Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1118340 | XP_003624720.1 | 83.960 | 399 | 40 | 4 | 1 | 375 | 1 | 399 | 0.0 | 657 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1118340 | sp|Q9FLD7|GT14A_ARATH | 46.197 | 355 | 166 | 3 | 46 | 375 | 93 | 447 | 1.49e-104 | 318 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1118340 | G7L1K4 | 83.960 | 399 | 40 | 4 | 1 | 375 | 1 | 399 | 0.0 | 657 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0988010 | Msa1118340 | 0.818916 | 1.526972e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1118340 | MtrunA17_Chr7g0254121 | 83.960 | 399 | 40 | 4 | 1 | 375 | 1 | 399 | 0.0 | 657 |
| Msa1118340 | MtrunA17_Chr6g0460801 | 61.330 | 406 | 124 | 6 | 1 | 375 | 1 | 404 | 4.11e-179 | 503 |
| Msa1118340 | MtrunA17_Chr4g0022501 | 49.713 | 348 | 144 | 8 | 54 | 374 | 89 | 432 | 4.13e-108 | 323 |
| Msa1118340 | MtrunA17_Chr6g0452631 | 42.752 | 407 | 195 | 6 | 6 | 374 | 26 | 432 | 1.23e-104 | 315 |
| Msa1118340 | MtrunA17_Chr2g0317441 | 48.276 | 348 | 148 | 7 | 54 | 375 | 83 | 424 | 7.56e-102 | 307 |
| Msa1118340 | MtrunA17_Chr4g0010141 | 44.380 | 347 | 168 | 3 | 54 | 375 | 73 | 419 | 3.06e-98 | 298 |
| Msa1118340 | MtrunA17_Chr4g0063621 | 42.733 | 344 | 142 | 4 | 55 | 374 | 76 | 388 | 3.42e-88 | 271 |
| Msa1118340 | MtrunA17_Chr1g0208381 | 38.630 | 365 | 172 | 6 | 50 | 375 | 46 | 397 | 2.79e-76 | 241 |
| Msa1118340 | MtrunA17_Chr1g0169461 | 36.676 | 349 | 193 | 6 | 51 | 374 | 93 | 438 | 2.37e-70 | 227 |
| Msa1118340 | MtrunA17_Chr4g0002191 | 36.364 | 352 | 197 | 6 | 50 | 375 | 57 | 407 | 2.34e-63 | 207 |
| Msa1118340 | MtrunA17_Chr2g0307111 | 34.821 | 112 | 58 | 2 | 261 | 372 | 2 | 98 | 7.06e-11 | 58.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1118340 | AT3G03690.1 | 57.187 | 327 | 102 | 5 | 22 | 318 | 24 | 342 | 1.27e-120 | 354 |
| Msa1118340 | AT4G27480.2 | 48.711 | 349 | 145 | 6 | 54 | 375 | 80 | 421 | 1.02e-112 | 335 |
| Msa1118340 | AT4G27480.3 | 48.711 | 349 | 145 | 6 | 54 | 375 | 80 | 421 | 1.02e-112 | 335 |
| Msa1118340 | AT4G27480.1 | 48.711 | 349 | 145 | 6 | 54 | 375 | 80 | 421 | 1.02e-112 | 335 |
| Msa1118340 | AT1G03520.2 | 48.718 | 351 | 149 | 8 | 51 | 374 | 11 | 357 | 5.54e-109 | 323 |
| Msa1118340 | AT4G03340.1 | 49.425 | 348 | 145 | 8 | 54 | 374 | 104 | 447 | 1.34e-108 | 326 |
| Msa1118340 | AT1G03520.1 | 48.718 | 351 | 149 | 8 | 51 | 374 | 100 | 446 | 3.42e-108 | 325 |
| Msa1118340 | AT1G53100.1 | 43.204 | 412 | 182 | 9 | 4 | 374 | 22 | 422 | 6.84e-106 | 318 |
| Msa1118340 | AT5G39990.1 | 46.197 | 355 | 166 | 3 | 46 | 375 | 93 | 447 | 1.51e-105 | 318 |
| Msa1118340 | AT3G15350.2 | 48.711 | 349 | 147 | 8 | 54 | 375 | 81 | 424 | 3.75e-105 | 316 |
| Msa1118340 | AT3G15350.1 | 48.711 | 349 | 147 | 8 | 54 | 375 | 81 | 424 | 3.75e-105 | 316 |
| Msa1118340 | AT1G53100.2 | 44.110 | 399 | 171 | 9 | 4 | 361 | 22 | 409 | 1.69e-103 | 311 |
| Msa1118340 | AT5G15050.1 | 46.398 | 347 | 161 | 3 | 54 | 375 | 88 | 434 | 3.19e-101 | 306 |
| Msa1118340 | AT4G03340.2 | 45.690 | 348 | 135 | 9 | 54 | 374 | 104 | 424 | 5.02e-93 | 285 |
| Msa1118340 | AT2G37585.1 | 41.457 | 357 | 162 | 7 | 44 | 375 | 50 | 384 | 2.60e-83 | 259 |
| Msa1118340 | AT1G71070.1 | 37.604 | 359 | 195 | 5 | 44 | 375 | 39 | 395 | 5.14e-78 | 246 |
| Msa1118340 | AT3G24040.1 | 35.294 | 357 | 194 | 7 | 49 | 374 | 64 | 414 | 3.19e-68 | 221 |
| Msa1118340 | AT3G03690.2 | 64.384 | 146 | 50 | 2 | 21 | 166 | 23 | 166 | 4.45e-55 | 180 |
Find 104 sgRNAs with CRISPR-Local
Find 328 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTACAGATTGTTTAGAATT+TGG | 0.148661 | 7_3:+66901698 | None:intergenic |
| TTTAATTTGATGTACAATTA+TGG | 0.182457 | 7_3:-66901794 | Msa1118340:three_prime_UTR |
| CCTCTATAAGTTACCAAATT+AGG | 0.185633 | 7_3:+66905820 | None:intergenic |
| TTTACAAGTGATCAATTAAA+TGG | 0.185731 | 7_3:+66901870 | None:intergenic |
| TGAATCAAATAGTAGTTATT+TGG | 0.198310 | 7_3:+66905946 | None:intergenic |
| ATCAAGTAAGCAAAAGTAAT+TGG | 0.205146 | 7_3:+66906027 | None:intergenic |
| AATATTCATGTTTACCTTCA+TGG | 0.222224 | 7_3:-66906166 | Msa1118340:CDS |
| GATTGTTGGGAAGCCTAATT+TGG | 0.234769 | 7_3:-66905833 | Msa1118340:CDS |
| GGTATGTTATGTTGGTTCTT+AGG | 0.237890 | 7_3:+66906049 | None:intergenic |
| TATTTGATTCACATGGATTA+TGG | 0.248998 | 7_3:-66905934 | Msa1118340:CDS |
| TCAAATCAATATAGTCTCTT+TGG | 0.267722 | 7_3:+66901744 | None:intergenic |
| ACTTAAAGATTATAGGAAAA+TGG | 0.276934 | 7_3:-66902353 | Msa1118340:CDS |
| GTGATACTGTGAAGCTAAAA+AGG | 0.282977 | 7_3:-66905990 | Msa1118340:CDS |
| ATTATAGTGTGAGTGGAATT+AGG | 0.306395 | 7_3:+66906341 | None:intergenic |
| ACTAGTTCCCTGTGCATGTT+TGG | 0.325327 | 7_3:-66901636 | Msa1118340:three_prime_UTR |
| ATTTGAAGGGTTAGTCTTGT+AGG | 0.337088 | 7_3:+66906111 | None:intergenic |
| AGAGACCTAGGATGTTGTTT+TGG | 0.350611 | 7_3:+66902379 | None:intergenic |
| ACATCTTTATGTTCTGCATC+TGG | 0.364339 | 7_3:+66905907 | None:intergenic |
| CCTAATTTGGTAACTTATAG+AGG | 0.376429 | 7_3:-66905820 | Msa1118340:CDS |
| ACTGTTTGGAAATATCCTTC+TGG | 0.379198 | 7_3:+66902475 | None:intergenic |
| GGTTTGAGAACTGAGAATTA+TGG | 0.379239 | 7_3:-66902184 | Msa1118340:CDS |
| CTCTAGGACTTAAAGATTAT+AGG | 0.380227 | 7_3:-66902360 | Msa1118340:CDS |
| ATGTTTACCTACACTGCATT+TGG | 0.382779 | 7_3:+66902086 | None:intergenic |
| GATCGGTATTGTCTCGTCTA+AGG | 0.383388 | 7_3:-66901934 | Msa1118340:three_prime_UTR |
