Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1116280 | XP_003625261.1 | 91.000 | 100 | 6 | 2 | 22 | 118 | 23 | 122 | 1.44e-51 | 170 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1116280 | G7KVD7 | 91.000 | 100 | 6 | 2 | 22 | 118 | 23 | 122 | 6.88e-52 | 170 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0703600 | Msa1116280 | 0.807045 | 6.121671e-50 | -8.615850e-47 |
| Msa0709200 | Msa1116280 | 0.806425 | 8.279134e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1116280 | MtrunA17_Chr7g0258701 | 91.000 | 100 | 6 | 2 | 22 | 118 | 23 | 122 | 1.32e-55 | 170 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 36 sgRNAs with CRISPR-Local
Find 200 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTGGTTCCAGTGGTGTGTT+GGG | 0.311171 | 7_3:+63893756 | Msa1116280:intron |
| TAGGAATCAAAATGTTAATC+AGG | 0.317258 | 7_3:-63892522 | None:intergenic |
| GAGGATGGATGGACCGTTAT+AGG | 0.322706 | 7_3:-63892541 | None:intergenic |
| AAAATGTTAATATGATTTGA+TGG | 0.331087 | 7_3:-63892570 | None:intergenic |
| AGTCAGTGCTCCGGCAGCTC+AGG | 0.334794 | 7_3:+63892888 | Msa1116280:CDS |
| TGCTGGTTCCAGTGGTGTGT+TGG | 0.358101 | 7_3:+63893755 | Msa1116280:intron |
| GACTTCCGGCTCACTGTTGC+CGG | 0.373087 | 7_3:-63892869 | None:intergenic |
| GCTGCCGGAGCACTGACTTC+CGG | 0.414941 | 7_3:-63892883 | None:intergenic |
| CAGAAACAAGTCATCACTCT+TGG | 0.430413 | 7_3:+63892922 | Msa1116280:CDS |
| ACTAAGGAAATTTGCTGAAG+TGG | 0.437150 | 7_3:+63892730 | Msa1116280:CDS |
| TTGGGGTCTCACCTTGTGAA+TGG | 0.442298 | 7_3:-63892948 | None:intergenic |
| TTCTGTTACTACTGATGCTA+CGG | 0.445795 | 7_3:+63892673 | Msa1116280:CDS |
| GAGCTCAGGTTGCTCCTGTC+CGG | 0.495878 | 7_3:+63893783 | Msa1116280:CDS |
| ACCACCCTGAAAAGCCGGAC+AGG | 0.496455 | 7_3:-63893797 | None:intergenic |
| AATCTTCTGATGAACTACTA+AGG | 0.502531 | 7_3:+63892714 | Msa1116280:CDS |
| AAACGGCACCACTGCCGTTG+TGG | 0.512072 | 7_3:+63892829 | Msa1116280:CDS |
| CTGGTTCCAGTGGTGTGTTG+GGG | 0.516431 | 7_3:+63893757 | Msa1116280:intron |
| AGAAACAAGTCATCACTCTT+GGG | 0.516768 | 7_3:+63892923 | Msa1116280:CDS |
| GCAAAACCACCCTGAAAAGC+CGG | 0.519978 | 7_3:-63893802 | None:intergenic |
| AGTAACAGAAGAAGCGGAGG+TGG | 0.521329 | 7_3:-63892660 | None:intergenic |
| TATCTCTAACCCTGAGCTGC+CGG | 0.524168 | 7_3:-63892898 | None:intergenic |
| CCTCCTTTCCACAACGGCAG+TGG | 0.532545 | 7_3:-63892837 | None:intergenic |
| CAATCTGAGAGCTCTTCAAA+CGG | 0.537248 | 7_3:+63892812 | Msa1116280:CDS |
| TGGTTCCAGTGGTGTGTTGG+GGG | 0.542181 | 7_3:+63893758 | Msa1116280:intron |
| GCACCACTGCCGTTGTGGAA+AGG | 0.550600 | 7_3:+63892834 | Msa1116280:CDS |
| ATCAGTAGTAACAGAAGAAG+CGG | 0.551185 | 7_3:-63892666 | None:intergenic |
| TGAGCCGGAAGTCAGTGCTC+CGG | 0.557573 | 7_3:+63892879 | Msa1116280:CDS |
| AGGAATCAAAATGTTAATCA+GGG | 0.560917 | 7_3:-63892521 | None:intergenic |
