AlfalfaGEDB | Msa1117430

M. sativa cultivar zhongmu-4 / Msa1117430

KEGG: K13412
GO: GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004683 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009931 GO:0009987 GO:0010033 GO:0010857 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0023052 GO:0032870 GO:0033993 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046777 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0097305 GO:0097306 GO:0140096 GO:1901564 GO:1901700 GO:1901701
PFAM: PF00069.28

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1117430	KEH41799.1	98.288	292	5	0	30	321	316	607	0.0	600

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1117430	sp\|Q9ZV15\|CDPKK_ARATH	86.301	292	40	0	30	321	289	580	0.0	527

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1117430	A0A072VIE3	98.288	292	5	0	30	321	316	607	0.0	600

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0271080	Msa1117430	0.840809	6.951195e-58	-8.615850e-47
Msa0872570	Msa1117430	0.889573	2.145308e-73	-8.615850e-47
Msa1117430	Msa1397370	0.852443	4.601937e-61	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1117430	MtrunA17_Chr1g0176421	88.580	324	5	1	30	321	316	639	0.0	582
Msa1117430	MtrunA17_Chr1g0170281	78.983	295	59	1	30	321	273	567	1.56e-172	491
Msa1117430	MtrunA17_Chr1g0176751	74.744	293	72	1	30	320	279	571	2.79e-159	457
Msa1117430	MtrunA17_Chr1g0200601	73.427	286	76	0	30	315	185	470	9.37e-154	440
Msa1117430	MtrunA17_Chr5g0448721	69.836	305	86	1	19	317	234	538	1.11e-152	439
Msa1117430	MtrunA17_Chr3g0131181	70.833	288	84	0	30	317	184	471	6.44e-152	436
Msa1117430	MtrunA17_Chr7g0267751	71.528	288	82	0	25	312	285	572	1.13e-149	433
Msa1117430	MtrunA17_Chr8g0385341	71.528	288	82	0	30	317	185	472	3.67e-149	429
Msa1117430	MtrunA17_Chr8g0387671	65.141	284	98	1	30	312	221	504	1.40e-134	392
Msa1117430	MtrunA17_Chr4g0074811	62.630	289	107	1	25	312	241	529	1.13e-133	390

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1117430	AT2G38910.1	86.301	292	40	0	30	321	289	580	0.0	527
Msa1117430	AT5G04870.1	80.142	282	56	0	31	312	306	587	4.09e-168	481
Msa1117430	AT3G10660.2	79.078	282	59	0	31	312	342	623	4.02e-167	479
Msa1117430	AT3G10660.1	79.078	282	59	0	31	312	342	623	4.02e-167	479
Msa1117430	AT1G35670.1	72.378	286	79	0	30	315	181	466	4.36e-150	431
Msa1117430	AT4G38230.1	67.647	306	93	1	19	318	18	323	5.64e-150	425
Msa1117430	AT4G09570.1	72.028	286	80	0	30	315	180	465	1.28e-149	430
Msa1117430	AT4G38230.4	67.647	306	93	1	19	318	162	467	1.34e-148	427
Msa1117430	AT4G38230.3	67.647	306	93	1	19	318	162	467	1.34e-148	427
Msa1117430	AT2G17290.1	68.197	305	91	1	19	317	223	527	2.05e-148	428

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Find 145 sgRNAs with CRISPR-Local