| TTAGTCAAGTTGGGAATGTT+TGG | 0.387132 | 7_3:-66905855 | Msa1118340:CDS |
| TTAATTTGATGTACAATTAT+GGG | 0.398400 | 7_3:-66901793 | Msa1118340:three_prime_UTR |
| ATGATCTTCACTACATTACT+TGG | 0.398716 | 7_3:-66902411 | Msa1118340:CDS |
| GGAAAGAACAAAGCATGTTC+AGG | 0.401645 | 7_3:-66902205 | Msa1118340:CDS |
| GTTGGGAATGTTTGGATTGT+TGG | 0.407675 | 7_3:-66905847 | Msa1118340:CDS |
| AGAAGATGCTGTGTAAATAA+AGG | 0.414732 | 7_3:+66906263 | None:intergenic |
| TAGCTTCACAGTATCACCTT+TGG | 0.422084 | 7_3:+66905996 | None:intergenic |
| TGCTTCTTAAGACATGTCAT+TGG | 0.425258 | 7_3:-66905759 | Msa1118340:CDS |
| CACAAAATTCAGGTTCAGCT+TGG | 0.427950 | 7_3:-66902594 | Msa1118340:intron |
| TTAAGACATGTCATTGGGAT+TGG | 0.429628 | 7_3:-66905753 | Msa1118340:CDS |
| TTCTTTAGCCTTCTTGAGCC+AGG | 0.430968 | 7_3:+66902145 | None:intergenic |
| TTTGAAGGGTTAGTCTTGTA+GGG | 0.435549 | 7_3:+66906112 | None:intergenic |
| TTTGGAGGGTGGTGTTCTCA+AGG | 0.438791 | 7_3:-66902229 | Msa1118340:CDS |
| TAGCCTTCTTGAGCCAGGAC+CGG | 0.442291 | 7_3:+66902150 | None:intergenic |
| CTTGAGACCTTTGATTAAGC+TGG | 0.446794 | 7_3:-66901961 | Msa1118340:three_prime_UTR |
| AGTAATTGGGTATGTTATGT+TGG | 0.449563 | 7_3:+66906041 | None:intergenic |
| GCTTCTTAAGACATGTCATT+GGG | 0.449821 | 7_3:-66905758 | Msa1118340:CDS |
| ATCACACTGCTCAAGTTTGT+AGG | 0.450437 | 7_3:-66902043 | Msa1118340:three_prime_UTR |
| AAATAATTGCATCAGCCATC+AGG | 0.453374 | 7_3:+66903768 | None:intergenic |
| AGCCTTCTTGAGCCAGGACC+GGG | 0.454331 | 7_3:+66902151 | None:intergenic |
| GTCCATAGCACTAGGTTTCA+AGG | 0.455218 | 7_3:+66906083 | None:intergenic |
| GTTTCAAGGTTGAGATTTGA+AGG | 0.457001 | 7_3:+66906097 | None:intergenic |
| TTGGGAATGTTTGGATTGTT+GGG | 0.458432 | 7_3:-66905846 | Msa1118340:CDS |
| TTTGTTAAACAAAATTCTCA+TGG | 0.460451 | 7_3:-66902122 | Msa1118340:CDS |
| TCAAGTAAGCAAAAGTAATT+GGG | 0.460700 | 7_3:+66906028 | None:intergenic |
| GAAGATGCTGTGTAAATAAA+GGG | 0.465146 | 7_3:+66906264 | None:intergenic |
| CAAATTCTAAACAATCTGTA+AGG | 0.466390 | 7_3:-66901697 | Msa1118340:three_prime_UTR |
| GGTTTGCTTAAACCCGGTCC+TGG | 0.466849 | 7_3:-66902163 | Msa1118340:CDS |
| CAGAAATCTTCAAATAAACT+TGG | 0.471266 | 7_3:+66901659 | None:intergenic |
| TGGGAGAGAGAGTGAGGTGG+TGG | 0.475329 | 7_3:+66906239 | None:intergenic |
| GTGAGTTGCATATTACTGTT+TGG | 0.477123 | 7_3:+66902461 | None:intergenic |
| ATTTATATCCAAACATGCAC+AGG | 0.477202 | 7_3:+66901628 | None:intergenic |
| CTGAGTATTGCATTATGGGA+TGG | 0.478793 | 7_3:-66902549 | Msa1118340:CDS |
| AAAGGTCTCAAGTTCGAATA+CGG | 0.479093 | 7_3:+66901972 | None:intergenic |
| TAGTGCTTCTGATTATCCCT+TGG | 0.482480 | 7_3:-66905719 | Msa1118340:CDS |
| TATCCCTTGGTTACACAAGA+TGG | 0.484610 | 7_3:-66905706 | Msa1118340:CDS |
| TGAGTATTGCATTATGGGAT+GGG | 0.488880 | 7_3:-66902548 | Msa1118340:CDS |
| TCAATTAAATGGAAATCAAA+TGG | 0.492643 | 7_3:+66901881 | None:intergenic |
| AGAGTAGTTGCAAGCATAGT+TGG | 0.496093 | 7_3:+66905796 | None:intergenic |
| AAACAACATCCTAGGTCTCT+AGG | 0.497584 | 7_3:-66902376 | Msa1118340:CDS |
| AAATTGTGGGAGAGAGAGTG+AGG | 0.500606 | 7_3:+66906233 | None:intergenic |
| CTCAAGTTTGTAGGATCACA+TGG | 0.515702 | 7_3:-66902034 | Msa1118340:three_prime_UTR |
| AACCTTGAAACCTAGTGCTA+TGG | 0.517926 | 7_3:-66906085 | Msa1118340:CDS |
| TTGATTAAGCTGGTTGAGAT+CGG | 0.527810 | 7_3:-66901951 | Msa1118340:three_prime_UTR |
| TAATATTGAGGTTACCATGA+AGG | 0.531200 | 7_3:+66906152 | None:intergenic |
| CTTGGTTACACAAGATGGTA+TGG | 0.532748 | 7_3:-66905701 | Msa1118340:intron |
| TGCAACTACTCTTCATGCTA+TGG | 0.532994 | 7_3:-66905785 | Msa1118340:CDS |
| TAAAGATGTGGCAGAATATG+TGG | 0.535180 | 7_3:-66905893 | Msa1118340:CDS |
| TAGTGGATGCACATGCCTGA+TGG | 0.538003 | 7_3:-66903783 | Msa1118340:CDS |
| TGAGGATATTATAGTGTGAG+TGG | 0.540730 | 7_3:+66906334 | None:intergenic |
| ATCCTCCAAAACAACATCCT+AGG | 0.540904 | 7_3:-66902384 | Msa1118340:CDS |
| ATTTGATGTACAATTATGGG+TGG | 0.547129 | 7_3:-66901790 | Msa1118340:three_prime_UTR |
| AGACAAAGTTAGTATAGTAG+AGG | 0.549358 | 7_3:+66902503 | None:intergenic |
| TAGTAGAGGAGTAGAGTCCT+CGG | 0.558113 | 7_3:+66902517 | None:intergenic |
| AACCCGGTCCTGGCTCAAGA+AGG | 0.561284 | 7_3:-66902153 | Msa1118340:CDS |
| TCTTTAAGTCCTAGAGACCT+AGG | 0.565974 | 7_3:+66902367 | None:intergenic |
| AATGTAGTGAAGATCATGGT+TGG | 0.568469 | 7_3:+66902417 | None:intergenic |
| TAACTACTATTTGATTCACA+TGG | 0.570348 | 7_3:-66905941 | Msa1118340:CDS |
| ATGTTCCTCTACAAGTATGA+AGG | 0.572897 | 7_3:+66903709 | None:intergenic |
| TTTCAAGGTTGAGATTTGAA+GGG | 0.573432 | 7_3:+66906098 | None:intergenic |
| TGATCTTCACTACATTACTT+GGG | 0.576959 | 7_3:-66902410 | Msa1118340:CDS |
| TACTTGATCTCTGCATCCAA+AGG | 0.577475 | 7_3:-66906012 | Msa1118340:CDS |
| TGTGCAGTGTCTATTTCTAG+TGG | 0.582465 | 7_3:-66903800 | Msa1118340:CDS |
| TTGAAGTAGTCCATAGCACT+AGG | 0.585444 | 7_3:+66906075 | None:intergenic |
| TTTGATGTACAATTATGGGT+GGG | 0.588091 | 7_3:-66901789 | Msa1118340:three_prime_UTR |
| AATTATGGTTTGCTTAAACC+CGG | 0.590550 | 7_3:-66902169 | Msa1118340:CDS |
| AAGTAATGTAGTGAAGATCA+TGG | 0.594031 | 7_3:+66902413 | None:intergenic |
| GTGAAGATCATGGTTGGCAG+TGG | 0.602943 | 7_3:+66902423 | None:intergenic |
| ACGTGCCTTCATACTTGTAG+AGG | 0.604965 | 7_3:-66903714 | Msa1118340:CDS |
| ATCTCAACCAGCTTAATCAA+AGG | 0.605125 | 7_3:+66901954 | None:intergenic |
