AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1118840

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1118840 MtrunA17_Chr7g0253221 98.207 502 9 0 1 502 1 502 0.0 1005
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1118840 AT1G16350.1 72.000 500 134 3 8 502 4 502 0.0 714
Msa1118840 AT1G79470.1 69.261 501 147 4 8 502 4 503 0.0 695

Find 184 sgRNAs with CRISPR-Local

Find 343 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTACACAGCTCATTATTTAT+TGG 0.161394 7_3:+67616422 None:intergenic
AAATTCTATCCATTAGATTT+TGG 0.164726 7_3:-67616231 Msa1118840:three_prime_UTR
ATTGGAGCTCTTCTAAGTTT+TGG 0.178577 7_3:-67616364 Msa1118840:three_prime_UTR
GGGTCTTAATTCAGAACTTT+GGG 0.272874 7_3:+67616301 None:intergenic
CGTGAGAGTTTCCTATTATA+TGG 0.275975 7_3:-67619654 Msa1118840:CDS
CTTACTGCTTGCATGGTATA+TGG 0.277853 7_3:+67617719 None:intergenic
TATCCTGAGTTAGATGTTAT+TGG 0.295671 7_3:-67619287 Msa1118840:CDS
TAAGGAGAGGTTAGAGCATT+TGG 0.304384 7_3:-67619399 Msa1118840:CDS
GGATGAGGAGGTGGTGGATT+TGG 0.311743 7_3:-67619537 Msa1118840:CDS
CACAGAACCCTTGTCTTTAA+CGG 0.321519 7_3:+67617754 None:intergenic
ATAAAAGAGAGCACTTCTAT+TGG 0.326717 7_3:-67616382 Msa1118840:three_prime_UTR
GATTCTGTTACTAAAATAAA+AGG 0.335337 7_3:+67619746 None:intergenic
CGGAGGAGCCTCCATATAAT+AGG 0.338228 7_3:+67619643 None:intergenic
CTATTATATGGAGGCTCCTC+CGG 0.341616 7_3:-67619642 Msa1118840:CDS
AGGGAATTCTATTTATCAAT+TGG 0.351573 7_3:-67619336 Msa1118840:CDS
GGCGGATGGAGAGTGGATGG+TGG 0.364010 7_3:-67619450 Msa1118840:CDS
CTCAGGAAGTTTGCGCGGTT+GGG 0.364915 7_3:-67619169 Msa1118840:CDS
GAGGAAATGAAGAAGAGAAA+TGG 0.373725 7_3:-67619581 Msa1118840:CDS
AATTCTACTGGAAAATTTCT+CGG 0.374014 7_3:-67619719 Msa1118840:CDS
TGGGTCTTAATTCAGAACTT+TGG 0.374253 7_3:+67616300 None:intergenic
CACGCCCTTGTCATTTCGAT+TGG 0.374644 7_3:+67619673 None:intergenic
CTAAAAGAACCAAAATCTAA+TGG 0.375172 7_3:+67616222 None:intergenic
TTGAGAGTTGGTATGGGATC+TGG 0.375174 7_3:-67619206 Msa1118840:CDS
CACTGTCTCCGAATCCTCTA+TGG 0.382113 7_3:-67619942 Msa1118840:CDS
TGGTGTGAATGCTGTGGTTT+TGG 0.382670 7_3:-67619369 Msa1118840:CDS
TTCTTAGATCCAGGGTGTTA+AGG 0.386012 7_3:-67617646 Msa1118840:CDS
CTTCTCTCCGACAACCACTA+TGG 0.388746 7_3:-67620155 Msa1118840:exon
GTCATTTCGATTGGACCAAT+TGG 0.388934 7_3:+67619682 None:intergenic
CTGGTAGTCTCGAGGCTCCC+GGG 0.392525 7_3:-67618309 Msa1118840:CDS
GCTGGTAGTCTCGAGGCTCC+CGG 0.396502 7_3:-67618310 Msa1118840:CDS
TCCCGGGGCTTATGTATATC+AGG 0.403376 7_3:-67618293 Msa1118840:intron
TTGATTCAAGCTGGTGTTGA+TGG 0.407424 7_3:-67619230 Msa1118840:CDS
AGAGGATCGGTTGGGGCGGA+TGG 0.408659 7_3:-67619464 Msa1118840:CDS
GCTTCTGCCATGGCCGCACT+TGG 0.408941 7_3:-67619920 Msa1118840:CDS
TGATGGGTTGAGAGTTGGTA+TGG 0.414297 7_3:-67619213 Msa1118840:CDS
ATCGTAAAAGCTTTATCGTT+GGG 0.419043 7_3:-67618364 Msa1118840:CDS
ACTCAGGAAGTTTGCGCGGT+TGG 0.425370 7_3:-67619170 Msa1118840:CDS
GATGGTGGCATCTCAAACTC+TGG 0.425465 7_3:-67618391 Msa1118840:CDS
AAAATTGCCCAAGGGGTTGT+TGG 0.425681 7_3:-67617779 Msa1118840:CDS
CACATGACCTTCTTAGATCC+AGG 0.426297 7_3:-67617655 Msa1118840:CDS
AAATGGAAATGTTGTTGCTT+TGG 0.427126 7_3:-67619564 Msa1118840:CDS
ATCCGCCCCAACCGATCCTC+TGG 0.428483 7_3:+67619466 None:intergenic
ACAGAATCTGGTAATTCTAC+TGG 0.429318 7_3:-67619731 Msa1118840:CDS
CAGGTTGAAGGAGGAATTCA+TGG 0.430215 7_3:-67616485 Msa1118840:CDS
GGCAGAAGCCATAGAGGATT+CGG 0.431522 7_3:+67619934 None:intergenic
TCTGCCATGGCCGCACTTGG+CGG 0.433855 7_3:-67619917 Msa1118840:CDS
GGTGACTCAATGCATGGAAA+TGG 0.441521 7_3:+67620323 None:intergenic
GAAGTTTGCGCGGTTGGGCG+TGG 0.443788 7_3:-67619164 Msa1118840:CDS
TCCCTTCGTCGCTTCTCCTA+TGG 0.443897 7_3:-67619966 Msa1118840:CDS
TGCCTTGAGTCATAGCTTCA+AGG 0.443952 7_3:+67617837 None:intergenic
GCGGATGGAGAGTGGATGGT+GGG 0.445959 7_3:-67619449 Msa1118840:CDS
TATTATATGGAGGCTCCTCC+GGG 0.454416 7_3:-67619641 Msa1118840:CDS
AACGGCTCCAACAACCCCTT+GGG 0.454984 7_3:+67617772 None:intergenic
ACAGGGAACTGCTGTTTACA+AGG 0.456183 7_3:-67618455 Msa1118840:intron
ATTCCGTTAGAATATAAACT+TGG 0.457739 7_3:-67616272 Msa1118840:three_prime_UTR
TGTGCCTATCCTCTCTGAAC+CGG 0.459765 7_3:-67619822 Msa1118840:CDS
GATGATTAAATATGTGAAGA+AGG 0.460528 7_3:-67619312 Msa1118840:CDS
GGATGGAGAGTGGATGGTGG+GGG 0.460745 7_3:-67619447 Msa1118840:CDS
CGGATGGAGAGTGGATGGTG+GGG 0.464751 7_3:-67619448 Msa1118840:CDS
ATCGTAAGTGTAAGAGAAAC+CGG 0.465136 7_3:+67620078 None:intergenic
GGGAGCATCGACTGTTATGA+TGG 0.465926 7_3:-67618344 Msa1118840:CDS
CACGTCAGGCGGCTATTGTC+CGG 0.469649 7_3:-67619862 Msa1118840:CDS
TTTGGTGAAGGATGAGGAGG+TGG 0.469999 7_3:-67619546 Msa1118840:CDS
GAGAGAAGAGAGAGTGAAGT+AGG 0.471389 7_3:+67620170 None:intergenic
AGCGACGAAGGGAGTTGAAA+GGG 0.472950 7_3:+67619976 None:intergenic
TAACGGCTCCAACAACCCCT+TGG 0.477673 7_3:+67617771 None:intergenic
TGGTGACCAGAGGATCGGTT+GGG 0.479104 7_3:-67619472 Msa1118840:CDS
TATTCTAACGGAATTACAAT+GGG 0.479501 7_3:+67616281 None:intergenic
TGACGTGAAGGAGTGTTGTT+AGG 0.479927 7_3:+67619878 None:intergenic
GAGGAGGTTGAGAGGGTGAG+AGG 0.484489 7_3:-67619506 Msa1118840:CDS
ACTGGAGCGGCACAGGTTGA+AGG 0.489508 7_3:-67616497 Msa1118840:CDS
GGGGATGTTACGACTGAGAC+GGG 0.496253 7_3:+67619997 None:intergenic
GGTGAAGGATGAGGAGGTGG+TGG 0.498024 7_3:-67619543 Msa1118840:CDS
TCATCCATTGCTTATAAAAG+TGG 0.502800 7_3:-67618430 Msa1118840:CDS
