Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1116480 | XP_003625285.1 | 96.809 | 188 | 5 | 1 | 1 | 188 | 1 | 187 | 1.19e-131 | 377 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1116480 | sp|Q9FG36|TRL31_ARATH | 62.346 | 162 | 55 | 3 | 31 | 188 | 51 | 210 | 3.27e-69 | 212 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1116480 | G7KVF9 | 96.809 | 188 | 5 | 1 | 1 | 188 | 1 | 187 | 5.66e-132 | 377 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1116480 | Msa1162730 | 0.836671 | 8.162557e-57 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1116480 | MtrunA17_Chr7g0258871 | 96.809 | 188 | 5 | 1 | 1 | 188 | 1 | 187 | 1.09e-135 | 377 |
| Msa1116480 | MtrunA17_Chr1g0171001 | 50.450 | 111 | 52 | 1 | 76 | 186 | 79 | 186 | 2.18e-34 | 120 |
| Msa1116480 | MtrunA17_Chr3g0125821 | 25.143 | 175 | 108 | 5 | 21 | 188 | 15 | 173 | 7.10e-13 | 63.9 |
| Msa1116480 | MtrunA17_Chr8g0360031 | 29.167 | 120 | 75 | 3 | 51 | 170 | 53 | 162 | 1.16e-12 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1116480 | AT5G06690.1 | 62.346 | 162 | 55 | 3 | 31 | 188 | 51 | 210 | 3.33e-70 | 212 |
| Msa1116480 | AT5G04260.1 | 58.678 | 121 | 50 | 0 | 66 | 186 | 68 | 188 | 8.77e-47 | 152 |
| Msa1116480 | AT5G06690.2 | 55.645 | 124 | 49 | 3 | 31 | 150 | 51 | 172 | 2.14e-43 | 144 |
| Msa1116480 | AT5G06690.4 | 55.645 | 124 | 49 | 3 | 31 | 150 | 51 | 172 | 2.76e-43 | 144 |
| Msa1116480 | AT5G06690.3 | 47.059 | 102 | 48 | 3 | 31 | 128 | 51 | 150 | 4.66e-27 | 100 |
| Msa1116480 | AT3G15360.1 | 31.313 | 99 | 63 | 2 | 72 | 170 | 84 | 177 | 8.43e-13 | 64.3 |
| Msa1116480 | AT4G03520.1 | 30.303 | 99 | 64 | 3 | 72 | 170 | 78 | 171 | 1.52e-11 | 60.8 |
| Msa1116480 | AT1G19730.1 | 34.831 | 89 | 53 | 2 | 84 | 172 | 20 | 103 | 1.94e-11 | 58.9 |
| Msa1116480 | AT3G53220.1 | 35.484 | 93 | 55 | 3 | 78 | 170 | 26 | 113 | 2.75e-11 | 58.9 |
Find 38 sgRNAs with CRISPR-Local
Find 246 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GACATCCACATAATAAAATT+TGG | 0.205819 | 7_3:-64101827 | None:intergenic |
| GCTTCAAATAGATGCATTTC+CGG | 0.251648 | 7_3:-64101566 | None:intergenic |
| CTATAATAGACATAACCTTT+TGG | 0.308619 | 7_3:-64099040 | None:intergenic |
| CCAGAAAATGCCAACAATTC+AGG | 0.318570 | 7_3:+64101982 | Msa1116480:intron |
| CAAAAGGTTATGTCTATTAT+AGG | 0.327245 | 7_3:+64099041 | Msa1116480:exon |
| CAATGACTAGCCAGCCCTTA+TGG | 0.332185 | 7_3:-64102149 | None:intergenic |
| TTGTGTCGTAAGAGTTGTTT+TGG | 0.332377 | 7_3:+64099152 | Msa1116480:CDS |
| AGTAATAAAAGAAATAAATT+AGG | 0.332695 | 7_3:-64102212 | None:intergenic |
| ATGATTAATTCTAAGTGTTT+TGG | 0.352303 | 7_3:-64098958 | None:intergenic |
| ATGATGATGATGGCTAATTA+AGG | 0.360350 | 7_3:-64098993 | None:intergenic |
| GAATACACTGTTCATCTCTA+TGG | 0.378808 | 7_3:-64099097 | None:intergenic |
| AAGACCAAGTTCAGTAGAAA+TGG | 0.383882 | 7_3:+64099256 | Msa1116480:CDS |
| TGTTTGCAGCTTTGGAAAGA+TGG | 0.388102 | 7_3:+64102099 | Msa1116480:intron |
| CATCTATTTGAAGCCAAAGT+TGG | 0.425150 | 7_3:+64101575 | Msa1116480:CDS |
| GAAGTGATTGGAGGCCATAA+GGG | 0.439766 | 7_3:+64102135 | Msa1116480:CDS |
| GCTATAATGATTAACAATGT+AGG | 0.446247 | 7_3:-64102341 | None:intergenic |
| AGAAGTGATTGGAGGCCATA+AGG | 0.448140 | 7_3:+64102134 | Msa1116480:CDS |
| GCTTCCATTTCTACTGAACT+TGG | 0.448382 | 7_3:-64099260 | None:intergenic |
| GAGATGAAAGAAGAAGTGAT+TGG | 0.459326 | 7_3:+64102123 | Msa1116480:CDS |
| TGAGGACGCACCTGAATTGT+TGG | 0.470980 | 7_3:-64101992 | None:intergenic |
| ATAGGATGGCTGCTTGGTGC+CGG | 0.493739 | 7_3:+64101547 | Msa1116480:intron |
| TGAAGTTGGATGTTAAGAAA+AGG | 0.494064 | 7_3:-64098924 | None:intergenic |
