AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1116470

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1116470 MtrunA17_Chr7g0258851 96.040 606 18 2 1 605 1 601 0.0 1211
Msa1116470 MtrunA17_Chr1g0175671 63.398 571 137 9 27 594 11 512 0.0 706
Msa1116470 MtrunA17_Chr1g0213281 62.323 353 132 1 252 603 175 527 1.96e-173 503
Msa1116470 MtrunA17_Chr4g0068111 54.472 369 163 4 227 593 90 455 2.01e-155 454
Msa1116470 MtrunA17_Chr5g0413271 55.585 376 153 3 217 592 116 477 3.57e-152 447
Msa1116470 MtrunA17_Chr8g0368461 46.183 524 227 10 81 592 49 529 3.63e-150 444
Msa1116470 MtrunA17_Chr4g0071391 46.194 381 200 2 215 595 75 450 8.92e-134 399
Msa1116470 MtrunA17_Chr7g0269991 45.433 427 210 6 171 595 66 471 4.65e-126 379
Msa1116470 MtrunA17_Chr7g0259711 45.000 360 189 6 252 605 91 447 2.12e-103 320
Msa1116470 MtrunA17_Chr3g0105301 40.571 350 184 7 252 592 43 377 9.35e-96 298
Msa1116470 MtrunA17_Chr2g0283581 42.274 343 173 6 252 593 42 360 8.77e-95 295
Msa1116470 MtrunA17_Chr2g0287901 43.466 352 184 6 252 595 97 441 1.29e-94 298
Msa1116470 MtrunA17_Chr5g0430371 40.390 359 180 7 252 592 58 400 1.38e-94 296
Msa1116470 MtrunA17_Chr1g0171171 41.935 341 181 6 251 591 52 375 7.97e-94 293
Msa1116470 MtrunA17_Chr4g0045951 40.230 348 184 6 247 593 40 364 2.68e-91 286
Msa1116470 MtrunA17_Chr1g0210771 39.247 372 206 7 222 591 29 382 1.92e-90 284
Msa1116470 MtrunA17_Chr2g0325481 40.816 343 178 6 251 592 49 367 3.20e-89 281
Msa1116470 MtrunA17_Chr2g0314801 41.935 341 173 7 251 588 32 350 5.30e-87 274
Msa1116470 MtrunA17_Chr4g0045941 39.650 343 183 6 252 593 33 352 3.50e-86 272
Msa1116470 MtrunA17_Chr3g0085071 38.953 344 182 6 251 591 45 363 1.23e-85 271
Msa1116470 MtrunA17_Chr4g0041011 40.351 342 177 7 252 591 47 363 6.90e-85 269
Msa1116470 MtrunA17_Chr3g0126021 38.770 374 189 9 239 595 113 463 2.17e-84 271
Msa1116470 MtrunA17_Chr2g0314791 40.634 347 171 10 252 592 29 346 7.74e-83 263
Msa1116470 MtrunA17_Chr3g0085081 38.012 342 186 6 252 591 31 348 2.49e-82 262
Msa1116470 MtrunA17_Chr4g0005491 38.504 361 202 8 247 594 57 410 3.79e-82 264
Msa1116470 MtrunA17_Chr3g0091031 37.427 342 188 6 252 591 31 348 9.41e-82 261
Msa1116470 MtrunA17_Chr3g0113671 37.500 352 202 7 252 592 106 450 5.49e-81 262
Msa1116470 MtrunA17_Chr5g0413851 38.056 360 197 7 235 592 25 360 1.20e-80 258
Msa1116470 MtrunA17_Chr5g0437291 37.216 352 206 7 252 592 165 512 2.36e-80 262
Msa1116470 MtrunA17_Chr8g0384151 38.286 350 191 6 249 592 87 417 1.54e-79 258
Msa1116470 MtrunA17_Chr3g0097891 38.192 343 188 7 252 592 31 351 1.21e-78 253
Msa1116470 MtrunA17_Chr7g0243301 38.936 357 194 9 251 592 63 410 2.52e-78 254
Msa1116470 MtrunA17_Chr4g0006991 37.607 351 201 8 251 591 85 427 4.28e-78 254
Msa1116470 MtrunA17_Chr3g0114101 38.202 356 192 9 252 592 89 431 2.04e-77 252
Msa1116470 MtrunA17_Chr4g0005481 35.062 405 241 9 196 588 49 443 3.97e-75 246
Msa1116470 MtrunA17_Chr8g0360521 35.593 354 201 8 252 592 71 410 2.05e-74 244
Msa1116470 MtrunA17_Chr5g0437601 37.815 357 192 9 252 592 83 425 2.74e-73 241
Msa1116470 MtrunA17_Chr7g0242701 37.037 351 203 8 251 591 85 427 2.12e-67 225
Msa1116470 MtrunA17_Chr1g0178081 34.758 351 164 6 252 596 55 346 3.45e-64 215
Msa1116470 MtrunA17_Chr6g0476041 28.715 498 294 16 122 596 59 518 2.91e-55 196
Msa1116470 MtrunA17_Chr1g0188191 29.532 491 269 17 136 597 144 586 3.99e-55 196
Msa1116470 MtrunA17_Chr8g0387921 32.873 362 199 13 251 587 73 415 8.37e-53 186
Msa1116470 MtrunA17_Chr8g0347321 31.389 360 216 11 251 592 94 440 1.42e-51 183
Msa1116470 MtrunA17_Chr1g0209921 38.912 239 128 7 251 486 43 266 9.04e-51 176
Msa1116470 MtrunA17_Chr8g0391481 34.435 363 192 14 251 587 26 368 1.73e-48 173
Msa1116470 MtrunA17_Chr5g0414051 32.804 378 209 14 252 605 75 431 4.79e-48 174
Msa1116470 MtrunA17_Chr3g0140371 32.620 374 206 14 252 601 18 369 1.70e-47 170
Msa1116470 MtrunA17_Chr6g0456691 31.429 385 210 13 248 604 74 432 2.46e-47 172
Msa1116470 MtrunA17_Chr5g0414091 33.333 366 204 13 252 594 85 433 1.37e-46 169
Msa1116470 MtrunA17_Chr5g0414061 32.591 359 203 13 251 587 93 434 7.06e-45 165
Msa1116470 MtrunA17_Chr5g0414041 33.243 370 206 14 252 598 87 438 9.35e-45 165
Msa1116470 MtrunA17_Chr6g0456681 32.432 370 195 15 252 591 64 408 1.69e-43 161
Msa1116470 MtrunA17_Chr7g0226991 31.967 366 208 14 252 594 57 404 2.91e-43 160
Msa1116470 MtrunA17_Chr2g0283851 30.214 374 202 15 253 594 56 402 4.18e-42 156
Msa1116470 MtrunA17_Chr4g0049421 32.022 356 207 15 252 587 48 388 5.08e-41 153
Msa1116470 MtrunA17_Chr6g0451321 30.541 370 206 17 252 595 116 460 4.50e-40 152
Msa1116470 MtrunA17_Chr4g0070341 27.623 467 280 17 142 591 46 471 1.63e-39 150
Msa1116470 MtrunA17_Chr6g0455901 29.620 368 209 15 252 591 71 416 5.35e-38 145
Msa1116470 MtrunA17_Chr8g0384421 29.379 354 222 12 252 591 133 472 7.43e-38 146
Msa1116470 MtrunA17_Chr2g0287931 46.032 126 65 2 312 435 2 126 3.99e-29 112
Msa1116470 MtrunA17_Chr7g0221271 36.250 160 88 2 233 385 53 205 8.32e-28 111
Msa1116470 MtrunA17_Chr7g0221291 50.000 90 45 0 251 340 78 167 4.08e-27 108
Msa1116470 MtrunA17_Chr3g0085101 43.396 106 58 1 449 552 1 106 3.77e-25 100
Msa1116470 MtrunA17_Chr1g0209931 41.000 100 47 2 497 596 10 97 1.90e-18 80.9
Msa1116470 MtrunA17_Chr7g0221281 29.218 243 145 9 369 593 5 238 1.55e-17 82.8
Msa1116470 MtrunA17_Chr5g0414081 31.937 191 105 8 417 587 10 195 4.87e-16 77.4
Msa1116470 MtrunA17_Chr2g0287911 40.789 76 38 1 231 306 40 108 5.79e-13 65.5
Msa1116470 MtrunA17_Chr5g0429191 57.778 45 18 1 540 584 2 45 7.74e-13 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1116470 AT5G06700.1 54.976 633 229 8 2 605 3 608 0.0 663
