Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1162730 | XP_003625285.1 | 97.872 | 188 | 3 | 1 | 1 | 188 | 1 | 187 | 4.66e-133 | 380 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1162730 | sp|Q9FG36|TRL31_ARATH | 61.728 | 162 | 56 | 3 | 31 | 188 | 51 | 210 | 1.34e-68 | 211 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1162730 | G7KVF9 | 97.872 | 188 | 3 | 1 | 1 | 188 | 1 | 187 | 2.22e-133 | 380 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0043940 | Msa1162730 | 0.812385 | 4.354415e-51 | -8.615850e-47 |
| Msa0076720 | Msa1162730 | 0.866936 | 1.980145e-65 | -8.615850e-47 |
| Msa0092710 | Msa1162730 | 0.807361 | 5.247125e-50 | -8.615850e-47 |
| Msa0607340 | Msa1162730 | -0.815707 | 8.054734e-52 | -8.615850e-47 |
| Msa0647450 | Msa1162730 | -0.822275 | 2.584202e-53 | -8.615850e-47 |
| Msa0704220 | Msa1162730 | 0.827167 | 1.816664e-54 | -8.615850e-47 |
| Msa0769830 | Msa1162730 | 0.824294 | 8.724195e-54 | -8.615850e-47 |
| Msa0806720 | Msa1162730 | 0.809154 | 2.176676e-50 | -8.615850e-47 |
| Msa0806760 | Msa1162730 | 0.813286 | 2.763628e-51 | -8.615850e-47 |
| Msa0809300 | Msa1162730 | 0.801450 | 8.953345e-49 | -8.615850e-47 |
| Msa0124660 | Msa1162730 | 0.889131 | 3.186028e-73 | -8.615850e-47 |
| Msa0168640 | Msa1162730 | -0.821844 | 3.252231e-53 | -8.615850e-47 |
| Msa0182640 | Msa1162730 | 0.803227 | 3.854991e-49 | -8.615850e-47 |
| Msa0194970 | Msa1162730 | 0.803535 | 3.328705e-49 | -8.615850e-47 |
| Msa0382590 | Msa1162730 | 0.816390 | 5.667269e-52 | -8.615850e-47 |
| Msa0432720 | Msa1162730 | 0.851360 | 9.336482e-61 | -8.615850e-47 |
| Msa1030570 | Msa1162730 | -0.813728 | 2.210316e-51 | -8.615850e-47 |
| Msa1075340 | Msa1162730 | 0.890922 | 6.356967e-74 | -8.615850e-47 |
| Msa0275030 | Msa1162730 | 0.829113 | 6.173566e-55 | -8.615850e-47 |
| Msa1116480 | Msa1162730 | 0.836671 | 8.162557e-57 | -8.615850e-47 |
| Msa1162730 | Msa1293050 | 0.827926 | 1.194450e-54 | -8.615850e-47 |
| Msa1162730 | Msa1354090 | 0.810902 | 9.149567e-51 | -8.615850e-47 |
| Msa1162730 | Msa1395230 | -0.814744 | 1.317982e-51 | -8.615850e-47 |
| Msa1162730 | Msa1432640 | 0.806230 | 9.101080e-50 | -8.615850e-47 |
| Msa1162730 | Msa1439120 | 0.812466 | 4.180134e-51 | -8.615850e-47 |
| Msa1162730 | Msa1440220 | 0.807196 | 5.687568e-50 | -8.615850e-47 |
| Msa1162730 | Msa1455660 | 0.814742 | 1.319222e-51 | -8.615850e-47 |
| Msa0525270 | Msa1162730 | 0.833177 | 6.195777e-56 | -8.615850e-47 |
| Msa0525280 | Msa1162730 | 0.835647 | 1.485428e-56 | -8.615850e-47 |
| Msa0553220 | Msa1162730 | -0.833894 | 4.102221e-56 | -8.615850e-47 |
| Msa0562300 | Msa1162730 | -0.808332 | 3.262632e-50 | -8.615850e-47 |
| Msa0848760 | Msa1162730 | 0.816284 | 5.986482e-52 | -8.615850e-47 |
| Msa0945960 | Msa1162730 | 0.805810 | 1.115366e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1162730 | MtrunA17_Chr7g0258871 | 97.872 | 188 | 3 | 1 | 1 | 188 | 1 | 187 | 4.28e-137 | 380 |
