AlfalfaGEDB | Msa1118730

M. sativa cultivar zhongmu-4 / Msa1118730

KEGG: K20222
GO: -
PFAM: PF03810.22

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1118730	XP_003624635.1	99.553	1118	5	0	74	1191	1	1118	0.0	2289

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1118730	sp\|O00410\|IPO5_HUMAN	36.250	1120	665	16	91	1191	7	1096	0.0	692

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1118730	A5XEM2	99.553	1118	5	0	74	1191	1	1118	0.0	2289

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa1031790	Msa1118730	0.869605	2.732646e-66	-8.615850e-47
Msa1118730	Msa1158700	0.918082	2.413907e-86	-8.615850e-47

Showing 1 to 2 of 2 entries

Previous1Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1118730	MtrunA17_Chr7g0253431	99.553	1118	5	0	74	1191	1	1118	0.0	2289
Msa1118730	MtrunA17_Chr8g0378791	79.784	1113	220	3	80	1191	9	1117	0.0	1760
Msa1118730	MtrunA17_Chr2g0277681	25.819	1069	698	25	92	1138	2	997	1.59e-87	306
Msa1118730	MtrunA17_Chr3g0110011	45.532	235	126	1	957	1191	110	342	2.10e-66	228
Msa1118730	MtrunA17_Chr3g0110081	25.123	816	516	21	111	908	103	841	1.24e-40	162
Msa1118730	MtrunA17_Chr3g0110041	26.273	609	397	22	92	663	77	670	2.86e-35	144
Msa1118730	MtrunA17_Chr3g0110021	28.392	398	256	12	110	489	48	434	5.24e-35	139
Msa1118730	MtrunA17_Chr3g0110051	25.340	588	396	17	98	662	64	631	2.27e-32	136
Msa1118730	MtrunA17_Chr3g0110061	26.071	560	386	15	124	667	63	610	8.98e-28	120
Msa1118730	MtrunA17_Chr8g0388701	35.503	169	88	5	993	1160	13	161	2.72e-22	95.5

Showing 1 to 10 of 12 entries

Previous1 2Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1118730	AT5G19820.1	74.373	1116	280	4	77	1191	6	1116	0.0	1714
Msa1118730	AT4G27640.1	24.748	1091	745	22	95	1168	5	1036	4.45e-82	291

Showing 1 to 2 of 2 entries

Previous1Next

Find 321 sgRNAs with CRISPR-Local

Find 719 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGAAGCGGAAGCAAGTC+AGG	0.444656	7_3:-67477680	None:intergenic
AAACAATTAGGATGATAGGA+TGG	0.605832	7_3:-67486809	None:intergenic
AAACCCTCGGGTGCGGTGGG+CGG	0.521210	7_3:+67479580	Msa1118730:CDS
AAAGCAAGTAAGGAGCATTG+TGG	0.670200	7_3:+67483668	Msa1118730:CDS
AAAGTGCAAACCTGTACTCG+AGG	0.643138	7_3:-67479713	None:intergenic
AAATAAGGTACTAAAATATC+TGG	0.209428	7_3:-67480458	None:intergenic
AACAACTTCTTTACAAACTG+CGG	0.559246	7_3:-67478993	None:intergenic
AACAGACACGCGTCTTCTGA+AGG	0.561349	7_3:-67486851	None:intergenic
AACATGCCTCATCCACATAC+AGG	0.546803	7_3:-67487174	None:intergenic
AACTTCTCATTGAGCTTGCT+GGG	0.371868	7_3:+67478805	Msa1118730:CDS

Showing 1 to 10 of 321 entries

Previous1 2 3 4 5…33Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
TTCAATTCAATTCACAACGA+TGG	+	chr7_3:67477232-67477251	Msa1118730:CDS	30.0%
ATAACCAGCAGTGAAAATTA+TGG	+	chr7_3:67477933-67477952	Msa1118730:intron	30.0%
AAATTGAACCATAACTCCTT+AGG	-	chr7_3:67478124-67478143	None:intergenic	30.0%
CTTATCATGATAGATGCTTA+AGG	-	chr7_3:67478376-67478395	None:intergenic	30.0%
AACTAAACACATACTCTAAG+AGG	-	chr7_3:67478553-67478572	None:intergenic	30.0%
TAGAGTATGTGTTTAGTTAG+AGG	+	chr7_3:67478555-67478574	Msa1118730:intron	30.0%
AGAGTATGTGTTTAGTTAGA+GGG	+	chr7_3:67478556-67478575	Msa1118730:intron	30.0%
AACAACTTCTTTACAAACTG+CGG	-	chr7_3:67478996-67479015	None:intergenic	30.0%
CAGTTTGTAAAGAAGTTGTT+TGG	+	chr7_3:67478996-67479015	Msa1118730:CDS	30.0%
AGATAGACTTTCAATTGCTT+TGG	+	chr7_3:67479133-67479152	Msa1118730:CDS	30.0%