Msa1116470 AT3G12060.1 55.143 593 207 10 3 594 4 538 0.0 632
Msa1116470 AT1G60790.1 55.402 361 158 2 235 592 173 533 5.08e-152 449
Msa1116470 AT5G49340.1 55.014 349 155 2 247 593 95 443 7.16e-146 430
Msa1116470 AT5G20590.1 48.718 351 177 2 245 594 134 482 3.09e-133 399
Msa1116470 AT3G62390.1 42.984 449 225 11 150 594 53 474 3.74e-124 375
Msa1116470 AT5G19160.1 44.658 365 188 5 241 595 88 448 1.57e-103 321
Msa1116470 AT3G06080.2 44.134 358 189 4 245 595 96 449 1.49e-101 317
Msa1116470 AT1G29050.1 37.760 384 209 7 211 593 26 380 6.94e-92 288
Msa1116470 AT5G06230.2 41.783 359 193 5 251 599 20 372 8.58e-92 288
Msa1116470 AT5G06230.1 41.783 359 193 5 251 599 61 413 1.67e-91 288
Msa1116470 AT1G48880.1 40.443 361 180 8 237 587 100 435 7.36e-90 285
Msa1116470 AT2G34070.1 36.898 374 211 5 222 593 35 385 3.50e-89 281
Msa1116470 AT1G78710.1 39.011 364 190 9 231 592 24 357 4.78e-88 278
Msa1116470 AT3G11570.1 41.071 336 188 5 268 599 98 427 3.68e-87 278
Msa1116470 AT5G58600.1 38.571 350 192 9 252 592 66 401 1.95e-86 275
Msa1116470 AT5G20590.2 47.951 244 126 1 245 487 134 377 1.03e-85 272
Msa1116470 AT2G42570.1 38.372 344 186 6 251 592 46 365 3.45e-85 270
Msa1116470 AT2G31110.2 35.904 376 217 7 217 591 10 362 6.43e-85 270
Msa1116470 AT2G40160.2 36.592 358 206 8 252 595 77 427 4.05e-84 270
Msa1116470 AT2G30010.1 39.045 356 188 9 252 592 56 397 4.43e-84 269
Msa1116470 AT2G30010.2 39.045 356 188 9 252 592 99 440 8.25e-84 269
Msa1116470 AT3G62390.2 40.278 360 189 8 150 505 53 390 1.03e-83 268
Msa1116470 AT3G54260.1 38.728 346 186 8 252 592 51 375 1.87e-82 264
Msa1116470 AT2G40160.1 36.571 350 201 9 252 587 77 419 2.06e-82 265
Msa1116470 AT2G30900.1 38.551 345 187 6 252 592 43 366 2.96e-81 260
Msa1116470 AT1G73140.1 38.764 356 198 9 252 598 67 411 1.68e-80 260
Msa1116470 AT2G40150.1 36.011 361 207 7 251 594 70 423 4.61e-79 256
Msa1116470 AT5G01620.2 38.506 348 194 8 251 588 109 446 5.88e-79 257
Msa1116470 AT5G01620.1 38.506 348 194 8 251 588 109 446 5.88e-79 257
Msa1116470 AT5G01620.3 38.506 348 194 8 251 588 117 454 8.85e-79 257
Msa1116470 AT3G55990.1 36.338 355 208 7 251 594 139 486 3.92e-78 256
Msa1116470 AT3G14850.2 37.791 344 191 7 247 588 29 351 4.55e-77 249
Msa1116470 AT5G01360.2 35.328 351 210 7 251 591 35 378 8.60e-75 244
Msa1116470 AT5G01360.1 35.328 351 210 7 251 591 91 434 2.66e-74 244
Msa1116470 AT5G19160.2 45.565 248 134 1 241 487 88 335 1.34e-72 237
Msa1116470 AT3G11030.1 37.006 354 200 9 252 592 106 449 2.19e-72 239
Msa1116470 AT2G38320.1 35.574 357 206 10 251 592 58 405 2.31e-72 238
Msa1116470 AT2G40320.1 36.467 351 205 8 252 592 81 423 2.26e-71 236
Msa1116470 AT3G06080.1 43.852 244 136 1 245 487 96 339 5.20e-67 222
Msa1116470 AT2G38320.2 34.441 331 194 9 276 592 1 322 1.53e-62 210
Msa1116470 AT2G34070.2 36.131 274 150 5 322 593 1 251 2.76e-59 199
Msa1116470 AT1G78710.2 33.058 363 160 10 231 592 17 297 3.77e-58 197
Msa1116470 AT5G58600.2 37.131 237 134 4 252 486 66 289 3.05e-56 192
Msa1116470 AT1G01430.1 32.143 420 248 13 198 595 47 451 7.24e-55 193
Msa1116470 AT5G06230.3 38.710 248 145 2 251 491 61 308 9.67e-55 188
Msa1116470 AT2G31110.3 34.717 265 160 4 217 481 10 261 2.27e-54 186
Msa1116470 AT1G70230.1 35.475 358 193 14 252 594 79 413 6.88e-53 187
Msa1116470 AT4G25360.1 30.667 375 213 11 251 597 174 529 7.30e-53 189
Msa1116470 AT4G25360.2 30.667 375 213 11 251 597 174 529 7.30e-53 189
Msa1116470 AT5G51640.1 30.469 384 219 11 251 605 137 501 2.70e-52 187
Msa1116470 AT2G40160.3 33.471 242 148 5 252 487 77 311 6.34e-51 178
Msa1116470 AT2G30900.2 37.662 231 131 4 252 481 43 261 3.48e-50 175
Msa1116470 AT4G23790.1 32.973 370 201 14 251 592 78 428 7.54e-50 179
Msa1116470 AT4G11090.1 32.877 365 196 12 251 587 78 421 3.25e-48 174
Msa1116470 AT3G14850.1 35.316 269 151 7 322 588 1 248 8.73e-48 168
Msa1116470 AT5G64470.3 31.638 354 217 14 252 593 55 395 1.20e-47 172
Msa1116470 AT4G01080.1 31.667 360 216 11 251 595 90 434 2.63e-47 172
Msa1116470 AT3G28150.1 31.880 367 209 11 251 597 69 414 3.15e-47 171
Msa1116470 AT5G64470.2 31.302 361 215 16 252 593 55 401 1.76e-46 169
Msa1116470 AT2G31110.1 35.426 223 127 5 370 591 8 214 3.73e-46 162
Msa1116470 AT5G15890.1 26.476 593 320 20 32 587 5 518 9.03e-46 170
Msa1116470 AT5G15900.1 32.603 365 206 14 252 595 67 412 2.64e-45 166
Msa1116470 AT5G15900.2 32.603 365 206 14 252 595 86 431 3.34e-45 166
Msa1116470 AT3G02440.1 31.978 369 207 12 252 597 127 474 2.61e-42 159
Msa1116470 AT2G14530.1 29.863 365 211 12 252 591 62 406 2.79e-42 157
Msa1116470 AT3G02440.2 31.978 369 207 12 252 597 135 482 3.23e-42 159
Msa1116470 AT5G64020.1 27.731 357 236 12 252 591 57 408 5.66e-38 145
Msa1116470 AT5G20680.6 28.045 353 228 11 252 591 118 457 8.81e-36 140
Msa1116470 AT5G20680.4 28.045 353 228 11 252 591 212 551 1.19e-35 141
Msa1116470 AT5G20680.1 28.045 353 228 11 252 591 212 551 1.19e-35 141
Msa1116470 AT5G20680.3 28.045 353 228 11 252 591 212 551 1.19e-35 141
Msa1116470 AT5G20680.5 28.045 353 228 11 252 591 212 551 1.19e-35 141
Msa1116470 AT5G20680.2 28.045 353 228 11 252 591 194 533 1.87e-35 140
Msa1116470 AT5G64470.1 30.882 272 171 11 252 513 55 319 2.34e-30 122
Msa1116470 AT2G37720.1 26.989 352 233 11 252 591 143 482 3.34e-30 124
Msa1116470 AT5G64470.4 31.907 257 158 11 252 498 55 304 3.64e-30 121

Find 137 sgRNAs with CRISPR-Local

Find 268 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCTTATTCATTTGTATTTA+AGG 0.026700 7_3:-64071255 Msa1116470:intron
TGAATATGATGCAGTTATTT+TGG 0.146183 7_3:+64072754 None:intergenic
AATCCACACAGCTGAATTTA+TGG 0.179659 7_3:+64068649 None:intergenic
GCTATTCTGCTTCCCATTTC+AGG 0.198403 7_3:-64070642 Msa1116470:intron