| Msa1162730 | MtrunA17_Chr1g0171001 | 50.450 | 111 | 52 | 1 | 76 | 186 | 79 | 186 | 3.32e-34 | 119 |
| Msa1162730 | MtrunA17_Chr3g0125821 | 25.143 | 175 | 108 | 5 | 21 | 188 | 15 | 173 | 7.32e-13 | 63.5 |
| Msa1162730 | MtrunA17_Chr8g0360031 | 28.283 | 99 | 66 | 2 | 72 | 170 | 69 | 162 | 6.35e-12 | 61.2 |
| Msa1162730 | MtrunA17_Chr5g0404831 | 28.829 | 111 | 72 | 3 | 78 | 188 | 12 | 115 | 5.67e-11 | 57.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1162730 | AT5G06690.1 | 61.728 | 162 | 56 | 3 | 31 | 188 | 51 | 210 | 1.36e-69 | 211 |
| Msa1162730 | AT5G04260.1 | 57.851 | 121 | 51 | 0 | 66 | 186 | 68 | 188 | 1.65e-46 | 151 |
| Msa1162730 | AT5G06690.2 | 54.839 | 124 | 50 | 3 | 31 | 150 | 51 | 172 | 7.86e-43 | 142 |
| Msa1162730 | AT5G06690.4 | 54.839 | 124 | 50 | 3 | 31 | 150 | 51 | 172 | 9.38e-43 | 142 |
| Msa1162730 | AT5G06690.3 | 46.078 | 102 | 49 | 3 | 31 | 128 | 51 | 150 | 1.79e-26 | 99.0 |
| Msa1162730 | AT3G15360.1 | 30.303 | 99 | 64 | 2 | 72 | 170 | 84 | 177 | 1.84e-12 | 63.5 |
| Msa1162730 | AT1G19730.1 | 34.831 | 89 | 53 | 2 | 84 | 172 | 20 | 103 | 1.86e-11 | 58.9 |
| Msa1162730 | AT1G45145.1 | 29.204 | 113 | 73 | 3 | 75 | 187 | 6 | 111 | 4.89e-11 | 57.8 |
Find 41 sgRNAs with CRISPR-Local
Find 160 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GACATCCACATAATAAAATT+TGG | 0.205819 | 7_4:-53522725 | None:intergenic |
| GCTTCAAATAGATGCATTTC+CGG | 0.251648 | 7_4:-53522464 | None:intergenic |
| CTATAATAGACATAACCTTT+TGG | 0.305549 | 7_4:-53520621 | None:intergenic |
| CAAAAGGTTATGTCTATTAT+AGG | 0.311384 | 7_4:+53520622 | Msa1162730:exon |
| CCAGAAAATGCCAACAATTC+AGG | 0.318570 | 7_4:+53522880 | Msa1162730:intron |
| ATGATTAATTCTAAATGTTT+TGG | 0.323562 | 7_4:-53520534 | None:intergenic |
| CAATGACTAGCCAGCCCTTA+TGG | 0.332185 | 7_4:-53523047 | None:intergenic |
| TTGTGTCGTAAGAGTTGTTT+TGG | 0.332377 | 7_4:+53520733 | Msa1162730:CDS |
| AGTAATAAAAGAAATAAATT+AGG | 0.332695 | 7_4:-53523110 | None:intergenic |
| AAGACCAAGTTCAATAGAAA+TGG | 0.379592 | 7_4:+53520837 | Msa1162730:CDS |
| TGTTTGCAGCTTTGGAAAGA+TGG | 0.388102 | 7_4:+53522997 | Msa1162730:intron |
| ATGATGATGATGGCTAATTA+AGG | 0.389361 | 7_4:-53520569 | None:intergenic |
| CTCAGTGCTTTGCAAGTGGC+AGG | 0.393125 | 7_4:+53520701 | Msa1162730:CDS |
| CATCTATTTGAAGCCAAAGT+TGG | 0.425150 | 7_4:+53522473 | Msa1162730:CDS |
| GAAGTGATTGGAGGCCATAA+GGG | 0.439766 | 7_4:+53523033 | Msa1162730:CDS |
| GCTTCCATTTCTATTGAACT+TGG | 0.444492 | 7_4:-53520841 | None:intergenic |
| GCTATAATGATTAACAATGT+AGG | 0.446247 | 7_4:-53523241 | None:intergenic |
| AGAAGTGATTGGAGGCCATA+AGG | 0.448140 | 7_4:+53523032 | Msa1162730:CDS |
| TGAAGTTGGATGCTAAGAAA+TGG | 0.452883 | 7_4:-53520500 | None:intergenic |
| GAGATGAAAGAAGAAGTGAT+TGG | 0.459326 | 7_4:+53523021 | Msa1162730:CDS |
| TGAGGACGCACCTGAATTGT+TGG | 0.460604 | 7_4:-53522890 | None:intergenic |
| ATAGGATGGCTGCTTGGTGC+CGG | 0.493739 | 7_4:+53522445 | Msa1162730:intron |