CACGGCGGGACTTGGCAGTC+CGG 0.503608 7_3:+67619843 None:intergenic
GGTGTTGATGGGTTGAGAGT+TGG 0.507985 7_3:-67619218 Msa1118840:CDS
ATCCTCTATGGCTTCTGCCA+TGG 0.508811 7_3:-67619930 Msa1118840:CDS
GACAAAAGAGGAGGTTGAGA+GGG 0.509210 7_3:-67619513 Msa1118840:CDS
TGTTGCTTTGGTGAAGGATG+AGG 0.509593 7_3:-67619552 Msa1118840:CDS
CCTGAGTTAGATGTTATTGG+TGG 0.510947 7_3:-67619284 Msa1118840:CDS
TGAAGGAGGAATTCATGGAC+TGG 0.511160 7_3:-67616480 Msa1118840:CDS
CGGTTGGGGCGGATGGAGAG+TGG 0.513980 7_3:-67619457 Msa1118840:CDS
GGTGACCAGAGGATCGGTTG+GGG 0.516568 7_3:-67619471 Msa1118840:CDS
TTAGAGCATTTGGTGAAAGC+TGG 0.518134 7_3:-67619389 Msa1118840:CDS
CACCCAAGTTTATATTCTAA+CGG 0.518664 7_3:+67616269 None:intergenic
CATATACCATGCAAGCAGTA+AGG 0.518987 7_3:-67617718 Msa1118840:CDS
TGGGGCGGATGGAGAGTGGA+TGG 0.519730 7_3:-67619453 Msa1118840:CDS
TAACAACACTCCTTCACGTC+AGG 0.521517 7_3:-67619876 Msa1118840:CDS
GCCGAAGGAGAGACGAAAAC+CGG 0.522856 7_3:+67619803 None:intergenic
TGGGACGAGGGAACAAGATA+AGG 0.524651 7_3:-67619417 Msa1118840:CDS
TGGTTCTATTTGTACTACTC+AGG 0.528310 7_3:-67619186 Msa1118840:CDS
ATGATGGGAAGCTTCTTAGC+TGG 0.528805 7_3:-67618328 Msa1118840:CDS
TATCGTAAAAGCTTTATCGT+TGG 0.531193 7_3:-67618365 Msa1118840:CDS
GATCCTCTGGTCACCAACTT+CGG 0.531801 7_3:+67619479 None:intergenic
ACCTTGCCTTACTGCTTGCA+TGG 0.532254 7_3:+67617712 None:intergenic
TGCTTTGGTGAAGGATGAGG+AGG 0.533611 7_3:-67619549 Msa1118840:CDS
GACCAGAGGATCGGTTGGGG+CGG 0.534570 7_3:-67619468 Msa1118840:CDS
AAGCGACGAAGGGAGTTGAA+AGG 0.540703 7_3:+67619975 None:intergenic
GTCCATAGGAGAAGCGACGA+AGG 0.542663 7_3:+67619964 None:intergenic
TTGGTGACCAGAGGATCGGT+TGG 0.544869 7_3:-67619473 Msa1118840:CDS
AACTGAACATGATGATGACT+TGG 0.546366 7_3:-67620349 Msa1118840:five_prime_UTR
TGACAAAAGAGGAGGTTGAG+AGG 0.547501 7_3:-67619514 Msa1118840:CDS
GCTGAGAATTTGATTCAAGC+TGG 0.548614 7_3:-67619239 Msa1118840:CDS
TTAACACCCTGGATCTAAGA+AGG 0.559140 7_3:+67617648 None:intergenic
GGTGGATTTGGTGACAAAAG+AGG 0.559564 7_3:-67619525 Msa1118840:CDS
TTCCGTTAGAATATAAACTT+GGG 0.560645 7_3:-67616271 Msa1118840:three_prime_UTR
GATTCGGAGACAGTGTCCAT+AGG 0.561445 7_3:+67619950 None:intergenic
GAGTTCCACGGTAGAGAACC+CGG 0.562545 7_3:+67619623 None:intergenic
TAACCGTCTTCGATTGGCGG+AGG 0.564397 7_3:+67620124 None:intergenic
ACTCCTCCGCCAATCGAAGA+CGG 0.564726 7_3:-67620127 Msa1118840:CDS
ATATTCTAACGGAATTACAA+TGG 0.565030 7_3:+67616280 None:intergenic
TGATTCAAGCTGGTGTTGAT+GGG 0.565423 7_3:-67619229 Msa1118840:CDS
GTGAAATCCATAGTGGTTGT+CGG 0.566033 7_3:+67620148 None:intergenic
GATGGGTTGAGAGTTGGTAT+GGG 0.574553 7_3:-67619212 Msa1118840:CDS
GTGTTGAAATGTGTTTGTAG+TGG 0.575042 7_3:+67620240 None:intergenic
GGTGAGAGGCTATCCGAAGT+TGG 0.575095 7_3:-67619492 Msa1118840:CDS
GGAGTTCCTGTCATTGCTGA+TGG 0.577457 7_3:-67618409 Msa1118840:CDS
TGACTCAAGGCAGTGATCAA+AGG 0.583071 7_3:-67617826 Msa1118840:CDS
ACCTGATATACATAAGCCCC+GGG 0.583275 7_3:+67618292 None:intergenic
TGTTGGAGCCGTTAAAGACA+AGG 0.584144 7_3:-67617762 Msa1118840:CDS
TACCTGATATACATAAGCCC+CGG 0.587984 7_3:+67618291 None:intergenic
GCGTAACCGTCTTCGATTGG+CGG 0.588487 7_3:+67620121 None:intergenic
AGAGAGGATAGGCACACGGC+GGG 0.589663 7_3:+67619829 None:intergenic
TTTCCTCTTCAATCTTCGCA+AGG 0.590215 7_3:+67619597 None:intergenic
TCCCTTGAAGCTATGACTCA+AGG 0.591282 7_3:-67617839 Msa1118840:CDS
GGTCTTAATTCAGAACTTTG+GGG 0.596476 7_3:+67616302 None:intergenic
ATGCCACCATCAGCAATGAC+AGG 0.596778 7_3:+67618403 None:intergenic
AAATGTTGTTGCTTTGGTGA+AGG 0.599445 7_3:-67619558 Msa1118840:CDS
GTTCCTGTCATTGCTGATGG+TGG 0.600022 7_3:-67618406 Msa1118840:CDS
CTGAGTTAGATGTTATTGGT+GGG 0.602937 7_3:-67619283 Msa1118840:CDS
GCAAAGCTTAAAATTGCCCA+AGG 0.602956 7_3:-67617788 Msa1118840:CDS
CAACACTCCTTCACGTCAGG+CGG 0.604618 7_3:-67619873 Msa1118840:CDS
TGACCTTGCGAAGATTGAAG+AGG 0.605198 7_3:-67619600 Msa1118840:CDS
CAAAGCTTAAAATTGCCCAA+GGG 0.607807 7_3:-67617787 Msa1118840:CDS
TACCTCTAGCCTTAACACCC+TGG 0.607961 7_3:+67617637 None:intergenic
CTGTAGTTTATAATAGAACA+TGG 0.608139 7_3:-67616337 Msa1118840:three_prime_UTR
TGTAGTGAGGGAGGAAGATG+AGG 0.611469 7_3:+67620053 None:intergenic
TCCATAGGAGAAGCGACGAA+GGG 0.611484 7_3:+67619965 None:intergenic
ATCCAGGGTGTTAAGGCTAG+AGG 0.611715 7_3:-67617639 Msa1118840:intron
CGGCGAAGTCGATGTAGTGA+GGG 0.612539 7_3:+67620041 None:intergenic
GCGGCGAAGTCGATGTAGTG+AGG 0.613902 7_3:+67620040 None:intergenic
ATGTGCAGACTGCAGAGAGT+TGG 0.614113 7_3:+67617673 None:intergenic
TACGACTGAGACGGGAGGAG+AGG 0.614422 7_3:+67620005 None:intergenic
GGCAGTGATCAAAGGTACCT+CGG 0.616960 7_3:-67617818 Msa1118840:CDS
GGAGCATCGACTGTTATGAT+GGG 0.618284 7_3:-67618343 Msa1118840:CDS
GCCTTGAGTCATAGCTTCAA+GGG 0.619235 7_3:+67617838 None:intergenic
GCGACGAAGGGAGTTGAAAG+GGG 0.619315 7_3:+67619977 None:intergenic
CTCCTCCGGGTTCTCTACCG+TGG 0.620716 7_3:-67619628 Msa1118840:CDS
GAAGTTGGTGACCAGAGGAT+CGG 0.622080 7_3:-67619477 Msa1118840:CDS
AACAGCGATACCGCCAAGTG+CGG 0.624789 7_3:+67619907 None:intergenic
TACTACTCAGGAAGTTTGCG+CGG 0.625490 7_3:-67619174 Msa1118840:CDS
GAGAGTTTCCTATTATATGG+AGG 0.625795 7_3:-67619651 Msa1118840:CDS
GTTGGAGCCGTTAAAGACAA+GGG 0.626283 7_3:-67617761 Msa1118840:CDS
CGGAGGAGTGAAATCCATAG+TGG 0.626435 7_3:+67620141 None:intergenic
TTGGTCCAATCGAAATGACA+AGG 0.627219 7_3:-67619678 Msa1118840:CDS
AAAGCTTAAAATTGCCCAAG+GGG 0.628138 7_3:-67617786 Msa1118840:CDS