CAAAATTCTATGGGGAAAAT+TGG 0.211751 7_3:-64068854 Msa1116470:three_prime_UTR
GAAATCAGCATGCATTTAAA+TGG 0.235111 7_3:-64068678 Msa1116470:three_prime_UTR
CATTTGCACTTTACCTGAAA+TGG 0.238761 7_3:+64070629 None:intergenic
TGCAGTCATTGGTGCCTTCC+TGG 0.250995 7_3:-64069790 Msa1116470:CDS
TCAGAACTCAAATTCTTGTT+AGG 0.259301 7_3:+64071972 None:intergenic
GTTGAATACCCAAAATTCTA+TGG 0.265794 7_3:-64068864 Msa1116470:three_prime_UTR
AAGAGGCTTCGCCTCTAAAA+TGG 0.267736 7_3:+64071273 None:intergenic
AAGATTATCAGAAGTATAAA+TGG 0.273489 7_3:-64071728 Msa1116470:CDS
TAAATTCAGCTGTGTGGATT+TGG 0.290042 7_3:-64068646 Msa1116470:three_prime_UTR
CTGTCATCCTCGTGATATTC+AGG 0.292947 7_3:+64069899 None:intergenic
AAGTTGAACTACTACTTTCA+TGG 0.298361 7_3:-64072636 Msa1116470:exon
TACTTCTGATAATCTTTATC+AGG 0.304001 7_3:+64071735 None:intergenic
CATAGACATGGCTACCTTCT+TGG 0.307943 7_3:+64070767 None:intergenic
ATTTGAGTTCTTCATAGCTT+TGG 0.337985 7_3:+64072034 None:intergenic
TTCTCCAGCACCCTCATCTT+AGG 0.338480 7_3:+64069955 None:intergenic
AAGTCCATAGTCTTGTTTAG+AGG 0.347400 7_3:-64070664 Msa1116470:CDS
CTTAAATACAAATGAATAAG+AGG 0.350601 7_3:+64071256 None:intergenic
TGCAGTCTTGGAATCTCAAC+GGG 0.359692 7_3:+64069809 None:intergenic
TATCAATGGGCGCAGTTTCA+TGG 0.359918 7_3:+64070004 None:intergenic
GATATCATTGTCTTCAATAC+TGG 0.368321 7_3:-64070993 Msa1116470:CDS
CAACAAATATGCAGAGTTGA+TGG 0.374691 7_3:-64071880 Msa1116470:CDS
AACTGATAACGTTTCTTCAT+AGG 0.377021 7_3:+64068884 None:intergenic
TTGTTGGTGATTCTCTCAAT+AGG 0.379512 7_3:-64071376 Msa1116470:CDS
CAGTTCAATTGTATTAGAAA+TGG 0.385843 7_3:-64071762 Msa1116470:CDS
AAATTCTTGTTAGGGATAGT+TGG 0.386032 7_3:+64071981 None:intergenic
ATAGCCTCTAAACAAGACTA+TGG 0.392621 7_3:+64070660 None:intergenic
TTAGTAGTTCCTACTCCTAT+AGG 0.393314 7_3:+64072593 None:intergenic
AGAATTTCATTCCACGCATC+AGG 0.404868 7_3:+64069763 None:intergenic
CAGTGGTGGACAATGGAATT+CGG 0.407795 7_3:-64070040 Msa1116470:CDS
TCTTAGGCGGGTACTCTGTT+AGG 0.418648 7_3:+64069971 None:intergenic
GGCACCAATGACTGCAGTCT+TGG 0.426478 7_3:+64069797 None:intergenic
GTCTAGTTTGTGTAAGTTGT+TGG 0.428884 7_3:+64072556 None:intergenic
CCCAAGTTGTTATAGCTCTT+CGG 0.429231 7_3:+64070719 None:intergenic
AAGAAAGTTTATGAAGCAAA+TGG 0.436779 7_3:-64071302 Msa1116470:CDS
AAGTAGTAGTTCAACTTTGA+AGG 0.438849 7_3:+64072642 None:intergenic
CACCAACATGTTATTCCAAC+TGG 0.438938 7_3:-64068797 Msa1116470:three_prime_UTR
TAGGTACTTCTCGTTATCAA+TGG 0.440581 7_3:+64069990 None:intergenic
TCCCACTCTTGAACTAAGAA+TGG 0.443337 7_3:+64071098 None:intergenic
TAGTTATCGTTAAATGATTG+TGG 0.446553 7_3:-64068736 Msa1116470:three_prime_UTR
CTCATGATAAAACTTCTAAA+GGG 0.448781 7_3:-64070959 Msa1116470:intron
ACAGGAACATGAACATGAAC+AGG 0.449340 7_3:+64072167 None:intergenic
GCATCAGCAGAAGAGATCAT+AGG 0.453072 7_3:-64069704 Msa1116470:intron
CTTGGAAGGCTGCAACCCTT+AGG 0.453939 7_3:+64071702 None:intergenic
GATTCCAAGACTGCAGTCAT+TGG 0.456998 7_3:-64069801 Msa1116470:CDS
GTGTGATTTGTTACTAAAGA+TGG 0.457351 7_3:+64072074 None:intergenic
ACTCATGATAAAACTTCTAA+AGG 0.457588 7_3:-64070960 Msa1116470:CDS
CAGAACTCAAATTCTTGTTA+GGG 0.463399 7_3:+64071973 None:intergenic
ACAACCAAGTATGTTCCTAT+AGG 0.469081 7_3:-64072608 Msa1116470:CDS
AGGTACTTCTCGTTATCAAT+GGG 0.469131 7_3:+64069991 None:intergenic
ATTTGCACTTTACCTGAAAT+GGG 0.470384 7_3:+64070630 None:intergenic
TGTGGGGTGGGTATAATGTT+TGG 0.473505 7_3:+64072823 None:intergenic
GGTGTTGTGGTGGTTATTGT+AGG 0.473551 7_3:+64072425 None:intergenic
TTTGTTGAGAGGCAAGAGAT+TGG 0.476914 7_3:-64071402 Msa1116470:CDS
TGATAGATTGAGAAATAAGA+AGG 0.477271 7_3:+64072967 None:intergenic
GAAGTATAAATGGAAACCTA+AGG 0.478515 7_3:-64071718 Msa1116470:CDS
ACATGTTATTCCAACTGGTA+AGG 0.478980 7_3:-64068792 Msa1116470:three_prime_UTR
ATTCTCTCAATAGGAATATG+TGG 0.479362 7_3:-64071367 Msa1116470:CDS
TTGAATACCCAAAATTCTAT+GGG 0.481851 7_3:-64068863 Msa1116470:three_prime_UTR
ACGGTCACCCCTCGATATAC+CGG 0.482085 7_3:-64069864 Msa1116470:CDS
ATTACACAGCTTCACTTGCT+AGG 0.482509 7_3:-64071920 Msa1116470:CDS
CACAATCTGTGAAGTGGGGT+TGG 0.484642 7_3:+64072106 None:intergenic
CAAGAACCTGGTTTATAAAG+AGG 0.488101 7_3:+64071801 None:intergenic
GTGATATTCAGGTAGGATAC+AGG 0.492374 7_3:+64069910 None:intergenic
AGTTCTGATTCTTCATTGAA+AGG 0.499613 7_3:-64071957 Msa1116470:CDS
CATGTTATTCCAACTGGTAA+GGG 0.500979 7_3:-64068791 Msa1116470:three_prime_UTR
TCCGAAGAGCTATAACAACT+TGG 0.501825 7_3:-64070720 Msa1116470:CDS
ACACTTCGTCTTGATTTAGT+TGG 0.505333 7_3:-64071044 Msa1116470:CDS
AAATGATGAAGATGAGAGAT+GGG 0.509701 7_3:+64072681 None:intergenic
TACTCCTATAGGAACATACT+TGG 0.509826 7_3:+64072604 None:intergenic
CTATAACAACTTGGGGTAGG+TGG 0.511798 7_3:-64070711 Msa1116470:CDS
AATTGAGAAGTAGAAGAAGA+AGG 0.518373 7_3:+64072404 None:intergenic
CCGAAGAGCTATAACAACTT+GGG 0.520685 7_3:-64070719 Msa1116470:CDS
AACAAGACTATGGACTTGGT+TGG 0.522372 7_3:+64070670 None:intergenic
CCCGCCTAAGATGAGGGTGC+TGG 0.524275 7_3:-64069959 Msa1116470:CDS
AGTAGTAGTTCAACTTTGAA+GGG 0.527072 7_3:+64072643 None:intergenic
AGAGAGGGAACATTTGTTTG+CGG 0.528690 7_3:+64072994 None:intergenic
CTAAGGGTTGCAGCCTTCCA+AGG 0.532158 7_3:-64071701 Msa1116470:intron
AGTGGTGGACAATGGAATTC+GGG 0.533025 7_3:-64070039 Msa1116470:CDS
AAATGCATGCTGATTTCGAA+AGG 0.534032 7_3:+64068684 None:intergenic
TCTTATCCTCTTTATAAACC+AGG 0.534497 7_3:-64071807 Msa1116470:CDS
AGATTGAGAAATAAGAAGGA+AGG 0.534927 7_3:+64072971 None:intergenic
TATCTATCGGAGAATCTGTT+AGG 0.535704 7_3:+64068760 None:intergenic
AAATAAGAAGGAAGGAGAGA+GGG 0.537311 7_3:+64072979 None:intergenic
GAAATAAGAAGGAAGGAGAG+AGG 0.538217 7_3:+64072978 None:intergenic
GAAATGATGAAGATGAGAGA+TGG 0.540754 7_3:+64072680 None:intergenic