| AGAAGCGGAGGTGGTTGTTG+TGG | 0.561747 | 7_3:-63892651 | None:intergenic |
| CTAAGGAAATTTGCTGAAGT+GGG | 0.582088 | 7_3:+63892731 | Msa1116280:CDS |
| GTCAGTGCTCCGGCAGCTCA+GGG | 0.601711 | 7_3:+63892889 | Msa1116280:CDS |
| CCACTGCCGTTGTGGAAAGG+AGG | 0.606383 | 7_3:+63892837 | Msa1116280:CDS |
| AGTAGTAACAGAAGAAGCGG+AGG | 0.626258 | 7_3:-63892663 | None:intergenic |
| ACATTCCAACAGCCCACACA+TGG | 0.650508 | 7_3:-63893824 | None:intergenic |
| ACTCTTGGGAACCATTCACA+AGG | 0.711090 | 7_3:+63892937 | Msa1116280:CDS |
| AAGCGACCTCCTTTCCACAA+CGG | 0.711834 | 7_3:-63892843 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATGTTAATATGATTTGA+TGG | - | chr7_3:63892573-63892592 | None:intergenic | 15.0% |
| !! | GGTAATTTAGATTTATTTAA+CGG | - | chr7_3:63893022-63893041 | None:intergenic | 15.0% |
| !! | AAAATGTTAATATGATTTGA+TGG | - | chr7_3:63892573-63892592 | None:intergenic | 15.0% |
| !! | GGTAATTTAGATTTATTTAA+CGG | - | chr7_3:63893022-63893041 | None:intergenic | 15.0% |
| !!! | TAACATTTTGATTCCTATAA+CGG | + | chr7_3:63892528-63892547 | Msa1116280:five_prime_UTR | 20.0% |
| !! | TTTGATCAATGATATTGTTT+AGG | + | chr7_3:63893202-63893221 | Msa1116280:intron | 20.0% |
| !! | CAATAGTTCAATATACATAA+AGG | - | chr7_3:63893295-63893314 | None:intergenic | 20.0% |
| !! | CTTTATGTATATTGAACTAT+TGG | + | chr7_3:63893293-63893312 | Msa1116280:intron | 20.0% |
| !!! | GATCACTTAATTTTTTTTCT+TGG | + | chr7_3:63893604-63893623 | Msa1116280:intron | 20.0% |
| !!! | ACTTAATTTTTTTTCTTGGA+AGG | + | chr7_3:63893608-63893627 | Msa1116280:intron | 20.0% |
| !!! | CTTAATTTTTTTTCTTGGAA+GGG | + | chr7_3:63893609-63893628 | Msa1116280:intron | 20.0% |
| !!! | TAACATTTTGATTCCTATAA+CGG | + | chr7_3:63892528-63892547 | Msa1116280:five_prime_UTR | 20.0% |
| !! | TTTGATCAATGATATTGTTT+AGG | + | chr7_3:63893202-63893221 | Msa1116280:intron | 20.0% |
| !! | CAATAGTTCAATATACATAA+AGG | - | chr7_3:63893295-63893314 | None:intergenic | 20.0% |
| !! | CTTTATGTATATTGAACTAT+TGG | + | chr7_3:63893293-63893312 | Msa1116280:intron | 20.0% |
| !!! | GATCACTTAATTTTTTTTCT+TGG | + | chr7_3:63893604-63893623 | Msa1116280:intron | 20.0% |
| !!! | ACTTAATTTTTTTTCTTGGA+AGG | + | chr7_3:63893608-63893627 | Msa1116280:intron | 20.0% |
| !!! | CTTAATTTTTTTTCTTGGAA+GGG | + | chr7_3:63893609-63893628 | Msa1116280:intron | 20.0% |
| ! | AGGAATCAAAATGTTAATCA+GGG | - | chr7_3:63892524-63892543 | None:intergenic | 25.0% |
| ! | TAGGAATCAAAATGTTAATC+AGG | - | chr7_3:63892525-63892544 | None:intergenic | 25.0% |
| !!! | TATGATTTGATGGTTTTATG+AGG | - | chr7_3:63892563-63892582 | None:intergenic | 25.0% |
| !!! | ACCAAGAAAAAGTGTTAATT+GGG | - | chr7_3:63892969-63892988 | None:intergenic | 25.0% |
| ! | AGTTCAATATACATAAAGGT+GGG | - | chr7_3:63893291-63893310 | None:intergenic | 25.0% |