TGGTAGTCTCGAGGCTCCCG+GGG 0.630926 7_3:-67618308 Msa1118840:CDS
ACATGACCTTCTTAGATCCA+GGG 0.631372 7_3:-67617654 Msa1118840:CDS
CCACCAATAACATCTAACTC+AGG 0.635588 7_3:+67619284 None:intergenic
TGTCCAGGTTCGTACTGGAG+CGG 0.638463 7_3:-67616510 Msa1118840:intron
GGCCATGGCAGAAGCCATAG+AGG 0.638566 7_3:+67619928 None:intergenic
CGAAGTCGATGTAGTGAGGG+AGG 0.643395 7_3:+67620044 None:intergenic
CTTCTTAGCTGGTAGTCTCG+AGG 0.644935 7_3:-67618317 Msa1118840:CDS
CGACGAAGGGAGTTGAAAGG+GGG 0.648483 7_3:+67619978 None:intergenic
CGAGGGAACAAGATAAGGAG+AGG 0.649099 7_3:-67619412 Msa1118840:CDS
TATCCGAAGTTGGTGACCAG+AGG 0.650093 7_3:-67619482 Msa1118840:CDS
ACCATGCAAGCAGTAAGGCA+AGG 0.650696 7_3:-67617713 Msa1118840:CDS
TCAGAATCGATTACTGCCGA+AGG 0.651499 7_3:+67619788 None:intergenic
GCCAATCGAAGACGGTTACG+CGG 0.652065 7_3:-67620119 Msa1118840:CDS
GAAAGCTGGTGTGAATGCTG+TGG 0.657777 7_3:-67619375 Msa1118840:CDS
GGAGCGGCACAGGTTGAAGG+AGG 0.660899 7_3:-67616494 Msa1118840:CDS
TTCGCAAGGTCAGAGTTCCA+CGG 0.665644 7_3:+67619611 None:intergenic
AAAACCGGTTCAGAGAGGAT+AGG 0.681418 7_3:+67619818 None:intergenic
GGAGAGGTCGACTTCATCAG+CGG 0.694285 7_3:+67620021 None:intergenic
TGGTCCAATCGAAATGACAA+GGG 0.694909 7_3:-67619677 Msa1118840:CDS
AGACGAAAACCGGTTCAGAG+AGG 0.695318 7_3:+67619813 None:intergenic
GGATTTGGTGACAAAAGAGG+AGG 0.695676 7_3:-67619522 Msa1118840:CDS
GATGTTACGACTGAGACGGG+AGG 0.697292 7_3:+67620000 None:intergenic
GTTCAGAGAGGATAGGCACA+CGG 0.728183 7_3:+67619825 None:intergenic
AATCGAAGACGGTTACGCGG+CGG 0.728337 7_3:-67620116 Msa1118840:CDS
TAAGCTTTGCTGTATCACCG+AGG 0.732907 7_3:+67617801 None:intergenic
CAGAGAGGATAGGCACACGG+CGG 0.750161 7_3:+67619828 None:intergenic
TAGTTTATAATAGAACATGG+TGG 0.764803 7_3:-67616334 Msa1118840:three_prime_UTR
TTCCACGGTAGAGAACCCGG+AGG 0.800431 7_3:+67619626 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATAACTTATTTTAATCATTT+TGG + chr7_3:67616249-67616268 None:intergenic 10.0%
!!! AAGAAAGTATTAAAAATAAA+AGG - chr7_3:67617924-67617943 Msa1118840:intron 10.0%
!!! AGAAAGTATTAAAAATAAAA+GGG - chr7_3:67617925-67617944 Msa1118840:intron 10.0%
!! AAAAAAAAATTCTAATTAGT+TGG - chr7_3:67619589-67619608 Msa1118840:CDS 10.0%
!! AAAAAAAATTCTAATTAGTT+GGG - chr7_3:67619590-67619609 Msa1118840:CDS 10.0%
!!! TCATAATATTTTGAAGATAA+TGG - chr7_3:67619884-67619903 Msa1118840:CDS 15.0%
!! ATCAAGTAAAAAAAATAGTA+AGG + chr7_3:67620364-67620383 None:intergenic 15.0%
!!! ACAATATTCTAAAAATCCAA+CGG - chr7_3:67616277-67616296 Msa1118840:three_prime_UTR 20.0%
!! GATTCTGTTACTAAAATAAA+AGG + chr7_3:67616805-67616824 None:intergenic 20.0%
!!! TTTATTTTAGTAACAGAATC+TGG - chr7_3:67616805-67616824 Msa1118840:intron 20.0%
!!! TTTTAATACTTTCTTGAGAA+TGG + chr7_3:67617919-67617938 None:intergenic 20.0%
!!! ACAGTTCACAATTTTTAAAA+AGG + chr7_3:67618374-67618393 None:intergenic 20.0%
!!! TTTGAATGTGAAAAGTATTT+CGG - chr7_3:67618440-67618459 Msa1118840:CDS 20.0%
!! TTTCATTTACACAATCAAAA+TGG - chr7_3:67618999-67619018 Msa1118840:intron 20.0%
!!! TTCTTGTTTAAAGAATGAAA+TGG + chr7_3:67619188-67619207 None:intergenic 20.0%
!!! TGTCTTTTACAAAATATAAG+AGG + chr7_3:67619273-67619292 None:intergenic 20.0%
!!! TTTTTTACAAAATAGATAGG+AGG + chr7_3:67619320-67619339 None:intergenic 20.0%
!!! GTCTTTTTTACAAAATAGAT+AGG + chr7_3:67619323-67619342 None:intergenic 20.0%
!! TGTAAAAAAGACAAATATTG+TGG - chr7_3:67619331-67619350 Msa1118840:CDS 20.0%
!! GTAAAAAAGACAAATATTGT+GGG - chr7_3:67619332-67619351 Msa1118840:CDS 20.0%
!! TAAAAAAGACAAATATTGTG+GGG - chr7_3:67619333-67619352 Msa1118840:CDS 20.0%
!! ATTTCTCCAATAAATAAAAG+TGG - chr7_3:67619394-67619413 Msa1118840:CDS 20.0%
!! AAAGATCATTAACATCAAAT+TGG - chr7_3:67619790-67619809 Msa1118840:CDS 20.0%
!! AAAACAAAGATAATCATTTG+AGG + chr7_3:67619817-67619836 None:intergenic 20.0%
!! AATTGAGTAACTTTACATTA+TGG + chr7_3:67619933-67619952 None:intergenic 20.0%
!! AATTGAGTAACATTACATTA+TGG + chr7_3:67620005-67620024 None:intergenic 20.0%
!!! ATGAAAAGAAATACTTTTGA+AGG - chr7_3:67620097-67620116 Msa1118840:CDS 20.0%
!!! AAATTCTATCCATTAGATTT+TGG - chr7_3:67620317-67620336 Msa1118840:five_prime_UTR 20.0%
!! TAAAAAAAATAGTAAGGTCT+TGG + chr7_3:67620358-67620377 None:intergenic 20.0%
! AATTCTACTGGAAAATTTCT+CGG - chr7_3:67616829-67616848 Msa1118840:intron 25.0%
! AGGGAATTCTATTTATCAAT+TGG - chr7_3:67617212-67617231 Msa1118840:intron 25.0%
! GATGATTAAATATGTGAAGA+AGG - chr7_3:67617236-67617255 Msa1118840:intron 25.0%
! GTAAGTTGTTTAACCAAATA+TGG + chr7_3:67617529-67617548 None:intergenic 25.0%
!!! GCTTATTTTATCTTATCTAC+TGG + chr7_3:67617701-67617720 None:intergenic 25.0%
! AGAAAATCATCACTATCTAA+AGG + chr7_3:67617962-67617981 None:intergenic 25.0%
!!! GTTTTTATTTGGTGTGTATA+TGG - chr7_3:67618512-67618531 Msa1118840:intron 25.0%
! TACATTTCTTACTCTTTCTT+TGG - chr7_3:67618561-67618580 Msa1118840:intron 25.0%
! TATATACGAAACTAAATGAC+AGG + chr7_3:67618601-67618620 None:intergenic 25.0%
!!! TTTTTTTTTTTGCTCCAGAA+TGG - chr7_3:67618655-67618674 Msa1118840:intron 25.0%
!! TTCTTATTTATTTCTTGCTC+TGG - chr7_3:67618948-67618967 Msa1118840:intron 25.0%
! AAATGAAACAGCTACAATAA+CGG + chr7_3:67618987-67619006 None:intergenic 25.0%
! CATGAGTTAAATAGAAGATT+AGG + chr7_3:67619049-67619068 None:intergenic 25.0%
! AAAGTTAGGATAACAGTAAT+AGG - chr7_3:67619118-67619137 Msa1118840:intron 25.0%