| TCACAAGATAATGATGATGA+TGG | 0.497596 | 7_3:-64099003 | None:intergenic |
| TGATTGGAGGCCATAAGGGC+TGG | 0.518680 | 7_3:+64102139 | Msa1116480:CDS |
| GTTAAGAAAAGGAAAGAGAA+TGG | 0.525306 | 7_3:-64098913 | None:intergenic |
| TCAAATATAGGATGGCTGCT+TGG | 0.529801 | 7_3:+64101541 | Msa1116480:intron |
| AACAAAAGAAGATTAGAAGG+AGG | 0.550839 | 7_3:+64099195 | Msa1116480:CDS |
| CTGAGCCTATCGTTATTGAC+TGG | 0.566128 | 7_3:+64099336 | Msa1116480:CDS |
| TGGTGGACAAGGCATGAAGT+TGG | 0.584521 | 7_3:-64098938 | None:intergenic |
| ATCATATATATAAAACAAAG+AGG | 0.592865 | 7_3:+64102305 | Msa1116480:three_prime_UTR |
| ATGAAAGAAGAAGTGATTGG+AGG | 0.597943 | 7_3:+64102126 | Msa1116480:CDS |
| CTGCCACTTGAAAAGCATTG+AGG | 0.604856 | 7_3:-64099119 | None:intergenic |
| TAGAAGGAGGAATTTACGTG+TGG | 0.607009 | 7_3:+64099208 | Msa1116480:CDS |
| AAATACCAGTCAATAACGAT+AGG | 0.607970 | 7_3:-64099341 | None:intergenic |
| TGTTAAGACGGTGTGAAGCA+TGG | 0.610582 | 7_3:-64098873 | None:intergenic |
| CCACGCTTGACTAATGTCTG+AGG | 0.613310 | 7_3:-64101859 | None:intergenic |
| CCTCAGACATTAGTCAAGCG+TGG | 0.642739 | 7_3:+64101859 | Msa1116480:CDS |
| ATTTACGTGTGGAAGCTATG+TGG | 0.678095 | 7_3:+64099219 | Msa1116480:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GTAAAAAAATATAAAAGAAT+AGG | - | chr7_3:64099879-64099898 | None:intergenic | 10.0% |
| !!! | AAAAATAAAAGTTTTTTGTT+TGG | + | chr7_3:64099950-64099969 | Msa1116480:intron | 10.0% |
| !!! | TTTTGCAATTTTAATAAAAT+TGG | + | chr7_3:64101329-64101348 | Msa1116480:intron | 10.0% |
| !! | ATAAATTATTACAAATGAAA+AGG | - | chr7_3:64101404-64101423 | None:intergenic | 10.0% |
| !!! | TATACCTATATATAAAATTT+TGG | - | chr7_3:64101467-64101486 | None:intergenic | 10.0% |
| !!! | ATTTTATTTTTCTTTTATTG+TGG | - | chr7_3:64102042-64102061 | None:intergenic | 10.0% |
| !! | AGTAATAAAAGAAATAAATT+AGG | - | chr7_3:64102215-64102234 | None:intergenic | 10.0% |
| !! | TTTCTTATATGATTAAATCT+AGG | + | chr7_3:64099429-64099448 | Msa1116480:intron | 15.0% |
| !! | TTCTTATATGATTAAATCTA+GGG | + | chr7_3:64099430-64099449 | Msa1116480:intron | 15.0% |
| !!! | TTATTTTATAATTTGGTTGT+TGG | + | chr7_3:64099742-64099761 | Msa1116480:intron | 15.0% |
| !! | CATACAATAACAAAATTTAA+AGG | - | chr7_3:64100183-64100202 | None:intergenic | 15.0% |
| !!! | CTTTAAATTTTGTTATTGTA+TGG | + | chr7_3:64100181-64100200 | Msa1116480:intron | 15.0% |
| !! | AAACAAAGTTAAAGTAAATA+TGG | - | chr7_3:64100236-64100255 | None:intergenic | 15.0% |
| !!! | TTGTTTAACTTTAAAATATG+AGG | + | chr7_3:64100250-64100269 | Msa1116480:intron | 15.0% |
| !! | TACTTATTGTAACATAAATA+AGG | - | chr7_3:64100953-64100972 | None:intergenic | 15.0% |
| !!! | ATTGGTTAATTATTTTCTTA+TGG | - | chr7_3:64101750-64101769 | None:intergenic | 15.0% |
| !! | ATAAGAAAATAATTAACCAA+TGG | + | chr7_3:64101749-64101768 | Msa1116480:intron | 15.0% |
| !! | TAAGAAAATAATTAACCAAT+GGG | + | chr7_3:64101750-64101769 | Msa1116480:intron | 15.0% |
| !! | TATATAGATTAATTTAGTTG+AGG | - | chr7_3:64102013-64102032 | None:intergenic | 15.0% |
| !! | ATCATATATATAAAACAAAG+AGG | + | chr7_3:64102305-64102324 | Msa1116480:three_prime_UTR | 15.0% |
| !!! | ATGATTAATTCTAAGTGTTT+TGG | - | chr7_3:64098961-64098980 | None:intergenic | 20.0% |
| !! | AAAAACAAAAGAAGATTAGA+AGG | + | chr7_3:64099192-64099211 | Msa1116480:CDS | 20.0% |
| !!! | TTATGAAAGATAATTTGTCA+AGG | - | chr7_3:64099406-64099425 | None:intergenic | 20.0% |
| !! | TCTTATATGATTAAATCTAG+GGG | + | chr7_3:64099431-64099450 | Msa1116480:intron | 20.0% |
| !!! | TTATGCTTTTGGATTTATTT+TGG | + | chr7_3:64099645-64099664 | Msa1116480:intron | 20.0% |
| !!! | TGTTGAGTTTATTTATTTTG+AGG | + | chr7_3:64099718-64099737 | Msa1116480:intron | 20.0% |