| TTTGTCTTACAGTATCCAAA+AGG | 0.512666 | 7_4:+53520606 | Msa1162730:five_prime_UTR |
| TGATTGGAGGCCATAAGGGC+TGG | 0.518680 | 7_4:+53523037 | Msa1162730:CDS |
| GCTAAGAAATGGAAAGAGAA+TGG | 0.529176 | 7_4:-53520489 | None:intergenic |
| TCAAATATAGGATGGCTGCT+TGG | 0.529801 | 7_4:+53522439 | Msa1162730:intron |
| TCAGTGCTTTGCAAGTGGCA+GGG | 0.535743 | 7_4:+53520702 | Msa1162730:CDS |
| ATTCCTCAGTGCTTTGCAAG+TGG | 0.552145 | 7_4:+53520697 | Msa1162730:CDS |
| CAAGATAATGATGATGATGA+TGG | 0.568892 | 7_4:-53520579 | None:intergenic |
| CCGAGCCTATCGTTATTGAC+TGG | 0.584386 | 7_4:+53520917 | Msa1162730:CDS |
| TGGTGGACAAGGCATGAAGT+TGG | 0.584521 | 7_4:-53520514 | None:intergenic |
| ATCATATATATAAAACAAAG+AGG | 0.592865 | 7_4:+53523205 | Msa1162730:three_prime_UTR |
| ATGAAAGAAGAAGTGATTGG+AGG | 0.597943 | 7_4:+53523024 | Msa1162730:CDS |
| TAGAAGGAAGAATTTACGTG+TGG | 0.602557 | 7_4:+53520789 | Msa1162730:CDS |
| CCAGTCAATAACGATAGGCT+CGG | 0.606486 | 7_4:-53520917 | None:intergenic |
| AAATACCAGTCAATAACGAT+AGG | 0.607970 | 7_4:-53520922 | None:intergenic |
| CCACGCTTGACTAATGTCTG+AGG | 0.613310 | 7_4:-53522757 | None:intergenic |
| CCTCAGACATTAGTCAAGCG+TGG | 0.642739 | 7_4:+53522757 | Msa1162730:CDS |
| ATTTACGTGTGGAAGCTATG+TGG | 0.678095 | 7_4:+53520800 | Msa1162730:CDS |
| CTGCCACTTGCAAAGCACTG+AGG | 0.688803 | 7_4:-53520700 | None:intergenic |
| GAATACACTGTTCATCTCTG+TGG | 0.691310 | 7_4:-53520678 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CATACAATAATAAAATTTAA+AGG | - | chr7_4:53521073-53521092 | None:intergenic | 10.0% |
| !!! | CTTTAAATTTTATTATTGTA+TGG | + | chr7_4:53521071-53521090 | Msa1162730:intron | 10.0% |
| !!! | TATACCTATATATAAAATTT+TGG | - | chr7_4:53522365-53522384 | None:intergenic | 10.0% |
| !! | TATATAGATTAATTTAATTG+AGG | - | chr7_4:53522911-53522930 | None:intergenic | 10.0% |
| !!! | ATTTTATTTTTCTTTTATTG+TGG | - | chr7_4:53522940-53522959 | None:intergenic | 10.0% |
| !! | AGTAATAAAAGAAATAAATT+AGG | - | chr7_4:53523113-53523132 | None:intergenic | 10.0% |
| !!! | ATGATTAATTCTAAATGTTT+TGG | - | chr7_4:53520537-53520556 | None:intergenic | 15.0% |
| !! | GTAAAAATAATCATTATACA+AGG | - | chr7_4:53520965-53520984 | None:intergenic | 15.0% |
| !! | ATAATAAAATTTAAAGGCTA+AGG | - | chr7_4:53521067-53521086 | None:intergenic | 15.0% |
| !!! | ATTTTATTATTGTATGGTTA+CGG | + | chr7_4:53521077-53521096 | Msa1162730:intron | 15.0% |
| !! | AAACAAAGTTAAAGTAAATA+TGG | - | chr7_4:53521126-53521145 | None:intergenic | 15.0% |
| !!! | TTGTTTAACTTTAAAATATG+AGG | + | chr7_4:53521140-53521159 | Msa1162730:intron | 15.0% |
| !! | TAAGTTCTTATTAAAATATG+AGG | + | chr7_4:53521220-53521239 | Msa1162730:intron | 15.0% |
| !! | TACTTATTGTAACATAAATA+AGG | - | chr7_4:53521853-53521872 | None:intergenic | 15.0% |
| !!! | TTGCAATATTTTAATAACAT+TGG | + | chr7_4:53522230-53522249 | Msa1162730:intron | 15.0% |
| !! | GTTATAAATTACAAATGAAA+AGG | - | chr7_4:53522305-53522324 | None:intergenic | 15.0% |