!! TAAACAAGAAAGCATGAAAA+AGG - chr7_3:67619198-67619217 Msa1118840:CDS 25.0%
! CTTGAATTGAAAATCAAAAG+AGG - chr7_3:67619625-67619644 Msa1118840:CDS 25.0%
!! ATGTCATTTAAGAACCAATT+TGG - chr7_3:67619857-67619876 Msa1118840:CDS 25.0%
! AATATTATGAGAGTCCAAAT+TGG + chr7_3:67619874-67619893 None:intergenic 25.0%
! CTGTAGTTTATAATAGAACA+TGG - chr7_3:67620211-67620230 Msa1118840:five_prime_UTR 25.0%
! TAGTTTATAATAGAACATGG+TGG - chr7_3:67620214-67620233 Msa1118840:five_prime_UTR 25.0%
! TATTCTAACGGAATTACAAT+GGG + chr7_3:67620270-67620289 None:intergenic 25.0%
! ATATTCTAACGGAATTACAA+TGG + chr7_3:67620271-67620290 None:intergenic 25.0%
! ATTCCGTTAGAATATAAACT+TGG - chr7_3:67620276-67620295 Msa1118840:five_prime_UTR 25.0%
! TTCCGTTAGAATATAAACTT+GGG - chr7_3:67620277-67620296 Msa1118840:five_prime_UTR 25.0%
! CTAAAAGAACCAAAATCTAA+TGG + chr7_3:67620329-67620348 None:intergenic 25.0%
!! TGAAGTAGGTTTTTCAACTA+CGG + chr7_3:67616367-67616386 None:intergenic 30.0%
! AAATGGAAATGTTGTTGCTT+TGG - chr7_3:67616984-67617003 Msa1118840:intron 30.0%
TATCCTGAGTTAGATGTTAT+TGG - chr7_3:67617261-67617280 Msa1118840:intron 30.0%
!! TTTGAATAGTTTGTTGCATC+TGG - chr7_3:67617449-67617468 Msa1118840:intron 30.0%
AAACATATGCATGCATAACT+GGG + chr7_3:67617601-67617620 None:intergenic 30.0%
AGTTATGCATGCATATGTTT+GGG - chr7_3:67617601-67617620 Msa1118840:intron 30.0%
CTTTCACTAAACTATTACTG+TGG - chr7_3:67617753-67617772 Msa1118840:CDS 30.0%
TTGTAGCAACAAAAGATCAT+TGG + chr7_3:67617834-67617853 None:intergenic 30.0%
AGACTCGATATTAAGAATCA+GGG + chr7_3:67618066-67618085 None:intergenic 30.0%
TCATCCATTGCTTATAAAAG+TGG - chr7_3:67618118-67618137 Msa1118840:intron 30.0%
!! AACTCCACTTTTATAAGCAA+TGG + chr7_3:67618125-67618144 None:intergenic 30.0%
! TATCGTAAAAGCTTTATCGT+TGG - chr7_3:67618183-67618202 Msa1118840:intron 30.0%
! ATCGTAAAAGCTTTATCGTT+GGG - chr7_3:67618184-67618203 Msa1118840:intron 30.0%
! AATTCACAAGTTTTCATCAG+GGG + chr7_3:67618287-67618306 None:intergenic 30.0%
! CAATTCACAAGTTTTCATCA+GGG + chr7_3:67618288-67618307 None:intergenic 30.0%
! ACAATTCACAAGTTTTCATC+AGG + chr7_3:67618289-67618308 None:intergenic 30.0%
TGATGAAAACTTGTGAATTG+TGG - chr7_3:67618288-67618307 Msa1118840:intron 30.0%
AAGCTTCAAATCTTACGAAA+AGG + chr7_3:67618317-67618336 None:intergenic 30.0%
!!! ACTGACGTGTTGTTTTTATT+TGG - chr7_3:67618501-67618520 Msa1118840:intron 30.0%
AAACTAAATGACAGGAAACA+AGG + chr7_3:67618593-67618612 None:intergenic 30.0%
! TGTCAAAAAGTATAGAGGAA+TGG - chr7_3:67618684-67618703 Msa1118840:intron 30.0%
! GTCAAAAAGTATAGAGGAAT+GGG - chr7_3:67618685-67618704 Msa1118840:intron 30.0%
TTCTATTTAACTCATGCACA+TGG - chr7_3:67619053-67619072 Msa1118840:intron 30.0%
! TGTCATTTGAACATGCTTTA+GGG - chr7_3:67619360-67619379 Msa1118840:CDS 30.0%
!! CACTCACCACTTTTATTTAT+TGG + chr7_3:67619403-67619422 None:intergenic 30.0%
AGATTTCTAATTCTTTCCAC+TGG - chr7_3:67619534-67619553 Msa1118840:CDS 30.0%
ATTGAATTAATCCTTTCCAG+TGG + chr7_3:67619553-67619572 None:intergenic 30.0%
GTATTCACACAAAACACTTA+TGG + chr7_3:67619726-67619745 None:intergenic 30.0%
TGAGTAACTTTACATTATGG+TGG + chr7_3:67619930-67619949 None:intergenic 30.0%
!! TTATCTGCTTTTGAAGACAA+TGG - chr7_3:67619956-67619975 Msa1118840:CDS 30.0%
TGAGTAACATTACATTATGG+TGG + chr7_3:67620002-67620021 None:intergenic 30.0%
CTACACAGCTCATTATTTAT+TGG + chr7_3:67620129-67620148 None:intergenic 30.0%
!! ATAAAAGAGAGCACTTCTAT+TGG - chr7_3:67620166-67620185 Msa1118840:five_prime_UTR 30.0%
CACCCAAGTTTATATTCTAA+CGG + chr7_3:67620282-67620301 None:intergenic 30.0%
! AACTGAACATGATGATGACT+TGG - chr7_3:67616199-67616218 Msa1118840:three_prime_UTR 35.0%
GTGTTGAAATGTGTTTGTAG+TGG + chr7_3:67616311-67616330 None:intergenic 35.0%
ATCGTAAGTGTAAGAGAAAC+CGG + chr7_3:67616473-67616492 None:intergenic 35.0%
ACAGAATCTGGTAATTCTAC+TGG - chr7_3:67616817-67616836 Msa1118840:intron 35.0%
!!! GTTTTGTTTCGAAGACCAAT+TGG - chr7_3:67616851-67616870 Msa1118840:intron 35.0%
CGTGAGAGTTTCCTATTATA+TGG - chr7_3:67616894-67616913 Msa1118840:intron 35.0%
GAGAGTTTCCTATTATATGG+AGG - chr7_3:67616897-67616916 Msa1118840:intron 35.0%
GAGGAAATGAAGAAGAGAAA+TGG - chr7_3:67616967-67616986 Msa1118840:intron 35.0%
!! AAATGTTGTTGCTTTGGTGA+AGG - chr7_3:67616990-67617009 Msa1118840:intron 35.0%
!!! TGGTTTTGGATAGTTCACAA+GGG - chr7_3:67617193-67617212 Msa1118840:intron 35.0%
CTGAGTTAGATGTTATTGGT+GGG - chr7_3:67617265-67617284 Msa1118840:intron 35.0%
! TGGTTCTATTTGTACTACTC+AGG - chr7_3:67617362-67617381 Msa1118840:intron 35.0%
ACCAAATATGGTCACAATCA+AGG + chr7_3:67617517-67617536 None:intergenic 35.0%
CAAACATATGCATGCATAAC+TGG + chr7_3:67617602-67617621 None:intergenic 35.0%
CAGTTATGCATGCATATGTT+TGG - chr7_3:67617600-67617619 Msa1118840:intron 35.0%
CAACATTTGGGAGCTTATTT+GGG + chr7_3:67617675-67617694 None:intergenic 35.0%
TCAACATTTGGGAGCTTATT+TGG + chr7_3:67617676-67617695 None:intergenic 35.0%
ATCTACTGGCATCAACATTT+GGG + chr7_3:67617687-67617706 None:intergenic 35.0%
TATCTACTGGCATCAACATT+TGG + chr7_3:67617688-67617707 None:intergenic 35.0%
AAAGCTCAAAACAACACGTA+CGG + chr7_3:67617737-67617756 None:intergenic 35.0%
CAGACTCGATATTAAGAATC+AGG + chr7_3:67618067-67618086 None:intergenic 35.0%
!!! AACATGCATAGCTGCTTTTT+TGG - chr7_3:67618628-67618647 Msa1118840:intron 35.0%
!! CTCTATACTTTTTGACACGT+TGG + chr7_3:67618681-67618700 None:intergenic 35.0%