TCTTCTGCTGATGCTTATCT+CGG 0.542278 7_3:+64069713 None:intergenic
TCCAGCACCCTCATCTTAGG+CGG 0.543139 7_3:+64069958 None:intergenic
TTTAATGCAGTGGTGGACAA+TGG 0.545585 7_3:-64070047 Msa1116470:intron
CACCATTCTTAGTTCAAGAG+TGG 0.548350 7_3:-64071100 Msa1116470:CDS
AGGAAGGACTATTACCAAGA+AGG 0.548521 7_3:-64070781 Msa1116470:CDS
GCGCACAATCCCTTACCAGT+TGG 0.561327 7_3:+64068782 None:intergenic
AGAATGCTTGATTTGTTGAG+AGG 0.561716 7_3:-64071413 Msa1116470:CDS
ACCATTCTTAGTTCAAGAGT+GGG 0.562123 7_3:-64071099 Msa1116470:CDS
AGAAGAAGAAGGTGTTGTGG+TGG 0.562472 7_3:+64072415 None:intergenic
ACAGAATTGGATACCTTGGA+AGG 0.564594 7_3:+64071688 None:intergenic
GGAACTACTAATAATACTAC+TGG 0.564960 7_3:-64072581 Msa1116470:CDS
TCAATTATTGAACAAGAACC+TGG 0.565676 7_3:+64071789 None:intergenic
ATGAGATTGAGAAGTTGCAT+TGG 0.566578 7_3:+64072262 None:intergenic
TTCCTGGTGTTCCTGATGCG+TGG 0.566916 7_3:-64069774 Msa1116470:CDS
TTGTCTTCAATACTGGCCAC+TGG 0.567532 7_3:-64070986 Msa1116470:CDS
TAACGATAACTAATATCTAT+CGG 0.568555 7_3:+64068747 None:intergenic
GAGCTATAACAACTTGGGGT+AGG 0.571905 7_3:-64070714 Msa1116470:CDS
CCAGCACCCTCATCTTAGGC+GGG 0.574801 7_3:+64069959 None:intergenic
CTGCAGTCTTGGAATCTCAA+CGG 0.582121 7_3:+64069808 None:intergenic
CAGAGTACCCGCCTAAGATG+AGG 0.590274 7_3:-64069966 Msa1116470:CDS
AGTAGAAGAAGAAGGTGTTG+TGG 0.595942 7_3:+64072412 None:intergenic
AAGTATGTTCCTATAGGAGT+AGG 0.596005 7_3:-64072602 Msa1116470:CDS
TATAACAACTTGGGGTAGGT+GGG 0.598986 7_3:-64070710 Msa1116470:CDS
AGAGTACCCGCCTAAGATGA+GGG 0.602147 7_3:-64069965 Msa1116470:CDS
AAGTATAAATGGAAACCTAA+GGG 0.602347 7_3:-64071717 Msa1116470:CDS
TCTAAACAAGACTATGGACT+TGG 0.603081 7_3:+64070666 None:intergenic
TCTTCAATACTGGCCACTGG+TGG 0.603633 7_3:-64070983 Msa1116470:CDS
CATCCTCGTGATATTCAGGT+AGG 0.603802 7_3:+64069903 None:intergenic
TTCTCTCAATAGGAATATGT+GGG 0.605396 7_3:-64071366 Msa1116470:CDS
GACAAGGATAGAAAATGAAG+TGG 0.608024 7_3:+64072715 None:intergenic
TACCAGTTGGAATAACATGT+TGG 0.611783 7_3:+64068795 None:intergenic
GTGGTGGTTATTGTAGGAGA+AGG 0.615357 7_3:+64072431 None:intergenic
CGAAGAGCTATAACAACTTG+GGG 0.615761 7_3:-64070718 Msa1116470:CDS
CATTCAATTCATCATAGACA+TGG 0.618288 7_3:+64070755 None:intergenic
TTCCACGCATCAGGAACACC+AGG 0.632725 7_3:+64069772 None:intergenic
TGATGAATTGAATGTTCTTG+AGG 0.633161 7_3:-64070746 Msa1116470:CDS
GTAGGATTATAAATTCTCTG+TGG 0.636747 7_3:-64071135 Msa1116470:intron
CTTGCTAGGAAACAGAACAA+TGG 0.648916 7_3:-64071906 Msa1116470:CDS
AAAAGGATGAACAAGATCAG+TGG 0.649933 7_3:+64072322 None:intergenic
AAGACTTTGAGTCAAAAGTG+TGG 0.653405 7_3:+64072923 None:intergenic
GGTGGACAATGGAATTCGGG+TGG 0.657454 7_3:-64070036 Msa1116470:CDS
ACGCATCAGGAACACCAGGA+AGG 0.667233 7_3:+64069776 None:intergenic
TTTGCTTCCGGTATATCGAG+GGG 0.679052 7_3:+64069857 None:intergenic
GTGCCATAAATTCAGCTGTG+TGG 0.681418 7_3:-64068652 Msa1116470:three_prime_UTR
ATGGGAGAGATCTAAAGACA+AGG 0.688517 7_3:+64072699 None:intergenic
TGAATACCCAAAATTCTATG+GGG 0.701058 7_3:-64068862 Msa1116470:three_prime_UTR
TATCCTACCTGAATATCACG+AGG 0.721350 7_3:-64069906 Msa1116470:CDS
GCAGTCTTGGAATCTCAACG+GGG 0.793976 7_3:+64069810 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATAATTTTTTCATTTGTGTT+TGG + chr7_3:64069390-64069409 None:intergenic 15.0%
!!! TAAAATTTGTTTAACAGAAT+TGG + chr7_3:64069951-64069970 None:intergenic 15.0%
!!! TAATTTTCATAGGTTAATTT+TGG - chr7_3:64070086-64070105 Msa1116470:intron 15.0%
!!! ATTTTGTAGTTTACTATAAT+TGG - chr7_3:64070123-64070142 Msa1116470:intron 15.0%
!!! TTTTGTAGTTTACTATAATT+GGG - chr7_3:64070124-64070143 Msa1116470:intron 15.0%
!!! TTTTAAGAAAAATAGGAAAA+AGG + chr7_3:64072046-64072065 None:intergenic 15.0%
!!! TTTCCTATTTTTCTTAAAAA+AGG - chr7_3:64072047-64072066 Msa1116470:CDS 15.0%
!!! TAACCTTTTTTAAGAAAAAT+AGG + chr7_3:64072053-64072072 None:intergenic 15.0%
!! ATATATATAATTAAGAGATG+TGG - chr7_3:64072091-64072110 Msa1116470:CDS 15.0%
!! AAAAATACAGACAAAATAAT+CGG + chr7_3:64072566-64072585 None:intergenic 15.0%
!!! TATCCATTTTTATAGATTTT+TGG - chr7_3:64072622-64072641 Msa1116470:exon 15.0%
!!! ATCCATTTTTATAGATTTTT+GGG - chr7_3:64072623-64072642 Msa1116470:exon 15.0%
!!! TGGAAAAAAGTATGAAAAAA+TGG + chr7_3:64069250-64069269 None:intergenic 20.0%
!!! TTATTTTGAAATGGATCAAA+AGG + chr7_3:64069321-64069340 None:intergenic 20.0%
!!! ATAGAAGTGTTATTTTGAAA+TGG + chr7_3:64069330-64069349 None:intergenic 20.0%
!!! AAGATTATCAGAAGTATAAA+TGG - chr7_3:64069895-64069914 Msa1116470:CDS 20.0%
!!! TGGTATTTCTTAATTTTCAT+AGG - chr7_3:64070076-64070095 Msa1116470:intron 20.0%
!! CTTAAATACAAATGAATAAG+AGG + chr7_3:64070370-64070389 None:intergenic 20.0%
!! CTCTTATTCATTTGTATTTA+AGG - chr7_3:64070368-64070387 Msa1116470:intron 20.0%
!! CTTAATTAACATTCATAACA+AGG + chr7_3:64070804-64070823 None:intergenic 20.0%
!! TTATGAATGTTAATTAAGTC+TGG - chr7_3:64070806-64070825 Msa1116470:intron 20.0%
!!! ATAAGATTTTGTTCACAATT+CGG + chr7_3:64071226-64071245 None:intergenic 20.0%
!!! ATGTTTTTATAGTATATCAC+TGG + chr7_3:64071299-64071318 None:intergenic 20.0%
!! ATCAAAATGACAAATAAAAG+TGG - chr7_3:64071375-64071394 Msa1116470:CDS 20.0%
!!! AAGGCATTTTTTTTTTTGTA+TGG + chr7_3:64072027-64072046 None:intergenic 20.0%
!!! TTTTTCTTCCTTTTGTTTAA+AGG - chr7_3:64072339-64072358 Msa1116470:CDS 20.0%
!! GCAATATACTATCAAAATAT+AGG + chr7_3:64072650-64072669 None:intergenic 20.0%
!! TAACGATAACTAATATCTAT+CGG + chr7_3:64072879-64072898 None:intergenic 20.0%
! TGATAGATTGAGAAATAAGA+AGG + chr7_3:64068659-64068678 None:intergenic 25.0%
!! TGAATATGATGCAGTTATTT+TGG + chr7_3:64068872-64068891 None:intergenic 25.0%
!!! AGTAGTTTTAGTTTTGAGAA+TGG + chr7_3:64069109-64069128 None:intergenic 25.0%
