AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1121610

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1121610 MtrunA17_Chr7g0249621 96.552 696 13 4 1 692 1 689 0.0 1386
Msa1121610 MtrunA17_Chr4g0032631 53.140 414 121 10 103 509 51 398 5.19e-130 395
Msa1121610 MtrunA17_Chr2g0328971 65.763 295 73 3 162 455 92 359 2.26e-127 387
Msa1121610 MtrunA17_Chr8g0343851 50.108 463 177 11 5 447 3 431 7.36e-124 380
Msa1121610 MtrunA17_Chr4g0072291 87.310 197 21 2 254 447 149 344 1.20e-121 372
Msa1121610 MtrunA17_Chr3g0135161 68.000 275 68 6 192 460 247 507 1.18e-116 364
Msa1121610 MtrunA17_Chr1g0152161 52.099 405 135 9 65 460 158 512 1.70e-114 358
Msa1121610 MtrunA17_Chr4g0054351 75.234 214 48 2 253 463 299 510 2.20e-106 337
Msa1121610 MtrunA17_Chr5g0412151 81.463 205 34 2 248 449 208 411 2.48e-106 333
Msa1121610 MtrunA17_Chr5g0400871 76.263 198 44 1 260 454 245 442 5.56e-104 327
Msa1121610 MtrunA17_Chr4g0073521 65.979 194 60 2 235 428 24 211 3.03e-84 270
Msa1121610 MtrunA17_Chr6g0452911 59.624 213 74 2 226 428 25 235 5.00e-79 257
Msa1121610 MtrunA17_Chr7g0216601 69.231 169 49 1 263 428 64 232 1.03e-77 254
Msa1121610 MtrunA17_Chr8g0355191 67.630 173 56 0 263 435 54 226 3.18e-76 251
Msa1121610 MtrunA17_Chr8g0367311 74.510 153 38 1 301 453 22 173 7.21e-75 241
Msa1121610 MtrunA17_Chr4g0002011 67.039 179 53 2 253 428 28 203 1.90e-71 235
Msa1121610 MtrunA17_Chr8g0355181 68.072 166 53 0 263 428 55 220 8.34e-70 233
Msa1121610 MtrunA17_Chr8g0362541 60.914 197 63 1 246 428 51 247 5.18e-69 231
Msa1121610 MtrunA17_Chr2g0305821 62.319 138 48 2 236 373 23 156 3.19e-45 158
Msa1121610 MtrunA17_Chr7g0257361 61.832 131 42 2 262 389 55 180 1.28e-39 151
Msa1121610 MtrunA17_Chr4g0053181 52.121 165 65 4 268 429 177 330 2.55e-38 149
Msa1121610 MtrunA17_Chr5g0401891 51.445 173 70 4 268 437 153 314 2.84e-38 149
Msa1121610 MtrunA17_Chr7g0263581 43.719 199 96 4 268 458 140 330 5.99e-38 147
Msa1121610 MtrunA17_Chr4g0030191 45.556 180 82 5 268 444 132 298 2.13e-35 140
Msa1121610 MtrunA17_Chr2g0325911 45.455 165 61 5 268 429 135 273 1.27e-28 119
Msa1121610 MtrunA17_Chr2g0305831 74.576 59 15 0 370 428 1 59 3.27e-24 101
Msa1121610 MtrunA17_Chr3g0126151 43.158 95 53 1 312 406 47 140 1.84e-20 88.2
Msa1121610 MtrunA17_Chr8g0367321 53.165 79 27 2 224 302 125 193 4.96e-20 89.0
Msa1121610 MtrunA17_Chr1g0170761 39.024 123 61 4 264 383 134 245 1.20e-12 70.1
Msa1121610 MtrunA17_Chr5g0432821 44.304 79 43 1 357 435 114 191 6.19e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1121610 AT5G17430.1 52.344 512 153 17 1 504 1 429 3.05e-141 426
Msa1121610 AT5G17430.2 64.809 341 73 7 167 504 71 367 1.39e-134 406
Msa1121610 AT1G51190.1 60.920 348 103 8 112 455 64 382 8.83e-129 393
Msa1121610 AT3G20840.1 72.015 268 56 4 192 455 121 373 4.96e-128 391
Msa1121610 AT5G57390.2 79.018 224 35 3 223 443 49 263 7.16e-121 368
Msa1121610 AT5G57390.1 79.018 224 35 3 223 443 167 381 1.03e-119 369
Msa1121610 AT1G72570.1 57.012 328 106 7 140 446 92 405 2.16e-113 348
Msa1121610 AT4G37750.1 52.020 396 120 10 98 447 95 466 1.51e-109 343
Msa1121610 AT5G10510.2 85.641 195 27 1 255 449 218 411 5.99e-108 338
Msa1121610 AT5G10510.7 84.343 198 27 2 255 449 218 414 9.53e-106 332
Msa1121610 AT5G10510.5 84.343 198 27 2 255 449 218 414 9.53e-106 332
Msa1121610 AT5G10510.1 84.343 198 27 2 255 449 241 437 1.40e-105 333
Msa1121610 AT5G10510.6 84.343 198 27 2 255 449 256 452 1.76e-105 333