! CAACGTGTCAAAAAGTATAG+AGG - chr7_3:67618679-67618698 Msa1118840:intron 35.0%
CAAAGCTTAAAATTGCCCAA+GGG - chr7_3:67618761-67618780 Msa1118840:intron 35.0%
AAAGCTTAAAATTGCCCAAG+GGG - chr7_3:67618762-67618781 Msa1118840:intron 35.0%
!! AGGCAAGGTTTTCAAGATAT+TGG - chr7_3:67618850-67618869 Msa1118840:intron 35.0%
! TGTTATCCTAACTTTTCCAC+GGG + chr7_3:67619113-67619132 None:intergenic 35.0%
! CTGTTATCCTAACTTTTCCA+CGG + chr7_3:67619114-67619133 None:intergenic 35.0%
GTATGTCTCACTATTCTCAT+GGG + chr7_3:67619249-67619268 None:intergenic 35.0%
TGTATGTCTCACTATTCTCA+TGG + chr7_3:67619250-67619269 None:intergenic 35.0%
!! GTGTCATTTGAACATGCTTT+AGG - chr7_3:67619359-67619378 Msa1118840:CDS 35.0%
! TTGTCATTTAAGCATAACCG+AGG - chr7_3:67619456-67619475 Msa1118840:CDS 35.0%
! TGTCATTTAAGCATAACCGA+GGG - chr7_3:67619457-67619476 Msa1118840:CDS 35.0%
ATGAAAAATAGCACTACCCT+CGG + chr7_3:67619476-67619495 None:intergenic 35.0%
TCTAATTCTTTCCACTGGAA+AGG - chr7_3:67619539-67619558 Msa1118840:CDS 35.0%
CACTGTAATGTAATTGTCGA+TGG - chr7_3:67619654-67619673 Msa1118840:CDS 35.0%
ATGGCTTCTAGCAAATTACA+CGG + chr7_3:67619707-67619726 None:intergenic 35.0%
TTCATATAAACTCCCCAGAT+TGG - chr7_3:67619761-67619780 Msa1118840:CDS 35.0%
! ATCTTTTGCATACCAATCTG+GGG + chr7_3:67619776-67619795 None:intergenic 35.0%
! GATCTTTTGCATACCAATCT+GGG + chr7_3:67619777-67619796 None:intergenic 35.0%
! TGATCTTTTGCATACCAATC+TGG + chr7_3:67619778-67619797 None:intergenic 35.0%
GTAACATTACATTATGGTGG+AGG + chr7_3:67619999-67620018 None:intergenic 35.0%
! TTACGTTATCTGTTTTGTCC+AGG - chr7_3:67620023-67620042 Msa1118840:CDS 35.0%
! ATTGGAGCTCTTCTAAGTTT+TGG - chr7_3:67620184-67620203 Msa1118840:five_prime_UTR 35.0%
! TTGGAGCTCTTCTAAGTTTT+GGG - chr7_3:67620185-67620204 Msa1118840:five_prime_UTR 35.0%
GGTCTTAATTCAGAACTTTG+GGG + chr7_3:67620249-67620268 None:intergenic 35.0%
GGGTCTTAATTCAGAACTTT+GGG + chr7_3:67620250-67620269 None:intergenic 35.0%
TGGGTCTTAATTCAGAACTT+TGG + chr7_3:67620251-67620270 None:intergenic 35.0%
!! CATTTTGGTGACTCAATGCA+TGG + chr7_3:67616234-67616253 None:intergenic 40.0%
!! AGTAGGTTTTTCAACTACGG+TGG + chr7_3:67616364-67616383 None:intergenic 40.0%
GTGAAATCCATAGTGGTTGT+CGG + chr7_3:67616403-67616422 None:intergenic 40.0%
GTCATTTCGATTGGACCAAT+TGG + chr7_3:67616869-67616888 None:intergenic 40.0%
TTGGTCCAATCGAAATGACA+AGG - chr7_3:67616870-67616889 Msa1118840:intron 40.0%
TGGTCCAATCGAAATGACAA+GGG - chr7_3:67616871-67616890 Msa1118840:intron 40.0%
TTTCCTCTTCAATCTTCGCA+AGG + chr7_3:67616954-67616973 None:intergenic 40.0%
! TAAGGAGAGGTTAGAGCATT+TGG - chr7_3:67617149-67617168 Msa1118840:intron 40.0%
! TTAGAGCATTTGGTGAAAGC+TGG - chr7_3:67617159-67617178 Msa1118840:intron 40.0%
!!! GTGGTTTTGGATAGTTCACA+AGG - chr7_3:67617192-67617211 Msa1118840:intron 40.0%
CCACCAATAACATCTAACTC+AGG + chr7_3:67617267-67617286 None:intergenic 40.0%
CCTGAGTTAGATGTTATTGG+TGG - chr7_3:67617264-67617283 Msa1118840:intron 40.0%
GCTGAGAATTTGATTCAAGC+TGG - chr7_3:67617309-67617328 Msa1118840:intron 40.0%
! TTGATTCAAGCTGGTGTTGA+TGG - chr7_3:67617318-67617337 Msa1118840:intron 40.0%
!! TGATTCAAGCTGGTGTTGAT+GGG - chr7_3:67617319-67617338 Msa1118840:intron 40.0%
!! TAGTTTGTTGCATCTGGCTT+TGG - chr7_3:67617455-67617474 Msa1118840:intron 40.0%
!! TGGCTTTGGATTGTTGTTGT+AGG - chr7_3:67617469-67617488 Msa1118840:intron 40.0%
GCCTTGATTGTGACCATATT+TGG - chr7_3:67617513-67617532 Msa1118840:intron 40.0%
! AACAACACGTACGGTTTGTT+TGG + chr7_3:67617728-67617747 None:intergenic 40.0%
TTTGTTGCTACAATAAGCCG+TGG - chr7_3:67617841-67617860 Msa1118840:CDS 40.0%
TTGTTGCTACAATAAGCCGT+GGG - chr7_3:67617842-67617861 Msa1118840:CDS 40.0%
CGAATTCCAGATATTGCTCA+AGG - chr7_3:67618040-67618059 Msa1118840:intron 40.0%
ATATCGAGTCTGTGTTTGAC+AGG - chr7_3:67618075-67618094 Msa1118840:intron 40.0%
TATCGAGTCTGTGTTTGACA+GGG - chr7_3:67618076-67618095 Msa1118840:intron 40.0%
TACCTGATATACATAAGCCC+CGG + chr7_3:67618260-67618279 None:intergenic 40.0%
ATTGTGTATCTTGATGCGTG+TGG - chr7_3:67618402-67618421 Msa1118840:CDS 40.0%
GCAAAGCTTAAAATTGCCCA+AGG - chr7_3:67618760-67618779 Msa1118840:intron 40.0%
CACAGAACCCTTGTCTTTAA+CGG + chr7_3:67618797-67618816 None:intergenic 40.0%
CTTACTGCTTGCATGGTATA+TGG + chr7_3:67618832-67618851 None:intergenic 40.0%
CATATACCATGCAAGCAGTA+AGG - chr7_3:67618830-67618849 Msa1118840:intron 40.0%
ACATGACCTTCTTAGATCCA+GGG - chr7_3:67618894-67618913 Msa1118840:intron 40.0%
TTAACACCCTGGATCTAAGA+AGG + chr7_3:67618903-67618922 None:intergenic 40.0%
! TTCTTAGATCCAGGGTGTTA+AGG - chr7_3:67618902-67618921 Msa1118840:intron 40.0%
! ATGCACATGGCATTTTTCAC+TGG - chr7_3:67619066-67619085 Msa1118840:intron 40.0%
! TTTTCCACGGGCAATACTTA+TGG + chr7_3:67619101-67619120 None:intergenic 40.0%
!! CATTTGAACATGCTTTAGGG+AGG - chr7_3:67619363-67619382 Msa1118840:CDS 40.0%
ATGTAATTGTCGATGGTCCA+AGG - chr7_3:67619661-67619680 Msa1118840:CDS 40.0%
TGTAATTGTCGATGGTCCAA+GGG - chr7_3:67619662-67619681 Msa1118840:CDS 40.0%
! TGGAGCTCTTCTAAGTTTTG+GGG - chr7_3:67620186-67620205 Msa1118840:five_prime_UTR 40.0%
GGTGACTCAATGCATGGAAA+TGG + chr7_3:67616228-67616247 None:intergenic 45.0%
!!! TGTAGTGGATTTTGAGCCGT+TGG + chr7_3:67616296-67616315 None:intergenic 45.0%
!! AGGTTTTTCAACTACGGTGG+CGG + chr7_3:67616361-67616380 None:intergenic 45.0%
GAGAGAAGAGAGAGTGAAGT+AGG + chr7_3:67616381-67616400 None:intergenic 45.0%
