0%
TTTAAACTGTTAGGCAAGGT+GGG - chr7_4:53198198-53198217 Msa1162500:five_prime_UTR 35.0%
! CACTCTGTGGTTTTTAATCA+TGG - chr7_4:53198234-53198253 Msa1162500:five_prime_UTR 35.0%
GAAGTTGTTTGATGTGGATT+TGG - chr7_4:53198270-53198289 Msa1162500:five_prime_UTR 35.0%
ACTACTGCAACATTCATTTG+CGG + chr7_4:53198327-53198346 None:intergenic 35.0%
GAATGTTGCAGTAGTATATG+CGG - chr7_4:53198332-53198351 Msa1162500:five_prime_UTR 35.0%
AGTGAAGTGGAAGACAAAAG+AGG + chr7_4:53194440-53194459 None:intergenic 40.0%
AGAGAATAGTATAGGTGAGG+GGG + chr7_4:53194539-53194558 None:intergenic 40.0%
GAGAGAATAGTATAGGTGAG+GGG + chr7_4:53194540-53194559 None:intergenic 40.0%
GTGAGAGAATAGTATAGGTG+AGG + chr7_4:53194542-53194561 None:intergenic 40.0%
CATTGGTGTGTAAGGTTTGA+TGG + chr7_4:53194618-53194637 None:intergenic 40.0%
CATCAAACCTTACACACCAA+TGG - chr7_4:53194616-53194635 Msa1162500:three_prime_UTR 40.0%
TCAGAAGAGTCCTCTCTTAA+TGG - chr7_4:53194659-53194678 Msa1162500:three_prime_UTR 40.0%
! TCTGGTTCAAAGAAAGGAAG+AGG - chr7_4:53194782-53194801 Msa1162500:CDS 40.0%
GTTCAAAGAAAGGAAGAGGT+GGG - chr7_4:53194786-53194805 Msa1162500:CDS 40.0%
TTCAACATTCTCAACCACCT+AGG - chr7_4:53194813-53194832 Msa1162500:CDS 40.0%
!! GGTTTTGTCAACAATGTAGC+AGG - chr7_4:53194954-53194973 Msa1162500:CDS 40.0%
ATGGAGAAGAAAAAAGGGGT+AGG + chr7_4:53194995-53195014 None:intergenic 40.0%
GCTATGTTATCCTGTTTGGT+CGG - chr7_4:53195169-53195188 Msa1162500:CDS 40.0%
AGACTCCTACATACCTAAAC+GGG + chr7_4:53195571-53195590 None:intergenic 40.0%
AGGATAATAGGATGGTGATC+AGG - chr7_4:53195659-53195678 Msa1162500:intron 40.0%
GGATAATAGGATGGTGATCA+GGG - chr7_4:53195660-53195679 Msa1162500:intron 40.0%
CAGGAATAAAGAGGACCAAA+AGG + chr7_4:53195728-53195747 None:intergenic 40.0%
! CTTTTGGTCCTCTTTATTCC+TGG - chr7_4:53195726-53195745 Msa1162500:intron 40.0%
GTACTATGTGGCACTTGTAA+AGG - chr7_4:53195748-53195767 Msa1162500:intron 40.0%
! ATTGAATGGAAGCATGGATC+AGG - chr7_4:53195815-53195834 Msa1162500:intron 40.0%
CCGTGCAATTATTCTACAGT+TGG + chr7_4:53195846-53195865 None:intergenic 40.0%
AATGCAGACTTAAGAACCCT+AGG + chr7_4:53195969-53195988 None:intergenic 40.0%
! TGGTAATGAGAGTTTGAGAG+TGG - chr7_4:53196010-53196029 Msa1162500:intron 40.0%
TCATGCTATCGTGTGATCAT+AGG - chr7_4:53196041-53196060 Msa1162500:intron 40.0%
GAAAGCAAAAAGACCAGGAT+TGG + chr7_4:53196252-53196271 None:intergenic 40.0%