Msa1121610 AT5G10510.4 84.343 198 27 2 255 449 256 452 1.76e-105 333
Msa1121610 AT5G65510.4 80.102 196 35 2 255 447 161 355 4.39e-102 319
Msa1121610 AT5G65510.2 80.102 196 35 2 255 447 219 413 8.90e-102 321
Msa1121610 AT5G65510.1 80.102 196 35 2 255 447 219 413 8.90e-102 321
Msa1121610 AT5G10510.3 76.147 218 28 2 255 449 256 472 3.54e-101 322
Msa1121610 AT5G65510.3 84.932 146 19 1 255 397 161 306 1.06e-86 275
Msa1121610 AT3G54320.3 63.736 182 62 2 263 441 61 241 7.54e-67 226
Msa1121610 AT3G54320.1 63.736 182 62 2 263 441 61 241 9.58e-67 226
Msa1121610 AT1G79700.2 69.822 169 48 1 263 428 48 216 2.48e-63 213
Msa1121610 AT1G16060.1 63.077 195 63 3 237 428 34 222 5.81e-63 213
Msa1121610 AT1G79700.1 65.680 169 45 2 263 428 48 206 1.05e-55 192
Msa1121610 AT3G54320.4 69.531 128 39 0 301 428 36 163 1.33e-48 175
Msa1121610 AT3G54320.5 69.531 128 39 0 301 428 36 163 1.33e-48 175
Msa1121610 AT1G79700.3 70.312 128 38 0 301 428 13 140 1.98e-44 159
Msa1121610 AT1G79700.4 70.312 128 38 0 301 428 7 134 2.00e-44 159
Msa1121610 AT1G16060.3 66.418 134 45 0 295 428 19 152 8.98e-43 156
Msa1121610 AT4G36920.1 48.990 198 86 5 247 440 110 296 2.60e-39 150
Msa1121610 AT4G36920.2 48.990 198 86 5 247 440 110 296 2.60e-39 150
Msa1121610 AT2G41710.1 60.606 132 44 2 260 388 63 189 5.27e-39 149
Msa1121610 AT2G41710.4 60.606 132 44 2 260 388 63 189 8.89e-39 150
Msa1121610 AT2G41710.2 58.394 137 44 3 260 388 63 194 9.27e-37 143
Msa1121610 AT2G28550.3 49.390 164 69 4 268 428 154 306 6.25e-36 142
Msa1121610 AT5G67180.2 47.701 174 77 4 268 438 97 259 8.43e-36 137
Msa1121610 AT5G67180.1 47.701 174 77 4 268 438 97 259 3.58e-35 137
Msa1121610 AT5G67180.3 46.512 172 84 3 268 439 97 260 5.75e-35 134
Msa1121610 AT2G41710.3 47.904 167 44 3 260 388 63 224 1.35e-32 132
Msa1121610 AT1G16060.2 71.591 88 25 0 341 428 1 88 1.41e-31 122
Msa1121610 AT1G16060.4 71.591 88 25 0 341 428 1 88 1.41e-31 122
Msa1121610 AT1G16060.6 71.591 88 25 0 341 428 1 88 1.41e-31 122
Msa1121610 AT1G16060.5 71.591 88 25 0 341 428 1 88 1.41e-31 122
Msa1121610 AT3G54320.2 63.366 101 36 1 341 441 1 100 9.34e-31 122
Msa1121610 AT2G28550.1 45.122 164 61 5 268 428 154 291 5.53e-28 118
Msa1121610 AT2G28550.4 47.143 140 60 4 268 404 154 282 5.79e-28 115
Msa1121610 AT5G67180.4 44.366 142 71 3 268 409 97 230 6.02e-26 107
Msa1121610 AT2G28550.2 46.825 126 53 4 268 390 154 268 1.36e-23 101
Msa1121610 AT2G28550.6 46.825 126 53 4 268 390 154 268 1.36e-23 101
Msa1121610 AT2G39250.2 41.071 112 53 3 268 376 109 210 3.17e-21 93.6
Msa1121610 AT2G28550.5 45.312 128 54 2 301 428 14 125 3.36e-21 94.7
Msa1121610 AT2G39250.1 41.071 112 53 3 268 376 109 210 7.34e-21 94.7
Msa1121610 AT5G60120.6 38.509 161 70 6 264 421 157 291 3.66e-17 85.5
Msa1121610 AT5G60120.1 38.509 161 70 6 264 421 157 291 3.82e-17 85.5
Msa1121610 AT5G60120.2 38.509 161 70 6 264 421 157 291 5.43e-17 85.1
Msa1121610 AT5G60120.4 43.411 129 59 4 264 389 157 274 6.47e-17 84.0
Msa1121610 AT5G60120.3 43.411 129 59 4 264 389 157 274 6.47e-17 84.0
Msa1121610 AT5G60120.5 43.411 129 59 4 264 389 157 274 6.47e-17 84.0
Msa1121610 AT1G16060.7 77.193 57 13 0 372 428 10 66 9.21e-17 79.3
Msa1121610 AT3G54990.2 43.396 106 47 3 268 370 123 218 4.99e-15 75.9
Msa1121610 AT3G54990.1 43.396 106 47 3 268 370 123 218 1.15e-14 76.6

Find 147 sgRNAs with CRISPR-Local

Find 242 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATTGTTGCTTCTTTGATTT+TGG 0.129662 7_3:-71717497 None:intergenic