| !!! | ATTGGTTAATTATTTTCTTA+TGG | - | chr7_4:53522648-53522667 | None:intergenic | 15.0% |
| !! | ATAAGAAAATAATTAACCAA+TGG | + | chr7_4:53522647-53522666 | Msa1162730:intron | 15.0% |
| !! | TAAGAAAATAATTAACCAAT+GGG | + | chr7_4:53522648-53522667 | Msa1162730:intron | 15.0% |
| !!! | CTTTTTTAACATACATTTTT+TGG | - | chr7_4:53523154-53523173 | None:intergenic | 15.0% |
| !! | ATCATATATATAAAACAAAG+AGG | + | chr7_4:53523205-53523224 | Msa1162730:three_prime_UTR | 15.0% |
| !!! | AATTTTTGTAGGTTTTAAGA+CGG | - | chr7_4:53520464-53520483 | None:intergenic | 20.0% |
| !!! | ATTAATTCTAAATGTTTTGG+TGG | - | chr7_4:53520534-53520553 | None:intergenic | 20.0% |
| !! | AAAAACAAAAGAAGATTAGA+AGG | + | chr7_4:53520773-53520792 | Msa1162730:CDS | 20.0% |
| !! | ATATTATACTTTCAACAAGA+TGG | - | chr7_4:53521819-53521838 | None:intergenic | 20.0% |
| !! | TTAAAACCATTAACATTTGT+AGG | - | chr7_4:53522192-53522211 | None:intergenic | 20.0% |
| !!! | CACACCAAAATTTTATATAT+AGG | + | chr7_4:53522358-53522377 | Msa1162730:intron | 20.0% |
| !!! | AACTTTGTTTTCTCAAATAT+AGG | + | chr7_4:53522427-53522446 | Msa1162730:intron | 20.0% |
| !!! | ATGATTTTGTTTTGAAAGAA+TGG | - | chr7_4:53522594-53522613 | None:intergenic | 20.0% |
| !!! | AATTATTTTCTTATGGTTGA+AGG | - | chr7_4:53522641-53522660 | None:intergenic | 20.0% |
| !! | CTATAATAGACATAACCTTT+TGG | - | chr7_4:53520624-53520643 | None:intergenic | 25.0% |
| ! | CAAAAGGTTATGTCTATTAT+AGG | + | chr7_4:53520622-53520641 | Msa1162730:exon | 25.0% |
| !! | TTATGAACGATAATTTGTCA+AGG | - | chr7_4:53520987-53521006 | None:intergenic | 25.0% |
| !!! | CTTTAAAATATGAGGTATTG+CGG | + | chr7_4:53521148-53521167 | Msa1162730:intron | 25.0% |
| !!! | TTTAAAATATGAGGTATTGC+GGG | + | chr7_4:53521149-53521168 | Msa1162730:intron | 25.0% |
| ! | TATCTTATCCTTGGATAAAT+TGG | + | chr7_4:53521189-53521208 | Msa1162730:intron | 25.0% |
| !! | GACTATAGTTAGATATTTTG+AGG | + | chr7_4:53521265-53521284 | Msa1162730:intron | 25.0% |
| ! | GACTAATATACTTTCTTTAC+AGG | + | chr7_4:53521401-53521420 | Msa1162730:intron | 25.0% |
| ! | TAACTTCAAGTAAACTAAAC+TGG | + | chr7_4:53521450-53521469 | Msa1162730:intron | 25.0% |
| !!! | CATTTTATTAGAGGTATTGT+CGG | - | chr7_4:53521653-53521672 | None:intergenic | 25.0% |
| ! | AATAAGTAAGTTAGCAGTTA+GGG | + | chr7_4:53521865-53521884 | Msa1162730:intron | 25.0% |
| ! | TTCTTGACAAAAAAGAAATG+TGG | - | chr7_4:53521946-53521965 | None:intergenic | 25.0% |
| !!! | TTTTTTGTCAAGAAGTCTAA+TGG | + | chr7_4:53521952-53521971 | Msa1162730:intron | 25.0% |
| ! | TATATGCCTACAAATGTTAA+TGG | + | chr7_4:53522183-53522202 | Msa1162730:intron | 25.0% |
| !!! | GTTTTAAAAGCAAGAAATTG+TGG | + | chr7_4:53522205-53522224 | Msa1162730:intron | 25.0% |
| ! | AAAATCTATGCATAGTTCAT+TGG | - | chr7_4:53522264-53522283 | None:intergenic | 25.0% |
| !! | CTTCTAATTTTATTCTTGCA+TGG | - | chr7_4:53522329-53522348 | None:intergenic | 25.0% |
| !! | TTGTTTTCTCAAATATAGGA+TGG | + | chr7_4:53522431-53522450 | Msa1162730:intron | 25.0% |