GTGTAGCTGAAATAGCTTTC+TGG - chr7_4:53196453-53196472 Msa1162500:intron 40.0%
! TCTTATGGCTCATCTAGGAT+TGG - chr7_4:53196509-53196528 Msa1162500:intron 40.0%
AACTTACTACAGATCAGAGG+TGG + chr7_4:53196559-53196578 None:intergenic 40.0%
!! GCAAAGGGTGCTTACATATA+GGG + chr7_4:53196788-53196807 None:intergenic 40.0%
CACCCTTTGCCTCTAATAAA+AGG - chr7_4:53196798-53196817 Msa1162500:intron 40.0%
! CACCCTTTTATTAGAGGCAA+AGG + chr7_4:53196804-53196823 None:intergenic 40.0%
! AGGGTGCTTAGATATAAGGA+CGG - chr7_4:53196818-53196837 Msa1162500:intron 40.0%
TGCTTAGATATAAGGACGGA+GGG - chr7_4:53196822-53196841 Msa1162500:intron 40.0%
GCTGCAGTTGCTATGTTATT+AGG - chr7_4:53196859-53196878 Msa1162500:intron 40.0%
AGGCAACGACCAACATTATT+AGG - chr7_4:53196879-53196898 Msa1162500:intron 40.0%
!! AGACTGCATTGATTGGGATT+CGG - chr7_4:53197003-53197022 Msa1162500:intron 40.0%
TCGAAGAAATTCGAGAGTTG+TGG + chr7_4:53197065-53197084 None:intergenic 40.0%
TTTGCTTCAAACCCGAAACA+TGG - chr7_4:53197609-53197628 Msa1162500:intron 40.0%
AGTTTCTCAGACCATGTTTC+GGG + chr7_4:53197623-53197642 None:intergenic 40.0%
GAGTTTCTCAGACCATGTTT+CGG + chr7_4:53197624-53197643 None:intergenic 40.0%
ATCAAACCACAACAATCGGT+TGG - chr7_4:53197661-53197680 Msa1162500:intron 40.0%
!! CTTTTCTTACAAGGTTCGGT+GGG - chr7_4:53197720-53197739 Msa1162500:intron 40.0%
AGATGTAGCATGTTGTGTCA+TGG + chr7_4:53197907-53197926 None:intergenic 40.0%
CAACATGCTACATCTTCTCA+TGG - chr7_4:53197912-53197931 Msa1162500:CDS 40.0%
AGAGTTGACTACCAAGATCA+GGG + chr7_4:53197977-53197996 None:intergenic 40.0%
GTTTAAACTGTTAGGCAAGG+TGG - chr7_4:53198197-53198216 Msa1162500:five_prime_UTR 40.0%
TTAAACTGTTAGGCAAGGTG+GGG - chr7_4:53198199-53198218 Msa1162500:five_prime_UTR 40.0%
AAAAACCACAGAGTGAAGCA+AGG + chr7_4:53198229-53198248 None:intergenic 40.0%
ACAAAAGAGGAAGAGGTGGA+AGG + chr7_4:53194427-53194446 None:intergenic 45.0%
GAAGACAAAAGAGGAAGAGG+TGG + chr7_4:53194431-53194450 None:intergenic 45.0%
GTGGAAGACAAAAGAGGAAG+AGG + chr7_4:53194434-53194453 None:intergenic 45.0%
GAGAATAGTATAGGTGAGGG+GGG + chr7_4:53194538-53194557 None:intergenic 45.0%
GGTTGCTAGATTGTGCTCAT+TGG + chr7_4:53194594-53194613 None:intergenic 45.0%
TGGTGTGTAAGGTTTGATGG+TGG + chr7_4:53194615-53194634 None:intergenic 45.0%
CCTGAATCCATTGGTGTGTA+AGG + chr7_4:53194626-53194645 None:intergenic 45.0%