GGATCTAATTCTGTTGTTTA+TGG 0.168865 7_3:+71717402 Msa1121610:CDS
GGTTATTGTTGTTCATATTT+TGG 0.176947 7_3:-71714304 None:intergenic
CAAAGAAGCAACAATAATTT+TGG 0.188537 7_3:+71717504 Msa1121610:CDS
CAAACGGTGGCTTCTCGTTT+TGG 0.188561 7_3:+71713816 Msa1121610:CDS
CCTTGTTACTCCTCGGTAAA+TGG 0.210629 7_3:-71715992 None:intergenic
CCTTGTTACACCACGGTAAA+TGG 0.220419 7_3:-71714801 None:intergenic
ATTTGGCAGCACTAAAATAT+TGG 0.237264 7_3:+71715422 Msa1121610:CDS
AACAATACTCACAATTTCTT+TGG 0.250983 7_3:+71717330 Msa1121610:CDS
CTGTTGATCAAGGATCAAAT+TGG 0.252268 7_3:+71717634 Msa1121610:CDS
TATGATCTTGTTCTGTTCTA+TGG 0.264878 7_3:-71717053 None:intergenic
GGTGGAGATCATGGTGGTTA+TGG 0.278181 7_3:+71717426 Msa1121610:CDS
TCAGAACCTGAGATTTCATT+AGG 0.293320 7_3:-71713846 None:intergenic
AGAGAGACATTGGTAGTTCT+TGG 0.295561 7_3:-71717684 None:intergenic
TTTGGCAGCACTAAAATATT+GGG 0.305185 7_3:+71715423 Msa1121610:CDS
CAGCAACAAATGCATCTAAT+TGG 0.315390 7_3:+71717121 Msa1121610:CDS
AGAAAATCCATTGATACATT+TGG 0.320046 7_3:+71714767 Msa1121610:CDS
GCTTCCATGGATAATAGTTC+TGG 0.326230 7_3:+71717381 Msa1121610:CDS
ATGGCCTCTATGAACTTGTT+AGG 0.336794 7_3:+71713750 Msa1121610:CDS
GAGAGTGAGATTAAGGGATT+TGG 0.337891 7_3:+71717528 Msa1121610:CDS
TAATGTGCTGCTCTCAAGTA+TGG 0.346258 7_3:-71716953 None:intergenic
CACTTTCAACGGCACTTGTT+TGG 0.354342 7_3:-71714736 None:intergenic
TGTGTGGAAAGCTTCATAAA+TGG 0.358443 7_3:-71713946 None:intergenic
CGAGCTTTGGTTGTGCTTGT+TGG 0.361890 7_3:-71714325 None:intergenic
GATATTCATCAACTACAGTT+AGG 0.380988 7_3:+71717297 Msa1121610:CDS
AAAGCTTCATAAATGGAAAA+AGG 0.383369 7_3:-71713939 None:intergenic
GCTAGGATTGGAAGAGTTGC+AGG 0.384571 7_3:+71716507 Msa1121610:CDS
ATGTTCTCAATAGTAGGTTT+TGG 0.390261 7_3:-71714271 None:intergenic
CAGTTACAGAATTATCCTTA+TGG 0.398744 7_3:+71717201 Msa1121610:CDS
ACAAGTAACAATAACTCAAT+AGG 0.403671 7_3:+71714488 Msa1121610:CDS
CTTGCTGCTTGTGCATGATA+AGG 0.405059 7_3:-71717582 None:intergenic
CAGAACCTGAGATTTCATTA+GGG 0.409124 7_3:-71713845 None:intergenic
GAATTGATTGAAGGCATAGA+TGG 0.410587 7_3:+71715011 Msa1121610:intron
CATGTGAATGTTGTTGATAT+TGG 0.412603 7_3:+71717030 Msa1121610:CDS
GGAGATATGAAGCTCACCTT+TGG 0.414893 7_3:+71715038 Msa1121610:CDS
ACCGTTTGATCTTGAGTTGA+TGG 0.416817 7_3:-71713801 None:intergenic
TTTGGTGAGAGTGAGATTAA+GGG 0.417815 7_3:+71717522 Msa1121610:CDS
GGTGACGGTGGTGGTGGTGA+TGG 0.418439 7_3:+71714461 Msa1121610:CDS
GTTTATGGTGGTGGAGATCA+TGG 0.419499 7_3:+71717417 Msa1121610:CDS
GACATCATCAACATGGTAGA+TGG 0.429729 7_3:+71716481 Msa1121610:intron
GTACTCAAACTCAAAAGCTT+TGG 0.432762 7_3:+71717223 Msa1121610:CDS
CCGGAAGCATCTTGTGGCGC+TGG 0.436261 7_3:+71714437 Msa1121610:CDS
CATGGTGGTTATGGAGGAAA+TGG 0.438514 7_3:+71717435 Msa1121610:CDS
CCAGCGCCACAAGATGCTTC+CGG 0.439118 7_3:-71714437 None:intergenic
CCATCATTTGCAATAGCCAT+TGG 0.439632 7_3:-71717471 None:intergenic
GCTGGTGGTGACGGTGGTGG+TGG 0.442442 7_3:+71714455 Msa1121610:CDS
AATTCTGTTGTTTATGGTGG+TGG 0.443451 7_3:+71717408 Msa1121610:CDS
GAGATATGAAGCTCACCTTT+GGG 0.446101 7_3:+71715039 Msa1121610:CDS
GGCAGCTAGAGCCTATGATT+TGG 0.446802 7_3:+71715405 Msa1121610:CDS
TCTTTGTCCAAATGTATCAA+TGG 0.448794 7_3:-71714774 None:intergenic
TGCATTTGTTGCTGCATACA+TGG 0.457321 7_3:-71717112 None:intergenic
GATTGAAGGCATAGATGGAC+AGG 0.470393 7_3:+71715016 Msa1121610:intron
AGGTTATGACAAAGAAGAAA+AGG 0.471219 7_3:+71715384 Msa1121610:CDS
GGCGCTGGTGGTGACGGTGG+TGG 0.471418 7_3:+71714452 Msa1121610:CDS