! GTTATTTAGTTGTGAAAAAG+TGG + chr7_3:64069280-64069299 None:intergenic 25.0%
!!! ATTGAAGTATTGTTTTTGCT+TGG + chr7_3:64069495-64069514 None:intergenic 25.0%
!!! ATGAAGTGTGATTTTTTTGA+TGG - chr7_3:64069774-64069793 Msa1116470:CDS 25.0%
!!! TGATTTTTTTGATGGAGAAT+GGG - chr7_3:64069782-64069801 Msa1116470:CDS 25.0%
! CAGTTCAATTGTATTAGAAA+TGG - chr7_3:64069861-64069880 Msa1116470:CDS 25.0%
! TACTTCTGATAATCTTTATC+AGG + chr7_3:64069891-64069910 None:intergenic 25.0%
! AAGTATAAATGGAAACCTAA+GGG - chr7_3:64069906-64069925 Msa1116470:CDS 25.0%
!!! AAGATTTGTCTTATTTGTGT+TGG - chr7_3:64070056-64070075 Msa1116470:intron 25.0%
!! TTTTCATAGGTTAATTTTGG+AGG - chr7_3:64070089-64070108 Msa1116470:intron 25.0%
! AAGAAAGTTTATGAAGCAAA+TGG - chr7_3:64070321-64070340 Msa1116470:intron 25.0%
!! TACTCTTTTCCTAATGATAT+TGG - chr7_3:64070439-64070458 Msa1116470:intron 25.0%
!! TCCTAATGATATTGGTTATT+TGG - chr7_3:64070447-64070466 Msa1116470:intron 25.0%
! ACCAAATAACCAATATCATT+AGG + chr7_3:64070451-64070470 None:intergenic 25.0%
!! ATGATATTGGTTATTTGGTT+TGG - chr7_3:64070452-64070471 Msa1116470:intron 25.0%
! ACTCATGATAAAACTTCTAA+AGG - chr7_3:64070663-64070682 Msa1116470:CDS 25.0%
! CTCATGATAAAACTTCTAAA+GGG - chr7_3:64070664-64070683 Msa1116470:CDS 25.0%
! TTGCATATGACATATCATAT+AGG + chr7_3:64071325-64071344 None:intergenic 25.0%
! AAATGACAAATAAAAGTGGT+TGG - chr7_3:64071379-64071398 Msa1116470:CDS 25.0%
! CTGCATTAAAATAAAAACGA+TGG + chr7_3:64071566-64071585 None:intergenic 25.0%
!!! TCGTTTTTATTTTAATGCAG+TGG - chr7_3:64071566-64071585 Msa1116470:intron 25.0%
!!! TTTTTATTTTAATGCAGTGG+TGG - chr7_3:64071569-64071588 Msa1116470:intron 25.0%
! TTGGATATAATGTATAAGTG+AGG + chr7_3:64071969-64071988 None:intergenic 25.0%
! GAAAATGAAGATACAAAACA+AGG + chr7_3:64072176-64072195 None:intergenic 25.0%
! ATTGTAAATCTCTAATCAAC+TGG - chr7_3:64072221-64072240 Msa1116470:CDS 25.0%
! GACCCAAAAATCTATAAAAA+TGG + chr7_3:64072628-64072647 None:intergenic 25.0%
! TTGAATACCCAAAATTCTAT+GGG - chr7_3:64072760-64072779 Msa1116470:five_prime_UTR 25.0%
!! AATTTTCCCCATAGAATTTT+GGG + chr7_3:64072770-64072789 None:intergenic 25.0%
! TAGTTATCGTTAAATGATTG+TGG - chr7_3:64072887-64072906 Msa1116470:five_prime_UTR 25.0%
AGATTGAGAAATAAGAAGGA+AGG + chr7_3:64068655-64068674 None:intergenic 30.0%
AAGAGAACAAAAAATGTGTG+GGG + chr7_3:64068819-64068838 None:intergenic 30.0%
GAAGAGAACAAAAAATGTGT+GGG + chr7_3:64068820-64068839 None:intergenic 30.0%
AGAAGAGAACAAAAAATGTG+TGG + chr7_3:64068821-64068840 None:intergenic 30.0%
AAATGATGAAGATGAGAGAT+GGG + chr7_3:64068945-64068964 None:intergenic 30.0%
AGTAGTAGTTCAACTTTGAA+GGG + chr7_3:64068983-64069002 None:intergenic 30.0%
AAGTAGTAGTTCAACTTTGA+AGG + chr7_3:64068984-64069003 None:intergenic 30.0%
AAGTTGAACTACTACTTTCA+TGG - chr7_3:64068987-64069006 Msa1116470:intron 30.0%
GGAACTACTAATAATACTAC+TGG - chr7_3:64069042-64069061 Msa1116470:intron 30.0%
AATTGAGAAGTAGAAGAAGA+AGG + chr7_3:64069222-64069241 None:intergenic 30.0%
ATTTAGTTGTGAAAAAGTGG+TGG + chr7_3:64069277-64069296 None:intergenic 30.0%
! ATGTGATGAATTTTGTACAG+TGG + chr7_3:64069427-64069446 None:intergenic 30.0%
!!! GTATTGTTTTTGCTTGGAAT+TGG + chr7_3:64069489-64069508 None:intergenic 30.0%
! TTTTTCACAATCTGTGAAGT+GGG + chr7_3:64069525-64069544 None:intergenic 30.0%
!! GTGTGATTTGTTACTAAAGA+TGG + chr7_3:64069552-64069571 None:intergenic 30.0%
! ATTTGAGTTCTTCATAGCTT+TGG + chr7_3:64069592-64069611 None:intergenic 30.0%
AAATTCTTGTTAGGGATAGT+TGG + chr7_3:64069645-64069664 None:intergenic 30.0%
CAGAACTCAAATTCTTGTTA+GGG + chr7_3:64069653-64069672 None:intergenic 30.0%
TCAGAACTCAAATTCTTGTT+AGG + chr7_3:64069654-64069673 None:intergenic 30.0%
! AGTTCTGATTCTTCATTGAA+AGG - chr7_3:64069666-64069685 Msa1116470:intron 30.0%
!!! GTGATTTTTTTGATGGAGAA+TGG - chr7_3:64069781-64069800 Msa1116470:CDS 30.0%
TCTTATCCTCTTTATAAACC+AGG - chr7_3:64069816-64069835 Msa1116470:CDS 30.0%
TCAATTATTGAACAAGAACC+TGG + chr7_3:64069837-64069856 None:intergenic 30.0%
GAAGTATAAATGGAAACCTA+AGG - chr7_3:64069905-64069924 Msa1116470:CDS 30.0%
TTTAACAGAATTGGATACCT+TGG + chr7_3:64069942-64069961 None:intergenic 30.0%
!! CTTGTTTGTTTTCTAGATGA+TGG - chr7_3:64070007-64070026 Msa1116470:CDS 30.0%
!!! AGATGATGGATGTTTTTGTT+TGG - chr7_3:64070021-64070040 Msa1116470:CDS 30.0%
ATTCTCTCAATAGGAATATG+TGG - chr7_3:64070256-64070275 Msa1116470:intron 30.0%
TTCTCTCAATAGGAATATGT+GGG - chr7_3:64070257-64070276 Msa1116470:intron 30.0%
!! GTTATTTGGTTTGGTATCAA+TGG - chr7_3:64070461-64070480 Msa1116470:intron 30.0%
!!! TTTGGTATCAATGGTTTTGT+AGG - chr7_3:64070470-64070489 Msa1116470:intron 30.0%
GTAGGATTATAAATTCTCTG+TGG - chr7_3:64070488-64070507 Msa1116470:intron 30.0%
!! TTCTTTGTCCCATTTTTATC+TGG + chr7_3:64070555-64070574 None:intergenic 30.0%
AGATAAAAATGGGACAAAGA+AGG - chr7_3:64070554-64070573 Msa1116470:intron 30.0%
GATATCATTGTCTTCAATAC+TGG - chr7_3:64070630-64070649 Msa1116470:intron 30.0%
TGATAGCAAATTTGCAATTG+AGG - chr7_3:64070704-64070723 Msa1116470:CDS 30.0%
CATTCAATTCATCATAGACA+TGG + chr7_3:64070871-64070890 None:intergenic 30.0%
TGATGAATTGAATGTTCTTG+AGG - chr7_3:64070877-64070896 Msa1116470:intron 30.0%
ATTTGCACTTTACCTGAAAT+GGG + chr7_3:64070996-64071015 None:intergenic 30.0%
! TCAGTAACTCATACTTCTTT+TGG - chr7_3:64071019-64071038 Msa1116470:CDS 30.0%
GGTTTCACATTCATTACTAT+TGG - chr7_3:64071040-64071059 Msa1116470:CDS 30.0%
! CATTCATTACTATTGGTTGT+TGG - chr7_3:64071047-64071066 Msa1116470:CDS 30.0%
AAGAAATGCATTCTCATCTT+GGG + chr7_3:64071089-64071108 None:intergenic 30.0%
!! GATCTTCTTTGTTTCTATCT+TGG - chr7_3:64071157-64071176 Msa1116470:intron 30.0%
!! GTTGTCATGCATTTATTTTC+TGG + chr7_3:64071477-64071496 None:intergenic 30.0%