! CCTTACACACCAATGGATTC+AGG - chr7_4:53194623-53194642 Msa1162500:three_prime_UTR 45.0%
! TACACACCAATGGATTCAGG+AGG - chr7_4:53194626-53194645 Msa1162500:three_prime_UTR 45.0%
GGTTCAAAGAAAGGAAGAGG+TGG - chr7_4:53194785-53194804 Msa1162500:CDS 45.0%
CATCCTTCAACTTGACACCT+AGG + chr7_4:53194833-53194852 None:intergenic 45.0%
TCACCTGCTGTTACTGTTTC+TGG - chr7_4:53194920-53194939 Msa1162500:CDS 45.0%
AGACCAGAAACAGTAACAGC+AGG + chr7_4:53194926-53194945 None:intergenic 45.0%
!! CTGTTTCTGGTCTTCAACAG+AGG - chr7_4:53194933-53194952 Msa1162500:CDS 45.0%
GATTTGGGTCGATTGTGTTC+CGG - chr7_4:53195299-53195318 Msa1162500:intron 45.0%
!!! ACTTGTAGGTGTTTTGAGGC+TGG - chr7_4:53195543-53195562 Msa1162500:intron 45.0%
GACTCCTACATACCTAAACG+GGG + chr7_4:53195570-53195589 None:intergenic 45.0%
TACAAGTGCCACATAGTACC+AGG + chr7_4:53195747-53195766 None:intergenic 45.0%
TGGATAGTGCAATCCAATCC+TGG - chr7_4:53196236-53196255 Msa1162500:intron 45.0%
AGGTGGATCACCATCATCAT+TGG - chr7_4:53196348-53196367 Msa1162500:intron 45.0%
TGCTTACATATAGGGACGGA+GGG + chr7_4:53196780-53196799 None:intergenic 45.0%
! AGGGTGCTTACATATAGGGA+CGG + chr7_4:53196784-53196803 None:intergenic 45.0%
!! GGCAAAGGGTGCTTACATAT+AGG + chr7_4:53196789-53196808 None:intergenic 45.0%
GTGCTTAGATATAAGGACGG+AGG - chr7_4:53196821-53196840 Msa1162500:intron 45.0%
!! ACGGAGGGAGTACTAATGTT+AGG - chr7_4:53196837-53196856 Msa1162500:intron 45.0%
! TAGGCAGCCGTTGTGTTATT+AGG - chr7_4:53196905-53196924 Msa1162500:intron 45.0%
!! GACTGCATTGATTGGGATTC+GGG - chr7_4:53197004-53197023 Msa1162500:intron 45.0%
AGGATAAGAGAGAGCTTGGT+GGG + chr7_4:53197388-53197407 None:intergenic 45.0%
AGAAACTCACTTCCATCACC+TGG - chr7_4:53197636-53197655 Msa1162500:intron 45.0%
! GTGGTTTGATTTCCAGGTGA+TGG + chr7_4:53197651-53197670 None:intergenic 45.0%
CCACCGAACCTTGTAAGAAA+AGG + chr7_4:53197722-53197741 None:intergenic 45.0%
! CCTTTTCTTACAAGGTTCGG+TGG - chr7_4:53197719-53197738 Msa1162500:intron 45.0%
ACTCCAGTGTAAGTTTCCTC+GGG + chr7_4:53197777-53197796 None:intergenic 45.0%
GACTCCAGTGTAAGTTTCCT+CGG + chr7_4:53197778-53197797 None:intergenic 45.0%
GGGACAACCTCGTAATTGTT+TGG + chr7_4:53197957-53197976 None:intergenic 45.0%
GAGAGTTGACTACCAAGATC+AGG + chr7_4:53197978-53197997 None:intergenic 45.0%