| AACTTTGTCTCATCACCAGA+AGG | 0.613473 | 7_3:-66902490 | Msa1118340:CDS |
| CATACCATCTTGTGTAACCA+AGG | 0.634114 | 7_3:+66905702 | None:intergenic |
| GGAGGGTGGTGTTCTCAAGG+TGG | 0.638629 | 7_3:-66902226 | Msa1118340:CDS |
| AGATGCAGAACATAAAGATG+TGG | 0.654179 | 7_3:-66905905 | Msa1118340:CDS |
| TTCATACTTGTAGAGGAACA+TGG | 0.659977 | 7_3:-66903707 | Msa1118340:intron |
| ATACCATCTTGTGTAACCAA+GGG | 0.666206 | 7_3:+66905703 | None:intergenic |
| TGGGATGGGAAAATCTGCCG+AGG | 0.680932 | 7_3:-66902534 | Msa1118340:CDS |
| TTTATATCCAAACATGCACA+GGG | 0.687356 | 7_3:+66901629 | None:intergenic |
| TTGTGGGAGAGAGAGTGAGG+TGG | 0.714524 | 7_3:+66906236 | None:intergenic |
| AAGTTTGTAGGATCACATGG+AGG | 0.789481 | 7_3:-66902031 | Msa1118340:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTATTAATTGAATAGAAAAT+TGG | - | chr7_3:66903580-66903599 | Msa1118340:intron | 10.0% |
| !! | TATTAATTGAATAGAAAATT+GGG | - | chr7_3:66903581-66903600 | Msa1118340:intron | 10.0% |
| !!! | TCATTATAATTTTTTAATAG+TGG | - | chr7_3:66903854-66903873 | Msa1118340:intron | 10.0% |
| !! | TAAATATTATCATATATAAG+TGG | - | chr7_3:66904593-66904612 | Msa1118340:intron | 10.0% |
| !! | TAATATATATATCAAGAATT+TGG | + | chr7_3:66904681-66904700 | None:intergenic | 10.0% |
| !!! | TTATGATTTTTATAAAAATG+TGG | - | chr7_3:66904915-66904934 | Msa1118340:intron | 10.0% |
| !!! | TATGATTTTTATAAAAATGT+GGG | - | chr7_3:66904916-66904935 | Msa1118340:intron | 10.0% |
| !!! | TGTTAATGATTGATTTAAAT+TGG | - | chr7_3:66902529-66902548 | Msa1118340:CDS | 15.0% |
| !!! | TTTTTTGCTAAGTAATTTAA+GGG | - | chr7_3:66902975-66902994 | Msa1118340:intron | 15.0% |
| !! | TGATTCTATAAAATATGATT+AGG | - | chr7_3:66903017-66903036 | Msa1118340:intron | 15.0% |
| !! | GATTCTATAAAATATGATTA+GGG | - | chr7_3:66903018-66903037 | Msa1118340:intron | 15.0% |
| !!! | TTTATTGTCATTTGTTTAAT+TGG | - | chr7_3:66903089-66903108 | Msa1118340:intron | 15.0% |
| !! | AAATAGATAAATACTAATCT+TGG | + | chr7_3:66903452-66903471 | None:intergenic | 15.0% |
| !! | AATATAACCTTCAAATTATT+AGG | - | chr7_3:66903608-66903627 | Msa1118340:intron | 15.0% |
| !! | AAATAATCCTAATAATTTGA+AGG | + | chr7_3:66903618-66903637 | None:intergenic | 15.0% |
| !!! | AAAGAAATTTTTTTCTAGTT+AGG | - | chr7_3:66903763-66903782 | Msa1118340:CDS | 15.0% |
| !! | AAATAAATCTCATTTATTTG+CGG | + | chr7_3:66904006-66904025 | None:intergenic | 15.0% |
| !! | TGAATATTTAATAAGTTTGT+AGG | + | chr7_3:66904033-66904052 | None:intergenic | 15.0% |
| !! | ATTATGCAAAGTTAATAATT+TGG | + | chr7_3:66904495-66904514 | None:intergenic | 15.0% |
| !! | AAAGTTTGAATCAAAATAAT+TGG | + | chr7_3:66904644-66904663 | None:intergenic | 15.0% |
| !! | TTATAAAAATCATAATGTGT+GGG | + | chr7_3:66904910-66904929 | None:intergenic | 15.0% |
| !! | TTTATAAAAATCATAATGTG+TGG | + | chr7_3:66904911-66904930 | None:intergenic | 15.0% |
| !!! | ATGATTTTTATAAAAATGTG+GGG | - | chr7_3:66904917-66904936 | Msa1118340:intron | 15.0% |
| !! | AAGACAATATACAAAAAATT+AGG | - | chr7_3:66906142-66906161 | Msa1118340:CDS | 15.0% |
| !!! | TTTAATTTGATGTACAATTA+TGG | - | chr7_3:66906197-66906216 | Msa1118340:exon | 15.0% |
| !!! | TTAATTTGATGTACAATTAT+GGG | - | chr7_3:66906198-66906217 | Msa1118340:exon | 15.0% |
| !!! | TTAATGATGCAAATTTTGTT+GGG | + | chr7_3:66901684-66901703 | None:intergenic | 20.0% |
| !! | GAGAAAAAAGAATAATATTG+AGG | + | chr7_3:66901854-66901873 | None:intergenic | 20.0% |
| !! | TGAATCAAATAGTAGTTATT+TGG | + | chr7_3:66902048-66902067 | None:intergenic | 20.0% |
| !! | CAAATGTCATATAGTAATTA+AGG | + | chr7_3:66902323-66902342 | None:intergenic | 20.0% |
| !!! | TTTAATTTCCTTAAATCTCT+TGG | - | chr7_3:66902864-66902883 | Msa1118340:intron | 20.0% |
| !!! | CTTTTTTGCTAAGTAATTTA+AGG | - | chr7_3:66902974-66902993 | Msa1118340:intron | 20.0% |
| !!! | TTTTTGCTAAGTAATTTAAG+GGG | - | chr7_3:66902976-66902995 | Msa1118340:intron | 20.0% |
| !!! | TCATATTTTATAGAATCACA+TGG | + | chr7_3:66903015-66903034 | None:intergenic | 20.0% |
| !! | GAATTGATCAAAACAATATA+AGG | + | chr7_3:66903723-66903742 | None:intergenic | 20.0% |
| !! | AAAAATTTATGTGATGTACT+GGG | + | chr7_3:66903907-66903926 | None:intergenic | 20.0% |
| !! | AAAAAATTTATGTGATGTAC+TGG | + | chr7_3:66903908-66903927 | None:intergenic | 20.0% |
| !! | TTATTATATACCATCATTGT+GGG | + | chr7_3:66904064-66904083 | None:intergenic | 20.0% |
| !! | CATAAACAAAAGAAAACAAA+GGG | + | chr7_3:66904366-66904385 | None:intergenic | 20.0% |
| !! | ACATAAACAAAAGAAAACAA+AGG | + | chr7_3:66904367-66904386 | None:intergenic | 20.0% |
| !!! | TTCTTTTGTTTATGTTTACT+AGG | - | chr7_3:66904372-66904391 | Msa1118340:intron | 20.0% |
| !!! | CAGAATAAAAAAAACTTTTC+TGG | - | chr7_3:66904414-66904433 | Msa1118340:intron | 20.0% |
| !! | TAATTTCTTACTCTTAACAA+AGG | - | chr7_3:66904511-66904530 | Msa1118340:intron | 20.0% |
| !!! | TGATTTTTATAAAAATGTGG+GGG | - | chr7_3:66904918-66904937 | Msa1118340:intron | 20.0% |
| !! | ACTTAAAGATTATAGGAAAA+TGG | - | chr7_3:66905638-66905657 | Msa1118340:intron | 20.0% |
| !! | TTTGTTAAACAAAATTCTCA+TGG | - | chr7_3:66905869-66905888 | Msa1118340:CDS | 20.0% |
| !! | TCAATTAAATGGAAATCAAA+TGG | + | chr7_3:66906113-66906132 | None:intergenic | 20.0% |
| !! | TTTACAAGTGATCAATTAAA+TGG | + | chr7_3:66906124-66906143 | None:intergenic | 20.0% |
| !! | TAATGATGCAAATTTTGTTG+GGG | + | chr7_3:66901683-66901702 | None:intergenic | 25.0% |
