AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0988010

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0988010 AT5G66420.3 90.000 30 3 0 1 30 531 560 7.13e-12 59.7
Msa0988010 AT5G66420.1 90.000 30 3 0 1 30 432 461 7.15e-12 59.7
Msa0988010 AT5G66420.2 90.000 30 3 0 1 30 531 560 7.20e-12 59.7

Find 76 sgRNAs with CRISPR-Local

Find 316 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCATTTGTTATTAAATATTT+TGG 0.103725 6_4:+40194450 None:intergenic
CCACAAATTGAGGTAAATTT+TGG 0.142358 6_4:-40196718 Msa0988010:five_prime_UTR
CAGAACACTCATGAACATTT+TGG 0.213611 6_4:+40195206 None:intergenic
GCGAAGGTAGGGGATTATTT+TGG 0.263628 6_4:+40196467 None:intergenic
GATAAAGGAATTCCTATAAT+AGG 0.278477 6_4:-40194714 Msa0988010:five_prime_UTR
AGATTATTATTTGATAGTTT+TGG 0.300773 6_4:-40194408 Msa0988010:CDS
CCAGCACCAGCTCCTATTAT+AGG 0.305607 6_4:+40194702 None:intergenic
AATGAATTCAAAATATTTCC+AGG 0.311264 6_4:-40196158 Msa0988010:intron
TCAGGGCGCTTCCGGATGGC+TGG 0.318709 6_4:-40194618 Msa0988010:exon
ACTAGTTGATGCATATTTAG+AGG 0.320863 6_4:-40195287 Msa0988010:five_prime_UTR
AGGATTTGGTGGAAGAATCT+TGG 0.345786 6_4:-40196030 Msa0988010:five_prime_UTR
TTGATACTTCGGATCACTAT+TGG 0.358536 6_4:-40195989 Msa0988010:intron
TGTACAACTCAGGGCGCTTC+CGG 0.367533 6_4:-40194626 Msa0988010:five_prime_UTR
TTTAAAGATCAGATAGATAA+AGG 0.376132 6_4:-40194729 Msa0988010:five_prime_UTR
ATTTCTATTGGCAGAAACTT+TGG 0.377740 6_4:-40194778 Msa0988010:intron
CCAAAATTTACCTCAATTTG+TGG 0.379224 6_4:+40196718 None:intergenic
GCCTCTATGCAAAGCTAAAT+CGG 0.379384 6_4:-40196370 Msa0988010:five_prime_UTR
TGATCTGTTGCAGATTTAGT+AGG 0.389539 6_4:-40196066 Msa0988010:intron
ATCTTAAACAAAATAAAATT+AGG 0.390744 6_4:-40196552 Msa0988010:five_prime_UTR
CCTATAATAGGAGCTGGTGC+TGG 0.408791 6_4:-40194702 Msa0988010:five_prime_UTR
CAAAGATCTCATAGGTGGTT+AGG 0.421557 6_4:+40196423 None:intergenic
TCCTCCAGCTTCTTCAAACT+TGG 0.422732 6_4:+40194665 None:intergenic
GGATTTGGTGGAAGAATCTT+GGG 0.434255 6_4:-40196029 Msa0988010:five_prime_UTR
ATCGAAACTCCCACAAATTG+AGG 0.439154 6_4:-40196728 Msa0988010:five_prime_UTR
CAAATAATAATCTATGTGGC+AGG 0.441035 6_4:+40194418 None:intergenic
AATCAAGGTCATTAATATGA+TGG 0.442805 6_4:+40195320 None:intergenic
AGATGTGGGTGAAACGAAAA+GGG 0.448409 6_4:+40196571 None:intergenic
GAATTCCCAGATGCAAAATC+AGG 0.451087 6_4:-40195139 Msa0988010:intron
AATAATAATCTATGTGGCAG+GGG 0.451199 6_4:+40194420 None:intergenic
ATCAAGGTCATTAATATGAT+GGG 0.451219 6_4:+40195321 None:intergenic
CGCTTCCGGATGGCTGGGAG+AGG 0.452905 6_4:-40194612 Msa0988010:exon
GCTGGGAGAGGTTCATTAGC+AGG 0.457648 6_4:-40194600 Msa0988010:CDS
ATAGGAGCTGGTGCTGGGAC+CGG 0.461371 6_4:-40194696 Msa0988010:five_prime_UTR
AATTTAGACGGGTTAAAGCT+TGG 0.467638 6_4:-40194384 Msa0988010:CDS
TTCAAACTTGGCAGATATCC+CGG 0.468179 6_4:+40194677 None:intergenic
TGAATCGAACGGCGAAGGTA+GGG 0.470438 6_4:+40196456 None:intergenic
CAAAATTTACCTCAATTTGT+GGG 0.472408 6_4:+40196719 None:intergenic
AAGATGTGGGTGAAACGAAA+AGG 0.473798 6_4:+40196570 None:intergenic
GCATACCGGCAAAACTTCAT+TGG 0.475874 6_4:+40194533 None:intergenic
GCTTTCGAATCAAAGATGTC+AGG 0.488698 6_4:+40196188 None:intergenic
ACGGGTTAAAGCTTGGATAG+TGG 0.490097 6_4:-40194377 Msa0988010:exon
GAATCGAACGGCGAAGGTAG+GGG 0.495255 6_4:+40196457 None:intergenic
ACCGATTTAGCTTTGCATAG+AGG 0.497281 6_4:+40196369 None:intergenic
TTTGCATCTGGGAATTCGCT+AGG 0.503050 6_4:+40195145 None:intergenic
CTGAATCGAACGGCGAAGGT+AGG 0.503930 6_4:+40196455 None:intergenic
CAGGGCGCTTCCGGATGGCT+GGG 0.503971 6_4:-40194617 Msa0988010:exon
CTATAATAGGAGCTGGTGCT+GGG 0.507329 6_4:-40194701 Msa0988010:five_prime_UTR
ATGAACCTCTCCCAGCCATC+CGG 0.512584 6_4:+40194607 None:intergenic
TCTGCCAAGTTTGAAGAAGC+TGG 0.514940 6_4:-40194669 Msa0988010:five_prime_UTR
ACAACATTAGCATCAACAAA+TGG 0.515296 6_4:+40194570 None:intergenic
CTTTGCATAGAGGCGATTGA+AGG 0.517608 6_4:+40196379 None:intergenic
AGACATGGTTATTGATACTT+CGG 0.517933 6_4:-40196000 Msa0988010:five_prime_UTR
TAGGAGCTGGTGCTGGGACC+GGG 0.518792 6_4:-40194695 Msa0988010:five_prime_UTR
AAATAATAATCTATGTGGCA+GGG 0.519855 6_4:+40194419 None:intergenic