| !!! | TTGAGGCTTATTTTATAATT+TGG | + | chr7_3:64099735-64099754 | Msa1116480:intron | 20.0% |
| !!! | TTATGATTTGTTTTATGTTG+CGG | + | chr7_3:64099772-64099791 | Msa1116480:intron | 20.0% |
| !! | TCATAACTAATAGCAAAATA+AGG | - | chr7_3:64099803-64099822 | None:intergenic | 20.0% |
| !!! | AATAAAAGTTTTTTGTTTGG+CGG | + | chr7_3:64099953-64099972 | Msa1116480:intron | 20.0% |
| !! | TGATGTATGTGATTTAATTA+GGG | - | chr7_3:64100129-64100148 | None:intergenic | 20.0% |
| !! | ATGATGTATGTGATTTAATT+AGG | - | chr7_3:64100130-64100149 | None:intergenic | 20.0% |
| !! | ATAACAAAATTTAAAGGCTA+AGG | - | chr7_3:64100177-64100196 | None:intergenic | 20.0% |
| !!! | ATTTTGTTATTGTATGGTTA+CGG | + | chr7_3:64100187-64100206 | Msa1116480:intron | 20.0% |
| !! | ATATTATACTTTCAACAAGA+TGG | - | chr7_3:64100919-64100938 | None:intergenic | 20.0% |
| !! | TTAAAACCATTAACATTTGT+AGG | - | chr7_3:64101293-64101312 | None:intergenic | 20.0% |
| !!! | CTTCTAATTTTATTCTTACA+TGG | - | chr7_3:64101431-64101450 | None:intergenic | 20.0% |
| !!! | CACACCAAAATTTTATATAT+AGG | + | chr7_3:64101460-64101479 | Msa1116480:intron | 20.0% |
| !!! | AACTTTGTTTTCTCAAATAT+AGG | + | chr7_3:64101529-64101548 | Msa1116480:intron | 20.0% |
| !!! | ATGATTTTGTTTTGAAAGAA+TGG | - | chr7_3:64101696-64101715 | None:intergenic | 20.0% |
| !!! | AATTATTTTCTTATGGTTGA+AGG | - | chr7_3:64101743-64101762 | None:intergenic | 20.0% |
| !!! | CCTTTTTAACATACATTTTT+TGG | - | chr7_3:64102254-64102273 | None:intergenic | 20.0% |
| !! | CCAAAAAATGTATGTTAAAA+AGG | + | chr7_3:64102251-64102270 | Msa1116480:three_prime_UTR | 20.0% |
| !!! | AATTTTCTTTGGTGTTAAGA+CGG | - | chr7_3:64098888-64098907 | None:intergenic | 25.0% |
| !!! | ATTAATTCTAAGTGTTTTGG+TGG | - | chr7_3:64098958-64098977 | None:intergenic | 25.0% |
| !! | CTATAATAGACATAACCTTT+TGG | - | chr7_3:64099043-64099062 | None:intergenic | 25.0% |
| ! | CAAAAGGTTATGTCTATTAT+AGG | + | chr7_3:64099041-64099060 | Msa1116480:exon | 25.0% |
| !!! | TGAGTCTTATTTTATGCTTT+TGG | + | chr7_3:64099634-64099653 | Msa1116480:intron | 25.0% |
| !!! | TGAGACTTATTTTATGCTTT+TGG | + | chr7_3:64099683-64099702 | Msa1116480:intron | 25.0% |
| !!! | TTTGCTATTAGTTATGATGT+TGG | + | chr7_3:64099806-64099825 | Msa1116480:intron | 25.0% |
| !!! | ATAAAAGTTTTTTGTTTGGC+GGG | + | chr7_3:64099954-64099973 | Msa1116480:intron | 25.0% |
| ! | AAGGATAAGATAGAAGAAAA+AGG | - | chr7_3:64100292-64100311 | None:intergenic | 25.0% |
| !! | TTTTTCTTCTATCTTATCCT+TGG | + | chr7_3:64100291-64100310 | Msa1116480:intron | 25.0% |
| ! | TATCTTATCCTTGGATAAAT+TGG | + | chr7_3:64100300-64100319 | Msa1116480:intron | 25.0% |
| ! | TATTAAAATATGAGATGCAG+TGG | + | chr7_3:64100339-64100358 | Msa1116480:intron | 25.0% |
| ! | ATTAAAATATGAGATGCAGT+GGG | + | chr7_3:64100340-64100359 | Msa1116480:intron | 25.0% |
| !! | GACTATAGTTAGATATTTTG+AGG | + | chr7_3:64100376-64100395 | Msa1116480:intron | 25.0% |
| ! | GACTAATATACTTTCTTTAC+AGG | + | chr7_3:64100501-64100520 | Msa1116480:intron | 25.0% |
| ! | TAACTTCAAGTAAACTAAAC+TGG | + | chr7_3:64100550-64100569 | Msa1116480:intron | 25.0% |
| !!! | CATTTTATTAGAGGTATAGT+CGG | - | chr7_3:64100750-64100769 | None:intergenic | 25.0% |
| ! | AATAAGTAAGTTAGCAGTTA+GGG | + | chr7_3:64100965-64100984 | Msa1116480:intron | 25.0% |
| ! | ACTTGACAAAAAAAGAAATG+TGG | - | chr7_3:64101046-64101065 | None:intergenic | 25.0% |
| !!! | TTTTTTGTCAAGTTGTCTAA+TGG | + | chr7_3:64101053-64101072 | Msa1116480:intron | 25.0% |
| ! | CAATAAGCATAATAGAAATG+TGG | - | chr7_3:64101196-64101215 | None:intergenic | 25.0% |
| ! | TATATGCCTACAAATGTTAA+TGG | + | chr7_3:64101284-64101303 | Msa1116480:intron | 25.0% |