| ! | TAGTTCAATATACATAAAGG+TGG | - | chr7_3:63893292-63893311 | None:intergenic | 25.0% |
| !! | ATCATTTGAGTTCAATCATT+TGG | - | chr7_3:63893540-63893559 | None:intergenic | 25.0% |
| ! | AAAAAAAATTAAGTGATCCC+CGG | - | chr7_3:63893602-63893621 | None:intergenic | 25.0% |
| ! | TACAGTATATCTAAGTGTTT+GGG | + | chr7_3:63893649-63893668 | Msa1116280:intron | 25.0% |
| ! | AGGAATCAAAATGTTAATCA+GGG | - | chr7_3:63892524-63892543 | None:intergenic | 25.0% |
| ! | TAGGAATCAAAATGTTAATC+AGG | - | chr7_3:63892525-63892544 | None:intergenic | 25.0% |
| !!! | TATGATTTGATGGTTTTATG+AGG | - | chr7_3:63892563-63892582 | None:intergenic | 25.0% |
| !!! | ACCAAGAAAAAGTGTTAATT+GGG | - | chr7_3:63892969-63892988 | None:intergenic | 25.0% |
| ! | AGTTCAATATACATAAAGGT+GGG | - | chr7_3:63893291-63893310 | None:intergenic | 25.0% |
| ! | TAGTTCAATATACATAAAGG+TGG | - | chr7_3:63893292-63893311 | None:intergenic | 25.0% |
| !! | ATCATTTGAGTTCAATCATT+TGG | - | chr7_3:63893540-63893559 | None:intergenic | 25.0% |
| ! | AAAAAAAATTAAGTGATCCC+CGG | - | chr7_3:63893602-63893621 | None:intergenic | 25.0% |
| ! | TACAGTATATCTAAGTGTTT+GGG | + | chr7_3:63893649-63893668 | Msa1116280:intron | 25.0% |
| !!! | ATTTGATGGTTTTATGAGGA+TGG | - | chr7_3:63892559-63892578 | None:intergenic | 30.0% |
| ! | TTTTCTTACTCTCTTTGCAA+TGG | + | chr7_3:63892613-63892632 | Msa1116280:exon | 30.0% |
| AATCTTCTGATGAACTACTA+AGG | + | chr7_3:63892714-63892733 | Msa1116280:CDS | 30.0% | |
| ! | GATTTTCCTTCATCTTTTTG+CGG | - | chr7_3:63892793-63892812 | None:intergenic | 30.0% |
| !! | CCAAGAAAAAGTGTTAATTG+GGG | - | chr7_3:63892968-63892987 | None:intergenic | 30.0% |
| !! | GACCAAGAAAAAGTGTTAAT+TGG | - | chr7_3:63892970-63892989 | None:intergenic | 30.0% |
| TTGTATAGATTAATTCGTCG+AGG | - | chr7_3:63893043-63893062 | None:intergenic | 30.0% | |
| GTACAGTATATCTAAGTGTT+TGG | + | chr7_3:63893648-63893667 | Msa1116280:intron | 30.0% | |
| !!! | ACGAGTATTTTTGGTAGTTT+AGG | + | chr7_3:63893689-63893708 | Msa1116280:intron | 30.0% |
| !!! | CGAGTATTTTTGGTAGTTTA+GGG | + | chr7_3:63893690-63893709 | Msa1116280:intron | 30.0% |
| !!! | ATTTGATGGTTTTATGAGGA+TGG | - | chr7_3:63892559-63892578 | None:intergenic | 30.0% |
| ! | TTTTCTTACTCTCTTTGCAA+TGG | + | chr7_3:63892613-63892632 | Msa1116280:exon | 30.0% |
| AATCTTCTGATGAACTACTA+AGG | + | chr7_3:63892714-63892733 | Msa1116280:CDS | 30.0% | |
| ! | GATTTTCCTTCATCTTTTTG+CGG | - | chr7_3:63892793-63892812 | None:intergenic | 30.0% |
| !! | CCAAGAAAAAGTGTTAATTG+GGG | - | chr7_3:63892968-63892987 | None:intergenic | 30.0% |
| !! | GACCAAGAAAAAGTGTTAAT+TGG | - | chr7_3:63892970-63892989 | None:intergenic | 30.0% |
| TTGTATAGATTAATTCGTCG+AGG | - | chr7_3:63893043-63893062 | None:intergenic | 30.0% | |
| GTACAGTATATCTAAGTGTT+TGG | + | chr7_3:63893648-63893667 | Msa1116280:intron | 30.0% | |