TTGAGATTTGAAGGATTTGG+TGG 0.525142 6_4:-40196041 Msa0988010:five_prime_UTR
ACAGTTTCAGGAATGGCTGC+TGG 0.535286 6_4:+40195229 None:intergenic
AGATCTGAATCGAACGGCGA+AGG 0.540821 6_4:+40196451 None:intergenic
CAACTCAGGGCGCTTCCGGA+TGG 0.544432 6_4:-40194622 Msa0988010:exon
GGAATTCCTATAATAGGAGC+TGG 0.549875 6_4:-40194708 Msa0988010:five_prime_UTR
CTAGTGTGTTCGCAAAATCA+AGG 0.551676 6_4:+40195305 None:intergenic
TGCGGCGACAAAGATCTCAT+AGG 0.570778 6_4:+40196415 None:intergenic
CTATCAAATAATAATCTATG+TGG 0.576162 6_4:+40194414 None:intergenic
CTGGGAGAGGTTCATTAGCA+GGG 0.582821 6_4:-40194599 Msa0988010:CDS
CTTTCGAATCAAAGATGTCA+GGG 0.595998 6_4:+40196189 None:intergenic
ATGTCAGGGAGAGATACAGC+TGG 0.606990 6_4:+40196203 None:intergenic
TAATGTTGTTGTGCTTGACA+TGG 0.611387 6_4:-40194556 Msa0988010:CDS
GATGTGGGTGAAACGAAAAG+GGG 0.613592 6_4:+40196572 None:intergenic
TCAAGGTCATTAATATGATG+GGG 0.639017 6_4:+40195322 None:intergenic
ATGTGGGTGAAACGAAAAGG+GGG 0.645263 6_4:+40196573 None:intergenic
AATCTTGGGAATTTCAGACA+TGG 0.646423 6_4:-40196015 Msa0988010:five_prime_UTR
GAAGGAAGCTTTGTGAAGTG+CGG 0.647538 6_4:+40196397 None:intergenic
ATAATAATCTATGTGGCAGG+GGG 0.656071 6_4:+40194421 None:intergenic
TTCGCTAGGTGCATAGACAA+TGG 0.657056 6_4:+40195159 None:intergenic
GCCAAGTTTGAAGAAGCTGG+AGG 0.688470 6_4:-40194666 Msa0988010:five_prime_UTR
GGCGACAAAGATCTCATAGG+TGG 0.696470 6_4:+40196418 None:intergenic
GATGTGAGATCTGAATCGAA+CGG 0.715542 6_4:+40196445 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAAATTTTAATTAAACTCA+AGG - chr6_4:40194455-40194474 Msa0988010:CDS 10.0%
!!! AAAATTTTAATTAAACTCAA+GGG - chr6_4:40194456-40194475 Msa0988010:CDS 10.0%
!! ATCTTAAACAAAATAAAATT+AGG - chr6_4:40194579-40194598 Msa0988010:CDS 10.0%
!!! TAGTTCTTATTTTAAAAATA+TGG - chr6_4:40195596-40195615 Msa0988010:intron 10.0%
!!! AAAAATTTTAATTAAACTCA+AGG - chr6_4:40194455-40194474 Msa0988010:CDS 10.0%
!!! AAAATTTTAATTAAACTCAA+GGG - chr6_4:40194456-40194475 Msa0988010:CDS 10.0%
!! ATCTTAAACAAAATAAAATT+AGG - chr6_4:40194579-40194598 Msa0988010:CDS 10.0%
!!! TAGTTCTTATTTTAAAAATA+TGG - chr6_4:40195596-40195615 Msa0988010:intron 10.0%
!!! AAATTTTAATTAAACTCAAG+GGG - chr6_4:40194457-40194476 Msa0988010:CDS 15.0%
!!! TTTTATTTTGTTTAAGATGT+GGG + chr6_4:40194577-40194596 None:intergenic 15.0%
!!! ATTTTATTTTGTTTAAGATG+TGG + chr6_4:40194578-40194597 None:intergenic 15.0%
!! AAAATAATTCTATCAAAGAA+AGG + chr6_4:40195173-40195192 None:intergenic 15.0%
!!! AATCAATTTTTTCTAAAATC+AGG + chr6_4:40195259-40195278 None:intergenic 15.0%
!!! TTGAATTTGGAATAAATAAT+TGG - chr6_4:40196299-40196318 Msa0988010:intron 15.0%
!!! GCATTTGTTATTAAATATTT+TGG + chr6_4:40196684-40196703 None:intergenic 15.0%
!!! AGATTATTATTTGATAGTTT+TGG - chr6_4:40196723-40196742 Msa0988010:five_prime_UTR 15.0%
!!! AAATTTTAATTAAACTCAAG+GGG - chr6_4:40194457-40194476 Msa0988010:CDS 15.0%
!!! TTTTATTTTGTTTAAGATGT+GGG + chr6_4:40194577-40194596 None:intergenic 15.0%
!!! ATTTTATTTTGTTTAAGATG+TGG + chr6_4:40194578-40194597 None:intergenic 15.0%
!! AAAATAATTCTATCAAAGAA+AGG + chr6_4:40195173-40195192 None:intergenic 15.0%
!!! AATCAATTTTTTCTAAAATC+AGG + chr6_4:40195259-40195278 None:intergenic 15.0%
!!! TTGAATTTGGAATAAATAAT+TGG - chr6_4:40196299-40196318 Msa0988010:intron 15.0%
!!! GCATTTGTTATTAAATATTT+TGG + chr6_4:40196684-40196703 None:intergenic 15.0%
!!! AGATTATTATTTGATAGTTT+TGG - chr6_4:40196723-40196742 Msa0988010:five_prime_UTR 15.0%
!!! ACTTCATTTTCTTCATTATA+AGG - chr6_4:40194823-40194842 Msa0988010:intron 20.0%
!! AATGAATTCAAAATATTTCC+AGG - chr6_4:40194973-40194992 Msa0988010:intron 20.0%
!! TGATTTATGCAATTCAAATT+AGG - chr6_4:40195274-40195293 Msa0988010:five_prime_UTR 20.0%
!!! TTTTTAGTTGAACATGTTTA+TGG - chr6_4:40195514-40195533 Msa0988010:intron 20.0%
!!! TCAAAATACTTTTGTTCTTT+TGG + chr6_4:40195638-40195657 None:intergenic 20.0%
!!! TTCTAAGATTTTAGTTTACT+TGG - chr6_4:40195730-40195749 Msa0988010:intron 20.0%
!! GAATATGCATATTATTTGAA+AGG + chr6_4:40196119-40196138 None:intergenic 20.0%
!! ATTTCATGGAAAAATTAACA+CGG + chr6_4:40196204-40196223 None:intergenic 20.0%