| ! | GACATCCACATAATAAAATT+TGG | - | chr7_4:53522728-53522747 | None:intergenic | 25.0% |
| !!! | ACATACATTTTTTGGCATTT+TGG | - | chr7_4:53523146-53523165 | None:intergenic | 25.0% |
| ! | GCTATAATGATTAACAATGT+AGG | - | chr7_4:53523244-53523263 | None:intergenic | 25.0% |
| !! | GAATGGTGTTGAATTTTTGT+AGG | - | chr7_4:53520475-53520494 | None:intergenic | 30.0% |
| !! | ATGATGATGATGGCTAATTA+AGG | - | chr7_4:53520572-53520591 | None:intergenic | 30.0% |
| ! | CAAGATAATGATGATGATGA+TGG | - | chr7_4:53520582-53520601 | None:intergenic | 30.0% |
| TTTGTCTTACAGTATCCAAA+AGG | + | chr7_4:53520606-53520625 | Msa1162730:five_prime_UTR | 30.0% | |
| !!! | GTTGTTTTGGGAACATAATA+AGG | + | chr7_4:53520746-53520765 | Msa1162730:CDS | 30.0% |
| AAGACCAAGTTCAATAGAAA+TGG | + | chr7_4:53520837-53520856 | Msa1162730:CDS | 30.0% | |
| AAATACCAGTCAATAACGAT+AGG | - | chr7_4:53520925-53520944 | None:intergenic | 30.0% | |
| ! | TTAATTTCAACATGGCTTTG+AGG | + | chr7_4:53521100-53521119 | Msa1162730:intron | 30.0% |
| AAGGATAAGATAGAAGAAAC+AGG | - | chr7_4:53521181-53521200 | None:intergenic | 30.0% | |
| TGTTTCTTCTATCTTATCCT+TGG | + | chr7_4:53521180-53521199 | Msa1162730:intron | 30.0% | |
| GATCTAATCCAATTTATCCA+AGG | - | chr7_4:53521200-53521219 | None:intergenic | 30.0% | |
| TATTAAAATATGAGGTGCAG+TGG | + | chr7_4:53521228-53521247 | Msa1162730:intron | 30.0% | |
| ATTAAAATATGAGGTGCAGT+GGG | + | chr7_4:53521229-53521248 | Msa1162730:intron | 30.0% | |
| !!! | TTGAGGATATTTTTTTGCGT+TGG | + | chr7_4:53521282-53521301 | Msa1162730:intron | 30.0% |
| !!! | TGAGGATATTTTTTTGCGTT+GGG | + | chr7_4:53521283-53521302 | Msa1162730:intron | 30.0% |
| TTCAAGTAAACTAAACTGGA+AGG | + | chr7_4:53521454-53521473 | Msa1162730:intron | 30.0% | |
| TTTAATGCACCATATTGTGT+GGG | - | chr7_4:53521598-53521617 | None:intergenic | 30.0% | |
| ! | ATCGGAGTTCATTTTATTAG+AGG | - | chr7_4:53521662-53521681 | None:intergenic | 30.0% |
| TCTAATAAAATGAACTCCGA+TGG | + | chr7_4:53521661-53521680 | Msa1162730:intron | 30.0% | |
| CAATAAGTAAGTTAGCAGTT+AGG | + | chr7_4:53521864-53521883 | Msa1162730:intron | 30.0% | |
| AGAAATGTGGATAGATGTAT+TGG | - | chr7_4:53521933-53521952 | None:intergenic | 30.0% | |
| !!! | CTTTTTCAAGGTGAATAAGT+GGG | + | chr7_4:53521986-53522005 | Msa1162730:intron | 30.0% |
| !!! | TTTTTCAAGGTGAATAAGTG+GGG | + | chr7_4:53521987-53522006 | Msa1162730:intron | 30.0% |
| ! | TATGCATAGTTCATTGGTTA+AGG | - | chr7_4:53522258-53522277 | None:intergenic | 30.0% |
| TTGCATAATTGAATTCCCAT+TGG | - | chr7_4:53522666-53522685 | None:intergenic | 30.0% | |
| ! | CAGAGCCAAATTTTATTATG+TGG | + | chr7_4:53522720-53522739 | Msa1162730:intron | 30.0% |
| ! | AGTAGATGCTTGATATTTTC+TGG | + | chr7_4:53522793-53522812 | Msa1162730:intron | 30.0% |
| GCTAAGAAATGGAAAGAGAA+TGG | - | chr7_4:53520492-53520511 | None:intergenic | 35.0% | |
| TGAAGTTGGATGCTAAGAAA+TGG | - | chr7_4:53520503-53520522 | None:intergenic | 35.0% | |