| !!! | ACGAGTATTTTTGGTAGTTT+AGG | + | chr7_3:63893689-63893708 | Msa1116280:intron | 30.0% |
| !!! | CGAGTATTTTTGGTAGTTTA+GGG | + | chr7_3:63893690-63893709 | Msa1116280:intron | 30.0% |
| ATCAGTAGTAACAGAAGAAG+CGG | - | chr7_3:63892669-63892688 | None:intergenic | 35.0% | |
| TTCTGTTACTACTGATGCTA+CGG | + | chr7_3:63892673-63892692 | Msa1116280:CDS | 35.0% | |
| !! | ACTAAGGAAATTTGCTGAAG+TGG | + | chr7_3:63892730-63892749 | Msa1116280:CDS | 35.0% |
| !! | CTAAGGAAATTTGCTGAAGT+GGG | + | chr7_3:63892731-63892750 | Msa1116280:CDS | 35.0% |
| !!! | ACGCAACTCTTTTTTCTCAT+TGG | - | chr7_3:63892759-63892778 | None:intergenic | 35.0% |
| AGAAACAAGTCATCACTCTT+GGG | + | chr7_3:63892923-63892942 | Msa1116280:CDS | 35.0% | |
| !!! | CCCCAATTAACACTTTTTCT+TGG | + | chr7_3:63892965-63892984 | Msa1116280:intron | 35.0% |
| ACTATACTTTGTTGCAGACA+TGG | + | chr7_3:63893117-63893136 | Msa1116280:intron | 35.0% | |
| ! | CTTTTCCATGAAAACTCTAG+AGG | - | chr7_3:63893162-63893181 | None:intergenic | 35.0% |
| CATTGATCAAACGCTTATGA+CGG | - | chr7_3:63893193-63893212 | None:intergenic | 35.0% | |
| !! | TCTTTTGACTCTGTTTGCTA+TGG | + | chr7_3:63893384-63893403 | Msa1116280:intron | 35.0% |
| GTATATCTAAGTGTTTGGGT+TGG | + | chr7_3:63893653-63893672 | Msa1116280:intron | 35.0% | |
| AACTACCAAAAATACTCGTG+TGG | - | chr7_3:63893688-63893707 | None:intergenic | 35.0% | |
| ATCAGTAGTAACAGAAGAAG+CGG | - | chr7_3:63892669-63892688 | None:intergenic | 35.0% | |
| TTCTGTTACTACTGATGCTA+CGG | + | chr7_3:63892673-63892692 | Msa1116280:CDS | 35.0% | |
| !! | ACTAAGGAAATTTGCTGAAG+TGG | + | chr7_3:63892730-63892749 | Msa1116280:CDS | 35.0% |
| !! | CTAAGGAAATTTGCTGAAGT+GGG | + | chr7_3:63892731-63892750 | Msa1116280:CDS | 35.0% |
| !!! | ACGCAACTCTTTTTTCTCAT+TGG | - | chr7_3:63892759-63892778 | None:intergenic | 35.0% |
| AGAAACAAGTCATCACTCTT+GGG | + | chr7_3:63892923-63892942 | Msa1116280:CDS | 35.0% | |
| !!! | CCCCAATTAACACTTTTTCT+TGG | + | chr7_3:63892965-63892984 | Msa1116280:intron | 35.0% |
| ACTATACTTTGTTGCAGACA+TGG | + | chr7_3:63893117-63893136 | Msa1116280:intron | 35.0% | |
| ! | CTTTTCCATGAAAACTCTAG+AGG | - | chr7_3:63893162-63893181 | None:intergenic | 35.0% |
| CATTGATCAAACGCTTATGA+CGG | - | chr7_3:63893193-63893212 | None:intergenic | 35.0% | |
| !! | TCTTTTGACTCTGTTTGCTA+TGG | + | chr7_3:63893384-63893403 | Msa1116280:intron | 35.0% |
| GTATATCTAAGTGTTTGGGT+TGG | + | chr7_3:63893653-63893672 | Msa1116280:intron | 35.0% | |
| AACTACCAAAAATACTCGTG+TGG | - | chr7_3:63893688-63893707 | None:intergenic | 35.0% | |
| !!! | GATGGTTTTATGAGGATGGA+TGG | - | chr7_3:63892555-63892574 | None:intergenic | 40.0% |
| CAATCTGAGAGCTCTTCAAA+CGG | + | chr7_3:63892812-63892831 | Msa1116280:CDS | 40.0% | |
| CAGAAACAAGTCATCACTCT+TGG | + | chr7_3:63892922-63892941 | Msa1116280:CDS | 40.0% | |