TGCATGATGTTCTCAATAGT+AGG 0.474755 7_3:-71714277 None:intergenic
ATCAAGTACTACTGCAGTTG+TGG 0.479668 7_3:-71714708 None:intergenic
TGTTGATCAAGGATCAAATT+GGG 0.482329 7_3:+71717635 Msa1121610:CDS
TTTGCTTACTGAAAGTTCCT+AGG 0.485677 7_3:-71716545 None:intergenic
ATTCTGTAACTGCATGTTGT+TGG 0.487352 7_3:-71717190 None:intergenic
GAGAGCAGCACATTACCAAT+TGG 0.487985 7_3:+71716961 Msa1121610:CDS
TTTACCGACCATCATGAATA+CGG 0.492970 7_3:+71714371 Msa1121610:CDS
CCAATGGCTATTGCAAATGA+TGG 0.493694 7_3:+71717471 Msa1121610:CDS
CTGATGAGGTGGAAGGTGTA+AGG 0.495711 7_3:-71714414 None:intergenic
AACAACATTCACACCACTCA+AGG 0.496373 7_3:+71713972 Msa1121610:CDS
GATGATGTGGTTGTTGATGT+TGG 0.506938 7_3:-71717158 None:intergenic
AACAACAATAACAATGAAAG+TGG 0.507141 7_3:+71714563 Msa1121610:CDS
GGTAGATGGCAAGCTAGGAT+TGG 0.507927 7_3:+71716495 Msa1121610:CDS
TTTACAAAATATCATGAGCA+TGG 0.510195 7_3:+71717353 Msa1121610:CDS
AGGAGGACAAAGAGAGACAT+TGG 0.511641 7_3:-71717694 None:intergenic
GAGCATGGATTCTGCTTCCA+TGG 0.513611 7_3:+71717368 Msa1121610:CDS
TTCAACCCTAATGAAATCTC+AGG 0.515786 7_3:+71713840 Msa1121610:CDS
GTAGTTCTTGGAGCAAGTGT+TGG 0.515849 7_3:-71717672 None:intergenic
TCTTGTGGCGCTGGTGGTGA+CGG 0.517320 7_3:+71714446 Msa1121610:CDS
GTTGATGGATGTTGTTCTTG+TGG 0.519936 7_3:-71713786 None:intergenic
TCTAATTCTGTTGTTTATGG+TGG 0.520329 7_3:+71717405 Msa1121610:CDS
TCCATCAACTCAAGATCAAA+CGG 0.521228 7_3:+71713800 Msa1121610:CDS
CACTCAAGAAGAGGCAGCAG+AGG 0.522745 7_3:+71716852 Msa1121610:CDS
TGACTGTGAGCCAGTACTCA+TGG 0.522920 7_3:-71714612 None:intergenic
CTATCACTTTCCATGAGTAC+TGG 0.523226 7_3:+71714602 Msa1121610:CDS
ATCTCAGGTTCTGATGTTCA+AGG 0.526778 7_3:+71713855 Msa1121610:CDS
GGTGGTTATGGAGGAAATGG+TGG 0.526912 7_3:+71717438 Msa1121610:CDS
CAAGATGCTTCCGGCTGATG+AGG 0.528029 7_3:-71714428 None:intergenic
ATATTCATCAACTACAGTTA+GGG 0.529923 7_3:+71717298 Msa1121610:CDS
CCATTTACCGTGGTGTAACA+AGG 0.530421 7_3:+71714801 Msa1121610:CDS
CAACAATTATCTGTTGATCA+AGG 0.532166 7_3:+71717624 Msa1121610:CDS
TTGGCATTGTAATGATGATG+TGG 0.537975 7_3:-71717171 None:intergenic
ATGTGGTTGTTGATGTTGGA+AGG 0.539637 7_3:-71717154 None:intergenic
ATCACATTTGCATTGAGAAG+AGG 0.545455 7_3:-71714647 None:intergenic
TCAAGTACTACTGCAGTTGT+GGG 0.549269 7_3:-71714707 None:intergenic
GGAGATCATGGTGGTTATGG+AGG 0.550320 7_3:+71717429 Msa1121610:CDS
GCAAGTGTTGGAATAGCAGT+TGG 0.551281 7_3:-71717660 None:intergenic
GACAATAGTTGTAGAAGAGA+GGG 0.552085 7_3:+71715061 Msa1121610:CDS
AGGGGCAGACTCGCAAAGGA+AGG 0.556032 7_3:+71715080 Msa1121610:CDS
GAACAAGATTCTGATGATCA+TGG 0.556044 7_3:+71717255 Msa1121610:CDS
TGTGAATGTTGTTATTTGTG+TGG 0.561378 7_3:-71713962 None:intergenic
GATGCTTCCGGCTGATGAGG+TGG 0.563493 7_3:-71714425 None:intergenic
AAATGTACCTTGTTACTCCT+CGG 0.570528 7_3:-71715999 None:intergenic
GAAGCATCTTGTGGCGCTGG+TGG 0.570788 7_3:+71714440 Msa1121610:CDS
TTCTACAACTATTGTCCCAA+AGG 0.572108 7_3:-71715054 None:intergenic
ACACCTTCCACCTCATCAGC+CGG 0.572285 7_3:+71714418 Msa1121610:CDS
AGATCCAGAACTATTATCCA+TGG 0.572634 7_3:-71717385 None:intergenic
AACATGGTAGATGGCAAGCT+AGG 0.575560 7_3:+71716490 Msa1121610:CDS
TCTAGGCACAGCACTTTCAA+CGG 0.577237 7_3:-71714747 None:intergenic
CATTCATGCAACAAAGTGAA+AGG 0.578679 7_3:-71717714 None:intergenic
GGACAATAGTTGTAGAAGAG+AGG 0.583749 7_3:+71715060 Msa1121610:CDS
AGCAGCACATTACCAATTGG+TGG 0.591768 7_3:+71716964 Msa1121610:CDS
GAGTGGTGAGATTTCCTCAT+CGG 0.592080 7_3:+71714670 Msa1121610:CDS
CCAAAGCTCGAAAACTTCCT+CGG 0.593046 7_3:+71714338 Msa1121610:CDS
