Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1119580 | XP_013449475.1 | 96.516 | 287 | 5 | 1 | 1 | 287 | 1 | 282 | 0.0 | 571 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1119580 | sp|O82768|HIS2_ARATH | 75.319 | 235 | 52 | 2 | 48 | 281 | 51 | 280 | 1.90e-128 | 369 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1119580 | A0A072U2X9 | 96.516 | 287 | 5 | 1 | 1 | 287 | 1 | 282 | 0.0 | 571 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0395960 | Msa1119580 | 0.800968 | 1.123408e-48 | -8.615850e-47 |
| Msa1031140 | Msa1119580 | 0.807778 | 4.280728e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1119580 | MtrunA17_Chr7g0252441 | 96.516 | 287 | 5 | 1 | 1 | 287 | 1 | 282 | 0.0 | 571 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1119580 | AT1G31860.1 | 75.319 | 235 | 52 | 2 | 48 | 281 | 51 | 280 | 1.93e-129 | 369 |
| Msa1119580 | AT1G31860.2 | 73.659 | 205 | 48 | 2 | 78 | 281 | 1 | 200 | 1.64e-108 | 313 |
| Msa1119580 | AT1G31860.3 | 76.023 | 171 | 35 | 2 | 48 | 217 | 51 | 216 | 9.39e-93 | 274 |
Find 102 sgRNAs with CRISPR-Local
Find 283 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCATTGTTCCACCGATTTC+TGG | 0.137364 | 7_3:+68538677 | None:intergenic |
| ATTTGTCCAACTTAGATATT+TGG | 0.150858 | 7_3:-68538488 | Msa1119580:three_prime_UTR |
| CACTGTTGGACGGTGTAAAA+TGG | 0.157529 | 7_3:-68539819 | Msa1119580:CDS |
| CAAGCAACATATTTAGTTTC+TGG | 0.177202 | 7_3:-68538630 | Msa1119580:three_prime_UTR |
| AGAAATAATTATCAAGAAAT+TGG | 0.210846 | 7_3:-68538308 | Msa1119580:three_prime_UTR |
| ATAGTTATTATAATATTATT+TGG | 0.219017 | 7_3:+68538347 | None:intergenic |
| ATGGACATTGATGAAATTAT+TGG | 0.223699 | 7_3:+68539633 | None:intergenic |
| ATTATAATAACTATTTATTA+TGG | 0.245921 | 7_3:-68538338 | Msa1119580:three_prime_UTR |
| TTCATCGCTGTTATTCATTC+AGG | 0.258625 | 7_3:-68542568 | Msa1119580:intron |
| ATGAAGGGAAGATGTGAAAT+TGG | 0.271843 | 7_3:+68542586 | None:intergenic |
| GTTGGTCCTGTAACCGCATC+TGG | 0.276016 | 7_3:+68541160 | None:intergenic |
| AAAACGAGAGATTGCACTTC+TGG | 0.284409 | 7_3:+68541198 | None:intergenic |
| ATTATTGGAGGTCTCTCCTT+TGG | 0.330042 | 7_3:+68539648 | None:intergenic |
| GCTATCCCAGATGCGGTTAC+AGG | 0.343137 | 7_3:-68541166 | Msa1119580:CDS |
| ACGAGTTGTTACCATGAATA+GGG | 0.355971 | 7_3:-68538586 | Msa1119580:three_prime_UTR |
| AAATTCTTGTGATGATAGTA+TGG | 0.359955 | 7_3:+68538403 | None:intergenic |
| TGAAGGGAAGATGTGAAATT+GGG | 0.365325 | 7_3:+68542587 | None:intergenic |
| GTGTGGCAGGTAGGCCCATC+AGG | 0.375048 | 7_3:+68539444 | None:intergenic |
| CTACTACCTCTGCCTTGCGC+TGG | 0.376948 | 7_3:+68539216 | None:intergenic |
| ACAGGTTGAAGGAAACAAAT+TGG | 0.394156 | 7_3:-68539276 | Msa1119580:intron |
| AAGAAAACGGAAAGCCTTCA+TGG | 0.412346 | 7_3:-68539193 | Msa1119580:CDS |
| TCATTGTTCCACCGATTTCT+GGG | 0.414624 | 7_3:+68538678 | None:intergenic |
| TGAGGAAGAAGAGTTGAGTT+GGG | 0.419348 | 7_3:+68542614 | None:intergenic |
| GCTAGAGTTACCCCTATTCA+TGG | 0.425615 | 7_3:+68538575 | None:intergenic |
| GTTGGGTTAGAAAGTGAAGA+TGG | 0.429235 | 7_3:+68542631 | None:intergenic |
| TGTGGCCTTCCGAGAAGATA+TGG | 0.431591 | 7_3:+68539702 | None:intergenic |
| AACAACTCGTCTTGTACATC+TGG | 0.433413 | 7_3:+68538599 | None:intergenic |
| TAAGAGGCGTTTCAATTCAA+TGG | 0.438518 | 7_3:-68541261 | Msa1119580:exon |
| AGTTGCTGTGCTCTAAAATC+AGG | 0.447400 | 7_3:-68539145 | Msa1119580:intron |
| GTGAGGAAGAAGAGTTGAGT+TGG | 0.449702 | 7_3:+68542613 | None:intergenic |
| GACGAGTTGTTACCATGAAT+AGG | 0.450522 | 7_3:-68538587 | Msa1119580:three_prime_UTR |
| TACTACCTCTGCCTTGCGCT+GGG | 0.453376 | 7_3:+68539217 | None:intergenic |
| TGTTTCTGCCCCTGTGTGGC+AGG | 0.457775 | 7_3:+68539431 | None:intergenic |
| CATGGTTCTGTTGGCACTAA+AGG | 0.463951 | 7_3:-68538782 | Msa1119580:CDS |
| TGAATGAATAACAGCGATGA+AGG | 0.472323 | 7_3:+68542570 | None:intergenic |
| TGATATCTGCTACAGGTTGA+AGG | 0.473281 | 7_3:-68539287 | Msa1119580:intron |
| TGGCTACAACCATATCTTCT+CGG | 0.473692 | 7_3:-68539711 | Msa1119580:CDS |
| CGAGTTCCAAATATCTAAGT+TGG | 0.475665 | 7_3:+68538482 | None:intergenic |
| AAGTCGCACAACCCAGAAAT+CGG | 0.479737 | 7_3:-68538689 | Msa1119580:CDS |
| TCTGCCCCTGTGTGGCAGGT+AGG | 0.494555 | 7_3:+68539435 | None:intergenic |
| TCTTTCAACAAGTCAAAGAC+TGG | 0.497321 | 7_3:+68539396 | None:intergenic |
| CAACTTAGATAATATACCTT+GGG | 0.500220 | 7_3:-68539470 | Msa1119580:intron |
| CTATCATGCCATGGTTCTGT+TGG | 0.502158 | 7_3:-68538791 | Msa1119580:CDS |
| GGTGTAAAATGGGATGATAA+AGG | 0.507922 | 7_3:-68539808 | Msa1119580:CDS |
| ACTGTTGGACGGTGTAAAAT+GGG | 0.513858 | 7_3:-68539818 | Msa1119580:CDS |