| !!! | GTTTTAAAAGCAAGAAATTG+TGG | + | chr7_3:64101306-64101325 | Msa1116480:intron | 25.0% |
| ! | AAAATCTATGCATAGTTCAT+TGG | - | chr7_3:64101363-64101382 | None:intergenic | 25.0% |
| !! | TTGTTTTCTCAAATATAGGA+TGG | + | chr7_3:64101533-64101552 | Msa1116480:intron | 25.0% |
| ! | GACATCCACATAATAAAATT+TGG | - | chr7_3:64101830-64101849 | None:intergenic | 25.0% |
| !!! | ACATACATTTTTTGGCATTT+TGG | - | chr7_3:64102246-64102265 | None:intergenic | 25.0% |
| ! | GCTATAATGATTAACAATGT+AGG | - | chr7_3:64102344-64102363 | None:intergenic | 25.0% |
| !! | GAATGGTGATGAATTTTCTT+TGG | - | chr7_3:64098899-64098918 | None:intergenic | 30.0% |
| GTTAAGAAAAGGAAAGAGAA+TGG | - | chr7_3:64098916-64098935 | None:intergenic | 30.0% | |
| TGAAGTTGGATGTTAAGAAA+AGG | - | chr7_3:64098927-64098946 | None:intergenic | 30.0% | |
| !! | ATGATGATGATGGCTAATTA+AGG | - | chr7_3:64098996-64099015 | None:intergenic | 30.0% |
| ! | TCACAAGATAATGATGATGA+TGG | - | chr7_3:64099006-64099025 | None:intergenic | 30.0% |
| ! | ATTTTGTCTTACAGTCCAAA+AGG | + | chr7_3:64099025-64099044 | Msa1116480:five_prime_UTR | 30.0% |
| !!! | GTTGTTTTGGGAACATAATA+AGG | + | chr7_3:64099165-64099184 | Msa1116480:CDS | 30.0% |
| AACAAAAGAAGATTAGAAGG+AGG | + | chr7_3:64099195-64099214 | Msa1116480:CDS | 30.0% | |
| AAATACCAGTCAATAACGAT+AGG | - | chr7_3:64099344-64099363 | None:intergenic | 30.0% | |
| TATATGATTAAATCTAGGGG+TGG | + | chr7_3:64099434-64099453 | Msa1116480:intron | 30.0% | |
| ! | TTGAACTCGTTTTCTATAGT+TGG | + | chr7_3:64099524-64099543 | Msa1116480:intron | 30.0% |
| GTATGTGATTTAATTAGGGA+TGG | - | chr7_3:64100125-64100144 | None:intergenic | 30.0% | |
| ! | TTAATTTCAACATGGCTTTG+AGG | + | chr7_3:64100210-64100229 | Msa1116480:intron | 30.0% |
| !! | CTTTAAAATATGAGGCATTG+CGG | + | chr7_3:64100258-64100277 | Msa1116480:intron | 30.0% |
| !! | TTTAAAATATGAGGCATTGC+GGG | + | chr7_3:64100259-64100278 | Msa1116480:intron | 30.0% |
| GATCTAATCCAATTTATCCA+AGG | - | chr7_3:64100311-64100330 | None:intergenic | 30.0% | |
| TTAAAATATGAGATGCAGTG+GGG | + | chr7_3:64100341-64100360 | Msa1116480:intron | 30.0% | |
| !!! | TTGAGGATATTTTTTTGCGT+TGG | + | chr7_3:64100393-64100412 | Msa1116480:intron | 30.0% |
| !!! | TGAGGATATTTTTTTGCGTT+GGG | + | chr7_3:64100394-64100413 | Msa1116480:intron | 30.0% |
| TTCAAGTAAACTAAACTGGA+AGG | + | chr7_3:64100554-64100573 | Msa1116480:intron | 30.0% | |
| ACTTTAATGCACCATATTGT+GGG | - | chr7_3:64100697-64100716 | None:intergenic | 30.0% | |
| AACTTTAATGCACCATATTG+TGG | - | chr7_3:64100698-64100717 | None:intergenic | 30.0% | |
| ! | ATCGGAGTTCATTTTATTAG+AGG | - | chr7_3:64100759-64100778 | None:intergenic | 30.0% |
| TCTAATAAAATGAACTCCGA+TGG | + | chr7_3:64100758-64100777 | Msa1116480:intron | 30.0% | |
| CAATAAGTAAGTTAGCAGTT+AGG | + | chr7_3:64100964-64100983 | Msa1116480:intron | 30.0% | |
| AGAAATGTGGATAGATGTAT+TGG | - | chr7_3:64101033-64101052 | None:intergenic | 30.0% | |
| ! | TATGCATAGTTCATTGGTTA+AGG | - | chr7_3:64101357-64101376 | None:intergenic | 30.0% |
| TTGCATAATTGAATTCCCAT+TGG | - | chr7_3:64101768-64101787 | None:intergenic | 30.0% | |
| ! | CAGAGCCAAATTTTATTATG+TGG | + | chr7_3:64101822-64101841 | Msa1116480:intron | 30.0% |
| ! | AGTAGATGCTTGATATTTTC+TGG | + | chr7_3:64101895-64101914 | Msa1116480:intron | 30.0% |
| GAATACACTGTTCATCTCTA+TGG | - | chr7_3:64099100-64099119 | None:intergenic | 35.0% | |
| !! | ATTCCTCAATGCTTTTCAAG+TGG | + | chr7_3:64099116-64099135 | Msa1116480:CDS | 35.0% |
| ! | TTGTGTCGTAAGAGTTGTTT+TGG | + | chr7_3:64099152-64099171 | Msa1116480:CDS | 35.0% |