| TGAATCGTTAGAGATGAGTC+CGG | + | chr7_3:63893580-63893599 | Msa1116280:intron | 40.0% | |
| !! | TAAGTGTTTGGGTTGGAAGT+TGG | + | chr7_3:63893660-63893679 | Msa1116280:intron | 40.0% |
| ! | TTTAGGGAGCTTTGTAGGAT+TGG | + | chr7_3:63893706-63893725 | Msa1116280:intron | 40.0% |
| ! | TTAGGGAGCTTTGTAGGATT+GGG | + | chr7_3:63893707-63893726 | Msa1116280:intron | 40.0% |
| AGAAAATTAGTGTCCTGTGC+TGG | + | chr7_3:63893738-63893757 | Msa1116280:intron | 40.0% | |
| !!! | GTTGGAATGTTTTCGGTGTT+TGG | + | chr7_3:63893837-63893856 | Msa1116280:CDS | 40.0% |
| !!! | GATGGTTTTATGAGGATGGA+TGG | - | chr7_3:63892555-63892574 | None:intergenic | 40.0% |
| CAATCTGAGAGCTCTTCAAA+CGG | + | chr7_3:63892812-63892831 | Msa1116280:CDS | 40.0% | |
| CAGAAACAAGTCATCACTCT+TGG | + | chr7_3:63892922-63892941 | Msa1116280:CDS | 40.0% | |
| TGAATCGTTAGAGATGAGTC+CGG | + | chr7_3:63893580-63893599 | Msa1116280:intron | 40.0% | |
| !! | TAAGTGTTTGGGTTGGAAGT+TGG | + | chr7_3:63893660-63893679 | Msa1116280:intron | 40.0% |
| ! | TTTAGGGAGCTTTGTAGGAT+TGG | + | chr7_3:63893706-63893725 | Msa1116280:intron | 40.0% |
| ! | TTAGGGAGCTTTGTAGGATT+GGG | + | chr7_3:63893707-63893726 | Msa1116280:intron | 40.0% |
| AGAAAATTAGTGTCCTGTGC+TGG | + | chr7_3:63893738-63893757 | Msa1116280:intron | 40.0% | |
| !!! | GTTGGAATGTTTTCGGTGTT+TGG | + | chr7_3:63893837-63893856 | Msa1116280:CDS | 40.0% |
| AGTAGTAACAGAAGAAGCGG+AGG | - | chr7_3:63892666-63892685 | None:intergenic | 45.0% | |
| CAAACGCCGCAAAAAGATGA+AGG | + | chr7_3:63892784-63892803 | Msa1116280:CDS | 45.0% | |
| ACTCTTGGGAACCATTCACA+AGG | + | chr7_3:63892937-63892956 | Msa1116280:CDS | 45.0% | |
| ACATGGCGTAGAACTGTAGA+AGG | + | chr7_3:63893134-63893153 | Msa1116280:intron | 45.0% | |
| !!! | AGGTGCCTCTAGAGTTTTCA+TGG | + | chr7_3:63893154-63893173 | Msa1116280:intron | 45.0% |
| GGCATTGCTTTCATCTGATC+AGG | - | chr7_3:63893270-63893289 | None:intergenic | 45.0% | |
| GAATCGTTAGAGATGAGTCC+GGG | + | chr7_3:63893581-63893600 | Msa1116280:intron | 45.0% | |
| AATCGTTAGAGATGAGTCCG+GGG | + | chr7_3:63893582-63893601 | Msa1116280:intron | 45.0% | |
| TCTTGGAAGGGAGATTCTAC+TGG | + | chr7_3:63893621-63893640 | Msa1116280:intron | 45.0% | |
| !!! | TGGTGCCACACGAGTATTTT+TGG | + | chr7_3:63893680-63893699 | Msa1116280:intron | 45.0% |
| ! | GGTAGTTTAGGGAGCTTTGT+AGG | + | chr7_3:63893701-63893720 | Msa1116280:intron | 45.0% |
| ! | TAGGGAGCTTTGTAGGATTG+GGG | + | chr7_3:63893708-63893727 | Msa1116280:intron | 45.0% |
| !! | GTGGGCTGTTGGAATGTTTT+CGG | + | chr7_3:63893830-63893849 | Msa1116280:CDS | 45.0% |
| AGTAGTAACAGAAGAAGCGG+AGG | - | chr7_3:63892666-63892685 | None:intergenic | 45.0% | |
| CAAACGCCGCAAAAAGATGA+AGG | + | chr7_3:63892784-63892803 | Msa1116280:CDS | 45.0% | |
| ACTCTTGGGAACCATTCACA+AGG | + | chr7_3:63892937-63892956 | Msa1116280:CDS | 45.0% | |