!! TGACGTGAAGGAGTGTTGTT+AGG + chr7_3:67616673-67616692 None:intergenic 45.0%
TAACAACACTCCTTCACGTC+AGG - chr7_3:67616672-67616691 Msa1118840:intron 45.0%
! AAAACCGGTTCAGAGAGGAT+AGG + chr7_3:67616733-67616752 None:intergenic 45.0%
TCAGAATCGATTACTGCCGA+AGG + chr7_3:67616763-67616782 None:intergenic 45.0%
CTATTATATGGAGGCTCCTC+CGG - chr7_3:67616906-67616925 Msa1118840:intron 45.0%
TATTATATGGAGGCTCCTCC+GGG - chr7_3:67616907-67616926 Msa1118840:intron 45.0%
TGACCTTGCGAAGATTGAAG+AGG - chr7_3:67616948-67616967 Msa1118840:intron 45.0%
!! TGTTGCTTTGGTGAAGGATG+AGG - chr7_3:67616996-67617015 Msa1118840:intron 45.0%
!! GGTGGATTTGGTGACAAAAG+AGG - chr7_3:67617023-67617042 Msa1118840:intron 45.0%
!! GGATTTGGTGACAAAAGAGG+AGG - chr7_3:67617026-67617045 Msa1118840:intron 45.0%
TGACAAAAGAGGAGGTTGAG+AGG - chr7_3:67617034-67617053 Msa1118840:intron 45.0%
GACAAAAGAGGAGGTTGAGA+GGG - chr7_3:67617035-67617054 Msa1118840:intron 45.0%
! TGGTGTGAATGCTGTGGTTT+TGG - chr7_3:67617179-67617198 Msa1118840:intron 45.0%
!! TGATGGGTTGAGAGTTGGTA+TGG - chr7_3:67617335-67617354 Msa1118840:intron 45.0%
!! GATGGGTTGAGAGTTGGTAT+GGG - chr7_3:67617336-67617355 Msa1118840:intron 45.0%
!! TTGAGAGTTGGTATGGGATC+TGG - chr7_3:67617342-67617361 Msa1118840:intron 45.0%
TACTACTCAGGAAGTTTGCG+CGG - chr7_3:67617374-67617393 Msa1118840:intron 45.0%
TGTTGCTACAATAAGCCGTG+GGG - chr7_3:67617843-67617862 Msa1118840:CDS 45.0%
! ACAGGGAACTGCTGTTTACA+AGG - chr7_3:67618093-67618112 Msa1118840:intron 45.0%
!! GGAGCATCGACTGTTATGAT+GGG - chr7_3:67618205-67618224 Msa1118840:intron 45.0%
! ATGATGGGAAGCTTCTTAGC+TGG - chr7_3:67618220-67618239 Msa1118840:intron 45.0%
ACCTGATATACATAAGCCCC+GGG + chr7_3:67618259-67618278 None:intergenic 45.0%
! CACAAGTTTTCATCAGGGGT+TGG + chr7_3:67618283-67618302 None:intergenic 45.0%
! TTTGAAGCTTGTGCTGTGTG+TGG - chr7_3:67618327-67618346 Msa1118840:CDS 45.0%
TGTATCTTGATGCGTGTGGT+TGG - chr7_3:67618406-67618425 Msa1118840:CDS 45.0%
! TTTTGACACGTTGGCCATTC+TGG + chr7_3:67618672-67618691 None:intergenic 45.0%
TCCCTTGAAGCTATGACTCA+AGG - chr7_3:67618709-67618728 Msa1118840:intron 45.0%
GCCTTGAGTCATAGCTTCAA+GGG + chr7_3:67618713-67618732 None:intergenic 45.0%
TGCCTTGAGTCATAGCTTCA+AGG + chr7_3:67618714-67618733 None:intergenic 45.0%
TGACTCAAGGCAGTGATCAA+AGG - chr7_3:67618722-67618741 Msa1118840:intron 45.0%
! TAAGCTTTGCTGTATCACCG+AGG + chr7_3:67618750-67618769 None:intergenic 45.0%
AAAATTGCCCAAGGGGTTGT+TGG - chr7_3:67618769-67618788 Msa1118840:intron 45.0%
TGTTGGAGCCGTTAAAGACA+AGG - chr7_3:67618786-67618805 Msa1118840:intron 45.0%
GTTGGAGCCGTTAAAGACAA+GGG - chr7_3:67618787-67618806 Msa1118840:intron 45.0%
CACATGACCTTCTTAGATCC+AGG - chr7_3:67618893-67618912 Msa1118840:intron 45.0%
! GTATCCATAAGTATTGCCCG+TGG - chr7_3:67619094-67619113 Msa1118840:intron 45.0%
GTATTGCCCGTGGAAAAGTT+AGG - chr7_3:67619104-67619123 Msa1118840:intron 45.0%
TGTCTCACTATTCTCATGGG+AGG + chr7_3:67619246-67619265 None:intergenic 45.0%
AGGTGAGTGTAACTGATGAC+AGG + chr7_3:67619300-67619319 None:intergenic 45.0%
GTAATTGTCGATGGTCCAAG+GGG - chr7_3:67619663-67619682 Msa1118840:CDS 45.0%
! TGTTTTGTCCAGGTTCGTAC+TGG - chr7_3:67620033-67620052 Msa1118840:CDS 45.0%
! CAGGTTGAAGGAGGAATTCA+TGG - chr7_3:67620063-67620082 Msa1118840:CDS 45.0%
TGAAGGAGGAATTCATGGAC+TGG - chr7_3:67620068-67620087 Msa1118840:CDS 45.0%
CTTCTCTCCGACAACCACTA+TGG - chr7_3:67616393-67616412 Msa1118840:three_prime_UTR 50.0%
CGGAGGAGTGAAATCCATAG+TGG + chr7_3:67616410-67616429 None:intergenic 50.0%
! GCGGAGAAGCTTTTCAACAC+CGG - chr7_3:67616451-67616470 Msa1118840:exon 50.0%
TGTAGTGAGGGAGGAAGATG+AGG + chr7_3:67616498-67616517 None:intergenic 50.0%
AGCGACGAAGGGAGTTGAAA+GGG + chr7_3:67616575-67616594 None:intergenic 50.0%
AAGCGACGAAGGGAGTTGAA+AGG + chr7_3:67616576-67616595 None:intergenic 50.0%
TCCATAGGAGAAGCGACGAA+GGG + chr7_3:67616586-67616605 None:intergenic 50.0%
GATTCGGAGACAGTGTCCAT+AGG + chr7_3:67616601-67616620 None:intergenic 50.0%
CACTGTCTCCGAATCCTCTA+TGG - chr7_3:67616606-67616625 Msa1118840:intron 50.0%
GGCAGAAGCCATAGAGGATT+CGG + chr7_3:67616617-67616636 None:intergenic 50.0%
ATCCTCTATGGCTTCTGCCA+TGG - chr7_3:67616618-67616637 Msa1118840:intron 50.0%
GTTCAGAGAGGATAGGCACA+CGG + chr7_3:67616726-67616745 None:intergenic 50.0%
TGTGCCTATCCTCTCTGAAC+CGG - chr7_3:67616726-67616745 Msa1118840:intron 50.0%
! AGACGAAAACCGGTTCAGAG+AGG + chr7_3:67616738-67616757 None:intergenic 50.0%
!! ACCGGTTTTCGTCTCTCCTT+CGG - chr7_3:67616744-67616763 Msa1118840:intron 50.0%
! CACGCCCTTGTCATTTCGAT+TGG + chr7_3:67616878-67616897 None:intergenic 50.0%
CGGAGGAGCCTCCATATAAT+AGG + chr7_3:67616908-67616927 None:intergenic 50.0%
TTCGCAAGGTCAGAGTTCCA+CGG + chr7_3:67616940-67616959 None:intergenic 50.0%
TGCTTTGGTGAAGGATGAGG+AGG - chr7_3:67616999-67617018 Msa1118840:intron 50.0%
TTTGGTGAAGGATGAGGAGG+TGG - chr7_3:67617002-67617021 Msa1118840:intron 50.0%
!! TATCCGAAGTTGGTGACCAG+AGG - chr7_3:67617066-67617085 Msa1118840:intron 50.0%
GATCCTCTGGTCACCAACTT+CGG + chr7_3:67617072-67617091 None:intergenic 50.0%
!! GAAGTTGGTGACCAGAGGAT+CGG - chr7_3:67617071-67617090 Msa1118840:intron 50.0%
TGGGACGAGGGAACAAGATA+AGG - chr7_3:67617131-67617150 Msa1118840:intron 50.0%
CGAGGGAACAAGATAAGGAG+AGG - chr7_3:67617136-67617155 Msa1118840:intron 50.0%
GAAAGCTGGTGTGAATGCTG+TGG - chr7_3:67617173-67617192 Msa1118840:intron 50.0%