Find 273 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATCCTCTTCTCTCTCAG+AGG	0.656035	7_3:-65844457	Msa1117430:five_prime_UTR
AAATGGGTAAGAGGTATAAA+AGG	0.329136	7_3:+65840998	None:intergenic
AAATGTCTCACCTGTGGCAA+TGG	0.530469	7_3:+65843269	None:intergenic
AACATATGTGACGGCGACGG+TGG	0.680190	7_3:-65844032	Msa1117430:five_prime_UTR
AACCTTGTTTAGATGAAGCA+TGG	0.582578	7_3:+65841615	None:intergenic
AAGAGTGGGTTCCGTTCTTA+AGG	0.360602	7_3:-65841890	Msa1117430:CDS
AAGTCCTGCAATTTCCTCCT+CGG	0.494533	7_3:+65841987	None:intergenic
AATAGAGTGAACATATGTGA+CGG	0.669747	7_3:-65844041	Msa1117430:five_prime_UTR
AATAGTGGTACCATAGACTA+CGG	0.614703	7_3:-65841652	Msa1117430:CDS
AATCAACTGGTTAATGCAAG+CGG	0.643760	7_3:-65841860	Msa1117430:intron

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AATAGAGTGAACATATGTGA+CGG	-	chr7_3:65841135-65841154	Msa1117430:three_prime_UTR	30.0%
TTTCATTTACATACTTCGTG+AGG	+	chr7_3:65841236-65841255	None:intergenic	30.0%
ACGAATACAAGTAATTACTG+GGG	+	chr7_3:65841357-65841376	None:intergenic	30.0%
CACGAATACAAGTAATTACT+GGG	+	chr7_3:65841358-65841377	None:intergenic	30.0%
ACACGAATACAAGTAATTAC+TGG	+	chr7_3:65841359-65841378	None:intergenic	30.0%
TGAATATGCTTGCAAATGTA+TGG	-	chr7_3:65841689-65841708	Msa1117430:intron	30.0%
GGACAAACAATAAAATCAAG+TGG	+	chr7_3:65842080-65842099	None:intergenic	30.0%
AGACATAACTAATCCTACTA+AGG	+	chr7_3:65842101-65842120	None:intergenic	30.0%
TTGTTCGAAGAATGCTTATA+AGG	-	chr7_3:65842255-65842274	Msa1117430:intron	30.0%
TGTTCGAAGAATGCTTATAA+GGG	-	chr7_3:65842256-65842275	Msa1117430:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_3	gene	65840711	65844487	65840711	ID=Msa1117430;Name=Msa1117430
chr7_3	mRNA	65840711	65844487	65840711	ID=Msa1117430-mRNA-1;Parent=Msa1117430;Name=Msa1117430-mRNA-1;_AED=0.09;_eAED=0.09;_QI=474\|0.83\|0.85\|1\|1\|1\|7\|514\|321
chr7_3	exon	65840711	65841296	65840711	ID=Msa1117430-mRNA-1:exon:15746;Parent=Msa1117430-mRNA-1
chr7_3	exon	65841462	65841686	65841462	ID=Msa1117430-mRNA-1:exon:15745;Parent=Msa1117430-mRNA-1
chr7_3	exon	65841861	65842028	65841861	ID=Msa1117430-mRNA-1:exon:15744;Parent=Msa1117430-mRNA-1
chr7_3	exon	65842275	65842390	65842275	ID=Msa1117430-mRNA-1:exon:15743;Parent=Msa1117430-mRNA-1
chr7_3	exon	65842884	65843036	65842884	ID=Msa1117430-mRNA-1:exon:15742;Parent=Msa1117430-mRNA-1
chr7_3	exon	65843136	65843310	65843136	ID=Msa1117430-mRNA-1:exon:15741;Parent=Msa1117430-mRNA-1
chr7_3	exon	65843957	65844487	65843957	ID=Msa1117430-mRNA-1:exon:15740;Parent=Msa1117430-mRNA-1
chr7_3	five_prime_UTR	65844014	65844487	65844014	ID=Msa1117430-mRNA-1:five_prime_utr;Parent=Msa1117430-mRNA-1
chr7_3	CDS	65843957	65844013	65843957	ID=Msa1117430-mRNA-1:cds;Parent=Msa1117430-mRNA-1
chr7_3	CDS	65843136	65843310	65843136	ID=Msa1117430-mRNA-1:cds;Parent=Msa1117430-mRNA-1
chr7_3	CDS	65842884	65843036	65842884	ID=Msa1117430-mRNA-1:cds;Parent=Msa1117430-mRNA-1
chr7_3	CDS	65842275	65842390	65842275	ID=Msa1117430-mRNA-1:cds;Parent=Msa1117430-mRNA-1
chr7_3	CDS	65841861	65842028	65841861	ID=Msa1117430-mRNA-1:cds;Parent=Msa1117430-mRNA-1
chr7_3	CDS	65841462	65841686	65841462	ID=Msa1117430-mRNA-1:cds;Parent=Msa1117430-mRNA-1
chr7_3	CDS	65841225	65841296	65841225	ID=Msa1117430-mRNA-1:cds;Parent=Msa1117430-mRNA-1
chr7_3	three_prime_UTR	65840711	65841224	65840711	ID=Msa1117430-mRNA-1:three_prime_utr;Parent=Msa1117430-mRNA-1