!! TTTAAAGATCAGATAGATAA+AGG - chr6_4:40196402-40196421 Msa0988010:five_prime_UTR 20.0%
!! GAAAAAGAAAGAAAGAAAAA+AGG + chr6_4:40196623-40196642 None:intergenic 20.0%
!! CTATCAAATAATAATCTATG+TGG + chr6_4:40196720-40196739 None:intergenic 20.0%
!!! ACTTCATTTTCTTCATTATA+AGG - chr6_4:40194823-40194842 Msa0988010:intron 20.0%
!! AATGAATTCAAAATATTTCC+AGG - chr6_4:40194973-40194992 Msa0988010:intron 20.0%
!! TGATTTATGCAATTCAAATT+AGG - chr6_4:40195274-40195293 Msa0988010:five_prime_UTR 20.0%
!!! TTTTTAGTTGAACATGTTTA+TGG - chr6_4:40195514-40195533 Msa0988010:intron 20.0%
!!! TCAAAATACTTTTGTTCTTT+TGG + chr6_4:40195638-40195657 None:intergenic 20.0%
!!! TTCTAAGATTTTAGTTTACT+TGG - chr6_4:40195730-40195749 Msa0988010:intron 20.0%
!! GAATATGCATATTATTTGAA+AGG + chr6_4:40196119-40196138 None:intergenic 20.0%
!! ATTTCATGGAAAAATTAACA+CGG + chr6_4:40196204-40196223 None:intergenic 20.0%
!! TTTAAAGATCAGATAGATAA+AGG - chr6_4:40196402-40196421 Msa0988010:five_prime_UTR 20.0%
!! GAAAAAGAAAGAAAGAAAAA+AGG + chr6_4:40196623-40196642 None:intergenic 20.0%
!! CTATCAAATAATAATCTATG+TGG + chr6_4:40196720-40196739 None:intergenic 20.0%
! CAAAATTTACCTCAATTTGT+GGG + chr6_4:40194415-40194434 None:intergenic 25.0%
!!! TAAATTTTGGTATTTGTGAG+CGG - chr6_4:40194426-40194445 Msa0988010:CDS 25.0%
!! TTTCACCAATCTTGAATTTT+AGG + chr6_4:40194798-40194817 None:intergenic 25.0%
! AATGAACGAAATATGATCTA+GGG + chr6_4:40194875-40194894 None:intergenic 25.0%
! AAATGAACGAAATATGATCT+AGG + chr6_4:40194876-40194895 None:intergenic 25.0%
!! TATTGAATGTCTTTTCCTAA+TGG - chr6_4:40195207-40195226 Msa0988010:five_prime_UTR 25.0%
!! ATTGAATGTCTTTTCCTAAT+GGG - chr6_4:40195208-40195227 Msa0988010:five_prime_UTR 25.0%
! TGAATTAAATCTTGAGCAAT+TGG - chr6_4:40195429-40195448 Msa0988010:intron 25.0%
!! AATACTTTTGTTCTTTTGGT+TGG + chr6_4:40195634-40195653 None:intergenic 25.0%
!!! ATTTTAGTTTACTTGGTTCT+AGG - chr6_4:40195737-40195756 Msa0988010:intron 25.0%
! ATCAAGGTCATTAATATGAT+GGG + chr6_4:40195813-40195832 None:intergenic 25.0%
! AATCAAGGTCATTAATATGA+TGG + chr6_4:40195814-40195833 None:intergenic 25.0%
!! GTAGAATCTTTAACAGTTTT+CGG + chr6_4:40195875-40195894 None:intergenic 25.0%
! TTTCGAAAAAATCAAGCTTT+GGG - chr6_4:40195948-40195967 Msa0988010:intron 25.0%
! GTTGTAGATGTGAATAAATT+TGG - chr6_4:40196076-40196095 Msa0988010:intron 25.0%
! AATAAATTTGGACTTTCTAG+TGG - chr6_4:40196088-40196107 Msa0988010:intron 25.0%
!! TGCATATTCTTTTACAACAA+TGG - chr6_4:40196130-40196149 Msa0988010:intron 25.0%
! AAACAATTCTTCAATGCAAA+CGG + chr6_4:40196159-40196178 None:intergenic 25.0%
! AAAAATTAACACGGATAATG+TGG + chr6_4:40196195-40196214 None:intergenic 25.0%
! TTAACACAAAAAGAAGCTAT+TGG + chr6_4:40196272-40196291 None:intergenic 25.0%
! TGTTAAACTTCTGTTGAATT+TGG - chr6_4:40196286-40196305 Msa0988010:intron 25.0%
!! AGTACTGTTTTCATTTCTAT+TGG - chr6_4:40196341-40196360 Msa0988010:intron 25.0%
! GATAAAGGAATTCCTATAAT+AGG - chr6_4:40196417-40196436 Msa0988010:five_prime_UTR 25.0%
!!! TTAATAGTTTTGTACAACTC+AGG - chr6_4:40196495-40196514 Msa0988010:five_prime_UTR 25.0%
!!! TAATAGTTTTGTACAACTCA+GGG - chr6_4:40196496-40196515 Msa0988010:five_prime_UTR 25.0%
! AAATAATAATCTATGTGGCA+GGG + chr6_4:40196715-40196734 None:intergenic 25.0%
!!! GATAGTTTTGGTAATTTAGA+CGG - chr6_4:40196735-40196754 Msa0988010:five_prime_UTR 25.0%
!!! ATAGTTTTGGTAATTTAGAC+GGG - chr6_4:40196736-40196755 Msa0988010:five_prime_UTR 25.0%
! CAAAATTTACCTCAATTTGT+GGG + chr6_4:40194415-40194434 None:intergenic 25.0%
!!! TAAATTTTGGTATTTGTGAG+CGG - chr6_4:40194426-40194445 Msa0988010:CDS 25.0%
!! TTTCACCAATCTTGAATTTT+AGG + chr6_4:40194798-40194817 None:intergenic 25.0%
! AATGAACGAAATATGATCTA+GGG + chr6_4:40194875-40194894 None:intergenic 25.0%
! AAATGAACGAAATATGATCT+AGG + chr6_4:40194876-40194895 None:intergenic 25.0%
!! TATTGAATGTCTTTTCCTAA+TGG - chr6_4:40195207-40195226 Msa0988010:five_prime_UTR 25.0%
!! ATTGAATGTCTTTTCCTAAT+GGG - chr6_4:40195208-40195227 Msa0988010:five_prime_UTR 25.0%
! TGAATTAAATCTTGAGCAAT+TGG - chr6_4:40195429-40195448 Msa0988010:intron 25.0%