AAATGCATGACAACTCTTAT+TGG - chr7_3:64071483-64071502 Msa1116470:intron 30.0%
GATATAATGTATAAGTGAGG+TGG + chr7_3:64071966-64071985 None:intergenic 30.0%
CTATTTCAACTTGAACTGAT+TGG + chr7_3:64071988-64072007 None:intergenic 30.0%
GAGAAGAGAAGAGAATATTA+TGG - chr7_3:64072123-64072142 Msa1116470:CDS 30.0%
! TCTGTCTCGAGTTAATTTTT+CGG - chr7_3:64072294-64072313 Msa1116470:CDS 30.0%
TACATTGAAATGCACTTATC+TGG + chr7_3:64072387-64072406 None:intergenic 30.0%
CATTTCAATGTATCCTATGT+GGG - chr7_3:64072395-64072414 Msa1116470:CDS 30.0%
TTTGCAGACAGTTAATTACA+TGG + chr7_3:64072479-64072498 None:intergenic 30.0%
AACTGTCTGCAAATTCAATA+AGG - chr7_3:64072486-64072505 Msa1116470:CDS 30.0%
! AACTGATAACGTTTCTTCAT+AGG + chr7_3:64072742-64072761 None:intergenic 30.0%
GTTGAATACCCAAAATTCTA+TGG - chr7_3:64072759-64072778 Msa1116470:five_prime_UTR 30.0%
TGAATACCCAAAATTCTATG+GGG - chr7_3:64072761-64072780 Msa1116470:five_prime_UTR 30.0%
! CAATTTTCCCCATAGAATTT+TGG + chr7_3:64072771-64072790 None:intergenic 30.0%
CAAAATTCTATGGGGAAAAT+TGG - chr7_3:64072769-64072788 Msa1116470:five_prime_UTR 30.0%
GAAATCAGCATGCATTTAAA+TGG - chr7_3:64072945-64072964 Msa1116470:five_prime_UTR 30.0%
AAATAAGAAGGAAGGAGAGA+GGG + chr7_3:64068647-64068666 None:intergenic 35.0%
AAGACTTTGAGTCAAAAGTG+TGG + chr7_3:64068703-64068722 None:intergenic 35.0%
GACAAGGATAGAAAATGAAG+TGG + chr7_3:64068911-64068930 None:intergenic 35.0%
GAAATGATGAAGATGAGAGA+TGG + chr7_3:64068946-64068965 None:intergenic 35.0%
ACAACCAAGTATGTTCCTAT+AGG - chr7_3:64069015-64069034 Msa1116470:intron 35.0%
TACTCCTATAGGAACATACT+TGG + chr7_3:64069022-64069041 None:intergenic 35.0%
AAGTATGTTCCTATAGGAGT+AGG - chr7_3:64069021-64069040 Msa1116470:intron 35.0%
TTAGTAGTTCCTACTCCTAT+AGG + chr7_3:64069033-64069052 None:intergenic 35.0%
! GTCTAGTTTGTGTAAGTTGT+TGG + chr7_3:64069070-64069089 None:intergenic 35.0%
TGTGAAAAAGTGGTGGTATT+TGG + chr7_3:64069270-64069289 None:intergenic 35.0%
AAAAGGATGAACAAGATCAG+TGG + chr7_3:64069304-64069323 None:intergenic 35.0%
ATGAGATTGAGAAGTTGCAT+TGG + chr7_3:64069364-64069383 None:intergenic 35.0%
! CTTGGAATTGGATTTTGAAC+AGG + chr7_3:64069477-64069496 None:intergenic 35.0%
! TTTTCACAATCTGTGAAGTG+GGG + chr7_3:64069524-64069543 None:intergenic 35.0%
!! CTTTTTCACAATCTGTGAAG+TGG + chr7_3:64069526-64069545 None:intergenic 35.0%
CAACAAATATGCAGAGTTGA+TGG - chr7_3:64069743-64069762 Msa1116470:CDS 35.0%
CAAGAACCTGGTTTATAAAG+AGG + chr7_3:64069825-64069844 None:intergenic 35.0%
! TTGTTGTGTTGCTCATAGAT+TGG - chr7_3:64070179-64070198 Msa1116470:intron 35.0%
!! AGAATGCTTGATTTGTTGAG+AGG - chr7_3:64070210-64070229 Msa1116470:intron 35.0%
!! TTGTTGGTGATTCTCTCAAT+AGG - chr7_3:64070247-64070266 Msa1116470:intron 35.0%
! AATGGAAGAGTCCATTTTAG+AGG - chr7_3:64070339-64070358 Msa1116470:intron 35.0%
ACCATTCTTAGTTCAAGAGT+GGG - chr7_3:64070524-64070543 Msa1116470:intron 35.0%
TGGGAAATGCCAGATAAAAA+TGG - chr7_3:64070543-64070562 Msa1116470:intron 35.0%
GGGAAATGCCAGATAAAAAT+GGG - chr7_3:64070544-64070563 Msa1116470:intron 35.0%
ACACTTCGTCTTGATTTAGT+TGG - chr7_3:64070579-64070598 Msa1116470:intron 35.0%
! TGAGGCTCATTTTCTGTTTA+TGG - chr7_3:64070722-64070741 Msa1116470:CDS 35.0%
! AGTCTGGTGTGAATATTTTC+AGG - chr7_3:64070822-64070841 Msa1116470:intron 35.0%
!! TGGTGTGAATATTTTCAGGA+AGG - chr7_3:64070826-64070845 Msa1116470:intron 35.0%
TCTAAACAAGACTATGGACT+TGG + chr7_3:64070960-64070979 None:intergenic 35.0%
!! AAGTCCATAGTCTTGTTTAG+AGG - chr7_3:64070959-64070978 Msa1116470:intron 35.0%
ATAGCCTCTAAACAAGACTA+TGG + chr7_3:64070966-64070985 None:intergenic 35.0%
CATTTGCACTTTACCTGAAA+TGG + chr7_3:64070997-64071016 None:intergenic 35.0%
GAAGAAATGCATTCTCATCT+TGG + chr7_3:64071090-64071109 None:intergenic 35.0%
!! CAGTGTTCATTTTTAGACCA+TGG - chr7_3:64071109-64071128 Msa1116470:CDS 35.0%
TTGTTCACAATTCGGAAGAT+AGG + chr7_3:64071218-64071237 None:intergenic 35.0%
AGGTACTTCTCGTTATCAAT+GGG + chr7_3:64071635-64071654 None:intergenic 35.0%
TAGGTACTTCTCGTTATCAA+TGG + chr7_3:64071636-64071655 None:intergenic 35.0%
!!! TAAGTGAGGTGGAAGTTTTT+TGG + chr7_3:64071955-64071974 None:intergenic 35.0%
AATTAAGAGATGTGGTTACC+TGG - chr7_3:64072099-64072118 Msa1116470:CDS 35.0%
GCATTTCAATGTATCCTATG+TGG - chr7_3:64072394-64072413 Msa1116470:CDS 35.0%
GTAGCATATAAAACCCACAT+AGG + chr7_3:64072411-64072430 None:intergenic 35.0%
TACACTGAGTCACTTATTAG+TGG - chr7_3:64072428-64072447 Msa1116470:CDS 35.0%
TGTCTGCAAATTCAATAAGG+CGG - chr7_3:64072489-64072508 Msa1116470:CDS 35.0%
ATAAGGCGGTATCAATGTAA+AGG - chr7_3:64072503-64072522 Msa1116470:CDS 35.0%
TTTCCGTAATATCGCGATTA+TGG - chr7_3:64072584-64072603 Msa1116470:CDS 35.0%
TCACCATAATCGCGATATTA+CGG + chr7_3:64072590-64072609 None:intergenic 35.0%
TGCAACTCTTTATATGCTTG+AGG - chr7_3:64072667-64072686 Msa1116470:five_prime_UTR 35.0%
TCTTTATATGCTTGAGGCAT+AGG - chr7_3:64072673-64072692 Msa1116470:five_prime_UTR 35.0%
TACCAGTTGGAATAACATGT+TGG + chr7_3:64072831-64072850 None:intergenic 35.0%
ACATGTTATTCCAACTGGTA+AGG - chr7_3:64072831-64072850 Msa1116470:five_prime_UTR 35.0%
CATGTTATTCCAACTGGTAA+GGG - chr7_3:64072832-64072851 Msa1116470:five_prime_UTR 35.0%
TATCTATCGGAGAATCTGTT+AGG + chr7_3:64072866-64072885 None:intergenic 35.0%
!! AAATGCATGCTGATTTCGAA+AGG + chr7_3:64072942-64072961 None:intergenic 35.0%
AATCCACACAGCTGAATTTA+TGG + chr7_3:64072977-64072996 None:intergenic 35.0%
TAAATTCAGCTGTGTGGATT+TGG - chr7_3:64072977-64072996 Msa1116470:five_prime_UTR 35.0%
AGAGAGGGAACATTTGTTTG+CGG + chr7_3:64068632-64068651 None:intergenic 40.0%
GAAATAAGAAGGAAGGAGAG+AGG + chr7_3:64068648-64068667 None:intergenic 40.0%
GAACAAAAAATGTGTGGGGT+GGG + chr7_3:64068815-64068834 None:intergenic 40.0%