AGAGAGGGGCAGACTCGCAA+AGG 0.594516 7_3:+71715076 Msa1121610:CDS
GAAACCTAACAAGTTCATAG+AGG 0.596391 7_3:-71713754 None:intergenic
CATCAGCCGGAAGCATCTTG+TGG 0.598304 7_3:+71714431 Msa1121610:CDS
TATTGGCACAGGAAAAGTAG+TGG 0.604046 7_3:+71715952 Msa1121610:intron
AAGAAATGAAGCACATGACA+AGG 0.607294 7_3:+71715801 Msa1121610:CDS
AGTACGTTGCGTCATTGAGA+AGG 0.611177 7_3:+71715828 Msa1121610:CDS
TTGGCAGCACTAAAATATTG+GGG 0.612951 7_3:+71715424 Msa1121610:CDS
TGTGGCGCTGGTGGTGACGG+TGG 0.613919 7_3:+71714449 Msa1121610:CDS
TGCAAAACGTTTAAAAGACA+TGG 0.615292 7_3:+71716990 Msa1121610:CDS
TGCTACCACCGTATTCATGA+TGG 0.619805 7_3:-71714379 None:intergenic
TGATCAACAGATAATTGTTG+TGG 0.624333 7_3:-71717621 None:intergenic
GGCAGCAGAGGCATATGATG+TGG 0.626863 7_3:+71716864 Msa1121610:CDS
CCATTTACCGAGGAGTAACA+AGG 0.628541 7_3:+71715992 Msa1121610:CDS
CTTATCATGCACAAGCAGCA+AGG 0.629083 7_3:+71717583 Msa1121610:CDS
CAATATCAACAACATTCACA+TGG 0.635669 7_3:-71717029 None:intergenic
CTTCCGGCTGATGAGGTGGA+AGG 0.639887 7_3:-71714421 None:intergenic
TGGTGGATATATGATTCCAA+TGG 0.641072 7_3:+71717455 Msa1121610:CDS
GGCTTGTTCTGTTAAATGTG+AGG 0.646304 7_3:-71717091 None:intergenic
CAGACTCGCAAAGGAAGGCA+AGG 0.652221 7_3:+71715085 Msa1121610:CDS
CGTGGTGCATCCATTTACCG+AGG 0.653077 7_3:+71715982 Msa1121610:CDS
TATGGTGGTGGAGATCATGG+TGG 0.659784 7_3:+71717420 Msa1121610:CDS
GAGAAGAGAGATCATAGCAG+TGG 0.660100 7_3:-71713881 None:intergenic
GTGGCTGCAATAAAATTCAG+AGG 0.661589 7_3:+71716883 Msa1121610:CDS
ACAATAGTTGTAGAAGAGAG+GGG 0.663901 7_3:+71715062 Msa1121610:CDS
GAAAGGTTGAGTGAATGATG+AGG 0.665325 7_3:-71713912 None:intergenic
GGCAACAAAGATCTCTACCT+AGG 0.670359 7_3:+71716528 Msa1121610:CDS
TCATGCAACAAAGTGAAAGG+AGG 0.672871 7_3:-71717711 None:intergenic
CTCAATGCAAATGTGATGAG+TGG 0.677659 7_3:+71714653 Msa1121610:CDS
AAGCTCGAAAACTTCCTCGG+TGG 0.682363 7_3:+71714341 Msa1121610:CDS
CAAAGAACTTCCATTTACCG+TGG 0.683820 7_3:+71714791 Msa1121610:CDS
TAGAGAACCTTGTTACACCA+CGG 0.689510 7_3:-71714808 None:intergenic
AGTACTACTGCAGTTGTGGG+TGG 0.690635 7_3:-71714704 None:intergenic
GATTGCAGACATCATCAACA+TGG 0.696140 7_3:+71716474 Msa1121610:intron
ATTGAAGGCATAGATGGACA+GGG 0.699437 7_3:+71715017 Msa1121610:intron
ACCACCGTATTCATGATGGT+CGG 0.701815 7_3:-71714375 None:intergenic
ACCGACCATCATGAATACGG+TGG 0.718644 7_3:+71714374 Msa1121610:CDS
ATCAACTCAAGATCAAACGG+TGG 0.736375 7_3:+71713803 Msa1121610:CDS
GAAAGAAGTGAAACCTTGAG+TGG 0.748092 7_3:-71713985 None:intergenic
CGGTAAAAGAGTGTCCACCG+AGG 0.771614 7_3:-71714355 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTATTTATTTATTTATTT+GGG - chr7_3:71716359-71716378 None:intergenic 0.0%
!!! TTTTTATTTATTTATTTATT+TGG - chr7_3:71716360-71716379 None:intergenic 0.0%
!!! ATATGATTCTTTAAAATAAT+TGG + chr7_3:71715289-71715308 Msa1121610:intron 10.0%
!!! ATCTAAAAATATTTGAGTTT+TGG - chr7_3:71714196-71714215 None:intergenic 15.0%
!!! AACTTTTTATTTTTTCAGAT+TGG + chr7_3:71714231-71714250 Msa1121610:intron 15.0%
!!! TATAAAGTTTTGCATTATAA+GGG - chr7_3:71715687-71715706 None:intergenic 15.0%
!!! ATATAAAGTTTTGCATTATA+AGG - chr7_3:71715688-71715707 None:intergenic 15.0%
!! TGTACATTAATTGATATTAT+TGG + chr7_3:71715935-71715954 Msa1121610:intron 15.0%
!! CAAATATAGAAATAATGTAT+TGG - chr7_3:71716297-71716316 None:intergenic 15.0%
!!! ATTTTTGCTTTATTTATATC+TGG - chr7_3:71716797-71716816 None:intergenic 15.0%
!! AATAGATAAGAAGAAAAAGA+AGG - chr7_3:71714025-71714044 None:intergenic 20.0%