| AAGTGAAGATGGAGAAAGAG+AGG | 0.513906 | 7_3:+68542642 | None:intergenic |
| GACATTGATGAAATTATTGG+AGG | 0.523136 | 7_3:+68539636 | None:intergenic |
| GTCGGTCACGGTCATCGTTG+TGG | 0.523921 | 7_3:-68539672 | Msa1119580:CDS |
| TGACTTGTTGAAAGAAGAAG+AGG | 0.531116 | 7_3:-68539388 | Msa1119580:intron |
| TCTTTCTACTTGCAGAGAAG+AGG | 0.537580 | 7_3:-68538887 | Msa1119580:intron |
| ATTGCACTTCTGGAAACCTC+TGG | 0.541828 | 7_3:+68541208 | None:intergenic |
| AAAATGGGATGATAAAGGTT+TGG | 0.543571 | 7_3:-68539803 | Msa1119580:CDS |
| AATAACCGCTTTGTCCATGA+AGG | 0.545592 | 7_3:+68539179 | None:intergenic |
| GATGGGCCTACCTGCCACAC+AGG | 0.546338 | 7_3:-68539441 | Msa1119580:CDS |
| GCAGAGGTAGTAGAAGAAAA+CGG | 0.548101 | 7_3:-68539206 | Msa1119580:CDS |
| ACAACTTAGATAATATACCT+TGG | 0.549394 | 7_3:-68539471 | Msa1119580:intron |
| ATGGGCCTACCTGCCACACA+GGG | 0.551373 | 7_3:-68539440 | Msa1119580:CDS |
| CGGTCATCGTTGTGGACCAA+AGG | 0.552026 | 7_3:-68539664 | Msa1119580:CDS |
| CACAATCAAGAAAGACATCA+TGG | 0.552848 | 7_3:+68539614 | None:intergenic |
| ATATACCTTGGGAAACCTGA+TGG | 0.557467 | 7_3:-68539459 | Msa1119580:CDS |
| GCATCTGGGATAGCCATGGC+TGG | 0.559498 | 7_3:+68541175 | None:intergenic |
| GTCACGCACTGCTTCAGAGA+TGG | 0.565116 | 7_3:-68538824 | Msa1119580:CDS |
| TTTACAGTTGCAAAGTCAAG+TGG | 0.565123 | 7_3:-68541287 | Msa1119580:intron |
| AATATCCCAGCGCAAGGCAG+AGG | 0.568929 | 7_3:-68539222 | Msa1119580:CDS |
| AGAAGATATGGTTGTAGCCA+CGG | 0.570030 | 7_3:+68539714 | None:intergenic |
| TTGGTCCTGTAACCGCATCT+GGG | 0.575216 | 7_3:+68541161 | None:intergenic |
| TGATGTACTCTATCATGCCA+TGG | 0.578899 | 7_3:-68538800 | Msa1119580:CDS |
| TAAATTGACCACATTACAAG+AGG | 0.582351 | 7_3:+68538456 | None:intergenic |
| CAAAGTCAAGTGGCTCTAAG+AGG | 0.585169 | 7_3:-68541277 | Msa1119580:five_prime_UTR |
| CACATGCTTCAATCCGCCAG+AGG | 0.586849 | 7_3:-68541224 | Msa1119580:CDS |
| TATACCTTGGGAAACCTGAT+GGG | 0.588739 | 7_3:-68539458 | Msa1119580:CDS |
| GTCAACAATATCCCAGCGCA+AGG | 0.606963 | 7_3:-68539228 | Msa1119580:CDS |
| GGAAGGCCACATTCTATAGT+CGG | 0.610737 | 7_3:-68539690 | Msa1119580:CDS |
| GATGTGAAATTGGGGTTGTG+AGG | 0.613118 | 7_3:+68542596 | None:intergenic |
| CAGGTAGACTCACTGTTGGA+CGG | 0.614205 | 7_3:-68539829 | Msa1119580:CDS |
| GCATAGAAGCAAAAGCTAAG+TGG | 0.619127 | 7_3:+68541138 | None:intergenic |
| TACAACCATATCTTCTCGGA+AGG | 0.619181 | 7_3:-68539707 | Msa1119580:CDS |
| CGAGTTGTTACCATGAATAG+GGG | 0.620499 | 7_3:-68538585 | Msa1119580:three_prime_UTR |
| AACCGCATCTGGGATAGCCA+TGG | 0.622178 | 7_3:+68541171 | None:intergenic |
| GAATGAATAACAGCGATGAA+GGG | 0.625399 | 7_3:+68542571 | None:intergenic |
| GCACTTCTGGAAACCTCTGG+CGG | 0.626654 | 7_3:+68541211 | None:intergenic |
| TATGCACACATCTGACCCCA+AGG | 0.631404 | 7_3:-68541120 | Msa1119580:intron |
| CTTTGCAAATAGAGAAGCCG+TGG | 0.632765 | 7_3:-68539731 | Msa1119580:CDS |
| AGAAGCAAAAGCTAAGTGGT+TGG | 0.638559 | 7_3:+68541142 | None:intergenic |
| ACTCGTATCCTCTTGTAATG+TGG | 0.638626 | 7_3:-68538464 | Msa1119580:three_prime_UTR |
| CCACATTCTATAGTCGGTCA+CGG | 0.639280 | 7_3:-68539684 | Msa1119580:CDS |
| TAGGCCCATCAGGTTTCCCA+AGG | 0.643905 | 7_3:+68539454 | None:intergenic |
| TGAAACACTAGAGAATAATG+AGG | 0.646491 | 7_3:-68538851 | Msa1119580:CDS |
| ATAGCTCAGAATGTTGACAC+AGG | 0.647706 | 7_3:-68539772 | Msa1119580:CDS |
| AGCCATGGCTATCCCAGATG+CGG | 0.651262 | 7_3:-68541173 | Msa1119580:CDS |
| TTGTCAGGTAGACTCACTGT+TGG | 0.652198 | 7_3:-68539833 | Msa1119580:intron |
| TAGCTCAGAATGTTGACACA+GGG | 0.653091 | 7_3:-68539771 | Msa1119580:CDS |
| CTTTAGTGCCAACAGAACCA+TGG | 0.657861 | 7_3:+68538783 | None:intergenic |
| GAAGGGAAGATGTGAAATTG+GGG | 0.659208 | 7_3:+68542588 | None:intergenic |
| ACAGGGGCAATACTGATGCA+AGG | 0.659548 | 7_3:-68539754 | Msa1119580:CDS |
| AGCATGTTTCTGCCCCTGTG+TGG | 0.667419 | 7_3:+68539427 | None:intergenic |
| GGATGATAAAGGTTTGGCTG+TGG | 0.671785 | 7_3:-68539797 | Msa1119580:CDS |
| TCGCACAACCCAGAAATCGG+TGG | 0.673876 | 7_3:-68538686 | Msa1119580:CDS |
| CCGTGACCGACTATAGAATG+TGG | 0.681377 | 7_3:+68539684 | None:intergenic |
| GGATTGAAGCATGTGAACGT+TGG | 0.704472 | 7_3:+68541232 | None:intergenic |
| GAAAGCCTTCATGGACAAAG+CGG | 0.708284 | 7_3:-68539184 | Msa1119580:CDS |
| AGCTCAGAATGTTGACACAG+GGG | 0.720988 | 7_3:-68539770 | Msa1119580:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GTTTAAAAAATAAATAAATG+AGG | - | chr7_3:68540250-68540269 | Msa1119580:intron | 10.0% |
| !! | AAAATAAAATTAATGTTTCA+TGG | + | chr7_3:68541952-68541971 | None:intergenic | 10.0% |
| !!! | ATTGGTTAAAATATTTTAAA+TGG | - | chr7_3:68542648-68542667 | Msa1119580:five_prime_UTR | 10.0% |