| !! | TGTGTCGTAAGAGTTGTTTT+GGG | + | chr7_3:64099153-64099172 | Msa1116480:CDS | 35.0% |
| !! | CTTGGTCTTTTTGACAAATC+TGG | - | chr7_3:64099245-64099264 | None:intergenic | 35.0% |
| AAGACCAAGTTCAGTAGAAA+TGG | + | chr7_3:64099256-64099275 | Msa1116480:CDS | 35.0% | |
| AAATTGAAGCACGAGTTAAG+CGG | - | chr7_3:64099607-64099626 | None:intergenic | 35.0% | |
| TTTAATTAGGGATGGCAAAG+CGG | - | chr7_3:64100117-64100136 | None:intergenic | 35.0% | |
| GGTTACGGTTAATTTCAACA+TGG | + | chr7_3:64100202-64100221 | Msa1116480:intron | 35.0% | |
| !! | TTAAAATATGAGGCATTGCG+GGG | + | chr7_3:64100260-64100279 | Msa1116480:intron | 35.0% |
| TAGTCCATTCAAATGTCTGT+GGG | - | chr7_3:64100486-64100505 | None:intergenic | 35.0% | |
| TTAGTCCATTCAAATGTCTG+TGG | - | chr7_3:64100487-64100506 | None:intergenic | 35.0% | |
| AAACTGGAAGGTTTACTTGA+AGG | + | chr7_3:64100566-64100585 | Msa1116480:intron | 35.0% | |
| GAAGGTTTACTTGAAGGTTA+TGG | + | chr7_3:64100572-64100591 | Msa1116480:intron | 35.0% | |
| AGTTTGAACTCAATTCAGAG+AGG | + | chr7_3:64100714-64100733 | Msa1116480:intron | 35.0% | |
| AATAAAATGAACTCCGATGG+AGG | + | chr7_3:64100761-64100780 | Msa1116480:intron | 35.0% | |
| ATAAAATGAACTCCGATGGA+GGG | + | chr7_3:64100762-64100781 | Msa1116480:intron | 35.0% | |
| !! | GCTAGAATTCACCTTTTTCA+AGG | + | chr7_3:64101075-64101094 | Msa1116480:intron | 35.0% |
| CCACTTATTCACCTTGAAAA+AGG | - | chr7_3:64101089-64101108 | None:intergenic | 35.0% | |
| !!! | CCTTTTTCAAGGTGAATAAG+TGG | + | chr7_3:64101086-64101105 | Msa1116480:intron | 35.0% |
| ACATCCATTGTTATATGCAG+GGG | - | chr7_3:64101135-64101154 | None:intergenic | 35.0% | |
| GACATCCATTGTTATATGCA+GGG | - | chr7_3:64101136-64101155 | None:intergenic | 35.0% | |
| AGACATCCATTGTTATATGC+AGG | - | chr7_3:64101137-64101156 | None:intergenic | 35.0% | |
| TGCCAACTAAGTTATACTCA+CGG | + | chr7_3:64101158-64101177 | Msa1116480:intron | 35.0% | |
| ! | ATGTGTGATACCAATTTTGC+AGG | + | chr7_3:64101488-64101507 | Msa1116480:intron | 35.0% |
| GCTTCAAATAGATGCATTTC+CGG | - | chr7_3:64101569-64101588 | None:intergenic | 35.0% | |
| ! | CATCTATTTGAAGCCAAAGT+TGG | + | chr7_3:64101575-64101594 | Msa1116480:CDS | 35.0% |
| ! | GCAGCTAATTTTTCCAACTT+TGG | - | chr7_3:64101591-64101610 | None:intergenic | 35.0% |
| !! | ACACTAGTGACTAGTTTACT+TGG | - | chr7_3:64101625-64101644 | None:intergenic | 35.0% |
| ! | CTGAATTGTTGGCATTTTCT+GGG | - | chr7_3:64101984-64102003 | None:intergenic | 35.0% |
| GAGATGAAAGAAGAAGTGAT+TGG | + | chr7_3:64102123-64102142 | Msa1116480:CDS | 35.0% | |
| ATGAAAGAAGAAGTGATTGG+AGG | + | chr7_3:64102126-64102145 | Msa1116480:CDS | 35.0% | |
| !! | TTTTTGGCATTTTGGAGAGA+GGG | - | chr7_3:64102238-64102257 | None:intergenic | 35.0% |
| !!! | TTTTTTGGCATTTTGGAGAG+AGG | - | chr7_3:64102239-64102258 | None:intergenic | 35.0% |
| !!! | TCTAAGTGTTTTGGTGGACA+AGG | - | chr7_3:64098952-64098971 | None:intergenic | 40.0% |
| !!! | TCAATGCTTTTCAAGTGGCA+GGG | + | chr7_3:64099121-64099140 | Msa1116480:CDS | 40.0% |
| TAGAAGGAGGAATTTACGTG+TGG | + | chr7_3:64099208-64099227 | Msa1116480:CDS | 40.0% | |
| ATTTACGTGTGGAAGCTATG+TGG | + | chr7_3:64099219-64099238 | Msa1116480:CDS | 40.0% | |
| GCTTCCATTTCTACTGAACT+TGG | - | chr7_3:64099263-64099282 | None:intergenic | 40.0% | |
| TAAATCTAGGGGTGGCAAAA+CGG | + | chr7_3:64099442-64099461 | Msa1116480:intron | 40.0% | |
| ! | CTCGTTTTCTATAGTTGGCT+CGG | + | chr7_3:64099529-64099548 | Msa1116480:intron | 40.0% |
| CGTCTCGTCTCGTTAAAATA+CGG | + | chr7_3:64099554-64099573 | Msa1116480:intron | 40.0% | |
| GTCTCGTCTCGTTAAAATAC+GGG | + | chr7_3:64099555-64099574 | Msa1116480:intron | 40.0% | |