!! AATACTTTTGTTCTTTTGGT+TGG + chr6_4:40195634-40195653 None:intergenic 25.0%
!!! ATTTTAGTTTACTTGGTTCT+AGG - chr6_4:40195737-40195756 Msa0988010:intron 25.0%
! ATCAAGGTCATTAATATGAT+GGG + chr6_4:40195813-40195832 None:intergenic 25.0%
! AATCAAGGTCATTAATATGA+TGG + chr6_4:40195814-40195833 None:intergenic 25.0%
!! GTAGAATCTTTAACAGTTTT+CGG + chr6_4:40195875-40195894 None:intergenic 25.0%
! TTTCGAAAAAATCAAGCTTT+GGG - chr6_4:40195948-40195967 Msa0988010:intron 25.0%
! GTTGTAGATGTGAATAAATT+TGG - chr6_4:40196076-40196095 Msa0988010:intron 25.0%
! AATAAATTTGGACTTTCTAG+TGG - chr6_4:40196088-40196107 Msa0988010:intron 25.0%
!! TGCATATTCTTTTACAACAA+TGG - chr6_4:40196130-40196149 Msa0988010:intron 25.0%
! AAACAATTCTTCAATGCAAA+CGG + chr6_4:40196159-40196178 None:intergenic 25.0%
! AAAAATTAACACGGATAATG+TGG + chr6_4:40196195-40196214 None:intergenic 25.0%
! TTAACACAAAAAGAAGCTAT+TGG + chr6_4:40196272-40196291 None:intergenic 25.0%
! TGTTAAACTTCTGTTGAATT+TGG - chr6_4:40196286-40196305 Msa0988010:intron 25.0%
!! AGTACTGTTTTCATTTCTAT+TGG - chr6_4:40196341-40196360 Msa0988010:intron 25.0%
! GATAAAGGAATTCCTATAAT+AGG - chr6_4:40196417-40196436 Msa0988010:five_prime_UTR 25.0%
!!! TTAATAGTTTTGTACAACTC+AGG - chr6_4:40196495-40196514 Msa0988010:five_prime_UTR 25.0%
!!! TAATAGTTTTGTACAACTCA+GGG - chr6_4:40196496-40196515 Msa0988010:five_prime_UTR 25.0%
! AAATAATAATCTATGTGGCA+GGG + chr6_4:40196715-40196734 None:intergenic 25.0%
!!! GATAGTTTTGGTAATTTAGA+CGG - chr6_4:40196735-40196754 Msa0988010:five_prime_UTR 25.0%
!!! ATAGTTTTGGTAATTTAGAC+GGG - chr6_4:40196736-40196755 Msa0988010:five_prime_UTR 25.0%
CCAAAATTTACCTCAATTTG+TGG + chr6_4:40194416-40194435 None:intergenic 30.0%
! CCACAAATTGAGGTAAATTT+TGG - chr6_4:40194413-40194432 Msa0988010:CDS 30.0%
! ACTCAATTTTGTACAACTGT+GGG + chr6_4:40194516-40194535 None:intergenic 30.0%
! ATGATGATGATGATGATGAT+AGG + chr6_4:40194639-40194658 None:intergenic 30.0%
TCGAACCTAAAATTCAAGAT+TGG - chr6_4:40194790-40194809 Msa0988010:intron 30.0%
TGAAACAAAAACAACAACAG+AGG + chr6_4:40194905-40194924 None:intergenic 30.0%
GCATAAAGATTAGTAAAACC+TGG + chr6_4:40194994-40195013 None:intergenic 30.0%
!!! TAGTAGGTTTTGAGATTTGA+AGG - chr6_4:40195081-40195100 Msa0988010:intron 30.0%
!!! GTTTTGAGATTTGAAGGATT+TGG - chr6_4:40195087-40195106 Msa0988010:intron 30.0%
AGACATGGTTATTGATACTT+CGG - chr6_4:40195131-40195150 Msa0988010:intron 30.0%
ATCAAAAATCACTCTCAACA+TGG + chr6_4:40195356-40195375 None:intergenic 30.0%
!!! GTGCTTATTTGATTTGCTTT+TGG - chr6_4:40195462-40195481 Msa0988010:intron 30.0%
TGTAAACTTCATTGTACTCT+TGG - chr6_4:40195555-40195574 Msa0988010:intron 30.0%
GTAAACTTCATTGTACTCTT+GGG - chr6_4:40195556-40195575 Msa0988010:intron 30.0%
TCAAGGTCATTAATATGATG+GGG + chr6_4:40195812-40195831 None:intergenic 30.0%
! ACTAGTTGATGCATATTTAG+AGG - chr6_4:40195844-40195863 Msa0988010:intron 30.0%
GTTTCGAAAAAATCAAGCTT+TGG - chr6_4:40195947-40195966 Msa0988010:intron 30.0%
ATGCATATTATTTGAAAGGC+TGG + chr6_4:40196115-40196134 None:intergenic 30.0%
CATGAAATTTAGTTAGTGCT+GGG - chr6_4:40196216-40196235 Msa0988010:five_prime_UTR 30.0%
ATTTCTATTGGCAGAAACTT+TGG - chr6_4:40196353-40196372 Msa0988010:intron 30.0%
ACAACATTAGCATCAACAAA+TGG + chr6_4:40196564-40196583 None:intergenic 30.0%
! AAGAAAGAAAAAAGGCATAC+CGG + chr6_4:40196615-40196634 None:intergenic 30.0%
AATAATAATCTATGTGGCAG+GGG + chr6_4:40196714-40196733 None:intergenic 30.0%
CAAATAATAATCTATGTGGC+AGG + chr6_4:40196716-40196735 None:intergenic 30.0%
CCAAAATTTACCTCAATTTG+TGG + chr6_4:40194416-40194435 None:intergenic 30.0%
! CCACAAATTGAGGTAAATTT+TGG - chr6_4:40194413-40194432 Msa0988010:CDS 30.0%
! ACTCAATTTTGTACAACTGT+GGG + chr6_4:40194516-40194535 None:intergenic 30.0%
! ATGATGATGATGATGATGAT+AGG + chr6_4:40194639-40194658 None:intergenic 30.0%
TCGAACCTAAAATTCAAGAT+TGG - chr6_4:40194790-40194809 Msa0988010:intron 30.0%
TGAAACAAAAACAACAACAG+AGG + chr6_4:40194905-40194924 None:intergenic 30.0%
GCATAAAGATTAGTAAAACC+TGG + chr6_4:40194994-40195013 None:intergenic 30.0%
!!! TAGTAGGTTTTGAGATTTGA+AGG - chr6_4:40195081-40195100 Msa0988010:intron 30.0%