| !! | GAATAATTTCATCAAATATA+TGG | + | chr7_3:68538495-68538514 | None:intergenic | 15.0% |
| !! | TATTTGATGAAATTATTCAA+CGG | - | chr7_3:68538497-68538516 | Msa1119580:three_prime_UTR | 15.0% |
| !!! | TTTTTTAATTAAGTCTGAAT+TGG | - | chr7_3:68538536-68538555 | Msa1119580:three_prime_UTR | 15.0% |
| !! | AATAAGAAGATATAAACAAT+GGG | - | chr7_3:68539070-68539089 | Msa1119580:intron | 15.0% |
| !!! | AAATGTTTTTTTATAACGTA+AGG | - | chr7_3:68539489-68539508 | Msa1119580:intron | 15.0% |
| !! | TAAAAATGTAAAAGAATTTG+AGG | + | chr7_3:68540919-68540938 | None:intergenic | 15.0% |
| !! | TATTATTAACAGCATATTTA+CGG | + | chr7_3:68540948-68540967 | None:intergenic | 15.0% |
| !! | AGAAATAATTATCAAGAAAT+TGG | - | chr7_3:68542630-68542649 | Msa1119580:five_prime_UTR | 15.0% |
| !! | TAAAAAATGAACATTTGACA+TGG | - | chr7_3:68538693-68538712 | Msa1119580:CDS | 20.0% |
| !! | TTATAACAATGTTGTAATTG+CGG | - | chr7_3:68538725-68538744 | Msa1119580:CDS | 20.0% |
| !!! | TAACAACATTGGTTTATATA+AGG | - | chr7_3:68538852-68538871 | Msa1119580:CDS | 20.0% |
| !!! | TTTATATAAGGCATTCTTAT+TGG | - | chr7_3:68538864-68538883 | Msa1119580:CDS | 20.0% |
| !!! | ATAACATAAGCAATTTTTGT+CGG | - | chr7_3:68538993-68539012 | Msa1119580:intron | 20.0% |
| !! | GAATAAGAAGATATAAACAA+TGG | - | chr7_3:68539069-68539088 | Msa1119580:intron | 20.0% |
| !!! | ACTAGTTTCTTTCTTATATT+TGG | - | chr7_3:68539862-68539881 | Msa1119580:intron | 20.0% |
| !! | AAAATATCAACTGAAAATGA+AGG | + | chr7_3:68539977-68539996 | None:intergenic | 20.0% |
| !! | AATCAAACTAAACAAAACAA+AGG | - | chr7_3:68540085-68540104 | Msa1119580:intron | 20.0% |
| !! | ATCAAACTAAACAAAACAAA+GGG | - | chr7_3:68540086-68540105 | Msa1119580:intron | 20.0% |
| !! | AATTGGACAATAAAAAAAGA+TGG | + | chr7_3:68540113-68540132 | None:intergenic | 20.0% |
| !! | AATAACAATATTTCTCAGAT+AGG | + | chr7_3:68540346-68540365 | None:intergenic | 20.0% |
| !!! | TGTTATTTTATAGATAGACA+AGG | - | chr7_3:68540359-68540378 | Msa1119580:intron | 20.0% |
| !! | GTTATTATCACAATTTCAAT+AGG | + | chr7_3:68540829-68540848 | None:intergenic | 20.0% |
| !! | TTTGTATTTCTTAGTTCAAA+TGG | - | chr7_3:68540864-68540883 | Msa1119580:intron | 20.0% |
| !! | TTGTATTTCTTAGTTCAAAT+GGG | - | chr7_3:68540865-68540884 | Msa1119580:intron | 20.0% |
| !! | TATTATCTAAGTTGTTATCA+AGG | + | chr7_3:68541462-68541481 | None:intergenic | 20.0% |
| !! | AAAGTTTATGCATTTTGTTG+AGG | - | chr7_3:68538653-68538672 | Msa1119580:three_prime_UTR | 25.0% |
| !! | GTACTTCACAATATTTTGTA+CGG | - | chr7_3:68538813-68538832 | Msa1119580:CDS | 25.0% |
| ! | AAACCAATGTTGTTAAATAG+TGG | + | chr7_3:68538847-68538866 | None:intergenic | 25.0% |
| ! | GACAAAAATTGCTTATGTTA+TGG | + | chr7_3:68538994-68539013 | None:intergenic | 25.0% |
| ! | ATATGGTAAAAAAGTTCACA+GGG | + | chr7_3:68539558-68539577 | None:intergenic | 25.0% |
| !!! | TGTGAACTTTTTTACCATAT+GGG | - | chr7_3:68539558-68539577 | Msa1119580:intron | 25.0% |
| ! | CTTTCTTATATTTGGACAAT+TGG | - | chr7_3:68539870-68539889 | Msa1119580:intron | 25.0% |
| !! | TTAAATGACAGTTTTCTTGT+TGG | - | chr7_3:68540171-68540190 | Msa1119580:intron | 25.0% |
| ! | AAATAAATAAATGAGGAACC+TGG | - | chr7_3:68540257-68540276 | Msa1119580:intron | 25.0% |
| ! | TACAATTATATTCATGAACC+AGG | + | chr7_3:68540278-68540297 | None:intergenic | 25.0% |
| ! | CAGTCAAATTGACAATAAAA+TGG | + | chr7_3:68540517-68540536 | None:intergenic | 25.0% |
| !!! | CTCTTGCTTTGAAAAATTAT+TGG | - | chr7_3:68540569-68540588 | Msa1119580:intron | 25.0% |
| ! | AAGTCATGCTTATTTGTAAA+TGG | - | chr7_3:68540613-68540632 | Msa1119580:intron | 25.0% |
| ! | TTATCAGTATCATGATGAAT+GGG | + | chr7_3:68540677-68540696 | None:intergenic | 25.0% |
| ! | ATTATCAGTATCATGATGAA+TGG | + | chr7_3:68540678-68540697 | None:intergenic | 25.0% |
| ! | TTGAACTAAGAAATACAAAC+TGG | + | chr7_3:68540863-68540882 | None:intergenic | 25.0% |
| ! | TGTATTTCTTAGTTCAAATG+GGG | - | chr7_3:68540866-68540885 | Msa1119580:intron | 25.0% |
| !! | TTTTAATGTGAAACAGAACA+AGG | + | chr7_3:68541075-68541094 | None:intergenic | 25.0% |
| !! | TAAAAAGCTAAACTTTTGTC+AGG | - | chr7_3:68541090-68541109 | Msa1119580:intron | 25.0% |
| ! | ATGGACATTGATGAAATTAT+TGG | + | chr7_3:68541308-68541327 | None:intergenic | 25.0% |
| ! | AAAAAGTCAATGCAGAAAAA+CGG | + | chr7_3:68541374-68541393 | None:intergenic | 25.0% |
| !! | TTGTTATTCTTTGTATCATG+TGG | - | chr7_3:68541413-68541432 | Msa1119580:intron | 25.0% |
| ! | ACAACTTAGATAATATACCT+TGG | - | chr7_3:68541467-68541486 | Msa1119580:intron | 25.0% |