! GATCTTGGTAGTCAACTCTC+TGG - chr7_4:53197978-53197997 Msa1162500:CDS 45.0%
TTGAGAAGATTCATAGGCCC+TGG + chr7_4:53198057-53198076 None:intergenic 45.0%
GGGCCTATGAATCTTCTCAA+TGG - chr7_4:53198057-53198076 Msa1162500:CDS 45.0%
! GGAGTGGTGGTTGTTGTTGT+TGG + chr7_4:53194510-53194529 None:intergenic 50.0%
GAGTTGCCTCCTGAATCCAT+TGG + chr7_4:53194635-53194654 None:intergenic 50.0%
ACTACCACTACCATTGCTGC+TGG - chr7_4:53194746-53194765 Msa1162500:CDS 50.0%
AGAACCAGCAGCAATGGTAG+TGG + chr7_4:53194753-53194772 None:intergenic 50.0%
AGAAGGAGAACCAGCAGCAA+TGG + chr7_4:53194759-53194778 None:intergenic 50.0%
! GCTGGTTCTCCTTCTTCTTC+TGG - chr7_4:53194764-53194783 Msa1162500:CDS 50.0%
CCTTCAACTTGACACCTAGG+TGG + chr7_4:53194830-53194849 None:intergenic 50.0%
!! CCACCTAGGTGTCAAGTTGA+AGG - chr7_4:53194827-53194846 Msa1162500:CDS 50.0%
TGGTCCCCGTTTAGGTATGT+AGG - chr7_4:53195563-53195582 Msa1162500:intron 50.0%
GTGCTTACATATAGGGACGG+AGG + chr7_4:53196781-53196800 None:intergenic 50.0%
! CAGCCGTTGTGTTATTAGGC+AGG - chr7_4:53196909-53196928 Msa1162500:intron 50.0%
CCGCCTGCCTAATAACACAA+CGG + chr7_4:53196915-53196934 None:intergenic 50.0%
! CCGTTGTGTTATTAGGCAGG+CGG - chr7_4:53196912-53196931 Msa1162500:intron 50.0%
TATGACCAGCTAGTCGTCTG+CGG + chr7_4:53197346-53197365 None:intergenic 50.0%
! GATAAGAGAGAGCTTGGTGG+GGG + chr7_4:53197386-53197405 None:intergenic 50.0%
! GGATAAGAGAGAGCTTGGTG+GGG + chr7_4:53197387-53197406 None:intergenic 50.0%
GAGGATAAGAGAGAGCTTGG+TGG + chr7_4:53197389-53197408 None:intergenic 50.0%
CGTGAGGATAAGAGAGAGCT+TGG + chr7_4:53197392-53197411 None:intergenic 50.0%
AGAAAGTCTGGCAAAGCGTG+AGG + chr7_4:53197408-53197427 None:intergenic 50.0%
TCAACAGGTAACAGCGACAG+AGG - chr7_4:53197567-53197586 Msa1162500:intron 50.0%
!! TTCTTACAAGGTTCGGTGGG+TGG - chr7_4:53197723-53197742 Msa1162500:intron 50.0%
!! TCTTACAAGGTTCGGTGGGT+GGG - chr7_4:53197724-53197743 Msa1162500:intron 50.0%
CGTAACACAGAACCAAGTCC+TGG - chr7_4:53197849-53197868 Msa1162500:intron 50.0%
TACGAGGTTGTCCCTGATCT+TGG - chr7_4:53197963-53197982 Msa1162500:CDS 50.0%
TGAGCTTGATCTGTCACAGC+AGG - chr7_4:53198001-53198020 Msa1162500:CDS 50.0%
GAGCTTGATCTGTCACAGCA+GGG - chr7_4:53198002-53198021 Msa1162500:CDS 50.0%
TTGATCTGTCACAGCAGGGA+AGG - chr7_4:53198006-53198025 Msa1162500:CDS 50.0%
!! GCAGGGAAGGAGGCATTATA+TGG - chr7_4:53198019-53198038 Msa1162500:CDS 50.0%