Showing 1 to 10 of 719 entries

Previous1 2 3 4 5…72Next

Chromosome	Type	Strat	End	Strand	Name
chr7_3	gene	67477032	67487468	67477032	ID=Msa1118730;Name=Msa1118730
chr7_3	mRNA	67477032	67487468	67477032	ID=Msa1118730-mRNA-1;Parent=Msa1118730;Name=Msa1118730-mRNA-1;_AED=0.06;_eAED=0.06;_QI=0\|1\|0.95\|1\|1\|1\|21\|643\|1191
chr7_3	exon	67477032	67477930	67477032	ID=Msa1118730-mRNA-1:exon:16564;Parent=Msa1118730-mRNA-1
chr7_3	exon	67478719	67479277	67478719	ID=Msa1118730-mRNA-1:exon:16565;Parent=Msa1118730-mRNA-1
chr7_3	exon	67479521	67479724	67479521	ID=Msa1118730-mRNA-1:exon:16566;Parent=Msa1118730-mRNA-1
chr7_3	exon	67480413	67480517	67480413	ID=Msa1118730-mRNA-1:exon:16567;Parent=Msa1118730-mRNA-1
chr7_3	exon	67480952	67481017	67480952	ID=Msa1118730-mRNA-1:exon:16568;Parent=Msa1118730-mRNA-1
chr7_3	exon	67481137	67481301	67481137	ID=Msa1118730-mRNA-1:exon:16569;Parent=Msa1118730-mRNA-1
chr7_3	exon	67481458	67481532	67481458	ID=Msa1118730-mRNA-1:exon:16570;Parent=Msa1118730-mRNA-1
chr7_3	exon	67481656	67481807	67481656	ID=Msa1118730-mRNA-1:exon:16571;Parent=Msa1118730-mRNA-1
chr7_3	exon	67482194	67482329	67482194	ID=Msa1118730-mRNA-1:exon:16572;Parent=Msa1118730-mRNA-1
chr7_3	exon	67482410	67482479	67482410	ID=Msa1118730-mRNA-1:exon:16573;Parent=Msa1118730-mRNA-1
chr7_3	exon	67482575	67482702	67482575	ID=Msa1118730-mRNA-1:exon:16574;Parent=Msa1118730-mRNA-1
chr7_3	exon	67482786	67482842	67482786	ID=Msa1118730-mRNA-1:exon:16575;Parent=Msa1118730-mRNA-1
chr7_3	exon	67483645	67483830	67483645	ID=Msa1118730-mRNA-1:exon:16576;Parent=Msa1118730-mRNA-1
chr7_3	exon	67483929	67484021	67483929	ID=Msa1118730-mRNA-1:exon:16577;Parent=Msa1118730-mRNA-1
chr7_3	exon	67484632	67484717	67484632	ID=Msa1118730-mRNA-1:exon:16578;Parent=Msa1118730-mRNA-1
chr7_3	exon	67484854	67484920	67484854	ID=Msa1118730-mRNA-1:exon:16579;Parent=Msa1118730-mRNA-1
chr7_3	exon	67485025	67485091	67485025	ID=Msa1118730-mRNA-1:exon:16580;Parent=Msa1118730-mRNA-1
chr7_3	exon	67485291	67485427	67485291	ID=Msa1118730-mRNA-1:exon:16581;Parent=Msa1118730-mRNA-1
chr7_3	exon	67486291	67486382	67486291	ID=Msa1118730-mRNA-1:exon:16582;Parent=Msa1118730-mRNA-1
chr7_3	exon	67486488	67486554	67486488	ID=Msa1118730-mRNA-1:exon:16583;Parent=Msa1118730-mRNA-1
chr7_3	exon	67486661	67487468	67486661	ID=Msa1118730-mRNA-1:exon:16584;Parent=Msa1118730-mRNA-1
chr7_3	CDS	67477032	67477930	67477032	ID=Msa1118730-mRNA-1:cds;Parent=Msa1118730-mRNA-1
chr7_3	CDS	67478719	67479277	67478719	ID=Msa1118730-mRNA-1:cds;Parent=Msa1118730-mRNA-1
chr7_3	CDS	67479521	67479724	67479521	ID=Msa1118730-mRNA-1:cds;Parent=Msa1118730-mRNA-1
chr7_3	CDS	67480413	67480517	67480413	ID=Msa1118730-mRNA-1:cds;Parent=Msa1118730-mRNA-1
chr7_3	CDS	67480952	67481017	67480952	ID=Msa1118730-mRNA-1:cds;Parent=Msa1118730-mRNA-1
chr7_3	CDS	67481137	67481301	67481137	ID=Msa1118730-mRNA-1:cds;Parent=Msa1118730-mRNA-1
chr7_3	CDS	67481458	67481532	67481458	ID=Msa1118730-mRNA-1:cds;Parent=Msa1118730-mRNA-1
chr7_3	CDS	67481656	67481807	67481656	ID=Msa1118730-mRNA-1:cds;Parent=Msa1118730-mRNA-1
chr7_3	CDS	67482194	67482329	67482194	ID=Msa1118730-mRNA-1:cds;Parent=Msa1118730-mRNA-1
chr7_3	CDS	67482410	67482479	67482410	ID=Msa1118730-mRNA-1:cds;Parent=Msa1118730-mRNA-1
chr7_3	CDS	67482575	67482702	67482575	ID=Msa1118730-mRNA-1:cds;Parent=Msa1118730-mRNA-1
chr7_3	CDS	67482786	67482842	67482786	ID=Msa1118730-mRNA-1:cds;Parent=Msa1118730-mRNA-1
chr7_3	CDS	67483645	67483830	67483645	ID=Msa1118730-mRNA-1:cds;Parent=Msa1118730-mRNA-1
chr7_3	CDS	67483929	67484021	67483929	ID=Msa1118730-mRNA-1:cds;Parent=Msa1118730-mRNA-1
chr7_3	CDS	67484632	67484717	67484632	ID=Msa1118730-mRNA-1:cds;Parent=Msa1118730-mRNA-1
chr7_3	CDS	67484854	67484920	67484854	ID=Msa1118730-mRNA-1:cds;Parent=Msa1118730-mRNA-1
chr7_3	CDS	67485025	67485091	67485025	ID=Msa1118730-mRNA-1:cds;Parent=Msa1118730-mRNA-1
chr7_3	CDS	67485291	67485427	67485291	ID=Msa1118730-mRNA-1:cds;Parent=Msa1118730-mRNA-1
chr7_3	CDS	67486291	67486382	67486291	ID=Msa1118730-mRNA-1:cds;Parent=Msa1118730-mRNA-1
chr7_3	CDS	67486488	67486554	67486488	ID=Msa1118730-mRNA-1:cds;Parent=Msa1118730-mRNA-1
chr7_3	CDS	67486661	67486825	67486661	ID=Msa1118730-mRNA-1:cds;Parent=Msa1118730-mRNA-1
chr7_3	three_prime_UTR	67486826	67487468	67486826	ID=Msa1118730-mRNA-1:three_prime_utr;Parent=Msa1118730-mRNA-1