!!! TCTTATCTATTTCTAGTATA+AGG + chr7_3:71714034-71714053 Msa1121610:intron 20.0%
!!! AACTCAAATATTTTTAGATG+CGG + chr7_3:71714197-71714216 Msa1121610:intron 20.0%
!!! TTTTATTTTTTCAGATTGGA+AGG + chr7_3:71714235-71714254 Msa1121610:intron 20.0%
!! GTTTATCTATGATAAAAACA+TGG + chr7_3:71714510-71714529 Msa1121610:CDS 20.0%
!!! AAGTTCTTTTTTCTTCAAAA+TGG - chr7_3:71714934-71714953 None:intergenic 20.0%
!! TATATCATCACAATGAATTA+AGG + chr7_3:71715512-71715531 Msa1121610:intron 20.0%
!! AACTATTACTAATTAGATTC+AGG + chr7_3:71715876-71715895 Msa1121610:intron 20.0%
!! AATTTATGCTCAATAAACTA+AGG - chr7_3:71715904-71715923 None:intergenic 20.0%
!! CTTTACTATTTGTCTTTATT+TGG - chr7_3:71716027-71716046 None:intergenic 20.0%
!!! TAGACATTTATGATTTTCAT+GGG - chr7_3:71716092-71716111 None:intergenic 20.0%
!!! AATTGCTATTGAAATAACTT+CGG + chr7_3:71716141-71716160 Msa1121610:intron 20.0%
!! ATTAAATTCGATTACAATTG+TGG + chr7_3:71716383-71716402 Msa1121610:intron 20.0%
!! TTTATCTATGTTAAAATGTG+AGG - chr7_3:71716617-71716636 None:intergenic 20.0%
!!! AAGTGATCAACAATTTTTTT+AGG + chr7_3:71716829-71716848 Msa1121610:intron 20.0%
!!! TTTGGTTATGAAAATGTTTT+TGG + chr7_3:71717546-71717565 Msa1121610:CDS 20.0%
!!! TTGGTTATGAAAATGTTTTT+GGG + chr7_3:71717547-71717566 Msa1121610:CDS 20.0%
! AAAGCTTCATAAATGGAAAA+AGG - chr7_3:71713942-71713961 None:intergenic 25.0%
!! TCTAGTATAAGGTTTCATTT+TGG + chr7_3:71714045-71714064 Msa1121610:intron 25.0%
!!! GGTTATTGTTGTTCATATTT+TGG - chr7_3:71714307-71714326 None:intergenic 25.0%
! ACAAGTAACAATAACTCAAT+AGG + chr7_3:71714488-71714507 Msa1121610:CDS 25.0%
!!! TTATTGTTGTTGTTGTTTTC+TGG - chr7_3:71714554-71714573 None:intergenic 25.0%
! AACAACAATAACAATGAAAG+TGG + chr7_3:71714563-71714582 Msa1121610:CDS 25.0%
!!! AATGTATCAATGGATTTTCT+AGG - chr7_3:71714767-71714786 None:intergenic 25.0%
! AGAAAATCCATTGATACATT+TGG + chr7_3:71714767-71714786 Msa1121610:CDS 25.0%
! ATGGCAAAGAAAATACTTAT+AGG - chr7_3:71714915-71714934 None:intergenic 25.0%
!!! GTGTTAAAATTTGTTGATGT+TGG + chr7_3:71715343-71715362 Msa1121610:intron 25.0%
! TTCATTGTGATGATATAAAG+AGG - chr7_3:71715509-71715528 None:intergenic 25.0%
! AACAATGGTGATTCATATAT+TGG + chr7_3:71715594-71715613 Msa1121610:intron 25.0%
!!! GATTTACTTTTCATTGTACA+TGG - chr7_3:71715623-71715642 None:intergenic 25.0%
! AAATCAATTTCCTCATTTGA+TGG + chr7_3:71715638-71715657 Msa1121610:intron 25.0%
! TTAATTGATATTATTGGCAC+AGG + chr7_3:71715941-71715960 Msa1121610:intron 25.0%
!! GTAGACATTTATGATTTTCA+TGG - chr7_3:71716093-71716112 None:intergenic 25.0%
! TTAAATAAATTTGTGCCCTT+AGG + chr7_3:71716177-71716196 Msa1121610:intron 25.0%
! ATGCATATATACTATTGGAT+TGG - chr7_3:71716679-71716698 None:intergenic 25.0%
! ATATTCATCAACTACAGTTA+GGG + chr7_3:71717298-71717317 Msa1121610:CDS 25.0%
! AACAATACTCACAATTTCTT+TGG + chr7_3:71717330-71717349 Msa1121610:CDS 25.0%
! TTTACAAAATATCATGAGCA+TGG + chr7_3:71717353-71717372 Msa1121610:CDS 25.0%
!!! TATTGTTGCTTCTTTGATTT+TGG - chr7_3:71717500-71717519 None:intergenic 25.0%
!! CAAAGAAGCAACAATAATTT+TGG + chr7_3:71717504-71717523 Msa1121610:CDS 25.0%
AAATGGAAAAAGGATGAGAA+AGG - chr7_3:71713932-71713951 None:intergenic 30.0%
!! TGTGAATGTTGTTATTTGTG+TGG - chr7_3:71713965-71713984 None:intergenic 30.0%
AAAAAGAAGGTTGGAGTTAT+TGG - chr7_3:71714012-71714031 None:intergenic 30.0%
GATAAGAAGAAAAAGAAGGT+TGG - chr7_3:71714021-71714040 None:intergenic 30.0%
! ATGTTCTCAATAGTAGGTTT+TGG - chr7_3:71714274-71714293 None:intergenic 30.0%