| ! | CAACTTAGATAATATACCTT+GGG | - | chr7_3:68541468-68541487 | Msa1119580:intron | 25.0% |
| ! | TAGCTTCAATCAATTAAAAC+AGG | - | chr7_3:68541574-68541593 | Msa1119580:intron | 25.0% |
| !! | CATGAAGAATATGATTTTTG+GGG | + | chr7_3:68541870-68541889 | None:intergenic | 25.0% |
| !! | CCATGAAGAATATGATTTTT+GGG | + | chr7_3:68541871-68541890 | None:intergenic | 25.0% |
| !! | ACCATGAAGAATATGATTTT+TGG | + | chr7_3:68541872-68541891 | None:intergenic | 25.0% |
| !!! | GGAAATGCTTTTTTAAACAA+AGG | + | chr7_3:68541931-68541950 | None:intergenic | 25.0% |
| ! | TGACAAAGAGAATAAAAACT+CGG | + | chr7_3:68542419-68542438 | None:intergenic | 25.0% |
| ! | ATTTGTCCAACTTAGATATT+TGG | - | chr7_3:68542450-68542469 | Msa1119580:intron | 25.0% |
| ! | AAATTCTTGTGATGATAGTA+TGG | + | chr7_3:68542538-68542557 | None:intergenic | 25.0% |
| ! | CTTATTCAACAAAAATCACA+TGG | + | chr7_3:68542569-68542588 | None:intergenic | 25.0% |
| AACGCGAATTTGAAAACAAA+AGG | + | chr7_3:68538454-68538473 | None:intergenic | 30.0% | |
| AAATGCTAATGTCATTAAGC+TGG | - | chr7_3:68538566-68538585 | Msa1119580:three_prime_UTR | 30.0% | |
| AACTCTTTCAGTAATGTAGA+GGG | + | chr7_3:68538916-68538935 | None:intergenic | 30.0% | |
| TTAGTTATGGTTAGAGAGAT+AGG | - | chr7_3:68539047-68539066 | Msa1119580:intron | 30.0% | |
| TAATTGATTGAGAGAGAGAT+AGG | - | chr7_3:68539296-68539315 | Msa1119580:intron | 30.0% | |
| ACAATCTCATGATTTGATGT+TGG | - | chr7_3:68539374-68539393 | Msa1119580:intron | 30.0% | |
| ! | TTTTTATAACGTAAGGCCTA+TGG | - | chr7_3:68539496-68539515 | Msa1119580:intron | 30.0% |
| ! | TTTTATAACGTAAGGCCTAT+GGG | - | chr7_3:68539497-68539516 | Msa1119580:intron | 30.0% |
| CATATGGTAAAAAAGTTCAC+AGG | + | chr7_3:68539559-68539578 | None:intergenic | 30.0% | |
| !!! | CTGTGAACTTTTTTACCATA+TGG | - | chr7_3:68539557-68539576 | Msa1119580:intron | 30.0% |
| AACTAGTTAGATAGTTGACA+TGG | + | chr7_3:68539849-68539868 | None:intergenic | 30.0% | |
| TTAGCATGTTATTCAGACAA+CGG | - | chr7_3:68539903-68539922 | Msa1119580:intron | 30.0% | |
| AAACCGTACTATATATGTCA+AGG | + | chr7_3:68540212-68540231 | None:intergenic | 30.0% | |
| ! | CTATTTCTTCCAGATGTATT+AGG | - | chr7_3:68540431-68540450 | Msa1119580:intron | 30.0% |
| TCCTATTGTAAGTTATGTAG+TGG | - | chr7_3:68540463-68540482 | Msa1119580:intron | 30.0% | |
| ! | ATTTGACTGTGTAGAAGTAT+CGG | - | chr7_3:68540528-68540547 | Msa1119580:intron | 30.0% |
| TATCAGTATCATGATGAATG+GGG | + | chr7_3:68540676-68540695 | None:intergenic | 30.0% | |
| ! | TCATCATGATACTGATAATG+TGG | - | chr7_3:68540679-68540698 | Msa1119580:intron | 30.0% |
| AAAATGGGATGATAAAGGTT+TGG | - | chr7_3:68541135-68541154 | Msa1119580:CDS | 30.0% | |
| GACATTGATGAAATTATTGG+AGG | + | chr7_3:68541305-68541324 | None:intergenic | 30.0% | |
| CAAACCAATTTAAATGTTGC+TGG | + | chr7_3:68541633-68541652 | None:intergenic | 30.0% | |
| CCCAAAAATCATATTCTTCA+TGG | - | chr7_3:68541868-68541887 | Msa1119580:intron | 30.0% | |
| AGATGATTGAAGAAAACAGA+TGG | - | chr7_3:68541980-68541999 | Msa1119580:intron | 30.0% | |
| TGAAACACTAGAGAATAATG+AGG | - | chr7_3:68542087-68542106 | Msa1119580:intron | 30.0% | |
| ! | CAAGCAACATATTTAGTTTC+TGG | - | chr7_3:68542308-68542327 | Msa1119580:intron | 30.0% |
| ACAAAGAGAATAAAAACTCG+GGG | + | chr7_3:68542417-68542436 | None:intergenic | 30.0% | |
| GACAAAGAGAATAAAAACTC+GGG | + | chr7_3:68542418-68542437 | None:intergenic | 30.0% | |
| TAAATTGACCACATTACAAG+AGG | + | chr7_3:68542485-68542504 | None:intergenic | 30.0% | |
| TGAAGGGAAGATGTGAAATT+GGG | + | chr7_3:68538354-68538373 | None:intergenic | 35.0% | |
| ATGAAGGGAAGATGTGAAAT+TGG | + | chr7_3:68538355-68538374 | None:intergenic | 35.0% | |
| GAATGAATAACAGCGATGAA+GGG | + | chr7_3:68538370-68538389 | None:intergenic | 35.0% | |
| TGAATGAATAACAGCGATGA+AGG | + | chr7_3:68538371-68538390 | None:intergenic | 35.0% | |
| TTCATCGCTGTTATTCATTC+AGG | - | chr7_3:68538370-68538389 | Msa1119580:three_prime_UTR | 35.0% | |
| ACAAAAGGAAGTGATGCAAT+TGG | + | chr7_3:68538439-68538458 | None:intergenic | 35.0% | |
| TCATTAAGCTGGATTCTTCT+TGG | - | chr7_3:68538577-68538596 | Msa1119580:three_prime_UTR | 35.0% | |
| ATCGCAGAAAATAGCAGTTT+AGG | - | chr7_3:68538748-68538767 | Msa1119580:CDS | 35.0% | |
| ! | ATATTGTGAAGTACCAGCTA+TGG | + | chr7_3:68538807-68538826 | None:intergenic | 35.0% |
| TCGCCACTATTTAACAACAT+TGG | - | chr7_3:68538841-68538860 | Msa1119580:CDS | 35.0% | |
| ACTCTTTCAGTAATGTAGAG+GGG | + | chr7_3:68538915-68538934 | None:intergenic | 35.0% | |
| CAACTCTTTCAGTAATGTAG+AGG | + | chr7_3:68538917-68538936 | None:intergenic | 35.0% | |
| CCATAACTAACTAACACTGT+GGG | + | chr7_3:68539037-68539056 | None:intergenic | 35.0% | |