!! GGTGTTGATGGGTTGAGAGT+TGG - chr7_3:67617330-67617349 Msa1118840:intron 50.0%
! CACGTACGGTTTGTTTGGAC+TGG + chr7_3:67617723-67617742 None:intergenic 50.0%
AGAAGAGATTGCTCCACTCC+AGG + chr7_3:67617888-67617907 None:intergenic 50.0%
TCAGGGCCTTGAGCAATATC+TGG + chr7_3:67618049-67618068 None:intergenic 50.0%
GGAGTTCCTGTCATTGCTGA+TGG - chr7_3:67618139-67618158 Msa1118840:intron 50.0%
GTTCCTGTCATTGCTGATGG+TGG - chr7_3:67618142-67618161 Msa1118840:intron 50.0%
ATGCCACCATCAGCAATGAC+AGG + chr7_3:67618148-67618167 None:intergenic 50.0%
! GATGGTGGCATCTCAAACTC+TGG - chr7_3:67618157-67618176 Msa1118840:intron 50.0%
!! GGGAGCATCGACTGTTATGA+TGG - chr7_3:67618204-67618223 Msa1118840:intron 50.0%
CTTCTTAGCTGGTAGTCTCG+AGG - chr7_3:67618231-67618250 Msa1118840:intron 50.0%
TCCCGGGGCTTATGTATATC+AGG - chr7_3:67618255-67618274 Msa1118840:intron 50.0%
!! GGCAGTGATCAAAGGTACCT+CGG - chr7_3:67618730-67618749 Msa1118840:intron 50.0%
ACCATGCAAGCAGTAAGGCA+AGG - chr7_3:67618835-67618854 Msa1118840:intron 50.0%
ACCTTGCCTTACTGCTTGCA+TGG + chr7_3:67618839-67618858 None:intergenic 50.0%
ATGTGCAGACTGCAGAGAGT+TGG + chr7_3:67618878-67618897 None:intergenic 50.0%
! ATCCAGGGTGTTAAGGCTAG+AGG - chr7_3:67618909-67618928 Msa1118840:intron 50.0%
!! TACCTCTAGCCTTAACACCC+TGG + chr7_3:67618914-67618933 None:intergenic 50.0%
GGGTGTTAAGGCTAGAGGTA+TGG - chr7_3:67618914-67618933 Msa1118840:intron 50.0%
GATGAAGACGAGAATCCCCT+TGG + chr7_3:67619681-67619700 None:intergenic 50.0%
ACTCCTCCGCCAATCGAAGA+CGG - chr7_3:67616421-67616440 Msa1118840:three_prime_UTR 55.0%
TAACCGTCTTCGATTGGCGG+AGG + chr7_3:67616427-67616446 None:intergenic 55.0%
GCGTAACCGTCTTCGATTGG+CGG + chr7_3:67616430-67616449 None:intergenic 55.0%
GCCAATCGAAGACGGTTACG+CGG - chr7_3:67616429-67616448 Msa1118840:three_prime_UTR 55.0%
AATCGAAGACGGTTACGCGG+CGG - chr7_3:67616432-67616451 Msa1118840:three_prime_UTR 55.0%
CGAAGTCGATGTAGTGAGGG+AGG + chr7_3:67616507-67616526 None:intergenic 55.0%
CGGCGAAGTCGATGTAGTGA+GGG + chr7_3:67616510-67616529 None:intergenic 55.0%
! GGAGAGGTCGACTTCATCAG+CGG + chr7_3:67616530-67616549 None:intergenic 55.0%
GATGTTACGACTGAGACGGG+AGG + chr7_3:67616551-67616570 None:intergenic 55.0%
GGGGATGTTACGACTGAGAC+GGG + chr7_3:67616554-67616573 None:intergenic 55.0%
GGGGGATGTTACGACTGAGA+CGG + chr7_3:67616555-67616574 None:intergenic 55.0%
CGACGAAGGGAGTTGAAAGG+GGG + chr7_3:67616573-67616592 None:intergenic 55.0%
GCGACGAAGGGAGTTGAAAG+GGG + chr7_3:67616574-67616593 None:intergenic 55.0%
TCCCTTCGTCGCTTCTCCTA+TGG - chr7_3:67616582-67616601 Msa1118840:intron 55.0%
GTCCATAGGAGAAGCGACGA+AGG + chr7_3:67616587-67616606 None:intergenic 55.0%
AACAGCGATACCGCCAAGTG+CGG + chr7_3:67616644-67616663 None:intergenic 55.0%
CAACACTCCTTCACGTCAGG+CGG - chr7_3:67616675-67616694 Msa1118840:intron 55.0%
ACAATAGCCGCCTGACGTGA+AGG + chr7_3:67616685-67616704 None:intergenic 55.0%
GCCGAAGGAGAGACGAAAAC+CGG + chr7_3:67616748-67616767 None:intergenic 55.0%
GAGTTCCACGGTAGAGAACC+CGG + chr7_3:67616928-67616947 None:intergenic 55.0%
!! GGATGAGGAGGTGGTGGATT+TGG - chr7_3:67617011-67617030 Msa1118840:intron 55.0%
GGTGAGAGGCTATCCGAAGT+TGG - chr7_3:67617056-67617075 Msa1118840:intron 55.0%
! TTGGTGACCAGAGGATCGGT+TGG - chr7_3:67617075-67617094 Msa1118840:intron 55.0%
TGGTGACCAGAGGATCGGTT+GGG - chr7_3:67617076-67617095 Msa1118840:intron 55.0%
ACTCAGGAAGTTTGCGCGGT+TGG - chr7_3:67617378-67617397 Msa1118840:intron 55.0%
CTCAGGAAGTTTGCGCGGTT+GGG - chr7_3:67617379-67617398 Msa1118840:intron 55.0%
AATAAGCCGTGGGGCTTGTG+TGG - chr7_3:67617852-67617871 Msa1118840:CDS 55.0%
TTGTGTGGCATACCCTGACC+TGG - chr7_3:67617867-67617886 Msa1118840:CDS 55.0%
GATTGCTCCACTCCAGGTCA+GGG + chr7_3:67617882-67617901 None:intergenic 55.0%
AGATTGCTCCACTCCAGGTC+AGG + chr7_3:67617883-67617902 None:intergenic 55.0%
AACGGCTCCAACAACCCCTT+GGG + chr7_3:67618779-67618798 None:intergenic 55.0%
TAACGGCTCCAACAACCCCT+TGG + chr7_3:67618780-67618799 None:intergenic 55.0%
TGTCCAGGTTCGTACTGGAG+CGG - chr7_3:67620038-67620057 Msa1118840:CDS 55.0%
GCCGCGTAACCGTCTTCGAT+TGG + chr7_3:67616433-67616452 None:intergenic 60.0%
GCGGCGAAGTCGATGTAGTG+AGG + chr7_3:67616511-67616530 None:intergenic 60.0%
TACGACTGAGACGGGAGGAG+AGG + chr7_3:67616546-67616565 None:intergenic 60.0%
GGCCATGGCAGAAGCCATAG+AGG + chr7_3:67616623-67616642 None:intergenic 60.0%
CACGTCAGGCGGCTATTGTC+CGG - chr7_3:67616686-67616705 Msa1118840:intron 60.0%
AGAGAGGATAGGCACACGGC+GGG + chr7_3:67616722-67616741 None:intergenic 60.0%
CAGAGAGGATAGGCACACGG+CGG + chr7_3:67616723-67616742 None:intergenic 60.0%
TTCCACGGTAGAGAACCCGG+AGG + chr7_3:67616925-67616944 None:intergenic 60.0%
GGTGAAGGATGAGGAGGTGG+TGG - chr7_3:67617005-67617024 Msa1118840:intron 60.0%
GAGGAGGTTGAGAGGGTGAG+AGG - chr7_3:67617042-67617061 Msa1118840:intron 60.0%
GGTGACCAGAGGATCGGTTG+GGG - chr7_3:67617077-67617096 Msa1118840:intron 60.0%
GCGGATGGAGAGTGGATGGT+GGG - chr7_3:67617099-67617118 Msa1118840:intron 60.0%
CGGATGGAGAGTGGATGGTG+GGG - chr7_3:67617100-67617119 Msa1118840:intron 60.0%
! GGATGGAGAGTGGATGGTGG+GGG - chr7_3:67617101-67617120 Msa1118840:intron 60.0%
GGTATGCCACACAAGCCCCA+CGG + chr7_3:67617861-67617880 None:intergenic 60.0%
TGGCATACCCTGACCTGGAG+TGG - chr7_3:67617872-67617891 Msa1118840:CDS 60.0%
! ACTGGAGCGGCACAGGTTGA+AGG - chr7_3:67620051-67620070 Msa1118840:CDS 60.0%