TCTTTGTCCAAATGTATCAA+TGG - chr7_3:71714777-71714796 None:intergenic 30.0%
!!! TAGGGTTTTGAATTGATTGA+AGG + chr7_3:71715002-71715021 Msa1121610:intron 30.0%
! GTTGGTTTATGTACTATTGT+AGG + chr7_3:71715361-71715380 Msa1121610:intron 30.0%
AGGTTATGACAAAGAAGAAA+AGG + chr7_3:71715384-71715403 Msa1121610:CDS 30.0%
ATTTGGCAGCACTAAAATAT+TGG + chr7_3:71715422-71715441 Msa1121610:CDS 30.0%
TTTGGCAGCACTAAAATATT+GGG + chr7_3:71715423-71715442 Msa1121610:CDS 30.0%
CAATGAATTAAGGAACATGT+TGG + chr7_3:71715522-71715541 Msa1121610:intron 30.0%
!! CATTGTTGCTTGGTTATTTT+TGG - chr7_3:71715581-71715600 None:intergenic 30.0%
CAAAAATAACCAAGCAACAA+TGG + chr7_3:71715579-71715598 Msa1121610:intron 30.0%
!! CGATAACAACTTGTTGATAT+TGG + chr7_3:71715715-71715734 Msa1121610:intron 30.0%
TAGCCATTATGAAAAAGAAG+TGG + chr7_3:71715778-71715797 Msa1121610:CDS 30.0%
!! CTTCCACTTCTTTTTCATAA+TGG - chr7_3:71715784-71715803 None:intergenic 30.0%
CTAATTAGTAATAGTTCGTG+TGG - chr7_3:71715872-71715891 None:intergenic 30.0%
!! ATTCTTTAACTTGTGCCTTA+AGG + chr7_3:71716317-71716336 Msa1121610:intron 30.0%
!! TTCTTTAACTTGTGCCTTAA+GGG + chr7_3:71716318-71716337 Msa1121610:intron 30.0%
TCTATGTTAAAATGTGAGGT+AGG - chr7_3:71716613-71716632 None:intergenic 30.0%
TGCACATGCATATATACTAT+TGG - chr7_3:71716684-71716703 None:intergenic 30.0%
CAGATTTCAGATGCATATAT+AGG - chr7_3:71716744-71716763 None:intergenic 30.0%
TGCAAAACGTTTAAAAGACA+TGG + chr7_3:71716990-71717009 Msa1121610:CDS 30.0%
CAATATCAACAACATTCACA+TGG - chr7_3:71717032-71717051 None:intergenic 30.0%
CATGTGAATGTTGTTGATAT+TGG + chr7_3:71717030-71717049 Msa1121610:CDS 30.0%
TATGATCTTGTTCTGTTCTA+TGG - chr7_3:71717056-71717075 None:intergenic 30.0%
CAGTTACAGAATTATCCTTA+TGG + chr7_3:71717201-71717220 Msa1121610:CDS 30.0%
!!! TTTTGAGTTTGAGTACCATA+AGG - chr7_3:71717219-71717238 None:intergenic 30.0%
GATATTCATCAACTACAGTT+AGG + chr7_3:71717297-71717316 Msa1121610:CDS 30.0%
! GGATCTAATTCTGTTGTTTA+TGG + chr7_3:71717402-71717421 Msa1121610:CDS 30.0%
! TCTAATTCTGTTGTTTATGG+TGG + chr7_3:71717405-71717424 Msa1121610:CDS 30.0%
TGATCAACAGATAATTGTTG+TGG - chr7_3:71717624-71717643 None:intergenic 30.0%
CAACAATTATCTGTTGATCA+AGG + chr7_3:71717624-71717643 Msa1121610:CDS 30.0%
TGTTGATCAAGGATCAAATT+GGG + chr7_3:71717635-71717654 Msa1121610:CDS 30.0%
GAAACCTAACAAGTTCATAG+AGG - chr7_3:71713757-71713776 None:intergenic 35.0%
TCCATCAACTCAAGATCAAA+CGG + chr7_3:71713800-71713819 Msa1121610:CDS 35.0%
TTCAACCCTAATGAAATCTC+AGG + chr7_3:71713840-71713859 Msa1121610:CDS 35.0%
CAGAACCTGAGATTTCATTA+GGG - chr7_3:71713848-71713867 None:intergenic 35.0%
TCAGAACCTGAGATTTCATT+AGG - chr7_3:71713849-71713868 None:intergenic 35.0%
TGTGTGGAAAGCTTCATAAA+TGG - chr7_3:71713949-71713968 None:intergenic 35.0%
TGCATGATGTTCTCAATAGT+AGG - chr7_3:71714280-71714299 None:intergenic 35.0%
TTTACCGACCATCATGAATA+CGG + chr7_3:71714371-71714390 Msa1121610:CDS 35.0%
!!! TTGTTGTTGTTGTTTTCTGG+TGG - chr7_3:71714551-71714570 None:intergenic 35.0%
ATCACATTTGCATTGAGAAG+AGG - chr7_3:71714650-71714669 None:intergenic 35.0%
! AGATGCATGATGATGAGTTT+AGG + chr7_3:71714983-71715002 Msa1121610:intron 35.0%
! GATGCATGATGATGAGTTTA+GGG + chr7_3:71714984-71715003 Msa1121610:intron 35.0%
! GAATTGATTGAAGGCATAGA+TGG + chr7_3:71715011-71715030 Msa1121610:intron 35.0%
TTCTACAACTATTGTCCCAA+AGG - chr7_3:71715057-71715076 None:intergenic 35.0%
GACAATAGTTGTAGAAGAGA+GGG + chr7_3:71715061-71715080 Msa1121610:CDS 35.0%