| ACCATAACTAACTAACACTG+TGG | + | chr7_3:68539038-68539057 | None:intergenic | 35.0% | |
| ACCAAAGCTCTTTGATCTAA+GGG | + | chr7_3:68539148-68539167 | None:intergenic | 35.0% | |
| !!! | ACTTGGGTGACATAGTTTTT+TGG | - | chr7_3:68539200-68539219 | Msa1119580:CDS | 35.0% |
| AGTTTGATTGAACCATAGAG+TGG | - | chr7_3:68539448-68539467 | Msa1119580:CDS | 35.0% | |
| GTTTGATTGAACCATAGAGT+GGG | - | chr7_3:68539449-68539468 | Msa1119580:CDS | 35.0% | |
| TCAATAAACGGTGTGCATTA+AGG | + | chr7_3:68539527-68539546 | None:intergenic | 35.0% | |
| AGGGACAAAAGGTCAATAAA+CGG | + | chr7_3:68539539-68539558 | None:intergenic | 35.0% | |
| AAAAAGTTCACAGGGACAAA+AGG | + | chr7_3:68539550-68539569 | None:intergenic | 35.0% | |
| TTTACAGTTGCAAAGTCAAG+TGG | - | chr7_3:68539651-68539670 | Msa1119580:CDS | 35.0% | |
| !! | TAAGAGGCGTTTCAATTCAA+TGG | - | chr7_3:68539677-68539696 | Msa1119580:CDS | 35.0% |
| AGTTGACATGGAAATACCTT+GGG | + | chr7_3:68539837-68539856 | None:intergenic | 35.0% | |
| TAGTTGACATGGAAATACCT+TGG | + | chr7_3:68539838-68539857 | None:intergenic | 35.0% | |
| AGAGCCCTTGAGAAAATAAA+GGG | - | chr7_3:68539932-68539951 | Msa1119580:intron | 35.0% | |
| !!! | ACGTCCCTTTATTTTCTCAA+GGG | + | chr7_3:68539939-68539958 | None:intergenic | 35.0% |
| TAAGGAGTTGTCACTGTAAT+TGG | + | chr7_3:68540130-68540149 | None:intergenic | 35.0% | |
| ATTACAGTGACAACTCCTTA+CGG | - | chr7_3:68540130-68540149 | Msa1119580:intron | 35.0% | |
| CGTCCTTGACATATATAGTA+CGG | - | chr7_3:68540206-68540225 | Msa1119580:intron | 35.0% | |
| AATCCTAGACCTAATACATC+TGG | + | chr7_3:68540443-68540462 | None:intergenic | 35.0% | |
| GCCACTACATAACTTACAAT+AGG | + | chr7_3:68540467-68540486 | None:intergenic | 35.0% | |
| !! | TTTGACTGTGTAGAAGTATC+GGG | - | chr7_3:68540529-68540548 | Msa1119580:intron | 35.0% |
| TAACAACTAAAACAGCACCA+AGG | + | chr7_3:68540801-68540820 | None:intergenic | 35.0% | |
| CTTGATGCCACAAAACTAAA+TGG | + | chr7_3:68540895-68540914 | None:intergenic | 35.0% | |
| TGATTGCTTATGAAATGCCA+TGG | - | chr7_3:68540997-68541016 | Msa1119580:intron | 35.0% | |
| GAATGTAACAACAAATGCCA+TGG | + | chr7_3:68541017-68541036 | None:intergenic | 35.0% | |
| ! | GTTACATTCCTTCTCTCTTT+TGG | - | chr7_3:68541028-68541047 | Msa1119580:intron | 35.0% |
| AAAAGACACCAAAAGAGAGA+AGG | + | chr7_3:68541039-68541058 | None:intergenic | 35.0% | |
| GGTGTAAAATGGGATGATAA+AGG | - | chr7_3:68541130-68541149 | Msa1119580:CDS | 35.0% | |
| CACAATCAAGAAAGACATCA+TGG | + | chr7_3:68541327-68541346 | None:intergenic | 35.0% | |
| ! | CAAGAGCTTTTACAGAATCA+CGG | + | chr7_3:68541351-68541370 | None:intergenic | 35.0% |
| TCTTTCAACAAGTCAAAGAC+TGG | + | chr7_3:68541545-68541564 | None:intergenic | 35.0% | |
| !! | TGACTTGTTGAAAGAAGAAG+AGG | - | chr7_3:68541550-68541569 | Msa1119580:intron | 35.0% |
| AAGGCCAGCAACATTTAAAT+TGG | - | chr7_3:68541626-68541645 | Msa1119580:intron | 35.0% | |
| !! | ATTGGTTTGATATCTGCTAC+AGG | - | chr7_3:68541644-68541663 | Msa1119580:intron | 35.0% |
| ! | ACAGGTTGAAGGAAACAAAT+TGG | - | chr7_3:68541662-68541681 | Msa1119580:intron | 35.0% |
| !!! | GATTTTTGGGGTGGAAAAAA+GGG | + | chr7_3:68541858-68541877 | None:intergenic | 35.0% |
| !!! | TGATTTTTGGGGTGGAAAAA+AGG | + | chr7_3:68541859-68541878 | None:intergenic | 35.0% |
| !! | GAAGAATATGATTTTTGGGG+TGG | + | chr7_3:68541867-68541886 | None:intergenic | 35.0% |
| AAGGCAACTTTATAGCAACA+AGG | + | chr7_3:68541912-68541931 | None:intergenic | 35.0% | |
| ! | CAAAGTAGAAGAAGTTTTGC+AGG | - | chr7_3:68542183-68542202 | Msa1119580:intron | 35.0% |
| ! | ATTTTCCAAGTCTGGTATTG+AGG | - | chr7_3:68542219-68542238 | Msa1119580:intron | 35.0% |
| ACGAGTTGTTACCATGAATA+GGG | - | chr7_3:68542352-68542371 | Msa1119580:intron | 35.0% | |
| CGAGTTCCAAATATCTAAGT+TGG | + | chr7_3:68542459-68542478 | None:intergenic | 35.0% | |
| AAGTGAAGATGGAGAAAGAG+AGG | + | chr7_3:68538299-68538318 | None:intergenic | 40.0% | |
| ! | GTTGGGTTAGAAAGTGAAGA+TGG | + | chr7_3:68538310-68538329 | None:intergenic | 40.0% |
| TGAGGAAGAAGAGTTGAGTT+GGG | + | chr7_3:68538327-68538346 | None:intergenic | 40.0% | |
| GAAGGGAAGATGTGAAATTG+GGG | + | chr7_3:68538353-68538372 | None:intergenic | 40.0% | |
| AATATATGGCGTGCAAGTTG+TGG | + | chr7_3:68538481-68538500 | None:intergenic | 40.0% | |
| TGTTGAGGACAACTATTGTC+AGG | - | chr7_3:68538668-68538687 | Msa1119580:exon | 40.0% | |
| CTCTTTCAGTAATGTAGAGG+GGG | + | chr7_3:68538914-68538933 | None:intergenic | 40.0% | |
| TTTGTCGGCATCATACTGTT+TGG | - | chr7_3:68539008-68539027 | Msa1119580:intron | 40.0% | |