| ACATGGCGTAGAACTGTAGA+AGG | + | chr7_3:63893134-63893153 | Msa1116280:intron | 45.0% | |
| !!! | AGGTGCCTCTAGAGTTTTCA+TGG | + | chr7_3:63893154-63893173 | Msa1116280:intron | 45.0% |
| GGCATTGCTTTCATCTGATC+AGG | - | chr7_3:63893270-63893289 | None:intergenic | 45.0% | |
| GAATCGTTAGAGATGAGTCC+GGG | + | chr7_3:63893581-63893600 | Msa1116280:intron | 45.0% | |
| AATCGTTAGAGATGAGTCCG+GGG | + | chr7_3:63893582-63893601 | Msa1116280:intron | 45.0% | |
| TCTTGGAAGGGAGATTCTAC+TGG | + | chr7_3:63893621-63893640 | Msa1116280:intron | 45.0% | |
| !!! | TGGTGCCACACGAGTATTTT+TGG | + | chr7_3:63893680-63893699 | Msa1116280:intron | 45.0% |
| ! | GGTAGTTTAGGGAGCTTTGT+AGG | + | chr7_3:63893701-63893720 | Msa1116280:intron | 45.0% |
| ! | TAGGGAGCTTTGTAGGATTG+GGG | + | chr7_3:63893708-63893727 | Msa1116280:intron | 45.0% |
| !! | GTGGGCTGTTGGAATGTTTT+CGG | + | chr7_3:63893830-63893849 | Msa1116280:CDS | 45.0% |
| GAGGATGGATGGACCGTTAT+AGG | - | chr7_3:63892544-63892563 | None:intergenic | 50.0% | |
| AGTAACAGAAGAAGCGGAGG+TGG | - | chr7_3:63892663-63892682 | None:intergenic | 50.0% | |
| AAGCGACCTCCTTTCCACAA+CGG | - | chr7_3:63892846-63892865 | None:intergenic | 50.0% | |
| !!! | GGAAAGGAGGTCGCTTTTAC+CGG | + | chr7_3:63892850-63892869 | Msa1116280:CDS | 50.0% |
| ! | TTTTACCGGCAACAGTGAGC+CGG | + | chr7_3:63892864-63892883 | Msa1116280:CDS | 50.0% |
| TATCTCTAACCCTGAGCTGC+CGG | - | chr7_3:63892901-63892920 | None:intergenic | 50.0% | |
| TTGGGGTCTCACCTTGTGAA+TGG | - | chr7_3:63892951-63892970 | None:intergenic | 50.0% | |
| GAAGGGAGATTCTACTGGTC+TGG | + | chr7_3:63893626-63893645 | Msa1116280:intron | 50.0% | |
| GCAAAACCACCCTGAAAAGC+CGG | - | chr7_3:63893805-63893824 | None:intergenic | 50.0% | |
| !! | AGGGTGGTTTTGCCATGTGT+GGG | + | chr7_3:63893812-63893831 | Msa1116280:CDS | 50.0% |
| !! | TTTTGCCATGTGTGGGCTGT+TGG | + | chr7_3:63893819-63893838 | Msa1116280:CDS | 50.0% |
| ACATTCCAACAGCCCACACA+TGG | - | chr7_3:63893827-63893846 | None:intergenic | 50.0% | |
| GAGGATGGATGGACCGTTAT+AGG | - | chr7_3:63892544-63892563 | None:intergenic | 50.0% | |
| AGTAACAGAAGAAGCGGAGG+TGG | - | chr7_3:63892663-63892682 | None:intergenic | 50.0% | |
| AAGCGACCTCCTTTCCACAA+CGG | - | chr7_3:63892846-63892865 | None:intergenic | 50.0% | |
| !!! | GGAAAGGAGGTCGCTTTTAC+CGG | + | chr7_3:63892850-63892869 | Msa1116280:CDS | 50.0% |
| ! | TTTTACCGGCAACAGTGAGC+CGG | + | chr7_3:63892864-63892883 | Msa1116280:CDS | 50.0% |
| TATCTCTAACCCTGAGCTGC+CGG | - | chr7_3:63892901-63892920 | None:intergenic | 50.0% | |
| TTGGGGTCTCACCTTGTGAA+TGG | - | chr7_3:63892951-63892970 | None:intergenic | 50.0% | |
| GAAGGGAGATTCTACTGGTC+TGG | + | chr7_3:63893626-63893645 | Msa1116280:intron | 50.0% | |
| GCAAAACCACCCTGAAAAGC+CGG | - | chr7_3:63893805-63893824 | None:intergenic | 50.0% | |