| !! | GTTAATGATGCAAATTTTGT+TGG | + | chr7_3:66901685-66901704 | None:intergenic | 25.0% |
| ! | TAAAGAGAGAGAAAAATTGT+GGG | + | chr7_3:66901774-66901793 | None:intergenic | 25.0% |
| ! | ATAAAGAGAGAGAAAAATTG+TGG | + | chr7_3:66901775-66901794 | None:intergenic | 25.0% |
| !! | TTTTGCAATTTTCTCTCAAA+TGG | - | chr7_3:66901795-66901814 | Msa1118340:three_prime_UTR | 25.0% |
| !! | TTTGCAATTTTCTCTCAAAT+GGG | - | chr7_3:66901796-66901815 | Msa1118340:three_prime_UTR | 25.0% |
| ! | AATATTCATGTTTACCTTCA+TGG | - | chr7_3:66901825-66901844 | Msa1118340:three_prime_UTR | 25.0% |
| ! | TCAAGTAAGCAAAAGTAATT+GGG | + | chr7_3:66901966-66901985 | None:intergenic | 25.0% |
| ! | ATCAAGTAAGCAAAAGTAAT+TGG | + | chr7_3:66901967-66901986 | None:intergenic | 25.0% |
| ! | TAACTACTATTTGATTCACA+TGG | - | chr7_3:66902050-66902069 | Msa1118340:three_prime_UTR | 25.0% |
| !! | TATTTGATTCACATGGATTA+TGG | - | chr7_3:66902057-66902076 | Msa1118340:three_prime_UTR | 25.0% |
| ! | CTAGATTGCAATTATATACA+AGG | - | chr7_3:66902412-66902431 | Msa1118340:CDS | 25.0% |
| !!! | TTGCTTATGCATTGTTTTAT+TGG | - | chr7_3:66902466-66902485 | Msa1118340:CDS | 25.0% |
| ! | TTGTGAAATGATCTTAACTA+TGG | - | chr7_3:66902491-66902510 | Msa1118340:CDS | 25.0% |
| ! | CAGATCTGAAAATTCAAAAA+AGG | + | chr7_3:66902561-66902580 | None:intergenic | 25.0% |
| ! | TGTATGAAATTAATATCCCT+TGG | + | chr7_3:66902605-66902624 | None:intergenic | 25.0% |
| ! | TGAAATTAGTACAAATCACA+AGG | + | chr7_3:66902700-66902719 | None:intergenic | 25.0% |
| ! | ACCAAATATCTGATTTATTG+AGG | + | chr7_3:66902795-66902814 | None:intergenic | 25.0% |
| ! | TCAATAAATCAGATATTTGG+TGG | - | chr7_3:66902794-66902813 | Msa1118340:intron | 25.0% |
| ! | AAAATAAGCCAAGAGATTTA+AGG | + | chr7_3:66902875-66902894 | None:intergenic | 25.0% |
| !! | TTAAATCTCTTGGCTTATTT+TGG | - | chr7_3:66902874-66902893 | Msa1118340:intron | 25.0% |
| ! | AATTTAAGGGGATATATATG+TGG | - | chr7_3:66902988-66903007 | Msa1118340:intron | 25.0% |
| ! | ATGTCGAATATGTTCTAATA+AGG | + | chr7_3:66903122-66903141 | None:intergenic | 25.0% |
| ! | TTAAACTATCAATACTGTTC+TGG | - | chr7_3:66903259-66903278 | Msa1118340:intron | 25.0% |
| ! | AACAATTTATTCGTTAGTCA+TGG | - | chr7_3:66903305-66903324 | Msa1118340:intron | 25.0% |
| ! | AGATAAATACTAATCTTGGT+GGG | + | chr7_3:66903448-66903467 | None:intergenic | 25.0% |
| ! | TAGATAAATACTAATCTTGG+TGG | + | chr7_3:66903449-66903468 | None:intergenic | 25.0% |
| !! | GATGAATTTTATGGAAAATG+TGG | - | chr7_3:66903532-66903551 | Msa1118340:intron | 25.0% |
| ! | TTAGAGATTGAGTACTTATT+AGG | + | chr7_3:66903882-66903901 | None:intergenic | 25.0% |
| ! | GTAATGATATAGAGATTGAT+AGG | + | chr7_3:66903950-66903969 | None:intergenic | 25.0% |
| ! | TATTATATACCATCATTGTG+GGG | + | chr7_3:66904063-66904082 | None:intergenic | 25.0% |
| ! | CTTATTATATACCATCATTG+TGG | + | chr7_3:66904065-66904084 | None:intergenic | 25.0% |
| !! | CATGTGTATTTTCCAATTTA+AGG | + | chr7_3:66904099-66904118 | None:intergenic | 25.0% |
| ! | AAAAGAAAACAAAGGGAAAA+AGG | + | chr7_3:66904359-66904378 | None:intergenic | 25.0% |
| !!! | CATATATAAGTGGTGTTATA+CGG | - | chr7_3:66904603-66904622 | Msa1118340:intron | 25.0% |
| !! | ATCAAAATAATTGGTTCTTG+TGG | + | chr7_3:66904635-66904654 | None:intergenic | 25.0% |
| ! | ATAATACTTACAACACATGT+TGG | + | chr7_3:66904712-66904731 | None:intergenic | 25.0% |
| ! | AAGTATTATTAGACAAGTAG+TGG | - | chr7_3:66904723-66904742 | Msa1118340:intron | 25.0% |
| ! | AGTATTATTAGACAAGTAGT+GGG | - | chr7_3:66904724-66904743 | Msa1118340:intron | 25.0% |
| ! | GATCAATATTCACAAAATTC+AGG | - | chr7_3:66905387-66905406 | Msa1118340:intron | 25.0% |
| !!! | ATTTTCTGAGTATTGCATTA+TGG | - | chr7_3:66905437-66905456 | Msa1118340:intron | 25.0% |
| !!! | TTTTCTGAGTATTGCATTAT+GGG | - | chr7_3:66905438-66905457 | Msa1118340:intron | 25.0% |
| !!! | TTAGGTTGAAACAGTTTTTT+TGG | - | chr7_3:66906160-66906179 | Msa1118340:CDS | 25.0% |
| ! | TCAAATCAATATAGTCTCTT+TGG | + | chr7_3:66906250-66906269 | None:intergenic | 25.0% |
| !! | CTTACAGATTGTTTAGAATT+TGG | + | chr7_3:66906296-66906315 | None:intergenic | 25.0% |
| ! | CAAATTCTAAACAATCTGTA+AGG | - | chr7_3:66906294-66906313 | Msa1118340:five_prime_UTR | 25.0% |
| ! | CAGAAATCTTCAAATAAACT+TGG | + | chr7_3:66906335-66906354 | None:intergenic | 25.0% |
| ATTATAGTGTGAGTGGAATT+AGG | + | chr7_3:66901653-66901672 | None:intergenic | 30.0% | |
| !!! | TGAGAGTGTTGTATTTTCAA+TGG | + | chr7_3:66901707-66901726 | None:intergenic | 30.0% |
| GAAGATGCTGTGTAAATAAA+GGG | + | chr7_3:66901730-66901749 | None:intergenic | 30.0% | |
| AGAAGATGCTGTGTAAATAA+AGG | + | chr7_3:66901731-66901750 | None:intergenic | 30.0% | |
| TAATATTGAGGTTACCATGA+AGG | + | chr7_3:66901842-66901861 | None:intergenic | 30.0% | |
| TTTCAAGGTTGAGATTTGAA+GGG | + | chr7_3:66901896-66901915 | None:intergenic | 30.0% | |
| AGTAATTGGGTATGTTATGT+TGG | + | chr7_3:66901953-66901972 | None:intergenic | 30.0% | |
| !!! | ATCCTGTTTTTAGTCAAGTT+GGG | - | chr7_3:66902127-66902146 | Msa1118340:CDS | 30.0% |
| CCTCTATAAGTTACCAAATT+AGG | + | chr7_3:66902174-66902193 | None:intergenic | 30.0% | |
| ! | CCTAATTTGGTAACTTATAG+AGG | - | chr7_3:66902171-66902190 | Msa1118340:CDS | 30.0% |
| GCCTCAATAAATCAGATATT+TGG | - | chr7_3:66902791-66902810 | Msa1118340:intron | 30.0% | |