| !!! | TCTAAATGTTTTGGTGGACA+AGG | - | chr7_4:53520528-53520547 | None:intergenic | 35.0% |
| ! | TTGTGTCGTAAGAGTTGTTT+TGG | + | chr7_4:53520733-53520752 | Msa1162730:CDS | 35.0% |
| !! | TGTGTCGTAAGAGTTGTTTT+GGG | + | chr7_4:53520734-53520753 | Msa1162730:CDS | 35.0% |
| TAGAAGGAAGAATTTACGTG+TGG | + | chr7_4:53520789-53520808 | Msa1162730:CDS | 35.0% | |
| !! | CTTGGTCTTTTTGACAAATC+TGG | - | chr7_4:53520826-53520845 | None:intergenic | 35.0% |
| GCTTCCATTTCTATTGAACT+TGG | - | chr7_4:53520844-53520863 | None:intergenic | 35.0% | |
| GGTTACGGTTAATTTCAACA+TGG | + | chr7_4:53521092-53521111 | Msa1162730:intron | 35.0% | |
| TTAAAATATGAGGTGCAGTG+GGG | + | chr7_4:53521230-53521249 | Msa1162730:intron | 35.0% | |
| !!! | TTTTTTTGCGTTGGGCTTTT+AGG | + | chr7_4:53521291-53521310 | Msa1162730:intron | 35.0% |
| TAGTCCATTCAAATGTCTGT+GGG | - | chr7_4:53521386-53521405 | None:intergenic | 35.0% | |
| TTAGTCCATTCAAATGTCTG+TGG | - | chr7_4:53521387-53521406 | None:intergenic | 35.0% | |
| AAACTGGAAGGTTTACTTGA+AGG | + | chr7_4:53521466-53521485 | Msa1162730:intron | 35.0% | |
| GAAGGTTTACTTGAAGGATA+TGG | + | chr7_4:53521472-53521491 | Msa1162730:intron | 35.0% | |
| CTTTAATGCACCATATTGTG+TGG | - | chr7_4:53521599-53521618 | None:intergenic | 35.0% | |
| AGTTTGAACTCAATTCAGAG+AGG | + | chr7_4:53521617-53521636 | Msa1162730:intron | 35.0% | |
| AATAAAATGAACTCCGATGG+AGG | + | chr7_4:53521664-53521683 | Msa1162730:intron | 35.0% | |
| ATAAAATGAACTCCGATGGA+GGG | + | chr7_4:53521665-53521684 | Msa1162730:intron | 35.0% | |
| !! | GCTAGAATTCACCTTTTTCA+AGG | + | chr7_4:53521974-53521993 | Msa1162730:intron | 35.0% |
| CCACTTATTCACCTTGAAAA+AGG | - | chr7_4:53521988-53522007 | None:intergenic | 35.0% | |
| !!! | CCTTTTTCAAGGTGAATAAG+TGG | + | chr7_4:53521985-53522004 | Msa1162730:intron | 35.0% |
| ACATGCATTGTTATATGCAG+GGG | - | chr7_4:53522034-53522053 | None:intergenic | 35.0% | |
| GACATGCATTGTTATATGCA+GGG | - | chr7_4:53522035-53522054 | None:intergenic | 35.0% | |
| AGACATGCATTGTTATATGC+AGG | - | chr7_4:53522036-53522055 | None:intergenic | 35.0% | |
| ! | ATGTGTGATACCAATTTTGC+AGG | + | chr7_4:53522386-53522405 | Msa1162730:intron | 35.0% |
| GCTTCAAATAGATGCATTTC+CGG | - | chr7_4:53522467-53522486 | None:intergenic | 35.0% | |
| ! | CATCTATTTGAAGCCAAAGT+TGG | + | chr7_4:53522473-53522492 | Msa1162730:CDS | 35.0% |
| ! | GCAGCTAATTTTTCCAACTT+TGG | - | chr7_4:53522489-53522508 | None:intergenic | 35.0% |
| !! | ACACTAGTGACTAGTTTACT+TGG | - | chr7_4:53522523-53522542 | None:intergenic | 35.0% |
| ! | CTGAATTGTTGGCATTTTCT+GGG | - | chr7_4:53522882-53522901 | None:intergenic | 35.0% |
| GAGATGAAAGAAGAAGTGAT+TGG | + | chr7_4:53523021-53523040 | Msa1162730:CDS | 35.0% | |
| ATGAAAGAAGAAGTGATTGG+AGG | + | chr7_4:53523024-53523043 | Msa1162730:CDS | 35.0% | |
| GAATACACTGTTCATCTCTG+TGG | - | chr7_4:53520681-53520700 | None:intergenic | 40.0% | |
| ATTTACGTGTGGAAGCTATG+TGG | + | chr7_4:53520800-53520819 | Msa1162730:CDS | 40.0% | |