AGAACAAAAAATGTGTGGGG+TGG + chr7_3:64068816-64068835 None:intergenic 40.0%
ATGGGAGAGATCTAAAGACA+AGG + chr7_3:64068927-64068946 None:intergenic 40.0%
!! AGTAGAAGAAGAAGGTGTTG+TGG + chr7_3:64069214-64069233 None:intergenic 40.0%
ACAGGAACATGAACATGAAC+AGG + chr7_3:64069459-64069478 None:intergenic 40.0%
ATTACACAGCTTCACTTGCT+AGG - chr7_3:64069703-64069722 Msa1116470:intron 40.0%
CTTGCTAGGAAACAGAACAA+TGG - chr7_3:64069717-64069736 Msa1116470:CDS 40.0%
ACAGAATTGGATACCTTGGA+AGG + chr7_3:64069938-64069957 None:intergenic 40.0%
TTTGTTGAGAGGCAAGAGAT+TGG - chr7_3:64070221-64070240 Msa1116470:intron 40.0%
!!! GGCAAGAGATTGGTTTTTGT+TGG - chr7_3:64070231-64070250 Msa1116470:intron 40.0%
CACCATTCTTAGTTCAAGAG+TGG - chr7_3:64070523-64070542 Msa1116470:intron 40.0%
TCCCACTCTTGAACTAAGAA+TGG + chr7_3:64070528-64070547 None:intergenic 40.0%
! TTTTATCATGAGTCCACCAG+TGG + chr7_3:64070656-64070675 None:intergenic 40.0%
AGGAAGGACTATTACCAAGA+AGG - chr7_3:64070842-64070861 Msa1116470:intron 40.0%
TCCGAAGAGCTATAACAACT+TGG - chr7_3:64070903-64070922 Msa1116470:intron 40.0%
CCCAAGTTGTTATAGCTCTT+CGG + chr7_3:64070907-64070926 None:intergenic 40.0%
CCGAAGAGCTATAACAACTT+GGG - chr7_3:64070904-64070923 Msa1116470:intron 40.0%
CGAAGAGCTATAACAACTTG+GGG - chr7_3:64070905-64070924 Msa1116470:intron 40.0%
TATAACAACTTGGGGTAGGT+GGG - chr7_3:64070913-64070932 Msa1116470:intron 40.0%
! AACAAGACTATGGACTTGGT+TGG + chr7_3:64070956-64070975 None:intergenic 40.0%
!! AACGAGTCTTTCTAGTTCCA+TGG + chr7_3:64071129-64071148 None:intergenic 40.0%
!! TTTAATGCAGTGGTGGACAA+TGG - chr7_3:64071576-64071595 Msa1116470:intron 40.0%
GTGATATTCAGGTAGGATAC+AGG + chr7_3:64071716-64071735 None:intergenic 40.0%
TATCCTACCTGAATATCACG+AGG - chr7_3:64071717-64071736 Msa1116470:CDS 40.0%
! TCACGAGGATGACAGATTTT+CGG - chr7_3:64071732-64071751 Msa1116470:CDS 40.0%
! ATGACAGATTTTCGGAAGGA+CGG - chr7_3:64071740-64071759 Msa1116470:CDS 40.0%
! TTTTGCTTCCGGTATATCGA+GGG + chr7_3:64071770-64071789 None:intergenic 40.0%
! ATTTTGCTTCCGGTATATCG+AGG + chr7_3:64071771-64071790 None:intergenic 40.0%
! CAGGTGATAGATTTTGCTTC+CGG + chr7_3:64071781-64071800 None:intergenic 40.0%
! AACGGGGATTTTCTTTCTTC+AGG + chr7_3:64071800-64071819 None:intergenic 40.0%
AGAATTTCATTCCACGCATC+AGG + chr7_3:64071863-64071882 None:intergenic 40.0%
TCTTCTGCTGATGCTTATCT+CGG + chr7_3:64071913-64071932 None:intergenic 40.0%
TATTCTCTTCTCTTCTCACC+AGG + chr7_3:64072120-64072139 None:intergenic 40.0%
! CATTTTCTCTCTAGCCTGAA+AGG - chr7_3:64072189-64072208 Msa1116470:CDS 40.0%
ACAATAGCAATCAGCCTTTC+AGG + chr7_3:64072206-64072225 None:intergenic 40.0%
TATTGAGATGAGCTGTTCCA+CGG - chr7_3:64072268-64072287 Msa1116470:CDS 40.0%
GGCTGTTGCCTTTAAACAAA+AGG + chr7_3:64072350-64072369 None:intergenic 40.0%
TATCTGGTGAATCCAATGCT+GGG + chr7_3:64072371-64072390 None:intergenic 40.0%
TTATCTGGTGAATCCAATGC+TGG + chr7_3:64072372-64072391 None:intergenic 40.0%
TTATATGCTTGAGGCATAGG+AGG - chr7_3:64072676-64072695 Msa1116470:five_prime_UTR 40.0%
CACCAACATGTTATTCCAAC+TGG - chr7_3:64072826-64072845 Msa1116470:five_prime_UTR 40.0%
TGTGGGGTGGGTATAATGTT+TGG + chr7_3:64068803-64068822 None:intergenic 45.0%
GTGGTGGTTATTGTAGGAGA+AGG + chr7_3:64069195-64069214 None:intergenic 45.0%
! GGTGTTGTGGTGGTTATTGT+AGG + chr7_3:64069201-64069220 None:intergenic 45.0%
!! AGAAGAAGAAGGTGTTGTGG+TGG + chr7_3:64069211-64069230 None:intergenic 45.0%
! AAGAGGCTTCGCCTCTAAAA+TGG + chr7_3:64070353-64070372 None:intergenic 45.0%
TTGTCTTCAATACTGGCCAC+TGG - chr7_3:64070637-64070656 Msa1116470:intron 45.0%
CATAGACATGGCTACCTTCT+TGG + chr7_3:64070859-64070878 None:intergenic 45.0%
GAGCTATAACAACTTGGGGT+AGG - chr7_3:64070909-64070928 Msa1116470:intron 45.0%
CTATAACAACTTGGGGTAGG+TGG - chr7_3:64070912-64070931 Msa1116470:intron 45.0%
GCTATTCTGCTTCCCATTTC+AGG - chr7_3:64070981-64071000 Msa1116470:CDS 45.0%
! AGTGGTTGGCTACAAGTTGA+AGG - chr7_3:64071393-64071412 Msa1116470:CDS 45.0%
! GTGGTTGGCTACAAGTTGAA+GGG - chr7_3:64071394-64071413 Msa1116470:CDS 45.0%
!! CAGTGGTGGACAATGGAATT+CGG - chr7_3:64071583-64071602 Msa1116470:intron 45.0%
!! AGTGGTGGACAATGGAATTC+GGG - chr7_3:64071584-64071603 Msa1116470:intron 45.0%
TATCAATGGGCGCAGTTTCA+TGG + chr7_3:64071622-64071641 None:intergenic 45.0%
CATCCTCGTGATATTCAGGT+AGG + chr7_3:64071723-64071742 None:intergenic 45.0%
CTGTCATCCTCGTGATATTC+AGG + chr7_3:64071727-64071746 None:intergenic 45.0%
! GAGGATGACAGATTTTCGGA+AGG - chr7_3:64071736-64071755 Msa1116470:CDS 45.0%
TTTGCTTCCGGTATATCGAG+GGG + chr7_3:64071769-64071788 None:intergenic 45.0%
TGCAGTCTTGGAATCTCAAC+GGG + chr7_3:64071817-64071836 None:intergenic 45.0%
CTGCAGTCTTGGAATCTCAA+CGG + chr7_3:64071818-64071837 None:intergenic 45.0%
GATTCCAAGACTGCAGTCAT+TGG - chr7_3:64071822-64071841 Msa1116470:CDS 45.0%
GCATCAGCAGAAGAGATCAT+AGG - chr7_3:64071919-64071938 Msa1116470:CDS 45.0%
TAACTCGAGACAGATAACCG+TGG + chr7_3:64072288-64072307 None:intergenic 45.0%
GGAGGAATGACAGTAAGCAT+TGG - chr7_3:64072694-64072713 Msa1116470:five_prime_UTR 45.0%
!! ACAGTAAGCATTGGTGCAGA+TGG - chr7_3:64072703-64072722 Msa1116470:five_prime_UTR 45.0%
!! CAGTAAGCATTGGTGCAGAT+GGG - chr7_3:64072704-64072723 Msa1116470:five_prime_UTR 45.0%
GTGCCATAAATTCAGCTGTG+TGG - chr7_3:64072971-64072990 Msa1116470:five_prime_UTR 45.0%
!!! ATTTTAATTTTACTAATTTT+TGG - chr7_3:64069965-64069984 Msa1116470:CDS 5.0%
CACAATCTGTGAAGTGGGGT+TGG + chr7_3:64069520-64069539 None:intergenic 50.0%
TCTTCAATACTGGCCACTGG+TGG - chr7_3:64070640-64070659 Msa1116470:intron 50.0%
TCTTAGGCGGGTACTCTGTT+AGG + chr7_3:64071655-64071674 None:intergenic 50.0%
! AGAGTACCCGCCTAAGATGA+GGG - chr7_3:64071658-64071677 Msa1116470:intron 50.0%