Gene Sequence

>Msa1117430

ATGAGGGTTGATGAAGGAAAAGTATGGATTGTGATCCCCATCGCAGCACCTCACGAATTCAGTTTGAGAAAAATATCCATTGCCACAGGTGAGACATTTACAGATGTGGTTGGAAGCCCATACTATGTTGCTCCTGAAGTTTTACGGAAGAACTACGGTCAAGAATGTGATGTATGGAGCGCTGGGGTGATCATTTATATTCTACTCAGTGGAGTTCTGCCATTTTGGGATGAAACTGAACAAGGGATATTTGAGCAAGTATTGAAAGGAGAGCTTGACTTTATTTCTGATCCGTGGCCAGGCATATCTGAAAGTGCAAAGGATCTTGTTCGAAGAATGCTTATAAGGGATCCTAAGAAGAGGATGACGGCACATGAAGTTCTTTGTCATCCTTGGATGCAGGTTGGAGGTGTTGCTCCTGATAAACCGCTTGATTCCGCAGTCTTATCTCGTTTGAAGCAATTCTCTGCAATGAACAAGCTCAAAAAAATAGCCATTCGAGTAATTGCTGAAAATTTGTCCGAGGAGGAAATTGCAGGACTTAAAGAAATGTTCAAGATGATAGACACAGATAATAGCGGACAAATCACTCTTGAAGAACTGAAAAATGGCTTAGAAAGAGTGGGTTCCGTTCTTAAGGATTCTGAAATCAACTGGTTAATGCAAGCGGCAGACGTTGATAATAGTGGTACCATAGACTACGGTGAATTCATAGCAGCCATGCTTCATCTAAACAAGGTTCAAAAGGAGGATCATCTATTTGCAGCCTTTAACTACTTTGACAAAGATGGGAGTGGATACATTACAAAGGATGAGCTCCAACAAGCCTGTAACCAGTTTGGCCTACAAGATGATCATCTAGATGATATAATACGTGAAGCTGATCGCGATAATGATGGTCGCATTGACTACAGTGAATTTGTTGCAATGATGCAAGACACTGATTTTGGCAAAAAGGGGCTATAA

Protein sequence

>Msa1117430

MRVDEGKVWIVIPIAAPHEFSLRKISIATGETFTDVVGSPYYVAPEVLRKNYGQECDVWSAGVIIYILLSGVLPFWDETEQGIFEQVLKGELDFISDPWPGISESAKDLVRRMLIRDPKKRMTAHEVLCHPWMQVGGVAPDKPLDSAVLSRLKQFSAMNKLKKIAIRVIAENLSEEEIAGLKEMFKMIDTDNSGQITLEELKNGLERVGSVLKDSEINWLMQAADVDNSGTIDYGEFIAAMLHLNKVQKEDHLFAAFNYFDKDGSGYITKDELQQACNQFGLQDDHLDDIIREADRDNDGRIDYSEFVAMMQDTDFGKKGL*