| CCCACAGTGTTAGTTAGTTA+TGG | - | chr7_3:68539034-68539053 | Msa1119580:intron | 40.0% | |
| TCCCTTAGATCAAAGAGCTT+TGG | - | chr7_3:68539144-68539163 | Msa1119580:intron | 40.0% | |
| GACCAAAGCTCTTTGATCTA+AGG | + | chr7_3:68539149-68539168 | None:intergenic | 40.0% | |
| ! | TGTAGATAGCCGATTTCACT+TGG | - | chr7_3:68539183-68539202 | Msa1119580:CDS | 40.0% |
| ! | GTAGATAGCCGATTTCACTT+GGG | - | chr7_3:68539184-68539203 | Msa1119580:CDS | 40.0% |
| CTATGTCACCCAAGTGAAAT+CGG | + | chr7_3:68539195-68539214 | None:intergenic | 40.0% | |
| ! | CACTTAGGTGACATAGCTTT+TGG | + | chr7_3:68539332-68539351 | None:intergenic | 40.0% |
| ! | ATATGGGCTACTGTCAAGAA+GGG | - | chr7_3:68539574-68539593 | Msa1119580:intron | 40.0% |
| AAAACGAGAGATTGCACTTC+TGG | + | chr7_3:68539743-68539762 | None:intergenic | 40.0% | |
| AGAAGCAAAAGCTAAGTGGT+TGG | + | chr7_3:68539799-68539818 | None:intergenic | 40.0% | |
| GCATAGAAGCAAAAGCTAAG+TGG | + | chr7_3:68539803-68539822 | None:intergenic | 40.0% | |
| GTTGACATGGAAATACCTTG+GGG | + | chr7_3:68539836-68539855 | None:intergenic | 40.0% | |
| ! | ATTTTCTCAAGGGCTCTCAT+TGG | + | chr7_3:68539929-68539948 | None:intergenic | 40.0% |
| GAGAGCCCTTGAGAAAATAA+AGG | - | chr7_3:68539931-68539950 | Msa1119580:intron | 40.0% | |
| !!! | CACGTCCCTTTATTTTCTCA+AGG | + | chr7_3:68539940-68539959 | None:intergenic | 40.0% |
| TGAGAAAATAAAGGGACGTG+TGG | - | chr7_3:68539940-68539959 | Msa1119580:intron | 40.0% | |
| AACTCCTTACGGTGACATTT+GGG | - | chr7_3:68540141-68540160 | Msa1119580:intron | 40.0% | |
| AGATAGGAACGTCTATAAGC+AGG | + | chr7_3:68540330-68540349 | None:intergenic | 40.0% | |
| ACACCAAAGCATGCTAACAT+AGG | - | chr7_3:68540390-68540409 | Msa1119580:intron | 40.0% | |
| CACCAAAGCATGCTAACATA+GGG | - | chr7_3:68540391-68540410 | Msa1119580:intron | 40.0% | |
| ACCAAAGCATGCTAACATAG+GGG | - | chr7_3:68540392-68540411 | Msa1119580:intron | 40.0% | |
| CTTCCAGATGTATTAGGTCT+AGG | - | chr7_3:68540437-68540456 | Msa1119580:intron | 40.0% | |
| AAGGCTCAGAAGATACTAGA+AGG | + | chr7_3:68540782-68540801 | None:intergenic | 40.0% | |
| TTCTAGTATCTTCTGAGCCT+TGG | - | chr7_3:68540781-68540800 | Msa1119580:intron | 40.0% | |
| ATACAAACTGGACTTGCATG+AGG | + | chr7_3:68540851-68540870 | None:intergenic | 40.0% | |
| ACTGTTGGACGGTGTAAAAT+GGG | - | chr7_3:68541120-68541139 | Msa1119580:intron | 40.0% | |
| ATAGCTCAGAATGTTGACAC+AGG | - | chr7_3:68541166-68541185 | Msa1119580:CDS | 40.0% | |
| TAGCTCAGAATGTTGACACA+GGG | - | chr7_3:68541167-68541186 | Msa1119580:CDS | 40.0% | |
| AGAAGATATGGTTGTAGCCA+CGG | + | chr7_3:68541227-68541246 | None:intergenic | 40.0% | |
| TGGCTACAACCATATCTTCT+CGG | - | chr7_3:68541227-68541246 | Msa1119580:CDS | 40.0% | |
| TACAACCATATCTTCTCGGA+AGG | - | chr7_3:68541231-68541250 | Msa1119580:CDS | 40.0% | |
| ATTATTGGAGGTCTCTCCTT+TGG | + | chr7_3:68541293-68541312 | None:intergenic | 40.0% | |
| ATATACCTTGGGAAACCTGA+TGG | - | chr7_3:68541479-68541498 | Msa1119580:intron | 40.0% | |
| TATACCTTGGGAAACCTGAT+GGG | - | chr7_3:68541480-68541499 | Msa1119580:intron | 40.0% | |
| ! | TCCTGTTTTCCTGTAGAGAA+AGG | - | chr7_3:68541607-68541626 | Msa1119580:intron | 40.0% |
| ! | TGATATCTGCTACAGGTTGA+AGG | - | chr7_3:68541651-68541670 | Msa1119580:intron | 40.0% |
| GCAGAGGTAGTAGAAGAAAA+CGG | - | chr7_3:68541732-68541751 | Msa1119580:intron | 40.0% | |
| AAGAAAACGGAAAGCCTTCA+TGG | - | chr7_3:68541745-68541764 | Msa1119580:intron | 40.0% | |
| AATAACCGCTTTGTCCATGA+AGG | + | chr7_3:68541762-68541781 | None:intergenic | 40.0% | |
| !! | AGTTGCTGTGCTCTAAAATC+AGG | - | chr7_3:68541793-68541812 | Msa1119580:intron | 40.0% |
| !! | CTGTGCTCTAAAATCAGGTT+GGG | - | chr7_3:68541798-68541817 | Msa1119580:intron | 40.0% |
| TCTTTCTACTTGCAGAGAAG+AGG | - | chr7_3:68542051-68542070 | Msa1119580:intron | 40.0% | |
| TGATGTACTCTATCATGCCA+TGG | - | chr7_3:68542138-68542157 | Msa1119580:intron | 40.0% | |
| ! | AAGAAGTTTTGCAGGTTCTG+AGG | - | chr7_3:68542191-68542210 | Msa1119580:intron | 40.0% |
| ! | CTTTTCCTCAATACCAGACT+TGG | + | chr7_3:68542227-68542246 | None:intergenic | 40.0% |
| !! | TCATTGTTCCACCGATTTCT+GGG | + | chr7_3:68542263-68542282 | None:intergenic | 40.0% |
| !! | TTCATTGTTCCACCGATTTC+TGG | + | chr7_3:68542264-68542283 | None:intergenic | 40.0% |
| AACAACTCGTCTTGTACATC+TGG | + | chr7_3:68542342-68542361 | None:intergenic | 40.0% | |
| GACGAGTTGTTACCATGAAT+AGG | - | chr7_3:68542351-68542370 | Msa1119580:intron | 40.0% | |
| CGAGTTGTTACCATGAATAG+GGG | - | chr7_3:68542353-68542372 | Msa1119580:intron | 40.0% | |
| ACTCGTATCCTCTTGTAATG+TGG | - | chr7_3:68542474-68542493 | Msa1119580:intron | 40.0% | |