| GTGTATAGTTTGAAAGATGT+TGG | + | chr7_3:66902841-66902860 | None:intergenic | 30.0% | |
| ACATCTTTCAAACTATACAC+AGG | - | chr7_3:66902841-66902860 | Msa1118340:intron | 30.0% | |
| ! | ATGTATTTTGTGACAACTCA+TGG | + | chr7_3:66903047-66903066 | None:intergenic | 30.0% |
| ATGAGTTGTCACAAAATACA+TGG | - | chr7_3:66903046-66903065 | Msa1118340:intron | 30.0% | |
| ATATTCGACATCTTGTCTAT+TGG | - | chr7_3:66903131-66903150 | Msa1118340:intron | 30.0% | |
| TGGTTGGATTTAGAGATTTA+AGG | - | chr7_3:66903235-66903254 | Msa1118340:intron | 30.0% | |
| ATTTATTCGTTAGTCATGGA+AGG | - | chr7_3:66903309-66903328 | Msa1118340:intron | 30.0% | |
| AGTCATGGAAGGTAATTTAA+TGG | - | chr7_3:66903320-66903339 | Msa1118340:intron | 30.0% | |
| AAGGTAATTTAATGGTAGCT+AGG | - | chr7_3:66903328-66903347 | Msa1118340:intron | 30.0% | |
| ! | CTCTTGCATGATGAATTTTA+TGG | - | chr7_3:66903523-66903542 | Msa1118340:intron | 30.0% |
| ! | ATTTTATGGAAAATGTGGTG+TGG | - | chr7_3:66903537-66903556 | Msa1118340:intron | 30.0% |
| ! | TTTTATGGAAAATGTGGTGT+GGG | - | chr7_3:66903538-66903557 | Msa1118340:intron | 30.0% |
| TATTTCCCAAGAAAATCGAA+AGG | - | chr7_3:66903633-66903652 | Msa1118340:intron | 30.0% | |
| ! | TCTTTCCTTTCGATTTTCTT+GGG | + | chr7_3:66903641-66903660 | None:intergenic | 30.0% |
| ! | ATCTTTCCTTTCGATTTTCT+TGG | + | chr7_3:66903642-66903661 | None:intergenic | 30.0% |
| TGATCAATTCTGTCCTTATA+TGG | - | chr7_3:66903733-66903752 | Msa1118340:CDS | 30.0% | |
| GATCAATTCTGTCCTTATAT+GGG | - | chr7_3:66903734-66903753 | Msa1118340:CDS | 30.0% | |
| ATCAATTCTGTCCTTATATG+GGG | - | chr7_3:66903735-66903754 | Msa1118340:CDS | 30.0% | |
| TTCTTTATTCTCCCCATATA+AGG | + | chr7_3:66903749-66903768 | None:intergenic | 30.0% | |
| AGAGATTGATAGGTGATTAA+TGG | + | chr7_3:66903940-66903959 | None:intergenic | 30.0% | |
| ! | GTGTATTTTCCAATTTAAGG+AGG | + | chr7_3:66904096-66904115 | None:intergenic | 30.0% |
| GATGATAATCCATGTACATA+TGG | - | chr7_3:66904141-66904160 | Msa1118340:intron | 30.0% | |
| TAATCCATGTACATATGGTA+TGG | - | chr7_3:66904146-66904165 | Msa1118340:intron | 30.0% | |
| GAACATGGTACATACATAAA+CGG | - | chr7_3:66904299-66904318 | Msa1118340:intron | 30.0% | |
| TTTAAACTCGAAACCAGTAA+AGG | - | chr7_3:66904461-66904480 | Msa1118340:intron | 30.0% | |
| ! | TTTGGAATAGATTCCTTTAC+TGG | + | chr7_3:66904477-66904496 | None:intergenic | 30.0% |
| GTATTATTAGACAAGTAGTG+GGG | - | chr7_3:66904725-66904744 | Msa1118340:intron | 30.0% | |
| !! | TAATATGTTCCCAGTTTTGA+TGG | + | chr7_3:66904777-66904796 | None:intergenic | 30.0% |
| TGGGAACATATTACATGATA+AGG | - | chr7_3:66904784-66904803 | Msa1118340:intron | 30.0% | |
| GGGAACATATTACATGATAA+GGG | - | chr7_3:66904785-66904804 | Msa1118340:intron | 30.0% | |
| GGAACATATTACATGATAAG+GGG | - | chr7_3:66904786-66904805 | Msa1118340:intron | 30.0% | |
| AAAAATCATAATGTGTGGGA+GGG | + | chr7_3:66904906-66904925 | None:intergenic | 30.0% | |
| TAAAAATCATAATGTGTGGG+AGG | + | chr7_3:66904907-66904926 | None:intergenic | 30.0% | |
| !! | TATGTTAGTCTTAGAAATCG+TGG | - | chr7_3:66904963-66904982 | Msa1118340:intron | 30.0% |
| ACCATCTTAGAAATTGTGAT+TGG | - | chr7_3:66905159-66905178 | Msa1118340:intron | 30.0% | |
| CCATCTTAGAAATTGTGATT+GGG | - | chr7_3:66905160-66905179 | Msa1118340:intron | 30.0% | |
| ! | CATTGTAGATGCAATTTTAG+AGG | + | chr7_3:66905340-66905359 | None:intergenic | 30.0% |
| AGACAAAGTTAGTATAGTAG+AGG | + | chr7_3:66905491-66905510 | None:intergenic | 30.0% | |
| AAGTAATGTAGTGAAGATCA+TGG | + | chr7_3:66905581-66905600 | None:intergenic | 30.0% | |
| ATGATCTTCACTACATTACT+TGG | - | chr7_3:66905580-66905599 | Msa1118340:intron | 30.0% | |
| TGATCTTCACTACATTACTT+GGG | - | chr7_3:66905581-66905600 | Msa1118340:intron | 30.0% | |
| !! | CTCTAGGACTTAAAGATTAT+AGG | - | chr7_3:66905631-66905650 | Msa1118340:intron | 30.0% |
| !! | TTGATAGAGATCTTTTGAAG+AGG | - | chr7_3:66905721-66905740 | Msa1118340:CDS | 30.0% |
| !! | AGATCTTTTGAAGAGGTATA+AGG | - | chr7_3:66905728-66905747 | Msa1118340:CDS | 30.0% |
| !! | GATCTTTTGAAGAGGTATAA+GGG | - | chr7_3:66905729-66905748 | Msa1118340:CDS | 30.0% |
| !! | ATCTTTTGAAGAGGTATAAG+GGG | - | chr7_3:66905730-66905749 | Msa1118340:CDS | 30.0% |
| !! | AATTATGGTTTGCTTAAACC+CGG | - | chr7_3:66905822-66905841 | Msa1118340:CDS | 30.0% |
| ATTTGATGTACAATTATGGG+TGG | - | chr7_3:66906201-66906220 | Msa1118340:five_prime_UTR | 30.0% | |
| TTTGATGTACAATTATGGGT+GGG | - | chr7_3:66906202-66906221 | Msa1118340:five_prime_UTR | 30.0% | |
| TTTATATCCAAACATGCACA+GGG | + | chr7_3:66906365-66906384 | None:intergenic | 30.0% | |
| ATTTATATCCAAACATGCAC+AGG | + | chr7_3:66906366-66906385 | None:intergenic | 30.0% | |
| TGAGGATATTATAGTGTGAG+TGG | + | chr7_3:66901660-66901679 | None:intergenic | 35.0% | |
| !! | TTTGAAGGGTTAGTCTTGTA+GGG | + | chr7_3:66901882-66901901 | None:intergenic | 35.0% |
| !! | ATTTGAAGGGTTAGTCTTGT+AGG | + | chr7_3:66901883-66901902 | None:intergenic | 35.0% |
| GTTTCAAGGTTGAGATTTGA+AGG | + | chr7_3:66901897-66901916 | None:intergenic | 35.0% | |
| !! | GGTATGTTATGTTGGTTCTT+AGG | + | chr7_3:66901945-66901964 | None:intergenic | 35.0% |
| GTGATACTGTGAAGCTAAAA+AGG | - | chr7_3:66902001-66902020 | Msa1118340:three_prime_UTR | 35.0% | |
| ACATCTTTATGTTCTGCATC+TGG | + | chr7_3:66902087-66902106 | None:intergenic | 35.0% | |
| AGATGCAGAACATAAAGATG+TGG | - | chr7_3:66902086-66902105 | Msa1118340:exon | 35.0% | |