| AGGCTAAGGATGACATACTT+TGG | - | chr7_4:53521053-53521072 | None:intergenic | 40.0% | |
| AGTCCATTCAAATGTCTGTG+GGG | - | chr7_4:53521385-53521404 | None:intergenic | 40.0% | |
| AGAGTAGACTCAACTCTCAT+TGG | - | chr7_4:53521575-53521594 | None:intergenic | 40.0% | |
| TTTACACAAGTTCCCTCCAT+CGG | - | chr7_4:53521680-53521699 | None:intergenic | 40.0% | |
| TGCCAACTAAGTTATGCTCA+CGG | + | chr7_4:53522057-53522076 | Msa1162730:intron | 40.0% | |
| ! | TGTGATACCAATTTTGCAGG+TGG | + | chr7_4:53522389-53522408 | Msa1162730:intron | 40.0% |
| AACAAGTCCACCTGCAAAAT+TGG | - | chr7_4:53522399-53522418 | None:intergenic | 40.0% | |
| TCAAATATAGGATGGCTGCT+TGG | + | chr7_4:53522439-53522458 | Msa1162730:intron | 40.0% | |
| ! | CCTGAATTGTTGGCATTTTC+TGG | - | chr7_4:53522883-53522902 | None:intergenic | 40.0% |
| CCAGAAAATGCCAACAATTC+AGG | + | chr7_4:53522880-53522899 | Msa1162730:intron | 40.0% | |
| GCTTGAATTGTTTGCAGCTT+TGG | + | chr7_4:53522989-53523008 | Msa1162730:intron | 40.0% | |
| !! | TGTTTGCAGCTTTGGAAAGA+TGG | + | chr7_4:53522997-53523016 | Msa1162730:intron | 40.0% |
| !! | TTTGGCATTTTGGAGAGAGA+GGG | - | chr7_4:53523136-53523155 | None:intergenic | 40.0% |
| !! | TTTTGGCATTTTGGAGAGAG+AGG | - | chr7_4:53523137-53523156 | None:intergenic | 40.0% |
| ATTCCTCAGTGCTTTGCAAG+TGG | + | chr7_4:53520697-53520716 | Msa1162730:CDS | 45.0% | |
| CCAGTCAATAACGATAGGCT+CGG | - | chr7_4:53520920-53520939 | None:intergenic | 45.0% | |
| ! | GATACAGATTGTGAGGGTGT+GGG | - | chr7_4:53521357-53521376 | None:intergenic | 45.0% |
| AGATACAGATTGTGAGGGTG+TGG | - | chr7_4:53521358-53521377 | None:intergenic | 45.0% | |
| GGGTGAGATACAGATTGTGA+GGG | - | chr7_4:53521363-53521382 | None:intergenic | 45.0% | |
| TCCATTCAAATGTCTGTGGG+GGG | - | chr7_4:53521383-53521402 | None:intergenic | 45.0% | |
| GTCCATTCAAATGTCTGTGG+GGG | - | chr7_4:53521384-53521403 | None:intergenic | 45.0% | |
| GTCTACTCTCCCACACAATA+TGG | + | chr7_4:53521586-53521605 | Msa1162730:intron | 45.0% | |
| GTAAGTTAGCAGTTAGGGTG+AGG | + | chr7_4:53521870-53521889 | Msa1162730:intron | 45.0% | |
| CTCCGTGAGCATAACTTAGT+TGG | - | chr7_4:53522062-53522081 | None:intergenic | 45.0% | |
| AGAAGTGATTGGAGGCCATA+AGG | + | chr7_4:53523032-53523051 | Msa1162730:CDS | 45.0% | |
| GAAGTGATTGGAGGCCATAA+GGG | + | chr7_4:53523033-53523052 | Msa1162730:CDS | 45.0% | |
| ! | TGGTGGACAAGGCATGAAGT+TGG | - | chr7_4:53520517-53520536 | None:intergenic | 50.0% |
| TCAGTGCTTTGCAAGTGGCA+GGG | + | chr7_4:53520702-53520721 | Msa1162730:CDS | 50.0% | |
| CCGAGCCTATCGTTATTGAC+TGG | + | chr7_4:53520917-53520936 | Msa1162730:CDS | 50.0% | |
| GGGGTGAGATACAGATTGTG+AGG | - | chr7_4:53521364-53521383 | None:intergenic | 50.0% | |
| ACCCCCCACAGACATTTGAA+TGG | + | chr7_4:53521379-53521398 | Msa1162730:intron | 50.0% | |
| ! | AGGTGAATAAGTGGGGTGTC+CGG | + | chr7_4:53521994-53522013 | Msa1162730:intron | 50.0% |