| !! | AGGGTGGTTTTGCCATGTGT+GGG | + | chr7_3:63893812-63893831 | Msa1116280:CDS | 50.0% |
| !! | TTTTGCCATGTGTGGGCTGT+TGG | + | chr7_3:63893819-63893838 | Msa1116280:CDS | 50.0% |
| ACATTCCAACAGCCCACACA+TGG | - | chr7_3:63893827-63893846 | None:intergenic | 50.0% | |
| AGAAGCGGAGGTGGTTGTTG+TGG | - | chr7_3:63892654-63892673 | None:intergenic | 55.0% | |
| !! | TGCTGGTTCCAGTGGTGTGT+TGG | + | chr7_3:63893755-63893774 | Msa1116280:intron | 55.0% |
| ! | GCTGGTTCCAGTGGTGTGTT+GGG | + | chr7_3:63893756-63893775 | Msa1116280:intron | 55.0% |
| CTGGTTCCAGTGGTGTGTTG+GGG | + | chr7_3:63893757-63893776 | Msa1116280:intron | 55.0% | |
| TGGTTCCAGTGGTGTGTTGG+GGG | + | chr7_3:63893758-63893777 | Msa1116280:intron | 55.0% | |
| ! | TTGCTCCTGTCCGGCTTTTC+AGG | + | chr7_3:63893792-63893811 | Msa1116280:CDS | 55.0% |
| ! | TGCTCCTGTCCGGCTTTTCA+GGG | + | chr7_3:63893793-63893812 | Msa1116280:CDS | 55.0% |
| !! | CAGGGTGGTTTTGCCATGTG+TGG | + | chr7_3:63893811-63893830 | Msa1116280:CDS | 55.0% |
| AGAAGCGGAGGTGGTTGTTG+TGG | - | chr7_3:63892654-63892673 | None:intergenic | 55.0% | |
| !! | TGCTGGTTCCAGTGGTGTGT+TGG | + | chr7_3:63893755-63893774 | Msa1116280:intron | 55.0% |
| ! | GCTGGTTCCAGTGGTGTGTT+GGG | + | chr7_3:63893756-63893775 | Msa1116280:intron | 55.0% |
| CTGGTTCCAGTGGTGTGTTG+GGG | + | chr7_3:63893757-63893776 | Msa1116280:intron | 55.0% | |
| TGGTTCCAGTGGTGTGTTGG+GGG | + | chr7_3:63893758-63893777 | Msa1116280:intron | 55.0% | |
| ! | TTGCTCCTGTCCGGCTTTTC+AGG | + | chr7_3:63893792-63893811 | Msa1116280:CDS | 55.0% |
| ! | TGCTCCTGTCCGGCTTTTCA+GGG | + | chr7_3:63893793-63893812 | Msa1116280:CDS | 55.0% |
| !! | CAGGGTGGTTTTGCCATGTG+TGG | + | chr7_3:63893811-63893830 | Msa1116280:CDS | 55.0% |
| AAACGGCACCACTGCCGTTG+TGG | + | chr7_3:63892829-63892848 | Msa1116280:CDS | 60.0% | |
| GCACCACTGCCGTTGTGGAA+AGG | + | chr7_3:63892834-63892853 | Msa1116280:CDS | 60.0% | |
| CCTCCTTTCCACAACGGCAG+TGG | - | chr7_3:63892840-63892859 | None:intergenic | 60.0% | |
| CCACTGCCGTTGTGGAAAGG+AGG | + | chr7_3:63892837-63892856 | Msa1116280:CDS | 60.0% | |
| GACTTCCGGCTCACTGTTGC+CGG | - | chr7_3:63892872-63892891 | None:intergenic | 60.0% | |
| TGAGCCGGAAGTCAGTGCTC+CGG | + | chr7_3:63892879-63892898 | Msa1116280:CDS | 60.0% | |
| !! | GTGTCCTGTGCTGGTTCCAG+TGG | + | chr7_3:63893747-63893766 | Msa1116280:intron | 60.0% |
| CACACCACTGGAACCAGCAC+AGG | - | chr7_3:63893754-63893773 | None:intergenic | 60.0% | |
| TTCCAGTGGTGTGTTGGGGG+TGG | + | chr7_3:63893761-63893780 | Msa1116280:intron | 60.0% | |
| ! | GAGCTCAGGTTGCTCCTGTC+CGG | + | chr7_3:63893783-63893802 | Msa1116280:CDS | 60.0% |
| !! | TCCTGTCCGGCTTTTCAGGG+TGG | + | chr7_3:63893796-63893815 | Msa1116280:CDS | 60.0% |
| ACCACCCTGAAAAGCCGGAC+AGG | - | chr7_3:63893800-63893819 | None:intergenic | 60.0% | |