| TAAAGATGTGGCAGAATATG+TGG | - | chr7_3:66902098-66902117 | Msa1118340:CDS | 35.0% | |
| !!! | GATCCTGTTTTTAGTCAAGT+TGG | - | chr7_3:66902126-66902145 | Msa1118340:CDS | 35.0% |
| TTCCCAACTTGACTAAAAAC+AGG | + | chr7_3:66902132-66902151 | None:intergenic | 35.0% | |
| !! | TTAGTCAAGTTGGGAATGTT+TGG | - | chr7_3:66902136-66902155 | Msa1118340:CDS | 35.0% |
| TTGGGAATGTTTGGATTGTT+GGG | - | chr7_3:66902145-66902164 | Msa1118340:CDS | 35.0% | |
| TGCTTCTTAAGACATGTCAT+TGG | - | chr7_3:66902232-66902251 | Msa1118340:CDS | 35.0% | |
| GCTTCTTAAGACATGTCATT+GGG | - | chr7_3:66902233-66902252 | Msa1118340:CDS | 35.0% | |
| TTAAGACATGTCATTGGGAT+TGG | - | chr7_3:66902238-66902257 | Msa1118340:CDS | 35.0% | |
| ATACCATCTTGTGTAACCAA+GGG | + | chr7_3:66902291-66902310 | None:intergenic | 35.0% | |
| !!! | TCTGATCCAAGTTTTTTCTG+AGG | - | chr7_3:66902577-66902596 | Msa1118340:CDS | 35.0% |
| ATACAACATAGTAGTCGCTT+GGG | - | chr7_3:66902620-66902639 | Msa1118340:intron | 35.0% | |
| CGCTCTCTTATTGCTAAAAT+TGG | + | chr7_3:66902740-66902759 | None:intergenic | 35.0% | |
| GAAGCCAATGATTATAGATC+CGG | - | chr7_3:66902759-66902778 | Msa1118340:intron | 35.0% | |
| AAGCCAATGATTATAGATCC+GGG | - | chr7_3:66902760-66902779 | Msa1118340:intron | 35.0% | |
| TTATTGAGGCTATAAAGTCC+CGG | + | chr7_3:66902781-66902800 | None:intergenic | 35.0% | |
| ! | TTTGGTGGATCATTAAGCAA+AGG | - | chr7_3:66902809-66902828 | Msa1118340:intron | 35.0% |
| GATAACATGCGTGTAATGAA+GGG | + | chr7_3:66902950-66902969 | None:intergenic | 35.0% | |
| AGATAACATGCGTGTAATGA+AGG | + | chr7_3:66902951-66902970 | None:intergenic | 35.0% | |
| GTAATTTAATGGTAGCTAGG+TGG | - | chr7_3:66903331-66903350 | Msa1118340:intron | 35.0% | |
| GAGCATTCATGTGTATAATG+TGG | - | chr7_3:66903362-66903381 | Msa1118340:intron | 35.0% | |
| !!! | CAATTTTTTCCCCACAATGA+TGG | - | chr7_3:66904051-66904070 | Msa1118340:intron | 35.0% |
| GTATAAGTGCCTCCTTAAAT+TGG | - | chr7_3:66904084-66904103 | Msa1118340:intron | 35.0% | |
| ATCACCATACCATATGTACA+TGG | + | chr7_3:66904153-66904172 | None:intergenic | 35.0% | |
| ATGTACATATGGTATGGTGA+TGG | - | chr7_3:66904152-66904171 | Msa1118340:intron | 35.0% | |
| AAATAATTGCATCAGCCATC+AGG | + | chr7_3:66904226-66904245 | None:intergenic | 35.0% | |
| ATGTTCCTCTACAAGTATGA+AGG | + | chr7_3:66904285-66904304 | None:intergenic | 35.0% | |
| TTCATACTTGTAGAGGAACA+TGG | - | chr7_3:66904284-66904303 | Msa1118340:intron | 35.0% | |
| TGATAAGGGGAAACAAAAGA+AGG | - | chr7_3:66904799-66904818 | Msa1118340:intron | 35.0% | |
| !! | TTAGTCTTAGAAATCGTGGT+TGG | - | chr7_3:66904967-66904986 | Msa1118340:intron | 35.0% |
| ! | TAGTCTTAGAAATCGTGGTT+GGG | - | chr7_3:66904968-66904987 | Msa1118340:intron | 35.0% |
| AAGCCTCTTCAAGATTCAAT+GGG | + | chr7_3:66905135-66905154 | None:intergenic | 35.0% | |
| AAAGCCTCTTCAAGATTCAA+TGG | + | chr7_3:66905136-66905155 | None:intergenic | 35.0% | |
| ! | CCCAATCACAATTTCTAAGA+TGG | + | chr7_3:66905163-66905182 | None:intergenic | 35.0% |
| AAACTGTTAAGAGTCCACAT+CGG | + | chr7_3:66905237-66905256 | None:intergenic | 35.0% | |
| AATAGTCTATTCCATTGCCT+TGG | + | chr7_3:66905273-66905292 | None:intergenic | 35.0% | |
| ! | TGAGTATTGCATTATGGGAT+GGG | - | chr7_3:66905443-66905462 | Msa1118340:intron | 35.0% |
| ACTGTTTGGAAATATCCTTC+TGG | + | chr7_3:66905519-66905538 | None:intergenic | 35.0% | |
| GTGAGTTGCATATTACTGTT+TGG | + | chr7_3:66905533-66905552 | None:intergenic | 35.0% | |
| AATGTAGTGAAGATCATGGT+TGG | + | chr7_3:66905577-66905596 | None:intergenic | 35.0% | |
| !! | TGAATTTTCTAGCGAAAGGA+CGG | + | chr7_3:66905674-66905693 | None:intergenic | 35.0% |
| !! | CTCTTGAATTTTCTAGCGAA+AGG | + | chr7_3:66905678-66905697 | None:intergenic | 35.0% |
| !! | TCTTTTGAAGAGGTATAAGG+GGG | - | chr7_3:66905731-66905750 | Msa1118340:CDS | 35.0% |
| ! | TATAAGGGGGGATTTTCTTT+TGG | - | chr7_3:66905744-66905763 | Msa1118340:CDS | 35.0% |
| GGTTTGAGAACTGAGAATTA+TGG | - | chr7_3:66905807-66905826 | Msa1118340:CDS | 35.0% | |
| ATGTTTACCTACACTGCATT+TGG | + | chr7_3:66905908-66905927 | None:intergenic | 35.0% | |
| AAAGGTCTCAAGTTCGAATA+CGG | + | chr7_3:66906022-66906041 | None:intergenic | 35.0% | |
| ATCTCAACCAGCTTAATCAA+AGG | + | chr7_3:66906040-66906059 | None:intergenic | 35.0% | |
| TTGATTAAGCTGGTTGAGAT+CGG | - | chr7_3:66906040-66906059 | Msa1118340:CDS | 35.0% | |
| ! | ATGCAAATTTTGTTGGGGTG+AGG | + | chr7_3:66901678-66901697 | None:intergenic | 40.0% |
| AACCTTGAAACCTAGTGCTA+TGG | - | chr7_3:66901906-66901925 | Msa1118340:three_prime_UTR | 40.0% | |
| TTGAAGTAGTCCATAGCACT+AGG | + | chr7_3:66901919-66901938 | None:intergenic | 40.0% | |
| TACTTGATCTCTGCATCCAA+AGG | - | chr7_3:66901979-66901998 | Msa1118340:three_prime_UTR | 40.0% | |
| TAGCTTCACAGTATCACCTT+TGG | + | chr7_3:66901998-66902017 | None:intergenic | 40.0% | |
| GTTGGGAATGTTTGGATTGT+TGG | - | chr7_3:66902144-66902163 | Msa1118340:CDS | 40.0% | |
| GATTGTTGGGAAGCCTAATT+TGG | - | chr7_3:66902158-66902177 | Msa1118340:CDS | 40.0% | |
| AGAGTAGTTGCAAGCATAGT+TGG | + | chr7_3:66902198-66902217 | None:intergenic | 40.0% | |
| TGCAACTACTCTTCATGCTA+TGG | - | chr7_3:66902206-66902225 | Msa1118340:CDS | 40.0% | |
| TAGTGCTTCTGATTATCCCT+TGG | - | chr7_3:66902272-66902291 | Msa1118340:CDS | 40.0% | |
| TATCCCTTGGTTACACAAGA+TGG | - | chr7_3:66902285-66902304 | Msa1118340:CDS | 40.0% | |