| GTGAGGAAGAAGAGTTGAGT+TGG | + | chr7_3:68538328-68538347 | None:intergenic | 45.0% | |
| GATGTGAAATTGGGGTTGTG+AGG | + | chr7_3:68538345-68538364 | None:intergenic | 45.0% | |
| GCTATAGCACTGTTGTGTAG+CGG | + | chr7_3:68538780-68538799 | None:intergenic | 45.0% | |
| ! | TTGTGAAGTACCAGCTATGG+TGG | + | chr7_3:68538804-68538823 | None:intergenic | 45.0% |
| ! | ATTGAACCATAGAGTGGGCT+AGG | - | chr7_3:68539454-68539473 | Msa1119580:CDS | 45.0% |
| TAAACGGTGTGCATTAAGGC+TGG | + | chr7_3:68539523-68539542 | None:intergenic | 45.0% | |
| CTTCTTGACAGTAGCCCATA+TGG | + | chr7_3:68539575-68539594 | None:intergenic | 45.0% | |
| ! | CATATGGGCTACTGTCAAGA+AGG | - | chr7_3:68539573-68539592 | Msa1119580:intron | 45.0% |
| !! | CAAAGTCAAGTGGCTCTAAG+AGG | - | chr7_3:68539661-68539680 | Msa1119580:CDS | 45.0% |
| GGATTGAAGCATGTGAACGT+TGG | + | chr7_3:68539709-68539728 | None:intergenic | 45.0% | |
| ! | ATTGCACTTCTGGAAACCTC+TGG | + | chr7_3:68539733-68539752 | None:intergenic | 45.0% |
| ! | AATCTCTCGTTTTCCAGCCA+TGG | - | chr7_3:68539750-68539769 | Msa1119580:CDS | 45.0% |
| CAACTCCTTACGGTGACATT+TGG | - | chr7_3:68540140-68540159 | Msa1119580:intron | 45.0% | |
| AACGTCTATAAGCAGGATGG+TGG | + | chr7_3:68540323-68540342 | None:intergenic | 45.0% | |
| AGGAACGTCTATAAGCAGGA+TGG | + | chr7_3:68540326-68540345 | None:intergenic | 45.0% | |
| TCCCCTATGTTAGCATGCTT+TGG | + | chr7_3:68540396-68540415 | None:intergenic | 45.0% | |
| !!! | GGGGCAACCATTTAGTTTTG+TGG | - | chr7_3:68540885-68540904 | Msa1119580:intron | 45.0% |
| TTGTCAGGTAGACTCACTGT+TGG | - | chr7_3:68541105-68541124 | Msa1119580:intron | 45.0% | |
| CACTGTTGGACGGTGTAAAA+TGG | - | chr7_3:68541119-68541138 | Msa1119580:intron | 45.0% | |
| GGATGATAAAGGTTTGGCTG+TGG | - | chr7_3:68541141-68541160 | Msa1119580:CDS | 45.0% | |
| AGCTCAGAATGTTGACACAG+GGG | - | chr7_3:68541168-68541187 | Msa1119580:CDS | 45.0% | |
| CTTTGCAAATAGAGAAGCCG+TGG | - | chr7_3:68541207-68541226 | Msa1119580:CDS | 45.0% | |
| GGAAGGCCACATTCTATAGT+CGG | - | chr7_3:68541248-68541267 | Msa1119580:exon | 45.0% | |
| CCACATTCTATAGTCGGTCA+CGG | - | chr7_3:68541254-68541273 | Msa1119580:exon | 45.0% | |
| GCCTTTCTCTACAGGAAAAC+AGG | + | chr7_3:68541611-68541630 | None:intergenic | 45.0% | |
| GAAAGCCTTCATGGACAAAG+CGG | - | chr7_3:68541754-68541773 | Msa1119580:intron | 45.0% | |
| !! | GCTGTGCTCTAAAATCAGGT+TGG | - | chr7_3:68541797-68541816 | Msa1119580:intron | 45.0% |
| ! | CTATCATGCCATGGTTCTGT+TGG | - | chr7_3:68542147-68542166 | Msa1119580:intron | 45.0% |
| CTTTAGTGCCAACAGAACCA+TGG | + | chr7_3:68542158-68542177 | None:intergenic | 45.0% | |
| ! | CATGGTTCTGTTGGCACTAA+AGG | - | chr7_3:68542156-68542175 | Msa1119580:intron | 45.0% |
| AAGTCGCACAACCCAGAAAT+CGG | - | chr7_3:68542249-68542268 | Msa1119580:intron | 45.0% | |
| GCTAGAGTTACCCCTATTCA+TGG | + | chr7_3:68542366-68542385 | None:intergenic | 45.0% | |
| !!! | TATAAAAAAACATTTTAAAT+GGG | + | chr7_3:68539484-68539503 | None:intergenic | 5.0% |
| !!! | TTATAAAAAAACATTTTAAA+TGG | + | chr7_3:68539485-68539504 | None:intergenic | 5.0% |
| !! | ATAGTTATTATAATATTATT+TGG | + | chr7_3:68542594-68542613 | None:intergenic | 5.0% |
| !! | ATTATAATAACTATTTATTA+TGG | - | chr7_3:68542600-68542619 | Msa1119580:five_prime_UTR | 5.0% |
| ! | ATGGGAGTGAAAGTGCAGCA+AGG | - | chr7_3:68539088-68539107 | Msa1119580:intron | 50.0% |
| ! | TGGGAGTGAAAGTGCAGCAA+GGG | - | chr7_3:68539089-68539108 | Msa1119580:intron | 50.0% |
| ! | TGTCACCTAAGTGCTACTCG+TGG | - | chr7_3:68539339-68539358 | Msa1119580:intron | 50.0% |
| GCTATCCACGAGTAGCACTT+AGG | + | chr7_3:68539347-68539366 | None:intergenic | 50.0% | |
| TTGGTCCTGTAACCGCATCT+GGG | + | chr7_3:68539780-68539799 | None:intergenic | 50.0% | |
| TATGCACACATCTGACCCCA+AGG | - | chr7_3:68539818-68539837 | Msa1119580:CDS | 50.0% | |
| CAAGCCCAAATGTCACCGTA+AGG | + | chr7_3:68540148-68540167 | None:intergenic | 50.0% | |
| !! | GATGGTGGAGGTCACATGTT+AGG | + | chr7_3:68540308-68540327 | None:intergenic | 50.0% |
| ! | GTCTATAAGCAGGATGGTGG+AGG | + | chr7_3:68540320-68540339 | None:intergenic | 50.0% |
| CAGGTAGACTCACTGTTGGA+CGG | - | chr7_3:68541109-68541128 | Msa1119580:intron | 50.0% | |
| ACAGGGGCAATACTGATGCA+AGG | - | chr7_3:68541184-68541203 | Msa1119580:CDS | 50.0% | |
| TGTGGCCTTCCGAGAAGATA+TGG | + | chr7_3:68541239-68541258 | None:intergenic | 50.0% | |
| CCGTGACCGACTATAGAATG+TGG | + | chr7_3:68541257-68541276 | None:intergenic | 50.0% | |
| !! | TGTTGCTGGCCTTTCTCTAC+AGG | + | chr7_3:68541619-68541638 | None:intergenic | 50.0% |