| TCTCGTCTCGTTAAAATACG+GGG | + | chr7_3:64099556-64099575 | Msa1116480:intron | 40.0% | |
| AATTGAAGCACGAGTTAAGC+GGG | - | chr7_3:64099606-64099625 | None:intergenic | 40.0% | |
| CTCGGTCACAAAATTTGACT+CGG | + | chr7_3:64100031-64100050 | Msa1116480:intron | 40.0% | |
| !! | TCGTCTTGTCTCGTTTTTAG+CGG | + | chr7_3:64100055-64100074 | Msa1116480:intron | 40.0% |
| TTAATTAGGGATGGCAAAGC+GGG | - | chr7_3:64100116-64100135 | None:intergenic | 40.0% | |
| AGGCTAAGGATGACATACTT+TGG | - | chr7_3:64100163-64100182 | None:intergenic | 40.0% | |
| AGTCCATTCAAATGTCTGTG+GGG | - | chr7_3:64100485-64100504 | None:intergenic | 40.0% | |
| AGAGTAGACTCAACTCTCAT+TGG | - | chr7_3:64100674-64100693 | None:intergenic | 40.0% | |
| TTTACACAAGTTCCCTCCAT+CGG | - | chr7_3:64100777-64100796 | None:intergenic | 40.0% | |
| GCCAACTAAGTTATACTCAC+GGG | + | chr7_3:64101159-64101178 | Msa1116480:intron | 40.0% | |
| CCAACTAAGTTATACTCACG+GGG | + | chr7_3:64101160-64101179 | Msa1116480:intron | 40.0% | |
| ! | TGTGATACCAATTTTGCAGG+TGG | + | chr7_3:64101491-64101510 | Msa1116480:intron | 40.0% |
| AACAAGTCCACCTGCAAAAT+TGG | - | chr7_3:64101501-64101520 | None:intergenic | 40.0% | |
| TCAAATATAGGATGGCTGCT+TGG | + | chr7_3:64101541-64101560 | Msa1116480:intron | 40.0% | |
| ! | CCTGAATTGTTGGCATTTTC+TGG | - | chr7_3:64101985-64102004 | None:intergenic | 40.0% |
| CCAGAAAATGCCAACAATTC+AGG | + | chr7_3:64101982-64102001 | Msa1116480:intron | 40.0% | |
| GCTTGAATTGTTTGCAGCTT+TGG | + | chr7_3:64102091-64102110 | Msa1116480:intron | 40.0% | |
| !! | TGTTTGCAGCTTTGGAAAGA+TGG | + | chr7_3:64102099-64102118 | Msa1116480:intron | 40.0% |
| TGTTAAGACGGTGTGAAGCA+TGG | - | chr7_3:64098876-64098895 | None:intergenic | 45.0% | |
| !! | CTGCCACTTGAAAAGCATTG+AGG | - | chr7_3:64099122-64099141 | None:intergenic | 45.0% |
| !!! | CTCAATGCTTTTCAAGTGGC+AGG | + | chr7_3:64099120-64099139 | Msa1116480:CDS | 45.0% |
| CTGAGCCTATCGTTATTGAC+TGG | + | chr7_3:64099336-64099355 | Msa1116480:CDS | 45.0% | |
| AAATCTAGGGGTGGCAAAAC+GGG | + | chr7_3:64099443-64099462 | Msa1116480:intron | 45.0% | |
| CCAAAAATAGCGAGCCAAAC+AGG | - | chr7_3:64099487-64099506 | None:intergenic | 45.0% | |
| !! | CCTGTTTGGCTCGCTATTTT+TGG | + | chr7_3:64099484-64099503 | Msa1116480:intron | 45.0% |
| !!! | GTTTGGCTCGCTATTTTTGG+CGG | + | chr7_3:64099487-64099506 | Msa1116480:intron | 45.0% |
| !!! | TTTGGCTCGCTATTTTTGGC+GGG | + | chr7_3:64099488-64099507 | Msa1116480:intron | 45.0% |
| !!! | AAGTTTTTTGTTTGGCGGGC+CGG | + | chr7_3:64099958-64099977 | Msa1116480:intron | 45.0% |
| !!! | CGTCTTGTCTCGTTTTTAGC+GGG | + | chr7_3:64100056-64100075 | Msa1116480:intron | 45.0% |
| !!! | TCGTTTTTAGCGGGCTTAGA+TGG | + | chr7_3:64100065-64100084 | Msa1116480:intron | 45.0% |
| !!! | CGTTTTTAGCGGGCTTAGAT+GGG | + | chr7_3:64100066-64100085 | Msa1116480:intron | 45.0% |
| !!! | GTTTTTAGCGGGCTTAGATG+GGG | + | chr7_3:64100067-64100086 | Msa1116480:intron | 45.0% |
| ! | GATACAGATTGTGAGGGTGT+GGG | - | chr7_3:64100457-64100476 | None:intergenic | 45.0% |
| AGATACAGATTGTGAGGGTG+TGG | - | chr7_3:64100458-64100477 | None:intergenic | 45.0% | |
| GGGTGAGATACAGATTGTGA+GGG | - | chr7_3:64100463-64100482 | None:intergenic | 45.0% | |
| TCCATTCAAATGTCTGTGGG+GGG | - | chr7_3:64100483-64100502 | None:intergenic | 45.0% | |
| GTCCATTCAAATGTCTGTGG+GGG | - | chr7_3:64100484-64100503 | None:intergenic | 45.0% | |
| GAGTCTACTCTCCCACAATA+TGG | + | chr7_3:64100683-64100702 | Msa1116480:intron | 45.0% | |
| GTAAGTTAGCAGTTAGGGTG+AGG | + | chr7_3:64100970-64100989 | Msa1116480:intron | 45.0% | |
| ! | AGGTGAATAAGTGGAGTGTC+TGG | + | chr7_3:64101095-64101114 | Msa1116480:intron | 45.0% |