| CATACCATCTTGTGTAACCA+AGG | + | chr7_3:66902292-66902311 | None:intergenic | 40.0% | |
| CTTGGTTACACAAGATGGTA+TGG | - | chr7_3:66902290-66902309 | Msa1118340:CDS | 40.0% | |
| TTGGCACCTCAGAAAAAACT+TGG | + | chr7_3:66902586-66902605 | None:intergenic | 40.0% | |
| !!! | AAGTTTTTTCTGAGGTGCCA+AGG | - | chr7_3:66902585-66902604 | Msa1118340:CDS | 40.0% |
| !!! | AGTTTTTTCTGAGGTGCCAA+GGG | - | chr7_3:66902586-66902605 | Msa1118340:intron | 40.0% |
| CATACAACATAGTAGTCGCT+TGG | - | chr7_3:66902619-66902638 | Msa1118340:intron | 40.0% | |
| AGTCCCGGATCTATAATCAT+TGG | + | chr7_3:66902766-66902785 | None:intergenic | 40.0% | |
| TGTTCAGAAGTTGCGTGTTA+TGG | - | chr7_3:66903215-66903234 | Msa1118340:intron | 40.0% | |
| AGGCACTCAACTACATAGTT+AGG | + | chr7_3:66903403-66903422 | None:intergenic | 40.0% | |
| ! | TACTAATCTTGGTGGGTAAG+AGG | + | chr7_3:66903441-66903460 | None:intergenic | 40.0% |
| !! | ATATGGTATGGTGATGGTGA+TGG | - | chr7_3:66904158-66904177 | Msa1118340:intron | 40.0% |
| !! | TGTGCAGTGTCTATTTCTAG+TGG | - | chr7_3:66904191-66904210 | Msa1118340:intron | 40.0% |
| GTTACTTGAGTCAAGTGACT+TGG | - | chr7_3:66904533-66904552 | Msa1118340:intron | 40.0% | |
| GGTGCAAAAAGAGGAACTTA+TGG | - | chr7_3:66904746-66904765 | Msa1118340:intron | 40.0% | |
| ! | TATGGCTTGTCCATCAAAAC+TGG | - | chr7_3:66904764-66904783 | Msa1118340:intron | 40.0% |
| ! | ATGGCTTGTCCATCAAAACT+GGG | - | chr7_3:66904765-66904784 | Msa1118340:intron | 40.0% |
| AAGGGGAAACAAAAGAAGGT+TGG | - | chr7_3:66904803-66904822 | Msa1118340:intron | 40.0% | |
| !! | CAGTTTTGTGGGATTGTGTT+AGG | + | chr7_3:66904994-66905013 | None:intergenic | 40.0% |
| CTAACACAATCCCACAAAAC+TGG | - | chr7_3:66904992-66905011 | Msa1118340:intron | 40.0% | |
| !! | ACCTCACAAACCAGTTTTGT+GGG | + | chr7_3:66905005-66905024 | None:intergenic | 40.0% |
| ! | GTTTGCTTGATTTTGTGCCA+AGG | - | chr7_3:66905253-66905272 | Msa1118340:intron | 40.0% |
| ! | TTGATTTTGTGCCAAGGCAA+TGG | - | chr7_3:66905259-66905278 | Msa1118340:intron | 40.0% |
| ! | CACAAAATTCAGGTTCAGCT+TGG | - | chr7_3:66905397-66905416 | Msa1118340:intron | 40.0% |
| ! | CTGAGTATTGCATTATGGGA+TGG | - | chr7_3:66905442-66905461 | Msa1118340:intron | 40.0% |
| AACTTTGTCTCATCACCAGA+AGG | - | chr7_3:66905501-66905520 | Msa1118340:intron | 40.0% | |
| ATCCTCCAAAACAACATCCT+AGG | - | chr7_3:66905607-66905626 | Msa1118340:intron | 40.0% | |
| !! | AGAGACCTAGGATGTTGTTT+TGG | + | chr7_3:66905615-66905634 | None:intergenic | 40.0% |
| AAACAACATCCTAGGTCTCT+AGG | - | chr7_3:66905615-66905634 | Msa1118340:intron | 40.0% | |
| TCTTTAAGTCCTAGAGACCT+AGG | + | chr7_3:66905627-66905646 | None:intergenic | 40.0% | |
| !! | CTTTTGAAGAGGTATAAGGG+GGG | - | chr7_3:66905732-66905751 | Msa1118340:CDS | 40.0% |
| GGAAAGAACAAAGCATGTTC+AGG | - | chr7_3:66905786-66905805 | Msa1118340:CDS | 40.0% | |
| ! | TTTTTCGCCAAATGCAGTGT+AGG | - | chr7_3:66905898-66905917 | Msa1118340:CDS | 40.0% |
| ATCACACTGCTCAAGTTTGT+AGG | - | chr7_3:66905948-66905967 | Msa1118340:CDS | 40.0% | |
| CTCAAGTTTGTAGGATCACA+TGG | - | chr7_3:66905957-66905976 | Msa1118340:CDS | 40.0% | |
| AAGTTTGTAGGATCACATGG+AGG | - | chr7_3:66905960-66905979 | Msa1118340:CDS | 40.0% | |
| CTTGAGACCTTTGATTAAGC+TGG | - | chr7_3:66906030-66906049 | Msa1118340:CDS | 40.0% | |
| !!! | AGCACTTTTTTTGCGAGTGT+AGG | - | chr7_3:66906084-66906103 | Msa1118340:CDS | 40.0% |
| AAATTGTGGGAGAGAGAGTG+AGG | + | chr7_3:66901761-66901780 | None:intergenic | 45.0% | |
| GTCCATAGCACTAGGTTTCA+AGG | + | chr7_3:66901911-66901930 | None:intergenic | 45.0% | |
| AACATAGTAGTCGCTTGGGT+TGG | - | chr7_3:66902624-66902643 | Msa1118340:intron | 45.0% | |
| !! | CTTGGGTTGGAAATTGTGAG+TGG | - | chr7_3:66902637-66902656 | Msa1118340:intron | 45.0% |
| CGTGTAATGAAGGGAACAAG+AGG | + | chr7_3:66902941-66902960 | None:intergenic | 45.0% | |
| CAGAAGTTGCGTGTTATGGT+TGG | - | chr7_3:66903219-66903238 | Msa1118340:intron | 45.0% | |
| ! | TAATCTTGGTGGGTAAGAGG+AGG | + | chr7_3:66903438-66903457 | None:intergenic | 45.0% |
| ACGTGCCTTCATACTTGTAG+AGG | - | chr7_3:66904277-66904296 | Msa1118340:intron | 45.0% | |
| ! | AAGTAGTGGGGTGCAAAAAG+AGG | - | chr7_3:66904737-66904756 | Msa1118340:intron | 45.0% |
| !! | TCCCACAAAACTGGTTTGTG+AGG | - | chr7_3:66905001-66905020 | Msa1118340:intron | 45.0% |
| ! | CACCTCACAAACCAGTTTTG+TGG | + | chr7_3:66905006-66905025 | None:intergenic | 45.0% |
| AAGAGTCTCACATCGGAAGT+GGG | + | chr7_3:66905038-66905057 | None:intergenic | 45.0% | |
| TAAGAGTCTCACATCGGAAG+TGG | + | chr7_3:66905039-66905058 | None:intergenic | 45.0% | |
| GGGTGTTAAGAGTCTCACAT+CGG | + | chr7_3:66905045-66905064 | None:intergenic | 45.0% | |
| ! | GCTTGGTTCGTTGACATAAG+AGG | - | chr7_3:66905087-66905106 | Msa1118340:intron | 45.0% |
| TGGTTCGTTGACATAAGAGG+TGG | - | chr7_3:66905090-66905109 | Msa1118340:intron | 45.0% | |
| GGTTCGTTGACATAAGAGGT+GGG | - | chr7_3:66905091-66905110 | Msa1118340:intron | 45.0% | |
| TGGCCCATTGAATCTTGAAG+AGG | - | chr7_3:66905129-66905148 | Msa1118340:intron | 45.0% | |
| !! | ACCTCACAAGTCGGTTTTGT+GGG | + | chr7_3:66905197-66905216 | None:intergenic | 45.0% |
| !! | ACAAAACCGACTTGTGAGGT+GGG | - | chr7_3:66905197-66905216 | Msa1118340:intron | 45.0% |
| TAGTAGAGGAGTAGAGTCCT+CGG | + | chr7_3:66905477-66905496 | None:intergenic | 45.0% | |
| !!! | GACCTAGGATGTTGTTTTGG+AGG | + | chr7_3:66905612-66905631 | None:intergenic | 45.0% |