AGTATAGGTGAGGGGGGTCT+GGG + chr7_4:53194532-53194551 None:intergenic 55.0%
TAGTATAGGTGAGGGGGGTC+TGG + chr7_4:53194533-53194552 None:intergenic 55.0%
! TTTGAGGCTGGTCCCCGTTT+AGG - chr7_4:53195555-53195574 Msa1162500:intron 55.0%
ACAGGTAACAGCGACAGAGG+TGG - chr7_4:53197570-53197589 Msa1162500:intron 55.0%
CAGAGGTGGCAGCTTCTCAA+TGG - chr7_4:53197584-53197603 Msa1162500:intron 55.0%
CCAAGGCCAACCGATTGTTG+TGG + chr7_4:53197670-53197689 None:intergenic 55.0%
!! CCACAACAATCGGTTGGCCT+TGG - chr7_4:53197667-53197686 Msa1162500:intron 55.0%
!! AACAATCGGTTGGCCTTGGC+CGG - chr7_4:53197671-53197690 Msa1162500:intron 55.0%
CCAGTGTAAGTTTCCTCGGG+AGG + chr7_4:53197774-53197793 None:intergenic 55.0%
CCTCCCGAGGAAACTTACAC+TGG - chr7_4:53197771-53197790 Msa1162500:intron 55.0%
ATCTGTCACAGCAGGGAAGG+AGG - chr7_4:53198009-53198028 Msa1162500:CDS 55.0%
!! GCTAGCCTTGCTTCACTCTG+TGG - chr7_4:53198221-53198240 Msa1162500:five_prime_UTR 55.0%
GTATAGGTGAGGGGGGTCTG+GGG + chr7_4:53194531-53194550 None:intergenic 60.0%
AGTTGCCGCAGACGACTAGC+TGG - chr7_4:53197338-53197357 Msa1162500:intron 60.0%
! CTGGTCATAACGAGCGTCGC+AGG - chr7_4:53197357-53197376 Msa1162500:intron 60.0%
!! ACAATCGGTTGGCCTTGGCC+GGG - chr7_4:53197672-53197691 Msa1162500:intron 60.0%
AGTTTCCTCGGGAGGATGCC+TGG + chr7_4:53197766-53197785 None:intergenic 60.0%
!! CAATCGGTTGGCCTTGGCCG+GGG - chr7_4:53197673-53197692 Msa1162500:intron 65.0%
!! TTGGCCTTGGCCGGGGAACA+CGG - chr7_4:53197680-53197699 Msa1162500:intron 65.0%
GATGGCGACTCCGTGTTCCC+CGG + chr7_4:53197693-53197712 None:intergenic 65.0%
GTGGGTGGGACAAGCTTCCC+TGG - chr7_4:53197738-53197757 Msa1162500:intron 65.0%
GGACAAGCTTCCCTGGTGCC+AGG - chr7_4:53197745-53197764 Msa1162500:intron 65.0%
GACTCCGTGTTCCCCGGCCA+AGG + chr7_4:53197687-53197706 None:intergenic 70.0%
CGGGAGGATGCCTGGCACCA+GGG + chr7_4:53197758-53197777 None:intergenic 70.0%
TCGGGAGGATGCCTGGCACC+AGG + chr7_4:53197759-53197778 None:intergenic 70.0%
! TGGTGCCAGGCATCCTCCCG+AGG - chr7_4:53197758-53197777 Msa1162500:intron 70.0%
GAGGGGGGTCTGGGGAGTGG+TGG + chr7_4:53194523-53194542 None:intergenic 75.0%
GGTGAGGGGGGTCTGGGGAG+TGG + chr7_4:53194526-53194545 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr7_4 gene 53194407 53198418 53194407 ID=Msa1162500;Name=Msa1162500