!!! GTTTTGAGATTTGAAGGATT+TGG - chr6_4:40195087-40195106 Msa0988010:intron 30.0%
AGACATGGTTATTGATACTT+CGG - chr6_4:40195131-40195150 Msa0988010:intron 30.0%
ATCAAAAATCACTCTCAACA+TGG + chr6_4:40195356-40195375 None:intergenic 30.0%
!!! GTGCTTATTTGATTTGCTTT+TGG - chr6_4:40195462-40195481 Msa0988010:intron 30.0%
TGTAAACTTCATTGTACTCT+TGG - chr6_4:40195555-40195574 Msa0988010:intron 30.0%
GTAAACTTCATTGTACTCTT+GGG - chr6_4:40195556-40195575 Msa0988010:intron 30.0%
TCAAGGTCATTAATATGATG+GGG + chr6_4:40195812-40195831 None:intergenic 30.0%
! ACTAGTTGATGCATATTTAG+AGG - chr6_4:40195844-40195863 Msa0988010:intron 30.0%
GTTTCGAAAAAATCAAGCTT+TGG - chr6_4:40195947-40195966 Msa0988010:intron 30.0%
ATGCATATTATTTGAAAGGC+TGG + chr6_4:40196115-40196134 None:intergenic 30.0%
CATGAAATTTAGTTAGTGCT+GGG - chr6_4:40196216-40196235 Msa0988010:five_prime_UTR 30.0%
ATTTCTATTGGCAGAAACTT+TGG - chr6_4:40196353-40196372 Msa0988010:intron 30.0%
ACAACATTAGCATCAACAAA+TGG + chr6_4:40196564-40196583 None:intergenic 30.0%
! AAGAAAGAAAAAAGGCATAC+CGG + chr6_4:40196615-40196634 None:intergenic 30.0%
AATAATAATCTATGTGGCAG+GGG + chr6_4:40196714-40196733 None:intergenic 30.0%
CAAATAATAATCTATGTGGC+AGG + chr6_4:40196716-40196735 None:intergenic 30.0%
!!! TTTTTTCACGCCAATTTACG+GGG + chr6_4:40194492-40194511 None:intergenic 35.0%
!!! GTTTTTTCACGCCAATTTAC+GGG + chr6_4:40194493-40194512 None:intergenic 35.0%
!!! GGTTTTTTCACGCCAATTTA+CGG + chr6_4:40194494-40194513 None:intergenic 35.0%
! CTCAATTTTGTACAACTGTG+GGG + chr6_4:40194515-40194534 None:intergenic 35.0%
! CACTCAATTTTGTACAACTG+TGG + chr6_4:40194517-40194536 None:intergenic 35.0%
CTTTCGAATCAAAGATGTCA+GGG + chr6_4:40194945-40194964 None:intergenic 35.0%
TGATCTGTTGCAGATTTAGT+AGG - chr6_4:40195065-40195084 Msa0988010:intron 35.0%
TTGAGATTTGAAGGATTTGG+TGG - chr6_4:40195090-40195109 Msa0988010:intron 35.0%
AATCTTGGGAATTTCAGACA+TGG - chr6_4:40195116-40195135 Msa0988010:intron 35.0%
TTGATACTTCGGATCACTAT+TGG - chr6_4:40195142-40195161 Msa0988010:five_prime_UTR 35.0%
! AAGTTGCTTTCTTTCCCATT+AGG + chr6_4:40195225-40195244 None:intergenic 35.0%
CAAATCAAATAAGCACTCAG+GGG + chr6_4:40195458-40195477 None:intergenic 35.0%
GCAAATCAAATAAGCACTCA+GGG + chr6_4:40195459-40195478 None:intergenic 35.0%
AGCAAATCAAATAAGCACTC+AGG + chr6_4:40195460-40195479 None:intergenic 35.0%
!! GTTCTAGGAAGAACTTCTTA+AGG - chr6_4:40195752-40195771 Msa0988010:intron 35.0%
! TCTAAAGTTGTGTATTGTGC+AGG - chr6_4:40195775-40195794 Msa0988010:intron 35.0%
! ATTTTGGACAGTTTCAGGAA+TGG + chr6_4:40195912-40195931 None:intergenic 35.0%
! TGAACATTTTGGACAGTTTC+AGG + chr6_4:40195917-40195936 None:intergenic 35.0%
! CAGAACACTCATGAACATTT+TGG + chr6_4:40195928-40195947 None:intergenic 35.0%
! GATAACCTGATTTTGCATCT+GGG + chr6_4:40196000-40196019 None:intergenic 35.0%
! TGATAACCTGATTTTGCATC+TGG + chr6_4:40196001-40196020 None:intergenic 35.0%
CCAGCACTAACTAAATTTCA+TGG + chr6_4:40196218-40196237 None:intergenic 35.0%
CCATGAAATTTAGTTAGTGC+TGG - chr6_4:40196215-40196234 Msa0988010:five_prime_UTR 35.0%
TAATGTTGTTGTGCTTGACA+TGG - chr6_4:40196575-40196594 Msa0988010:five_prime_UTR 35.0%
ATAATAATCTATGTGGCAGG+GGG + chr6_4:40196713-40196732 None:intergenic 35.0%
!! AATTTAGACGGGTTAAAGCT+TGG - chr6_4:40196747-40196766 Msa0988010:five_prime_UTR 35.0%
!!! TTTTTTCACGCCAATTTACG+GGG + chr6_4:40194492-40194511 None:intergenic 35.0%
!!! GTTTTTTCACGCCAATTTAC+GGG + chr6_4:40194493-40194512 None:intergenic 35.0%
!!! GGTTTTTTCACGCCAATTTA+CGG + chr6_4:40194494-40194513 None:intergenic 35.0%
! CTCAATTTTGTACAACTGTG+GGG + chr6_4:40194515-40194534 None:intergenic 35.0%
! CACTCAATTTTGTACAACTG+TGG + chr6_4:40194517-40194536 None:intergenic 35.0%
CTTTCGAATCAAAGATGTCA+GGG + chr6_4:40194945-40194964 None:intergenic 35.0%
TGATCTGTTGCAGATTTAGT+AGG - chr6_4:40195065-40195084 Msa0988010:intron 35.0%
TTGAGATTTGAAGGATTTGG+TGG - chr6_4:40195090-40195109 Msa0988010:intron 35.0%
AATCTTGGGAATTTCAGACA+TGG - chr6_4:40195116-40195135 Msa0988010:intron 35.0%
TTGATACTTCGGATCACTAT+TGG - chr6_4:40195142-40195161 Msa0988010:five_prime_UTR 35.0%