| ! | AAGGGGGGATTTTCTTTTGG+AGG | - | chr7_3:66905747-66905766 | Msa1118340:CDS | 45.0% |
| ! | AGGGGGGATTTTCTTTTGGA+GGG | - | chr7_3:66905748-66905767 | Msa1118340:CDS | 45.0% |
| ! | TTCTTTAGCCTTCTTGAGCC+AGG | + | chr7_3:66905849-66905868 | None:intergenic | 45.0% |
| GATCGGTATTGTCTCGTCTA+AGG | - | chr7_3:66906057-66906076 | Msa1118340:CDS | 45.0% | |
| ACTAGTTCCCTGTGCATGTT+TGG | - | chr7_3:66906355-66906374 | Msa1118340:five_prime_UTR | 45.0% | |
| !!! | ATTTTTTTTTTTTTTTTTGA+AGG | + | chr7_3:66903484-66903503 | None:intergenic | 5.0% |
| AGAGGAGGTTGTGGGGTTTA+AGG | + | chr7_3:66903423-66903442 | None:intergenic | 50.0% | |
| ! | TAGTGGATGCACATGCCTGA+TGG | - | chr7_3:66904208-66904227 | Msa1118340:intron | 50.0% |
| AGAGTCTCACATCGGAAGTG+GGG | + | chr7_3:66905037-66905056 | None:intergenic | 50.0% | |
| TCGTTGACATAAGAGGTGGG+TGG | - | chr7_3:66905094-66905113 | Msa1118340:intron | 50.0% | |
| !! | CGGTTTTGTGGGGTTGTGTT+AGG | + | chr7_3:66905186-66905205 | None:intergenic | 50.0% |
| !! | CCTCACAAGTCGGTTTTGTG+GGG | + | chr7_3:66905196-66905215 | None:intergenic | 50.0% |
| !! | CACCTCACAAGTCGGTTTTG+TGG | + | chr7_3:66905198-66905217 | None:intergenic | 50.0% |
| !! | CACAAAACCGACTTGTGAGG+TGG | - | chr7_3:66905196-66905215 | Msa1118340:intron | 50.0% |
| !! | CAAAACCGACTTGTGAGGTG+GGG | - | chr7_3:66905198-66905217 | Msa1118340:intron | 50.0% |
| GATTGCCTCTACTTCCGATG+TGG | - | chr7_3:66905220-66905239 | Msa1118340:intron | 50.0% | |
| AGAGTCCACATCGGAAGTAG+AGG | + | chr7_3:66905228-66905247 | None:intergenic | 50.0% | |
| GTGAAGATCATGGTTGGCAG+TGG | + | chr7_3:66905571-66905590 | None:intergenic | 50.0% | |
| !! | GGGGATTTTCTTTTGGAGGG+TGG | - | chr7_3:66905751-66905770 | Msa1118340:CDS | 50.0% |
| TTTGGAGGGTGGTGTTCTCA+AGG | - | chr7_3:66905762-66905781 | Msa1118340:CDS | 50.0% | |
| TTGTGGGAGAGAGAGTGAGG+TGG | + | chr7_3:66901758-66901777 | None:intergenic | 55.0% | |
| GTGGGTAAGAGGAGGTTGTG+GGG | + | chr7_3:66903430-66903449 | None:intergenic | 55.0% | |
| GGTGGGTAAGAGGAGGTTGT+GGG | + | chr7_3:66903431-66903450 | None:intergenic | 55.0% | |
| ! | TGGTGGGTAAGAGGAGGTTG+TGG | + | chr7_3:66903432-66903451 | None:intergenic | 55.0% |
| !! | AATAGTGCTGGTCGTGAGGG+GGG | + | chr7_3:66905065-66905084 | None:intergenic | 55.0% |
| !! | CAATAGTGCTGGTCGTGAGG+GGG | + | chr7_3:66905066-66905085 | None:intergenic | 55.0% |
| !! | CCAATAGTGCTGGTCGTGAG+GGG | + | chr7_3:66905067-66905086 | None:intergenic | 55.0% |
| !! | CCCAATAGTGCTGGTCGTGA+GGG | + | chr7_3:66905068-66905087 | None:intergenic | 55.0% |
| CCCTCACGACCAGCACTATT+GGG | - | chr7_3:66905065-66905084 | Msa1118340:intron | 55.0% | |
| ACGACCAGCACTATTGGGCT+TGG | - | chr7_3:66905070-66905089 | Msa1118340:intron | 55.0% | |
| CGAACCAAGCCCAATAGTGC+TGG | + | chr7_3:66905077-66905096 | None:intergenic | 55.0% | |
| TCAATGGGCCACCTGCTATC+AGG | + | chr7_3:66905120-66905139 | None:intergenic | 55.0% | |
| !! | CCCCACAAAACCGACTTGTG+AGG | - | chr7_3:66905193-66905212 | Msa1118340:intron | 55.0% |
| GCAATCCCCACCTCACAAGT+CGG | + | chr7_3:66905206-66905225 | None:intergenic | 55.0% | |
| TGGGATGGGAAAATCTGCCG+AGG | - | chr7_3:66905457-66905476 | Msa1118340:intron | 55.0% | |
| ! | GGTTTGCTTAAACCCGGTCC+TGG | - | chr7_3:66905828-66905847 | Msa1118340:CDS | 55.0% |
| TAGCCTTCTTGAGCCAGGAC+CGG | + | chr7_3:66905844-66905863 | None:intergenic | 55.0% | |
| TGGGAGAGAGAGTGAGGTGG+TGG | + | chr7_3:66901755-66901774 | None:intergenic | 60.0% | |
| CCCCTCACGACCAGCACTAT+TGG | - | chr7_3:66905064-66905083 | Msa1118340:intron | 60.0% | |
| !! | GCCCAATAGTGCTGGTCGTG+AGG | + | chr7_3:66905069-66905088 | None:intergenic | 60.0% |
| GGAGGGTGGTGTTCTCAAGG+TGG | - | chr7_3:66905765-66905784 | Msa1118340:CDS | 60.0% | |
| AACCCGGTCCTGGCTCAAGA+AGG | - | chr7_3:66905838-66905857 | Msa1118340:CDS | 60.0% | |
| AGCCTTCTTGAGCCAGGACC+GGG | + | chr7_3:66905843-66905862 | None:intergenic | 60.0% | |
| GAGGTGGGTGGCCTGATAGC+AGG | - | chr7_3:66905106-66905125 | Msa1118340:intron | 65.0% | |
| GTGGGTGGCCTGATAGCAGG+TGG | - | chr7_3:66905109-66905128 | Msa1118340:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_3 | gene | 66901621 | 66906392 | 66901621 | ID=Msa1118340;Name=Msa1118340 |
| chr7_3 | mRNA | 66901621 | 66906392 | 66901621 | ID=Msa1118340-mRNA-1;Parent=Msa1118340;Name=Msa1118340-mRNA-1;_AED=0.15;_eAED=0.15;_QI=193|0|0.66|0.66|1|1|3|469|375 |
| chr7_3 | exon | 66901621 | 66902604 | 66901621 | ID=Msa1118340-mRNA-1:exon:16319;Parent=Msa1118340-mRNA-1 |
| chr7_3 | exon | 66903708 | 66903822 | 66903708 | ID=Msa1118340-mRNA-1:exon:16318;Parent=Msa1118340-mRNA-1 |
| chr7_3 | exon | 66905702 | 66906392 | 66905702 | ID=Msa1118340-mRNA-1:exon:16317;Parent=Msa1118340-mRNA-1 |
| chr7_3 | five_prime_UTR | 66906200 | 66906392 | 66906200 | ID=Msa1118340-mRNA-1:five_prime_utr;Parent=Msa1118340-mRNA-1 |
| chr7_3 | CDS | 66905702 | 66906199 | 66905702 | ID=Msa1118340-mRNA-1:cds;Parent=Msa1118340-mRNA-1 |
| chr7_3 | CDS | 66903708 | 66903822 | 66903708 | ID=Msa1118340-mRNA-1:cds;Parent=Msa1118340-mRNA-1 |
| chr7_3 | CDS | 66902090 | 66902604 | 66902090 | ID=Msa1118340-mRNA-1:cds;Parent=Msa1118340-mRNA-1 |
| chr7_3 | three_prime_UTR | 66901621 | 66902089 | 66901621 | ID=Msa1118340-mRNA-1:three_prime_utr;Parent=Msa1118340-mRNA-1 |
| Gene Sequence |
| Protein sequence |