Gene Sequence

>Msa1118730

AGGCGGAAAGTGAATAGGATAAGAAAGTTTAGGGAGGCGAATCACCCCGCCATTCAAAACCAAAAGCAAAACCCTTATTTTCGAGCAGCAGAGAGAGAACACTTCTTTCTTCCCTCCCTTTCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGCCCTATCCATCAAAAACACTCTGTCTCAATTCAATTCAATTCAATTCAATTCACAACGATGGCGTTGAACGATCAAAACCAGGCACAAATGGCTCTAATTCTAGGACCGGATTCAACCCACTTCGAATCCCTAATCACAAACCTCATGTCCACCATCAACGACCAACGTTCCCAAGCCGAAAATCTCTTCAATCTCTGCAAACAAACCTATCCCGATTCCTTAATCCTCAAACTCTCTCACCTCCTCCACACTTCCCCTAACCCCGAAACACGCACCATGTCCACCATCCTCCTCCGTCGTCATCTCACGCGCCACCACGACGACTCTTTCATCTATCCACACCTCTCCCCTTCAACTCAATCCACTCTCCGTTCTCTTCTTCTCTCATCTCTCCATCAAGAACCAATCAAATCCATCGTTAAGAAGCTATGCGACACCGTTTCGGAACTCGCTTCTGCTCTTCTCTCTGATGACCTCGCTTCTTGGCCTGACTTGCTTCCGCTTCTTTTTCAATGGGTTACTTCCAATGATGCTAGGCTTCAGGAGATTGCGTTGCTTGTGTTCGCGCAATTGGCGCATTATATTGGTGAAACCCTACTTCCTCAATTGTCTACTCTTCATTCTGTTTTTCTTCGTTGTCTTAGTGCTGCTACTTCCTCTTCGGATGTTCGTATTGCCGCCCTTGCTGCAAGTATCAATTTCGTTCAGTGTCTCTCCAATTCATCCGACCGTGACAGGTTTCAGGATTTGCTGCCCCTCATGATGCAGACATTGACTGAGGCATTGAATTCTGGTCAAGAGGCAACTGCACAGGAGGCACTTGAACTTCTCATTGAGCTTGCTGGGACTGAGCCACGTTTCCTGCGGAGGCAAATTGTTGACATTGTTGGTGCCATGCTGCAGATTGCCGAGGCTGAGTCATTAGAAGAAGGGACTCGCCATTTGGCTATTGAGTTTGTTGTTACACTTGCTGAGGCGAGAGAGCGTGCTCCTGGGATGATGAGGAAGTTACCGCAGTTTGTAAAGAAGTTGTTTGGTGTGCTAATGAATTTGTTGTTGGATATTGAGGATGATCCTGCTTGGCATGCTGCGGTGAGCGAGGATGATGATGCTGGTGAGACTAGTAACTACGGATTTGGTCAGGAATGTTTAGATAGACTTTCAATTGCTTTGGGCGGGAACACGATAGTGCCAGTTGCGTCTGAATTGCTGCCAACTTATTTGGCTGCCCCTGAATGGCAAAAACACCATGCTGCACTCGTTGCACTTGCACAAATTGCAGAGGGTTGTTCAAAGGTGATGACAAAGAATTTGGAGCATGTATTATCAATGGTTTTGAATTCATTTCCTGATCCAAACCCTCGGGTGCGGTGGGCGGCTATAAATGCAATTGGGCAATTGTCCACAGATTTGGGGCCAGACTTGCAGGATAAATATCACCACTTAGTGCTTCCGGCATTAGCTGGAGCCATGGATGATTTTCAAAATCCTCGAGTACAGGCTCATGCTGCTTCTGCAGTGCTAAATTTCACTGAGAATTGCACCCCAGATATTTTAGTACCTTATTTGGATGGGATTGTGAGCAAACTTCTTGTACTCCTTCAGAGTGGAAAGCAGATGGTTCAAGAGGGTGCTTTGACAGCTTTAGCATCAGTCGCTGATTCTTCACAGGAGAAATTTCAGAAGTATTATGATGCTGTGATTCCATACCTAAAAGCAATTTTGTTGAATGCAAATGATAAATCTAATCGTATGCTTCGTGCCAAAGCAATGGAGTGTATTAGTTTGGTAGGTATGGCTGTTGGAAAAGAGAAGTTCAGGGACGATGCCAAACAGGTTATGGATGTCTTGATGTCACTGCAACAATCTCAACTGGATTCTGATGATCCAACCGCGAGTTACATGTTACAAGCGTGGGCTAGGCTTTGCAAGTGCCTCGGGCAGGACTTCCTCCCATACATGGGTTTTGTCATGCCTCCCTTGCTCCAGTCTGCACAACTTAAGCCTGACGTGTCAATTACATCAGCAGATTCTGACGCTGAATTTGATGAAGATGATGACAGCATTGAAACCATTACTCTCGGGGATAAAAGAATAGGCATTAAGACCAGTGTCTTGGAGGAGAAGGCTACAGCATGTAACATGTTATGTTGCTACGCTGATGAGTTGAAGGAAGGCTTTTTTCCTTGGATTGACCAGGTTGCTTCCACATTGGTTCCTCTCCTTAAATTTTACTTCCATGAAGAAGTTAGGAAGGCAGCAGCTTCAGCTATGCCAGAACTGTTGTCTTCAGCAAAATCGGCTATAGAGAAGGGGCAGTCACAAGGCCGTGACGCAACATACCTAAAACAATTGTCTGATTATATAATTCCAAATTTGGTGGAAGCTTTACACAAGGAGCCAGAGGTAGAAATTTGTGCAAGCATGTTGGGCGCACTGAATGAATGCATACAGGTATCAGGACCACATCTAGATGAAAAGCAAGTAAGGAGCATTGTGGATGAGATTAAACAAGTCATCACTGCCAGTTCATCCAGAAAGCATGAAAGAGCAGAGAGAGCCAAAGAAGAGGACTTTGATGCTGAAGAAAGAGAACTACTCAAGGAAGAAAATGAGTTAGAAGAAGAACTTTTTGATCAAATTGGCGATTGCTTGGGGACTTTGACAAAAACATTTAGGGCATCTTTTTTGCCTTTCTTTGAAGAGCTTTCGTCATACTTAACACCTATGTTTGGTAAAGACAAAACCTCAGAGGAAAGGAGAATTGCCATTTGTATATTTGATGACATTGCTGAGCACTGCCGCGAAGCAGCTCATAAATATTATGGTTTGTTTCTTCCATTCTTGCTTGAAGCTTGCAATGATGAGTGTTCAGATGTTCGACAGGCAGCTGTTTATGGGGTTGGTGTCTGTGCCGAGTTTGGTGGATCTGTTTTCAAACCCCTTGTTGGAGAGGCACTTTCAAGGTTAAATGCTGTGATAACACATCCCAATGCACAGCATTCTGATAATGTAATGGCATATGATAATGCTGTTTCAGCTCTTGGAAAAATATGCCAGTTCCACCGTGATAGCATAAATGCAGCACAGGTTGTTCCAGCCTGGCTAAGTTGCTTGCCTATAAAAGGTGATTTAATCGAGGCTAAGGTTGTGCATGACCTTCTTTGTTCAATGGTTGAAAGATCAGATAAAGAACTTATAGGCCATAACAATCAATATCTTTCCAAGATCGTTGCAATTTTTGCCGAGATATTATGTGCGGGGACTGATTTGGCAACTGAACAAACTGTGAGTCGGATGATTAATTTATTGAGACAACTTCAACAAACTTTGCCGCCTTCTACCCTTGCTTCAACCTGGTCATCGTTGCACCCTCAACAACAACTTGCACTTCAGTCCATCCTATCATCCTAA