| ! | GGTGAATAAGTGGAGTGTCT+GGG | + | chr7_3:64101096-64101115 | Msa1116480:intron | 45.0% |
| ATTGTTATATGCAGGGGCCA+GGG | - | chr7_3:64101129-64101148 | None:intergenic | 45.0% | |
| CCCCGTGAGTATAACTTAGT+TGG | - | chr7_3:64101163-64101182 | None:intergenic | 45.0% | |
| AGAAGTGATTGGAGGCCATA+AGG | + | chr7_3:64102134-64102153 | Msa1116480:CDS | 45.0% | |
| GAAGTGATTGGAGGCCATAA+GGG | + | chr7_3:64102135-64102154 | Msa1116480:CDS | 45.0% | |
| ! | TGGTGGACAAGGCATGAAGT+TGG | - | chr7_3:64098941-64098960 | None:intergenic | 50.0% |
| AAATAGCGAGCCAAACAGGC+CGG | - | chr7_3:64099483-64099502 | None:intergenic | 50.0% | |
| CGTCTCGTTAAAATACGGGG+CGG | + | chr7_3:64099559-64099578 | Msa1116480:intron | 50.0% | |
| GTCTCGTTAAAATACGGGGC+GGG | + | chr7_3:64099560-64099579 | Msa1116480:intron | 50.0% | |
| GGGGTGAGATACAGATTGTG+AGG | - | chr7_3:64100464-64100483 | None:intergenic | 50.0% | |
| ACCCCCCACAGACATTTGAA+TGG | + | chr7_3:64100479-64100498 | Msa1116480:intron | 50.0% | |
| AGGGTGAGGTAGTTAGCTGT+TGG | + | chr7_3:64100984-64101003 | Msa1116480:intron | 50.0% | |
| CATTGTTATATGCAGGGGCC+AGG | - | chr7_3:64101130-64101149 | None:intergenic | 50.0% | |
| CTGGCCCCTGCATATAACAA+TGG | + | chr7_3:64101128-64101147 | Msa1116480:intron | 50.0% | |
| CCACGCTTGACTAATGTCTG+AGG | - | chr7_3:64101862-64101881 | None:intergenic | 50.0% | |
| CCTCAGACATTAGTCAAGCG+TGG | + | chr7_3:64101859-64101878 | Msa1116480:CDS | 50.0% | |
| TGAGGACGCACCTGAATTGT+TGG | - | chr7_3:64101995-64102014 | None:intergenic | 50.0% | |
| ! | CAATGACTAGCCAGCCCTTA+TGG | - | chr7_3:64102152-64102171 | None:intergenic | 50.0% |
| GTTAAAATACGGGGCGGGCA+CGG | + | chr7_3:64099565-64099584 | Msa1116480:intron | 55.0% | |
| TTAAAATACGGGGCGGGCAC+GGG | + | chr7_3:64099566-64099585 | Msa1116480:intron | 55.0% | |
| !! | TTAGTGGCGGACTTGCGAGT+TGG | - | chr7_3:64099988-64100007 | None:intergenic | 55.0% |
| CTCGCAAGTCCGCCACTAAA+CGG | + | chr7_3:64099989-64100008 | Msa1116480:intron | 55.0% | |
| TCGCAAGTCCGCCACTAAAC+GGG | + | chr7_3:64099990-64100009 | Msa1116480:intron | 55.0% | |
| ! | GCGGGGTGAGATTTTGGACT+CGG | + | chr7_3:64100013-64100032 | Msa1116480:intron | 55.0% |
| !! | TTTAGCGGGCTTAGATGGGG+CGG | + | chr7_3:64100070-64100089 | Msa1116480:intron | 55.0% |
| TTAGATGGGGCGGGCCTAAA+TGG | + | chr7_3:64100080-64100099 | Msa1116480:intron | 55.0% | |
| TAGATGGGGCGGGCCTAAAT+GGG | + | chr7_3:64100081-64100100 | Msa1116480:intron | 55.0% | |
| ! | AGTGTCTGGGATTCGAACCC+TGG | + | chr7_3:64101109-64101128 | Msa1116480:intron | 55.0% |
| !! | ATAGGATGGCTGCTTGGTGC+CGG | + | chr7_3:64101547-64101566 | Msa1116480:intron | 55.0% |
| TGATTGGAGGCCATAAGGGC+TGG | + | chr7_3:64102139-64102158 | Msa1116480:CDS | 55.0% | |
| TAAAATACGGGGCGGGCACG+GGG | + | chr7_3:64099567-64099586 | Msa1116480:intron | 60.0% | |
| GAAGCACGAGTTAAGCGGGC+CGG | - | chr7_3:64099602-64099621 | None:intergenic | 60.0% | |
| CGCAAGTCCGCCACTAAACG+GGG | + | chr7_3:64099991-64100010 | Msa1116480:intron | 60.0% | |
| AAGTCCGCCACTAAACGGGG+CGG | + | chr7_3:64099994-64100013 | Msa1116480:intron | 60.0% | |
| ! | AACGGGGCGGGGTGAGATTT+TGG | + | chr7_3:64100007-64100026 | Msa1116480:intron | 60.0% |
| !! | TTAGCGGGCTTAGATGGGGC+GGG | + | chr7_3:64100071-64100090 | Msa1116480:intron | 60.0% |
| AGATGGGGCGGGCCTAAATG+GGG | + | chr7_3:64100082-64100101 | Msa1116480:intron | 60.0% | |
| TTAGGGATGGCAAAGCGGGC+CGG | - | chr7_3:64100112-64100131 | None:intergenic | 60.0% | |
| GCAAAACGGGTCTGACCCGC+CGG | + | chr7_3:64099456-64099475 | Msa1116480:intron | 65.0% | |
| CAAAACGGGTCTGACCCGCC+GGG | + | chr7_3:64099457-64099476 | Msa1116480:intron | 65.0% | |