GCTTCTGCCATGGCCGCACT+TGG - chr7_3:67616628-67616647 Msa1118840:intron 65.0%
TCTGCCATGGCCGCACTTGG+CGG - chr7_3:67616631-67616650 Msa1118840:intron 65.0%
GATACCGCCAAGTGCGGCCA+TGG + chr7_3:67616638-67616657 None:intergenic 65.0%
GATAGGCACACGGCGGGACT+TGG + chr7_3:67616716-67616735 None:intergenic 65.0%
CTCCTCCGGGTTCTCTACCG+TGG - chr7_3:67616920-67616939 Msa1118840:intron 65.0%
GACCAGAGGATCGGTTGGGG+CGG - chr7_3:67617080-67617099 Msa1118840:intron 65.0%
ATCCGCCCCAACCGATCCTC+TGG + chr7_3:67617085-67617104 None:intergenic 65.0%
AGAGGATCGGTTGGGGCGGA+TGG - chr7_3:67617084-67617103 Msa1118840:intron 65.0%
TGGGGCGGATGGAGAGTGGA+TGG - chr7_3:67617095-67617114 Msa1118840:intron 65.0%
GGCGGATGGAGAGTGGATGG+TGG - chr7_3:67617098-67617117 Msa1118840:intron 65.0%
!! TGGAGAGTGGATGGTGGGGG+CGG - chr7_3:67617104-67617123 Msa1118840:intron 65.0%
!! TGGATGGTGGGGGCGGCTAT+TGG - chr7_3:67617111-67617130 Msa1118840:intron 65.0%
!! GGATGGTGGGGGCGGCTATT+GGG - chr7_3:67617112-67617131 Msa1118840:intron 65.0%
GAAGTTTGCGCGGTTGGGCG+TGG - chr7_3:67617384-67617403 Msa1118840:intron 65.0%
GCTGGTAGTCTCGAGGCTCC+CGG - chr7_3:67618238-67618257 Msa1118840:intron 65.0%
CTGGTAGTCTCGAGGCTCCC+GGG - chr7_3:67618239-67618258 Msa1118840:intron 65.0%
TGGTAGTCTCGAGGCTCCCG+GGG - chr7_3:67618240-67618259 Msa1118840:intron 65.0%
! GTGCCGCTCCAGTACGAACC+TGG + chr7_3:67620044-67620063 None:intergenic 65.0%
GGTTCGTACTGGAGCGGCAC+AGG - chr7_3:67620044-67620063 Msa1118840:CDS 65.0%
! GGAGCGGCACAGGTTGAAGG+AGG - chr7_3:67620054-67620073 Msa1118840:CDS 65.0%
CACGGCGGGACTTGGCAGTC+CGG + chr7_3:67616708-67616727 None:intergenic 70.0%
CGGTTGGGGCGGATGGAGAG+TGG - chr7_3:67617091-67617110 Msa1118840:intron 70.0%
TGGGGGCGGCTATTGGGACG+AGG - chr7_3:67617118-67617137 Msa1118840:intron 70.0%
GGGGGCGGCTATTGGGACGA+GGG - chr7_3:67617119-67617138 Msa1118840:intron 70.0%
TTGCGCGGTTGGGCGTGGTC+AGG - chr7_3:67617389-67617408 Msa1118840:intron 70.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 67616183 67620387 67616183 ID=Msa1118840;Name=Msa1118840
chr7_3 mRNA 67616183 67620387 67616183 ID=Msa1118840-mRNA-1;Parent=Msa1118840;Name=Msa1118840-mRNA-1;_AED=0.01;_eAED=0.01;_QI=229|1|1|1|1|1|4|271|502
chr7_3 exon 67616183 67616525 67616183 ID=Msa1118840-mRNA-1:exon:16695;Parent=Msa1118840-mRNA-1
chr7_3 exon 67617640 67617897 67617640 ID=Msa1118840-mRNA-1:exon:16694;Parent=Msa1118840-mRNA-1
chr7_3 exon 67618294 67618473 67618294 ID=Msa1118840-mRNA-1:exon:16693;Parent=Msa1118840-mRNA-1
chr7_3 exon 67619160 67620387 67619160 ID=Msa1118840-mRNA-1:exon:16692;Parent=Msa1118840-mRNA-1
chr7_3 five_prime_UTR 67620159 67620387 67620159 ID=Msa1118840-mRNA-1:five_prime_utr;Parent=Msa1118840-mRNA-1
chr7_3 CDS 67619160 67620158 67619160 ID=Msa1118840-mRNA-1:cds;Parent=Msa1118840-mRNA-1
chr7_3 CDS 67618294 67618473 67618294 ID=Msa1118840-mRNA-1:cds;Parent=Msa1118840-mRNA-1
chr7_3 CDS 67617640 67617897 67617640 ID=Msa1118840-mRNA-1:cds;Parent=Msa1118840-mRNA-1
chr7_3 CDS 67616454 67616525 67616454 ID=Msa1118840-mRNA-1:cds;Parent=Msa1118840-mRNA-1
chr7_3 three_prime_UTR 67616183 67616453 67616183 ID=Msa1118840-mRNA-1:three_prime_utr;Parent=Msa1118840-mRNA-1
Gene Sequence

>Msa1118840

ATGGATTTCACTCCTCCGCCAATCGAAGACGGTTACGCGGCGGAGAAGCTTTTCAACACCGGTTTCTCTTACACTTACGATGACCTCATCTTCCTCCCTCACTACATCGACTTCGCCGCTGATGAAGTCGACCTCTCCTCCCGTCTCAGTCGTAACATCCCCCTTTCAACTCCCTTCGTCGCTTCTCCTATGGACACTGTCTCCGAATCCTCTATGGCTTCTGCCATGGCCGCACTTGGCGGTATCGCTGTTATTCATCCTAACAACACTCCTTCACGTCAGGCGGCTATTGTCCGGACTGCCAAGTCCCGCCGTGTGCCTATCCTCTCTGAACCGGTTTTCGTCTCTCCTTCGGCAGTAATCGATTCTGAAGACGATTTCGCTGATTCACCTTTTATTTTAGTAACAGAATCTGGTAATTCTACTGGAAAATTTCTCGGTTTTGTTTCGAAGACCAATTGGTCCAATCGAAATGACAAGGGCGTGAGAGTTTCCTATTATATGGAGGCTCCTCCGGGTTCTCTACCGTGGAACTCTGACCTTGCGAAGATTGAAGAGGAAATGAAGAAGAGAAATGGAAATGTTGTTGCTTTGGTGAAGGATGAGGAGGTGGTGGATTTGGTGACAAAAGAGGAGGTTGAGAGGGTGAGAGGCTATCCGAAGTTGGTGACCAGAGGATCGGTTGGGGCGGATGGAGAGTGGATGGTGGGGGCGGCTATTGGGACGAGGGAACAAGATAAGGAGAGGTTAGAGCATTTGGTGAAAGCTGGTGTGAATGCTGTGGTTTTGGATAGTTCACAAGGGAATTCTATTTATCAATTGGAGATGATTAAATATGTGAAGAAGGTTTATCCTGAGTTAGATGTTATTGGTGGGAATGTTGTGACTATGTATCAAGCTGAGAATTTGATTCAAGCTGGTGTTGATGGGTTGAGAGTTGGTATGGGATCTGGTTCTATTTGTACTACTCAGGAAGTTTGCGCGGTTGGGCGTGGTCAGGGAACTGCTGTTTACAAGGTCTCATCCATTGCTTATAAAAGTGGAGTTCCTGTCATTGCTGATGGTGGCATCTCAAACTCTGGTCATATCGTAAAAGCTTTATCGTTGGGAGCATCGACTGTTATGATGGGAAGCTTCTTAGCTGGTAGTCTCGAGGCTCCCGGGGCTTATGTATATCAGAATGGCCAACGTGTCAAAAAGTATAGAGGAATGGGTTCCCTTGAAGCTATGACTCAAGGCAGTGATCAAAGGTACCTCGGTGATACAGCAAAGCTTAAAATTGCCCAAGGGGTTGTTGGAGCCGTTAAAGACAAGGGTTCTGTGTTGAAGTTCATTCCATATACCATGCAAGCAGTAAGGCAAGGTTTTCAAGATATTGGTGCCAACTCTCTGCAGTCTGCACATGACCTTCTTAGATCCAGGGTGTTAAGGCTAGAGGTTCGTACTGGAGCGGCACAGGTTGAAGGAGGAATTCATGGACTGGTTTCATATGAAAAGAAATACTTTTGA
Protein sequence

>Msa1118840

MDFTPPPIEDGYAAEKLFNTGFSYTYDDLIFLPHYIDFAADEVDLSSRLSRNIPLSTPFVASPMDTVSESSMASAMAALGGIAVIHPNNTPSRQAAIVRTAKSRRVPILSEPVFVSPSAVIDSEDDFADSPFILVTESGNSTGKFLGFVSKTNWSNRNDKGVRVSYYMEAPPGSLPWNSDLAKIEEEMKKRNGNVVALVKDEEVVDLVTKEEVERVRGYPKLVTRGSVGADGEWMVGAAIGTREQDKERLEHLVKAGVNAVVLDSSQGNSIYQLEMIKYVKKVYPELDVIGGNVVTMYQAENLIQAGVDGLRVGMGSGSICTTQEVCAVGRGQGTAVYKVSSIAYKSGVPVIADGGISNSGHIVKALSLGASTVMMGSFLAGSLEAPGAYVYQNGQRVKKYRGMGSLEAMTQGSDQRYLGDTAKLKIAQGVVGAVKDKGSVLKFIPYTMQAVRQGFQDIGANSLQSAHDLLRSRVLRLEVRTGAAQVEGGIHGLVSYEKKYF*