! AAGTTGCTTTCTTTCCCATT+AGG + chr6_4:40195225-40195244 None:intergenic 35.0%
CAAATCAAATAAGCACTCAG+GGG + chr6_4:40195458-40195477 None:intergenic 35.0%
GCAAATCAAATAAGCACTCA+GGG + chr6_4:40195459-40195478 None:intergenic 35.0%
AGCAAATCAAATAAGCACTC+AGG + chr6_4:40195460-40195479 None:intergenic 35.0%
!! GTTCTAGGAAGAACTTCTTA+AGG - chr6_4:40195752-40195771 Msa0988010:intron 35.0%
! TCTAAAGTTGTGTATTGTGC+AGG - chr6_4:40195775-40195794 Msa0988010:intron 35.0%
! ATTTTGGACAGTTTCAGGAA+TGG + chr6_4:40195912-40195931 None:intergenic 35.0%
! TGAACATTTTGGACAGTTTC+AGG + chr6_4:40195917-40195936 None:intergenic 35.0%
! CAGAACACTCATGAACATTT+TGG + chr6_4:40195928-40195947 None:intergenic 35.0%
! GATAACCTGATTTTGCATCT+GGG + chr6_4:40196000-40196019 None:intergenic 35.0%
! TGATAACCTGATTTTGCATC+TGG + chr6_4:40196001-40196020 None:intergenic 35.0%
CCAGCACTAACTAAATTTCA+TGG + chr6_4:40196218-40196237 None:intergenic 35.0%
CCATGAAATTTAGTTAGTGC+TGG - chr6_4:40196215-40196234 Msa0988010:five_prime_UTR 35.0%
TAATGTTGTTGTGCTTGACA+TGG - chr6_4:40196575-40196594 Msa0988010:five_prime_UTR 35.0%
ATAATAATCTATGTGGCAGG+GGG + chr6_4:40196713-40196732 None:intergenic 35.0%
!! AATTTAGACGGGTTAAAGCT+TGG - chr6_4:40196747-40196766 Msa0988010:five_prime_UTR 35.0%
!! ACAAAAAATGCGCTGGTTTG+TGG - chr6_4:40194360-40194379 Msa0988010:three_prime_UTR 40.0%
!! CAAAAAATGCGCTGGTTTGT+GGG - chr6_4:40194361-40194380 Msa0988010:exon 40.0%
!!! GGTTTGTGGGAGTTTTTTAG+TGG - chr6_4:40194374-40194393 Msa0988010:exon 40.0%
!!! TTGTGGGAGTTTTTTAGTGG+AGG - chr6_4:40194377-40194396 Msa0988010:exon 40.0%
ATCGAAACTCCCACAAATTG+AGG - chr6_4:40194403-40194422 Msa0988010:CDS 40.0%
!! GTTCTAAAACCCCCGTAAAT+TGG - chr6_4:40194479-40194498 Msa0988010:CDS 40.0%
! TTTTTCACGCCAATTTACGG+GGG + chr6_4:40194491-40194510 None:intergenic 40.0%
AGATGTGGGTGAAACGAAAA+GGG + chr6_4:40194563-40194582 None:intergenic 40.0%
AAGATGTGGGTGAAACGAAA+AGG + chr6_4:40194564-40194583 None:intergenic 40.0%
GATGTGAGATCTGAATCGAA+CGG + chr6_4:40194689-40194708 None:intergenic 40.0%
CAAAGATCTCATAGGTGGTT+AGG + chr6_4:40194711-40194730 None:intergenic 40.0%
GCCTCTATGCAAAGCTAAAT+CGG - chr6_4:40194761-40194780 Msa0988010:five_prime_UTR 40.0%
!! ACCGATTTAGCTTTGCATAG+AGG + chr6_4:40194765-40194784 None:intergenic 40.0%
GCTTTCGAATCAAAGATGTC+AGG + chr6_4:40194946-40194965 None:intergenic 40.0%
!! AGGATTTGGTGGAAGAATCT+TGG - chr6_4:40195101-40195120 Msa0988010:intron 40.0%
!! GGATTTGGTGGAAGAATCTT+GGG - chr6_4:40195102-40195121 Msa0988010:intron 40.0%
GTTGAACATGTTTATGGCTG+TGG - chr6_4:40195520-40195539 Msa0988010:intron 40.0%
CTAGTGTGTTCGCAAAATCA+AGG + chr6_4:40195829-40195848 None:intergenic 40.0%
GAATTCCCAGATGCAAAATC+AGG - chr6_4:40195992-40196011 Msa0988010:five_prime_UTR 40.0%
GGAATTCCTATAATAGGAGC+TGG - chr6_4:40196423-40196442 Msa0988010:five_prime_UTR 40.0%
TTCAAACTTGGCAGATATCC+CGG + chr6_4:40196457-40196476 None:intergenic 40.0%
!! ACAAAAAATGCGCTGGTTTG+TGG - chr6_4:40194360-40194379 Msa0988010:three_prime_UTR 40.0%
!! CAAAAAATGCGCTGGTTTGT+GGG - chr6_4:40194361-40194380 Msa0988010:exon 40.0%
!!! GGTTTGTGGGAGTTTTTTAG+TGG - chr6_4:40194374-40194393 Msa0988010:exon 40.0%
!!! TTGTGGGAGTTTTTTAGTGG+AGG - chr6_4:40194377-40194396 Msa0988010:exon 40.0%
ATCGAAACTCCCACAAATTG+AGG - chr6_4:40194403-40194422 Msa0988010:CDS 40.0%
!! GTTCTAAAACCCCCGTAAAT+TGG - chr6_4:40194479-40194498 Msa0988010:CDS 40.0%
! TTTTTCACGCCAATTTACGG+GGG + chr6_4:40194491-40194510 None:intergenic 40.0%
AGATGTGGGTGAAACGAAAA+GGG + chr6_4:40194563-40194582 None:intergenic 40.0%
AAGATGTGGGTGAAACGAAA+AGG + chr6_4:40194564-40194583 None:intergenic 40.0%
GATGTGAGATCTGAATCGAA+CGG + chr6_4:40194689-40194708 None:intergenic 40.0%
CAAAGATCTCATAGGTGGTT+AGG + chr6_4:40194711-40194730 None:intergenic 40.0%
GCCTCTATGCAAAGCTAAAT+CGG - chr6_4:40194761-40194780 Msa0988010:five_prime_UTR 40.0%
!! ACCGATTTAGCTTTGCATAG+AGG + chr6_4:40194765-40194784 None:intergenic 40.0%
GCTTTCGAATCAAAGATGTC+AGG + chr6_4:40194946-40194965 None:intergenic 40.0%
!! AGGATTTGGTGGAAGAATCT+TGG - chr6_4:40195101-40195120 Msa0988010:intron 40.0%