| ATTGTTATATGCAGGGGCCG+GGG | - | chr7_4:53522028-53522047 | None:intergenic | 50.0% | |
| CATTGTTATATGCAGGGGCC+GGG | - | chr7_4:53522029-53522048 | None:intergenic | 50.0% | |
| GCATTGTTATATGCAGGGGC+CGG | - | chr7_4:53522030-53522049 | None:intergenic | 50.0% | |
| CCACGCTTGACTAATGTCTG+AGG | - | chr7_4:53522760-53522779 | None:intergenic | 50.0% | |
| CCTCAGACATTAGTCAAGCG+TGG | + | chr7_4:53522757-53522776 | Msa1162730:CDS | 50.0% | |
| TGAGGACGCACCTGAATTGT+TGG | - | chr7_4:53522893-53522912 | None:intergenic | 50.0% | |
| ! | CAATGACTAGCCAGCCCTTA+TGG | - | chr7_4:53523050-53523069 | None:intergenic | 50.0% |
| !! | CTGCCACTTGCAAAGCACTG+AGG | - | chr7_4:53520703-53520722 | None:intergenic | 55.0% |
| CTCAGTGCTTTGCAAGTGGC+AGG | + | chr7_4:53520701-53520720 | Msa1162730:CDS | 55.0% | |
| ! | GGTGAATAAGTGGGGTGTCC+GGG | + | chr7_4:53521995-53522014 | Msa1162730:intron | 55.0% |
| ! | GTGAATAAGTGGGGTGTCCG+GGG | + | chr7_4:53521996-53522015 | Msa1162730:intron | 55.0% |
| !! | ATAGGATGGCTGCTTGGTGC+CGG | + | chr7_4:53522445-53522464 | Msa1162730:intron | 55.0% |
| TGATTGGAGGCCATAAGGGC+TGG | + | chr7_4:53523037-53523056 | Msa1162730:CDS | 55.0% | |
| GGTGTCCGGGGTTCGAACCC+CGG | + | chr7_4:53522008-53522027 | Msa1162730:intron | 70.0% | |
| AGGGGCCGGGGTTCGAACCC+CGG | - | chr7_4:53522016-53522035 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_4 | gene | 53520432 | 53523272 | 53520432 | ID=Msa1162730;Name=Msa1162730 |
| chr7_4 | mRNA | 53520432 | 53523272 | 53520432 | ID=Msa1162730-mRNA-1;Parent=Msa1162730;Name=Msa1162730-mRNA-1;_AED=0.03;_eAED=0.03;_QI=199|1|1|1|1|1|5|168|188 |
| chr7_4 | exon | 53520432 | 53520938 | 53520432 | ID=Msa1162730-mRNA-1:exon:15485;Parent=Msa1162730-mRNA-1 |
| chr7_4 | exon | 53522449 | 53522523 | 53522449 | ID=Msa1162730-mRNA-1:exon:15486;Parent=Msa1162730-mRNA-1 |
| chr7_4 | exon | 53522723 | 53522789 | 53522723 | ID=Msa1162730-mRNA-1:exon:15487;Parent=Msa1162730-mRNA-1 |
| chr7_4 | exon | 53522884 | 53522901 | 53522884 | ID=Msa1162730-mRNA-1:exon:15488;Parent=Msa1162730-mRNA-1 |
| chr7_4 | exon | 53523006 | 53523272 | 53523006 | ID=Msa1162730-mRNA-1:exon:15489;Parent=Msa1162730-mRNA-1 |
| chr7_4 | five_prime_UTR | 53520432 | 53520630 | 53520432 | ID=Msa1162730-mRNA-1:five_prime_utr;Parent=Msa1162730-mRNA-1 |
| chr7_4 | CDS | 53520631 | 53520938 | 53520631 | ID=Msa1162730-mRNA-1:cds;Parent=Msa1162730-mRNA-1 |
| chr7_4 | CDS | 53522449 | 53522523 | 53522449 | ID=Msa1162730-mRNA-1:cds;Parent=Msa1162730-mRNA-1 |
| chr7_4 | CDS | 53522723 | 53522789 | 53522723 | ID=Msa1162730-mRNA-1:cds;Parent=Msa1162730-mRNA-1 |
| chr7_4 | CDS | 53522884 | 53522901 | 53522884 | ID=Msa1162730-mRNA-1:cds;Parent=Msa1162730-mRNA-1 |
| chr7_4 | CDS | 53523006 | 53523104 | 53523006 | ID=Msa1162730-mRNA-1:cds;Parent=Msa1162730-mRNA-1 |
| chr7_4 | three_prime_UTR | 53523105 | 53523272 | 53523105 | ID=Msa1162730-mRNA-1:three_prime_utr;Parent=Msa1162730-mRNA-1 |
| Gene Sequence |
| Protein sequence |