| GTCAACAATATCCCAGCGCA+AGG | - | chr7_3:68541710-68541729 | Msa1119580:intron | 50.0% | |
| ! | AGGCAGCGATTTTCCAAGTC+TGG | - | chr7_3:68542211-68542230 | Msa1119580:intron | 50.0% |
| TGCTATAGCGCCACCATAGC+TGG | - | chr7_3:68538791-68538810 | Msa1119580:CDS | 55.0% | |
| ! | GAAAGTGCAGCAAGGGCAAC+TGG | - | chr7_3:68539096-68539115 | Msa1119580:intron | 55.0% |
| GGATTGCCTAGCCCACTCTA+TGG | + | chr7_3:68539463-68539482 | None:intergenic | 55.0% | |
| ! | GTGCATTAAGGCTGGCCCAT+AGG | + | chr7_3:68539515-68539534 | None:intergenic | 55.0% |
| TGGGCTACTGTCAAGAAGGG+TGG | - | chr7_3:68539577-68539596 | Msa1119580:intron | 55.0% | |
| GGGTGGCTCAGCTCATATTG+AGG | - | chr7_3:68539594-68539613 | Msa1119580:CDS | 55.0% | |
| CACATGCTTCAATCCGCCAG+AGG | - | chr7_3:68539714-68539733 | Msa1119580:CDS | 55.0% | |
| ! | GCACTTCTGGAAACCTCTGG+CGG | + | chr7_3:68539730-68539749 | None:intergenic | 55.0% |
| AGCCATGGCTATCCCAGATG+CGG | - | chr7_3:68539765-68539784 | Msa1119580:CDS | 55.0% | |
| ! | AACCGCATCTGGGATAGCCA+TGG | + | chr7_3:68539770-68539789 | None:intergenic | 55.0% |
| GCTATCCCAGATGCGGTTAC+AGG | - | chr7_3:68539772-68539791 | Msa1119580:CDS | 55.0% | |
| GTTGGTCCTGTAACCGCATC+TGG | + | chr7_3:68539781-68539800 | None:intergenic | 55.0% | |
| CGGTCATCGTTGTGGACCAA+AGG | - | chr7_3:68541274-68541293 | Msa1119580:five_prime_UTR | 55.0% | |
| TAGGCCCATCAGGTTTCCCA+AGG | + | chr7_3:68541487-68541506 | None:intergenic | 55.0% | |
| ! | AGCATGTTTCTGCCCCTGTG+TGG | + | chr7_3:68541514-68541533 | None:intergenic | 55.0% |
| AATATCCCAGCGCAAGGCAG+AGG | - | chr7_3:68541716-68541735 | Msa1119580:intron | 55.0% | |
| TACTACCTCTGCCTTGCGCT+GGG | + | chr7_3:68541724-68541743 | None:intergenic | 55.0% | |
| GTCACGCACTGCTTCAGAGA+TGG | - | chr7_3:68542114-68542133 | Msa1119580:intron | 55.0% | |
| TCGCACAACCCAGAAATCGG+TGG | - | chr7_3:68542252-68542271 | Msa1119580:intron | 55.0% | |
| ! | GCATCTGGGATAGCCATGGC+TGG | + | chr7_3:68539766-68539785 | None:intergenic | 60.0% |
| GTCGGTCACGGTCATCGTTG+TGG | - | chr7_3:68541266-68541285 | Msa1119580:five_prime_UTR | 60.0% | |
| ATGGGCCTACCTGCCACACA+GGG | - | chr7_3:68541498-68541517 | Msa1119580:intron | 60.0% | |
| ! | TGTTTCTGCCCCTGTGTGGC+AGG | + | chr7_3:68541510-68541529 | None:intergenic | 60.0% |
| CTACTACCTCTGCCTTGCGC+TGG | + | chr7_3:68541725-68541744 | None:intergenic | 60.0% | |
| GTGTGGCAGGTAGGCCCATC+AGG | + | chr7_3:68541497-68541516 | None:intergenic | 65.0% | |
| GATGGGCCTACCTGCCACAC+AGG | - | chr7_3:68541497-68541516 | Msa1119580:intron | 65.0% | |
| TGGGCCTACCTGCCACACAG+GGG | - | chr7_3:68541499-68541518 | Msa1119580:intron | 65.0% | |
| TCTGCCCCTGTGTGGCAGGT+AGG | + | chr7_3:68541506-68541525 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_3 | gene | 68538278 | 68542682 | 68538278 | ID=Msa1119580;Name=Msa1119580 |
| chr7_3 | mRNA | 68538278 | 68542682 | 68538278 | ID=Msa1119580-mRNA-1;Parent=Msa1119580;Name=Msa1119580-mRNA-1;_AED=0.07;_eAED=0.07;_QI=152|0.8|0.83|1|0.8|0.66|6|400|288 |
| chr7_3 | exon | 68538278 | 68538894 | 68538278 | ID=Msa1119580-mRNA-1:exon:17219;Parent=Msa1119580-mRNA-1 |
| chr7_3 | exon | 68539146 | 68539294 | 68539146 | ID=Msa1119580-mRNA-1:exon:17218;Parent=Msa1119580-mRNA-1 |
| chr7_3 | exon | 68539389 | 68539484 | 68539389 | ID=Msa1119580-mRNA-1:exon:17217;Parent=Msa1119580-mRNA-1 |
| chr7_3 | exon | 68539588 | 68539848 | 68539588 | ID=Msa1119580-mRNA-1:exon:17216;Parent=Msa1119580-mRNA-1 |
| chr7_3 | exon | 68541121 | 68541302 | 68541121 | ID=Msa1119580-mRNA-1:exon:17215;Parent=Msa1119580-mRNA-1 |
| chr7_3 | exon | 68542569 | 68542682 | 68542569 | ID=Msa1119580-mRNA-1:exon:17214;Parent=Msa1119580-mRNA-1 |
| chr7_3 | five_prime_UTR | 68542569 | 68542682 | 68542569 | ID=Msa1119580-mRNA-1:five_prime_utr;Parent=Msa1119580-mRNA-1 |
| chr7_3 | five_prime_UTR | 68541265 | 68541302 | 68541265 | ID=Msa1119580-mRNA-1:five_prime_utr;Parent=Msa1119580-mRNA-1 |
| chr7_3 | CDS | 68541121 | 68541264 | 68541121 | ID=Msa1119580-mRNA-1:cds;Parent=Msa1119580-mRNA-1 |
| chr7_3 | CDS | 68539588 | 68539848 | 68539588 | ID=Msa1119580-mRNA-1:cds;Parent=Msa1119580-mRNA-1 |
| chr7_3 | CDS | 68539389 | 68539484 | 68539389 | ID=Msa1119580-mRNA-1:cds;Parent=Msa1119580-mRNA-1 |
| chr7_3 | CDS | 68539146 | 68539294 | 68539146 | ID=Msa1119580-mRNA-1:cds;Parent=Msa1119580-mRNA-1 |
| chr7_3 | CDS | 68538678 | 68538894 | 68538678 | ID=Msa1119580-mRNA-1:cds;Parent=Msa1119580-mRNA-1 |
| chr7_3 | three_prime_UTR | 68538278 | 68538677 | 68538278 | ID=Msa1119580-mRNA-1:three_prime_utr;Parent=Msa1119580-mRNA-1 |
| Gene Sequence |
| Protein sequence |