!! GGATTTGGTGGAAGAATCTT+GGG - chr6_4:40195102-40195121 Msa0988010:intron 40.0%
GTTGAACATGTTTATGGCTG+TGG - chr6_4:40195520-40195539 Msa0988010:intron 40.0%
CTAGTGTGTTCGCAAAATCA+AGG + chr6_4:40195829-40195848 None:intergenic 40.0%
GAATTCCCAGATGCAAAATC+AGG - chr6_4:40195992-40196011 Msa0988010:five_prime_UTR 40.0%
GGAATTCCTATAATAGGAGC+TGG - chr6_4:40196423-40196442 Msa0988010:five_prime_UTR 40.0%
TTCAAACTTGGCAGATATCC+CGG + chr6_4:40196457-40196476 None:intergenic 40.0%
ATGTGGGTGAAACGAAAAGG+GGG + chr6_4:40194561-40194580 None:intergenic 45.0%
GATGTGGGTGAAACGAAAAG+GGG + chr6_4:40194562-40194581 None:intergenic 45.0%
TTAGGTCTCTCTCTCTCACA+TGG - chr6_4:40194597-40194616 Msa0988010:CDS 45.0%
! GCGAAGGTAGGGGATTATTT+TGG + chr6_4:40194667-40194686 None:intergenic 45.0%
! GAAGGAAGCTTTGTGAAGTG+CGG + chr6_4:40194737-40194756 None:intergenic 45.0%
CTTTGCATAGAGGCGATTGA+AGG + chr6_4:40194755-40194774 None:intergenic 45.0%
GTTGTGTATTGTGCAGGTGA+AGG - chr6_4:40195781-40195800 Msa0988010:intron 45.0%
TTCGCTAGGTGCATAGACAA+TGG + chr6_4:40195975-40195994 None:intergenic 45.0%
TTTGCATCTGGGAATTCGCT+AGG + chr6_4:40195989-40196008 None:intergenic 45.0%
CTATAATAGGAGCTGGTGCT+GGG - chr6_4:40196430-40196449 Msa0988010:five_prime_UTR 45.0%
TCTGCCAAGTTTGAAGAAGC+TGG - chr6_4:40196462-40196481 Msa0988010:five_prime_UTR 45.0%
TCCTCCAGCTTCTTCAAACT+TGG + chr6_4:40196469-40196488 None:intergenic 45.0%
! CATGGCCAATGAAGTTTTGC+CGG - chr6_4:40196593-40196612 Msa0988010:five_prime_UTR 45.0%
GCATACCGGCAAAACTTCAT+TGG + chr6_4:40196601-40196620 None:intergenic 45.0%
! ACGGGTTAAAGCTTGGATAG+TGG - chr6_4:40196754-40196773 Msa0988010:five_prime_UTR 45.0%
ATGTGGGTGAAACGAAAAGG+GGG + chr6_4:40194561-40194580 None:intergenic 45.0%
GATGTGGGTGAAACGAAAAG+GGG + chr6_4:40194562-40194581 None:intergenic 45.0%
TTAGGTCTCTCTCTCTCACA+TGG - chr6_4:40194597-40194616 Msa0988010:CDS 45.0%
! GCGAAGGTAGGGGATTATTT+TGG + chr6_4:40194667-40194686 None:intergenic 45.0%
! GAAGGAAGCTTTGTGAAGTG+CGG + chr6_4:40194737-40194756 None:intergenic 45.0%
CTTTGCATAGAGGCGATTGA+AGG + chr6_4:40194755-40194774 None:intergenic 45.0%
GTTGTGTATTGTGCAGGTGA+AGG - chr6_4:40195781-40195800 Msa0988010:intron 45.0%
TTCGCTAGGTGCATAGACAA+TGG + chr6_4:40195975-40195994 None:intergenic 45.0%
TTTGCATCTGGGAATTCGCT+AGG + chr6_4:40195989-40196008 None:intergenic 45.0%
CTATAATAGGAGCTGGTGCT+GGG - chr6_4:40196430-40196449 Msa0988010:five_prime_UTR 45.0%
TCTGCCAAGTTTGAAGAAGC+TGG - chr6_4:40196462-40196481 Msa0988010:five_prime_UTR 45.0%
TCCTCCAGCTTCTTCAAACT+TGG + chr6_4:40196469-40196488 None:intergenic 45.0%
! CATGGCCAATGAAGTTTTGC+CGG - chr6_4:40196593-40196612 Msa0988010:five_prime_UTR 45.0%
GCATACCGGCAAAACTTCAT+TGG + chr6_4:40196601-40196620 None:intergenic 45.0%
! ACGGGTTAAAGCTTGGATAG+TGG - chr6_4:40196754-40196773 Msa0988010:five_prime_UTR 45.0%
TGAATCGAACGGCGAAGGTA+GGG + chr6_4:40194678-40194697 None:intergenic 50.0%
AGATCTGAATCGAACGGCGA+AGG + chr6_4:40194683-40194702 None:intergenic 50.0%
GGCGACAAAGATCTCATAGG+TGG + chr6_4:40194716-40194735 None:intergenic 50.0%
TGCGGCGACAAAGATCTCAT+AGG + chr6_4:40194719-40194738 None:intergenic 50.0%
ATGTCAGGGAGAGATACAGC+TGG + chr6_4:40194931-40194950 None:intergenic 50.0%
ACAGTTTCAGGAATGGCTGC+TGG + chr6_4:40195905-40195924 None:intergenic 50.0%
CCAGCACCAGCTCCTATTAT+AGG + chr6_4:40196432-40196451 None:intergenic 50.0%
CCTATAATAGGAGCTGGTGC+TGG - chr6_4:40196429-40196448 Msa0988010:five_prime_UTR 50.0%
GCCAAGTTTGAAGAAGCTGG+AGG - chr6_4:40196465-40196484 Msa0988010:five_prime_UTR 50.0%
CTGGGAGAGGTTCATTAGCA+GGG - chr6_4:40196532-40196551 Msa0988010:five_prime_UTR 50.0%
TGAATCGAACGGCGAAGGTA+GGG + chr6_4:40194678-40194697 None:intergenic 50.0%
AGATCTGAATCGAACGGCGA+AGG + chr6_4:40194683-40194702 None:intergenic 50.0%
GGCGACAAAGATCTCATAGG+TGG + chr6_4:40194716-40194735 None:intergenic 50.0%
TGCGGCGACAAAGATCTCAT+AGG + chr6_4:40194719-40194738 None:intergenic 50.0%
ATGTCAGGGAGAGATACAGC+TGG + chr6_4:40194931-40194950 None:intergenic 50.0%
ACAGTTTCAGGAATGGCTGC+TGG + chr6_4:40195905-40195924 None:intergenic 50.0%