Protein sequence

>Msa1118730

RRKVNRIRKFREANHPAIQNQKQNPYFRAAEREHFFLPSLSSLSLSLSLSLSLCPIHQKHSVSIQFNSIQFTTMALNDQNQAQMALILGPDSTHFESLITNLMSTINDQRSQAENLFNLCKQTYPDSLILKLSHLLHTSPNPETRTMSTILLRRHLTRHHDDSFIYPHLSPSTQSTLRSLLLSSLHQEPIKSIVKKLCDTVSELASALLSDDLASWPDLLPLLFQWVTSNDARLQEIALLVFAQLAHYIGETLLPQLSTLHSVFLRCLSAATSSSDVRIAALAASINFVQCLSNSSDRDRFQDLLPLMMQTLTEALNSGQEATAQEALELLIELAGTEPRFLRRQIVDIVGAMLQIAEAESLEEGTRHLAIEFVVTLAEARERAPGMMRKLPQFVKKLFGVLMNLLLDIEDDPAWHAAVSEDDDAGETSNYGFGQECLDRLSIALGGNTIVPVASELLPTYLAAPEWQKHHAALVALAQIAEGCSKVMTKNLEHVLSMVLNSFPDPNPRVRWAAINAIGQLSTDLGPDLQDKYHHLVLPALAGAMDDFQNPRVQAHAASAVLNFTENCTPDILVPYLDGIVSKLLVLLQSGKQMVQEGALTALASVADSSQEKFQKYYDAVIPYLKAILLNANDKSNRMLRAKAMECISLVGMAVGKEKFRDDAKQVMDVLMSLQQSQLDSDDPTASYMLQAWARLCKCLGQDFLPYMGFVMPPLLQSAQLKPDVSITSADSDAEFDEDDDSIETITLGDKRIGIKTSVLEEKATACNMLCCYADELKEGFFPWIDQVASTLVPLLKFYFHEEVRKAAASAMPELLSSAKSAIEKGQSQGRDATYLKQLSDYIIPNLVEALHKEPEVEICASMLGALNECIQVSGPHLDEKQVRSIVDEIKQVITASSSRKHERAERAKEEDFDAEERELLKEENELEEELFDQIGDCLGTLTKTFRASFLPFFEELSSYLTPMFGKDKTSEERRIAICIFDDIAEHCREAAHKYYGLFLPFLLEACNDECSDVRQAAVYGVGVCAEFGGSVFKPLVGEALSRLNAVITHPNAQHSDNVMAYDNAVSALGKICQFHRDSINAAQVVPAWLSCLPIKGDLIEAKVVHDLLCSMVERSDKELIGHNNQYLSKIVAIFAEILCAGTDLATEQTVSRMINLLRQLQQTLPPSTLASTWSSLHPQQQLALQSILSS*