chr7_4 mRNA 53194407 53198418 53194407 ID=Msa1162500-mRNA-1;Parent=Msa1162500;Name=Msa1162500-mRNA-1;_AED=0.05;_eAED=0.05;_QI=228|1|1|1|1|1|3|330|331
chr7_4 exon 53194407 53195251 53194407 ID=Msa1162500-mRNA-1:exon:15351;Parent=Msa1162500-mRNA-1
chr7_4 exon 53195385 53195524 53195385 ID=Msa1162500-mRNA-1:exon:15350;Parent=Msa1162500-mRNA-1
chr7_4 exon 53197850 53198418 53197850 ID=Msa1162500-mRNA-1:exon:15349;Parent=Msa1162500-mRNA-1
chr7_4 five_prime_UTR 53198191 53198418 53198191 ID=Msa1162500-mRNA-1:five_prime_utr;Parent=Msa1162500-mRNA-1
chr7_4 CDS 53197850 53198190 53197850 ID=Msa1162500-mRNA-1:cds;Parent=Msa1162500-mRNA-1
chr7_4 CDS 53195385 53195524 53195385 ID=Msa1162500-mRNA-1:cds;Parent=Msa1162500-mRNA-1
chr7_4 CDS 53194737 53195251 53194737 ID=Msa1162500-mRNA-1:cds;Parent=Msa1162500-mRNA-1
chr7_4 three_prime_UTR 53194407 53194736 53194407 ID=Msa1162500-mRNA-1:three_prime_utr;Parent=Msa1162500-mRNA-1
Gene Sequence

>Msa1162500

ATGGATTCAGGAGGCAACTCTTCTTCAGAAGAGTCCTCTCTTAATGGCTTGAAATTTGGCCAACGAATCTATTTTGAAGATACAGCTCTTGCTGCTACTACTACTACGACTACTACCACTACCATTGCTGCTGGTTCTCCTTCTTCTTCTGGTTCAAAGAAAGGAAGAGGTGGGTCAGTTCAACATTCTCAACCACCTAGGTGTCAAGTTGAAGGATGTAAACTAGATCTGACTGATGCTAAAGCTTACTATTCTAGACACAAAGTTTGTAGCATGCACTCTAAATCACCTGCTGTTACTGTTTCTGGTCTTCAACAGAGGTTTTGTCAACAATGTAGCAGATTTCATCAACTTTCTGAGTTTGATCAAGGAAAAAGAAGTTGCCGCAGACGACTAGCTGGTCATAACGAGCGTCGCAGGAAGCCCCCACCAAGCTCTCTCTTATCCTCACGCTTTGCCAGACTTTCTTCATCTGTTTTTGGTAACAGCGACAGAGGTGGCAGCTTCTCAATGGAATTTGCTTCAAACCCGAAACATGGTCTGAGAAACTCACTTCCATCACCTGGAAATCAAACCACAACAATCGGTTGGCCTTGGCCGGGGAACACGGAGTCGCCATCTGACAACCTTTTCTTACAAGGTTCGGTGGGTGGGACAAGCTTCCCTGGTGCCAGGCATCCTCCCGAGGAAACTTACACTGGAGTCACAGATTCAAACTGTGCTCTCTCTCTTCTGTCAAATCAAACATGGGGTTCTCGTAACACAGAACCAAGTCCTGGATTGAATAACATGCTGAATTTCAATGGGACATCCATGACACAACATGCTACATCTTCTCATGGTGTAGCCATGCATCAAATTCCAAACAATTACGAGGTTGTCCCTGATCTTGGTAGTCAACTCTCTGGTGAGCTTGATCTGTCACAGCAGGGAAGGAGGCATTATATGGATGTAGAACATTCCAGGGCCTATGAATCTTCTCAATGGTCACTGTAA
Protein sequence

>Msa1162500

MDSGGNSSSEESSLNGLKFGQRIYFEDTALAATTTTTTTTTIAAGSPSSSGSKKGRGGSVQHSQPPRCQVEGCKLDLTDAKAYYSRHKVCSMHSKSPAVTVSGLQQRFCQQCSRFHQLSEFDQGKRSCRRRLAGHNERRRKPPPSSLLSSRFARLSSSVFGNSDRGGSFSMEFASNPKHGLRNSLPSPGNQTTTIGWPWPGNTESPSDNLFLQGSVGGTSFPGARHPPEETYTGVTDSNCALSLLSNQTWGSRNTEPSPGLNNMLNFNGTSMTQHATSSHGVAMHQIPNNYEVVPDLGSQLSGELDLSQQGRRHYMDVEHSRAYESSQWSL*