CCAGCACCAGCTCCTATTAT+AGG + chr6_4:40196432-40196451 None:intergenic 50.0%
CCTATAATAGGAGCTGGTGC+TGG - chr6_4:40196429-40196448 Msa0988010:five_prime_UTR 50.0%
GCCAAGTTTGAAGAAGCTGG+AGG - chr6_4:40196465-40196484 Msa0988010:five_prime_UTR 50.0%
CTGGGAGAGGTTCATTAGCA+GGG - chr6_4:40196532-40196551 Msa0988010:five_prime_UTR 50.0%
GAATCGAACGGCGAAGGTAG+GGG + chr6_4:40194677-40194696 None:intergenic 55.0%
CTGAATCGAACGGCGAAGGT+AGG + chr6_4:40194679-40194698 None:intergenic 55.0%
! TGTACAACTCAGGGCGCTTC+CGG - chr6_4:40196505-40196524 Msa0988010:five_prime_UTR 55.0%
ATGAACCTCTCCCAGCCATC+CGG + chr6_4:40196527-40196546 None:intergenic 55.0%
GCTGGGAGAGGTTCATTAGC+AGG - chr6_4:40196531-40196550 Msa0988010:five_prime_UTR 55.0%
GAATCGAACGGCGAAGGTAG+GGG + chr6_4:40194677-40194696 None:intergenic 55.0%
CTGAATCGAACGGCGAAGGT+AGG + chr6_4:40194679-40194698 None:intergenic 55.0%
! TGTACAACTCAGGGCGCTTC+CGG - chr6_4:40196505-40196524 Msa0988010:five_prime_UTR 55.0%
ATGAACCTCTCCCAGCCATC+CGG + chr6_4:40196527-40196546 None:intergenic 55.0%
GCTGGGAGAGGTTCATTAGC+AGG - chr6_4:40196531-40196550 Msa0988010:five_prime_UTR 55.0%
! ATAGGAGCTGGTGCTGGGAC+CGG - chr6_4:40196435-40196454 Msa0988010:five_prime_UTR 60.0%
! ATAGGAGCTGGTGCTGGGAC+CGG - chr6_4:40196435-40196454 Msa0988010:five_prime_UTR 60.0%
! TAGGAGCTGGTGCTGGGACC+GGG - chr6_4:40196436-40196455 Msa0988010:five_prime_UTR 65.0%
! CAACTCAGGGCGCTTCCGGA+TGG - chr6_4:40196509-40196528 Msa0988010:five_prime_UTR 65.0%
! TAGGAGCTGGTGCTGGGACC+GGG - chr6_4:40196436-40196455 Msa0988010:five_prime_UTR 65.0%
! CAACTCAGGGCGCTTCCGGA+TGG - chr6_4:40196509-40196528 Msa0988010:five_prime_UTR 65.0%
! TCAGGGCGCTTCCGGATGGC+TGG - chr6_4:40196513-40196532 Msa0988010:five_prime_UTR 70.0%
! CAGGGCGCTTCCGGATGGCT+GGG - chr6_4:40196514-40196533 Msa0988010:five_prime_UTR 70.0%
CGCTTCCGGATGGCTGGGAG+AGG - chr6_4:40196519-40196538 Msa0988010:five_prime_UTR 70.0%
! TCAGGGCGCTTCCGGATGGC+TGG - chr6_4:40196513-40196532 Msa0988010:five_prime_UTR 70.0%
! CAGGGCGCTTCCGGATGGCT+GGG - chr6_4:40196514-40196533 Msa0988010:five_prime_UTR 70.0%
CGCTTCCGGATGGCTGGGAG+AGG - chr6_4:40196519-40196538 Msa0988010:five_prime_UTR 70.0%
Chromosome Type Strat End Strand Name
chr6_4 gene 40194355 40196798 40194355 ID=Msa0988010;Name=Msa0988010
chr6_4 mRNA 40194355 40196798 40194355 ID=Msa0988010-mRNA-1;Parent=Msa0988010;Name=Msa0988010-mRNA-1;_AED=0.00;_eAED=0.00;_QI=990|1|1|1|0.25|0.4|5|25|81
chr6_4 exon 40194355 40194786 40194355 ID=Msa0988010-mRNA-1:exon:9767;Parent=Msa0988010-mRNA-1
chr6_4 exon 40195140 40195356 40195140 ID=Msa0988010-mRNA-1:exon:9766;Parent=Msa0988010-mRNA-1
chr6_4 exon 40195990 40196075 40195990 ID=Msa0988010-mRNA-1:exon:9765;Parent=Msa0988010-mRNA-1
chr6_4 exon 40196159 40196247 40196159 ID=Msa0988010-mRNA-1:exon:9764;Parent=Msa0988010-mRNA-1
chr6_4 exon 40196362 40196798 40196362 ID=Msa0988010-mRNA-1:exon:9763;Parent=Msa0988010-mRNA-1
chr6_4 five_prime_UTR 40196362 40196798 40196362 ID=Msa0988010-mRNA-1:five_prime_utr;Parent=Msa0988010-mRNA-1
chr6_4 five_prime_UTR 40196159 40196247 40196159 ID=Msa0988010-mRNA-1:five_prime_utr;Parent=Msa0988010-mRNA-1
chr6_4 five_prime_UTR 40195990 40196075 40195990 ID=Msa0988010-mRNA-1:five_prime_utr;Parent=Msa0988010-mRNA-1
chr6_4 five_prime_UTR 40195140 40195356 40195140 ID=Msa0988010-mRNA-1:five_prime_utr;Parent=Msa0988010-mRNA-1
chr6_4 five_prime_UTR 40194626 40194786 40194626 ID=Msa0988010-mRNA-1:five_prime_utr;Parent=Msa0988010-mRNA-1
chr6_4 CDS 40194380 40194625 40194380 ID=Msa0988010-mRNA-1:cds;Parent=Msa0988010-mRNA-1
chr6_4 three_prime_UTR 40194355 40194379 40194355 ID=Msa0988010-mRNA-1:three_prime_utr;Parent=Msa0988010-mRNA-1
Gene Sequence

>Msa0988010

ATGGCTGGGAGAGGTTCATTAGCAGGGTTGTTGCCATTTGTTGATGCTAATGTTGTTGTGCTTGACATGGCCAATGAAGTTTTGCCGGTATGCCTTTTTTCTTTCTTTCTTTTTCTTTCTATGCAATTAGCATGCTTGTATGTAAATCTGAGTCCAAAATATTTAATAACAAATGCTCAATGCCCCCTGCCACATAGATTATTATTTGATAGTTTTGGTAATTTAGACGGGTTAAAGCTTGGATAG
Protein sequence

>Msa0988010

MAGRGSLAGLLPFVDANVVVLDMANEVLPVCLFSFFLFLSMQLACLYVNLSPKYLITNAQCPLPHRLLFDSFGNLDGLKLG*