| AAACGGCACCACTGCCGTTG+TGG | + | chr7_3:63892829-63892848 | Msa1116280:CDS | 60.0% | |
| GCACCACTGCCGTTGTGGAA+AGG | + | chr7_3:63892834-63892853 | Msa1116280:CDS | 60.0% | |
| CCTCCTTTCCACAACGGCAG+TGG | - | chr7_3:63892840-63892859 | None:intergenic | 60.0% | |
| CCACTGCCGTTGTGGAAAGG+AGG | + | chr7_3:63892837-63892856 | Msa1116280:CDS | 60.0% | |
| GACTTCCGGCTCACTGTTGC+CGG | - | chr7_3:63892872-63892891 | None:intergenic | 60.0% | |
| TGAGCCGGAAGTCAGTGCTC+CGG | + | chr7_3:63892879-63892898 | Msa1116280:CDS | 60.0% | |
| !! | GTGTCCTGTGCTGGTTCCAG+TGG | + | chr7_3:63893747-63893766 | Msa1116280:intron | 60.0% |
| CACACCACTGGAACCAGCAC+AGG | - | chr7_3:63893754-63893773 | None:intergenic | 60.0% | |
| TTCCAGTGGTGTGTTGGGGG+TGG | + | chr7_3:63893761-63893780 | Msa1116280:intron | 60.0% | |
| ! | GAGCTCAGGTTGCTCCTGTC+CGG | + | chr7_3:63893783-63893802 | Msa1116280:CDS | 60.0% |
| !! | TCCTGTCCGGCTTTTCAGGG+TGG | + | chr7_3:63893796-63893815 | Msa1116280:CDS | 60.0% |
| ACCACCCTGAAAAGCCGGAC+AGG | - | chr7_3:63893800-63893819 | None:intergenic | 60.0% | |
| !! | GCTGCCGGAGCACTGACTTC+CGG | - | chr7_3:63892886-63892905 | None:intergenic | 65.0% |
| AGTCAGTGCTCCGGCAGCTC+AGG | + | chr7_3:63892888-63892907 | Msa1116280:CDS | 65.0% | |
| GTCAGTGCTCCGGCAGCTCA+GGG | + | chr7_3:63892889-63892908 | Msa1116280:CDS | 65.0% | |
| CTCCACCCCCAACACACCAC+TGG | - | chr7_3:63893766-63893785 | None:intergenic | 65.0% | |
| GTGTGTTGGGGGTGGAGCTC+AGG | + | chr7_3:63893769-63893788 | Msa1116280:CDS | 65.0% | |
| !! | GCTGCCGGAGCACTGACTTC+CGG | - | chr7_3:63892886-63892905 | None:intergenic | 65.0% |
| AGTCAGTGCTCCGGCAGCTC+AGG | + | chr7_3:63892888-63892907 | Msa1116280:CDS | 65.0% | |
| GTCAGTGCTCCGGCAGCTCA+GGG | + | chr7_3:63892889-63892908 | Msa1116280:CDS | 65.0% | |
| CTCCACCCCCAACACACCAC+TGG | - | chr7_3:63893766-63893785 | None:intergenic | 65.0% | |
| GTGTGTTGGGGGTGGAGCTC+AGG | + | chr7_3:63893769-63893788 | Msa1116280:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_3 | gene | 63892501 | 63893862 | 63892501 | ID=Msa1116280;Name=Msa1116280 |
| chr7_3 | mRNA | 63892501 | 63893862 | 63892501 | ID=Msa1116280-mRNA-1;Parent=Msa1116280;Name=Msa1116280-mRNA-1;_AED=0.32;_eAED=0.32;_QI=131|0|0.5|0.5|0|1|2|0|140 |
| chr7_3 | exon | 63892501 | 63892958 | 63892501 | ID=Msa1116280-mRNA-1:exon:15109;Parent=Msa1116280-mRNA-1 |
| chr7_3 | exon | 63893767 | 63893862 | 63893767 | ID=Msa1116280-mRNA-1:exon:15110;Parent=Msa1116280-mRNA-1 |
| chr7_3 | five_prime_UTR | 63892501 | 63892631 | 63892501 | ID=Msa1116280-mRNA-1:five_prime_utr;Parent=Msa1116280-mRNA-1 |
| chr7_3 | CDS | 63892632 | 63892958 | 63892632 | ID=Msa1116280-mRNA-1:cds;Parent=Msa1116280-mRNA-1 |
| chr7_3 | CDS | 63893767 | 63893862 | 63893767 | ID=Msa1116280-mRNA-1:cds;Parent=Msa1116280-mRNA-1 |
| Gene Sequence |
| Protein sequence |