| !! | TGGCGGACTTGCGAGTTGGC+GGG | - | chr7_3:64099984-64100003 | None:intergenic | 65.0% |
| !! | GTGGCGGACTTGCGAGTTGG+CGG | - | chr7_3:64099985-64100004 | None:intergenic | 65.0% |
| AGTCCGCCACTAAACGGGGC+GGG | + | chr7_3:64099995-64100014 | Msa1116480:intron | 65.0% | |
| TCTCACCCCGCCCCGTTTAG+TGG | - | chr7_3:64100004-64100023 | None:intergenic | 65.0% | |
| ! | GGACTTGCGAGTTGGCGGGC+CGG | - | chr7_3:64099980-64099999 | None:intergenic | 70.0% |
| GTCCGCCACTAAACGGGGCG+GGG | + | chr7_3:64099996-64100015 | Msa1116480:intron | 70.0% | |
| CACCCCGCCCCGTTTAGTGG+CGG | - | chr7_3:64100001-64100020 | None:intergenic | 70.0% | |
| TGGGGCGGGCCTAAATGGGG+CGG | + | chr7_3:64100085-64100104 | Msa1116480:intron | 70.0% | |
| AGCCAAACAGGCCGGCCCGG+CGG | - | chr7_3:64099475-64099494 | None:intergenic | 75.0% | |
| GCGAGCCAAACAGGCCGGCC+CGG | - | chr7_3:64099478-64099497 | None:intergenic | 75.0% | |
| AATACGGGGCGGGCACGGGG+CGG | + | chr7_3:64099570-64099589 | Msa1116480:intron | 75.0% | |
| GGGGCGGGCCTAAATGGGGC+GGG | + | chr7_3:64100086-64100105 | Msa1116480:intron | 75.0% | |
| CGGGCCTAAATGGGGCGGGC+CGG | + | chr7_3:64100090-64100109 | Msa1116480:intron | 75.0% | |
| ! | ACGGGTCTGACCCGCCGGGC+CGG | + | chr7_3:64099461-64099480 | Msa1116480:intron | 80.0% |
| ! | ACCCGCCGGGCCGGCCTGTT+TGG | + | chr7_3:64099470-64099489 | Msa1116480:intron | 80.0% |
| ! | GCCAAACAGGCCGGCCCGGC+GGG | - | chr7_3:64099474-64099493 | None:intergenic | 80.0% |
| ! | ATACGGGGCGGGCACGGGGC+GGG | + | chr7_3:64099571-64099590 | Msa1116480:intron | 80.0% |
| ! | CGGGCCGGCCCGCCCCATTT+AGG | - | chr7_3:64100097-64100116 | None:intergenic | 80.0% |
| ! | TACGGGGCGGGCACGGGGCG+GGG | + | chr7_3:64099572-64099591 | Msa1116480:intron | 85.0% |
| ! | GGGGCGGGCACGGGGCGGGG+CGG | + | chr7_3:64099575-64099594 | Msa1116480:intron | 95.0% |
| ! | GGGCGGGCACGGGGCGGGGC+GGG | + | chr7_3:64099576-64099595 | Msa1116480:intron | 95.0% |
| ! | GGGCACGGGGCGGGGCGGGC+CGG | + | chr7_3:64099580-64099599 | Msa1116480:intron | 95.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_3 | gene | 64098857 | 64102372 | 64098857 | ID=Msa1116480;Name=Msa1116480 |
| chr7_3 | mRNA | 64098857 | 64102372 | 64098857 | ID=Msa1116480-mRNA-1;Parent=Msa1116480;Name=Msa1116480-mRNA-1;_AED=0.06;_eAED=0.06;_QI=193|1|1|1|1|1|5|166|188 |
| chr7_3 | exon | 64098857 | 64099357 | 64098857 | ID=Msa1116480-mRNA-1:exon:15153;Parent=Msa1116480-mRNA-1 |
| chr7_3 | exon | 64101551 | 64101625 | 64101551 | ID=Msa1116480-mRNA-1:exon:15154;Parent=Msa1116480-mRNA-1 |
| chr7_3 | exon | 64101825 | 64101891 | 64101825 | ID=Msa1116480-mRNA-1:exon:15155;Parent=Msa1116480-mRNA-1 |
| chr7_3 | exon | 64101986 | 64102003 | 64101986 | ID=Msa1116480-mRNA-1:exon:15156;Parent=Msa1116480-mRNA-1 |
| chr7_3 | exon | 64102108 | 64102372 | 64102108 | ID=Msa1116480-mRNA-1:exon:15157;Parent=Msa1116480-mRNA-1 |
| chr7_3 | five_prime_UTR | 64098857 | 64099049 | 64098857 | ID=Msa1116480-mRNA-1:five_prime_utr;Parent=Msa1116480-mRNA-1 |
| chr7_3 | CDS | 64099050 | 64099357 | 64099050 | ID=Msa1116480-mRNA-1:cds;Parent=Msa1116480-mRNA-1 |
| chr7_3 | CDS | 64101551 | 64101625 | 64101551 | ID=Msa1116480-mRNA-1:cds;Parent=Msa1116480-mRNA-1 |
| chr7_3 | CDS | 64101825 | 64101891 | 64101825 | ID=Msa1116480-mRNA-1:cds;Parent=Msa1116480-mRNA-1 |
| chr7_3 | CDS | 64101986 | 64102003 | 64101986 | ID=Msa1116480-mRNA-1:cds;Parent=Msa1116480-mRNA-1 |
| chr7_3 | CDS | 64102108 | 64102206 | 64102108 | ID=Msa1116480-mRNA-1:cds;Parent=Msa1116480-mRNA-1 |
| chr7_3 | three_prime_UTR | 64102207 | 64102372 | 64102207 | ID=Msa1116480-mRNA-1:three_prime_utr;Parent=Msa1116480-mRNA-1 |
| Gene Sequence |
| Protein sequence |