TTCTCCAGCACCCTCATCTT+AGG + chr7_3:64071671-64071690 None:intergenic 50.0%
GCAGTCTTGGAATCTCAACG+GGG + chr7_3:64071816-64071835 None:intergenic 50.0%
TAAAGGCAACAGCCCAGCAT+TGG - chr7_3:64072356-64072375 Msa1116470:CDS 50.0%
CTTGGAAGGCTGCAACCCTT+AGG + chr7_3:64069924-64069943 None:intergenic 55.0%
CTAAGGGTTGCAGCCTTCCA+AGG - chr7_3:64069922-64069941 Msa1116470:CDS 55.0%
GGTGGACAATGGAATTCGGG+TGG - chr7_3:64071587-64071606 Msa1116470:intron 55.0%
! CAGAGTACCCGCCTAAGATG+AGG - chr7_3:64071657-64071676 Msa1116470:intron 55.0%
TCCAGCACCCTCATCTTAGG+CGG + chr7_3:64071668-64071687 None:intergenic 55.0%
ACGGTCACCCCTCGATATAC+CGG - chr7_3:64071759-64071778 Msa1116470:CDS 55.0%
GGCACCAATGACTGCAGTCT+TGG + chr7_3:64071829-64071848 None:intergenic 55.0%
! TGCAGTCATTGGTGCCTTCC+TGG - chr7_3:64071833-64071852 Msa1116470:CDS 55.0%
ACGCATCAGGAACACCAGGA+AGG + chr7_3:64071850-64071869 None:intergenic 55.0%
TTCCTGGTGTTCCTGATGCG+TGG - chr7_3:64071849-64071868 Msa1116470:CDS 55.0%
TTCCACGCATCAGGAACACC+AGG + chr7_3:64071854-64071873 None:intergenic 55.0%
GGCTGCAATTGTGATGCGAC+TGG + chr7_3:64072545-64072564 None:intergenic 55.0%
GCGCACAATCCCTTACCAGT+TGG + chr7_3:64072844-64072863 None:intergenic 55.0%
CCAGCACCCTCATCTTAGGC+GGG + chr7_3:64071667-64071686 None:intergenic 60.0%
! CCCGCCTAAGATGAGGGTGC+TGG - chr7_3:64071664-64071683 Msa1116470:intron 65.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 64068620 64073025 64068620 ID=Msa1116470;Name=Msa1116470
chr7_3 mRNA 64068620 64073025 64068620 ID=Msa1116470-mRNA-1;Parent=Msa1116470;Name=Msa1116470-mRNA-1;_AED=0.13;_eAED=0.13;_QI=386|1|1|1|0.66|0.57|7|304|605
chr7_3 exon 64068620 64068923 64068620 ID=Msa1116470-mRNA-1:exon:15144;Parent=Msa1116470-mRNA-1
chr7_3 exon 64069705 64070059 64069705 ID=Msa1116470-mRNA-1:exon:15143;Parent=Msa1116470-mRNA-1
chr7_3 exon 64070643 64070801 64070643 ID=Msa1116470-mRNA-1:exon:15142;Parent=Msa1116470-mRNA-1
chr7_3 exon 64070960 64071153 64070960 ID=Msa1116470-mRNA-1:exon:15141;Parent=Msa1116470-mRNA-1
chr7_3 exon 64071256 64071448 64071256 ID=Msa1116470-mRNA-1:exon:15140;Parent=Msa1116470-mRNA-1
chr7_3 exon 64071702 64072159 64071702 ID=Msa1116470-mRNA-1:exon:15139;Parent=Msa1116470-mRNA-1
chr7_3 exon 64072181 64073025 64072181 ID=Msa1116470-mRNA-1:exon:15138;Parent=Msa1116470-mRNA-1
chr7_3 five_prime_UTR 64072640 64073025 64072640 ID=Msa1116470-mRNA-1:five_prime_utr;Parent=Msa1116470-mRNA-1
chr7_3 CDS 64072181 64072639 64072181 ID=Msa1116470-mRNA-1:cds;Parent=Msa1116470-mRNA-1
chr7_3 CDS 64071702 64072159 64071702 ID=Msa1116470-mRNA-1:cds;Parent=Msa1116470-mRNA-1
chr7_3 CDS 64071256 64071448 64071256 ID=Msa1116470-mRNA-1:cds;Parent=Msa1116470-mRNA-1
chr7_3 CDS 64070960 64071153 64070960 ID=Msa1116470-mRNA-1:cds;Parent=Msa1116470-mRNA-1
chr7_3 CDS 64070643 64070801 64070643 ID=Msa1116470-mRNA-1:cds;Parent=Msa1116470-mRNA-1
chr7_3 CDS 64069705 64070059 64069705 ID=Msa1116470-mRNA-1:cds;Parent=Msa1116470-mRNA-1
chr7_3 three_prime_UTR 64068620 64068923 64068620 ID=Msa1116470-mRNA-1:three_prime_utr;Parent=Msa1116470-mRNA-1
Gene Sequence

>Msa1116470

ATGGCTGATACAACCAAGTATGTTCCTATAGGAGTAGGAACTACTAATAATACTACTGGTGCCAACAACTTACACAAACTAGACTTCAAAAACATCTTCACCATTCTCAAAACTAAAACTACTGTTGCTTTTGTTTATGCTTTTATGCTTGTTTTCATTGCTTTCACTCTTTTCTTAGCTTTTTCACCTTCTCCTACAATAACCACCACAACACCTTCTTCTTCTACTTCTCAATTTTCTTCCATTTTTTCATACTTTTTTCCAAATACCACCACTTTTTCACAACTAAATAACACCACTGATCTTGTTCATCCTTTTGATCCATTTCAAAATAACACTTCTATTACTAGATCTACCAATGCAACTTCTCAATCTCATAATCCAAACACAAATGAAAAAATTATCAATAGAAACATAACCACTGTACAAAATTCATCACATGATGCAGTTCCTGTTCATCCAATTCCAAGCAAAAACAATACTTCAATCACCAACCCCACTTCACAGATTGTGAAAAAGCAACCATCTTTAGTAACAAATCACACATCAAATTCTGATGAAACCAAAGCTATGAAGAACTCAAATCAAACTACAAATGCTACTGTTAAAGCAGTTCCAACTATCCCTAACAAGAATTTGAGTTCTGATTCTTCATTGAAAGGTGTTGATTTGCATAATTACACAGCTTCACTTGCTAGGAAACAGAACAATGGAAGCAACAAATATGCAGAGTTGATGGAGTCTTTGATGAAGTGTGATTTTTTTGATGGAGAATGGGTTAAAGATGATTCTTATCCTCTTTATAAACCAGGTTCTTGTTCAATAATTGATGAACAGTTCAATTGTATTAGAAATGGAAGACCTGATAAAGATTATCAGAAGTATAAATGGAAACCTAAGGGTTGCAGCCTTCCAAGATTGGATGCACGTAGAATGCTTGATTTGTTGAGAGGCAAGAGATTGGTTTTTGTTGGTGATTCTCTCAATAGGAATATGTGGGAATCACTTATTTGTATACTAAAAAATTCTGTGAAAGATAAAAAGAAAGTTTATGAAGCAAATGGAAGAGTCCATTTTAGAGGCGAAGCCTCTTATTCATTTGTATTTAAGGATTATAAATTCTCTGTGGAGCTTTTTGTGTCACCATTCTTAGTTCAAGAGTGGGAAATGCCAGATAAAAATGGGACAAAGAAGGAAACACTTCGTCTTGATTTAGTTGGTAGATCTTCAGATCAGTATAAAGATGCAGATATCATTGTCTTCAATACTGGCCACTGGTGGACTCATGATAAAACTTCTAAAGGGAAGGACTATTACCAAGAAGGTAGCCATGTCTATGATGAATTGAATGTTCTTGAGGCGTTCCGAAGAGCTATAACAACTTGGGGTAGGTGGGTTGATGCTAACGTAAATCCAACCAAGTCCATAGTCTTGTTTAGAGGCTATTCTGCTTCCCATTTCAGTGGTGGACAATGGAATTCGGGTGGACAATGTGACCATGAAACTGCGCCCATTGATAACGAGAAGTACCTAACAGAGTACCCGCCTAAGATGAGGGTGCTGGAGAAAGTTCTTAAGAATATGAAAAATCCTGTATCCTACCTGAATATCACGAGGATGACAGATTTTCGGAAGGACGGTCACCCCTCGATATACCGGAAGCAAAATCTATCACCTGAAGAAAGAAAATCCCCGTTGAGATTCCAAGACTGCAGTCATTGGTGCCTTCCTGGTGTTCCTGATGCGTGGAATGAAATTCTCTATGCTGAACTTCTAATGAGAGAGTACCGAGATAAGCATCAGCAGAAGAGATCATAG
Protein sequence

>Msa1116470

MADTTKYVPIGVGTTNNTTGANNLHKLDFKNIFTILKTKTTVAFVYAFMLVFIAFTLFLAFSPSPTITTTTPSSSTSQFSSIFSYFFPNTTTFSQLNNTTDLVHPFDPFQNNTSITRSTNATSQSHNPNTNEKIINRNITTVQNSSHDAVPVHPIPSKNNTSITNPTSQIVKKQPSLVTNHTSNSDETKAMKNSNQTTNATVKAVPTIPNKNLSSDSSLKGVDLHNYTASLARKQNNGSNKYAELMESLMKCDFFDGEWVKDDSYPLYKPGSCSIIDEQFNCIRNGRPDKDYQKYKWKPKGCSLPRLDARRMLDLLRGKRLVFVGDSLNRNMWESLICILKNSVKDKKKVYEANGRVHFRGEASYSFVFKDYKFSVELFVSPFLVQEWEMPDKNGTKKETLRLDLVGRSSDQYKDADIIVFNTGHWWTHDKTSKGKDYYQEGSHVYDELNVLEAFRRAITTWGRWVDANVNPTKSIVLFRGYSASHFSGGQWNSGGQCDHETAPIDNEKYLTEYPPKMRVLEKVLKNMKNPVSYLNITRMTDFRKDGHPSIYRKQNLSPEERKSPLRFQDCSHWCLPGVPDAWNEILYAELLMREYRDKHQQKRS*