ACAATAGTTGTAGAAGAGAG+GGG + chr7_3:71715062-71715081 Msa1121610:CDS 35.0%
ATGAACACCATAGAGGAAAA+GGG - chr7_3:71715228-71715247 None:intergenic 35.0%
TACATTGATGAACACCATAG+AGG - chr7_3:71715235-71715254 None:intergenic 35.0%
ATGGTGTTCATCAATGTACA+TGG + chr7_3:71715237-71715256 Msa1121610:intron 35.0%
!! ACATGGTTTTGCAGTTTACT+TGG + chr7_3:71715254-71715273 Msa1121610:intron 35.0%
!! CATGGTTTTGCAGTTTACTT+GGG + chr7_3:71715255-71715274 Msa1121610:intron 35.0%
GGTTTATGTACTATTGTAGG+AGG + chr7_3:71715364-71715383 Msa1121610:intron 35.0%
! TTTTAGTGCTGCCAAATCAT+AGG - chr7_3:71715419-71715438 None:intergenic 35.0%
TTGGCAGCACTAAAATATTG+GGG + chr7_3:71715424-71715443 Msa1121610:CDS 35.0%
GTAAGTGGAAATTAACTCAC+TGG - chr7_3:71715472-71715491 None:intergenic 35.0%
GAGCAGATTAAAAGAGTAAG+TGG - chr7_3:71715487-71715506 None:intergenic 35.0%
TATGAATCACCATTGTTGCT+TGG - chr7_3:71715591-71715610 None:intergenic 35.0%
AAGAAATGAAGCACATGACA+AGG + chr7_3:71715801-71715820 Msa1121610:CDS 35.0%
! AAAAGTAGTGGTTTTTCTCG+TGG + chr7_3:71715964-71715983 Msa1121610:CDS 35.0%
AAATGTACCTTGTTACTCCT+CGG - chr7_3:71716002-71716021 None:intergenic 35.0%
GTTCTTAACATGTGTCCTAA+GGG - chr7_3:71716195-71716214 None:intergenic 35.0%
AGTTCTTAACATGTGTCCTA+AGG - chr7_3:71716196-71716215 None:intergenic 35.0%
!! AATGTTAACTTGTGCCCTTA+AGG - chr7_3:71716335-71716354 None:intergenic 35.0%
TTTGCTTACTGAAAGTTCCT+AGG - chr7_3:71716548-71716567 None:intergenic 35.0%
!!! TTTTTTAGGCACTCAAGAAG+AGG + chr7_3:71716843-71716862 Msa1121610:intron 35.0%
CAGCAACAAATGCATCTAAT+TGG + chr7_3:71717121-71717140 Msa1121610:CDS 35.0%
! TTGGCATTGTAATGATGATG+TGG - chr7_3:71717174-71717193 None:intergenic 35.0%
ATTCTGTAACTGCATGTTGT+TGG - chr7_3:71717193-71717212 None:intergenic 35.0%
GTACTCAAACTCAAAAGCTT+TGG + chr7_3:71717223-71717242 Msa1121610:CDS 35.0%
GAACAAGATTCTGATGATCA+TGG + chr7_3:71717255-71717274 Msa1121610:CDS 35.0%
AGATCCAGAACTATTATCCA+TGG - chr7_3:71717388-71717407 None:intergenic 35.0%
! AATTCTGTTGTTTATGGTGG+TGG + chr7_3:71717408-71717427 Msa1121610:CDS 35.0%
! TGGTGGATATATGATTCCAA+TGG + chr7_3:71717455-71717474 Msa1121610:CDS 35.0%
! TTTTGGTGAGAGTGAGATTA+AGG + chr7_3:71717521-71717540 Msa1121610:CDS 35.0%
TTTGGTGAGAGTGAGATTAA+GGG + chr7_3:71717522-71717541 Msa1121610:CDS 35.0%
CTGTTGATCAAGGATCAAAT+TGG + chr7_3:71717634-71717653 Msa1121610:CDS 35.0%
CATTCATGCAACAAAGTGAA+AGG - chr7_3:71717717-71717736 None:intergenic 35.0%
! ATGGCCTCTATGAACTTGTT+AGG + chr7_3:71713750-71713769 Msa1121610:CDS 40.0%
! GTTGATGGATGTTGTTCTTG+TGG - chr7_3:71713789-71713808 None:intergenic 40.0%
!! ACCGTTTGATCTTGAGTTGA+TGG - chr7_3:71713804-71713823 None:intergenic 40.0%
ATCAACTCAAGATCAAACGG+TGG + chr7_3:71713803-71713822 Msa1121610:CDS 40.0%
! ATCTCAGGTTCTGATGTTCA+AGG + chr7_3:71713855-71713874 Msa1121610:CDS 40.0%
GAAAGGTTGAGTGAATGATG+AGG - chr7_3:71713915-71713934 None:intergenic 40.0%
AACAACATTCACACCACTCA+AGG + chr7_3:71713972-71713991 Msa1121610:CDS 40.0%
GAAAGAAGTGAAACCTTGAG+TGG - chr7_3:71713988-71714007 None:intergenic 40.0%
!!! TTGTTGTTGTTTTCTGGTGG+TGG - chr7_3:71714548-71714567 None:intergenic 40.0%
CTATCACTTTCCATGAGTAC+TGG + chr7_3:71714602-71714621 Msa1121610:CDS 40.0%
CTCAATGCAAATGTGATGAG+TGG + chr7_3:71714653-71714672 Msa1121610:CDS 40.0%
!! TGGTTGTTTGTTTTCCGATG+AGG - chr7_3:71714687-71714706 None:intergenic 40.0%
TCAAGTACTACTGCAGTTGT+GGG - chr7_3:71714710-71714729 None:intergenic 40.0%
ATCAAGTACTACTGCAGTTG+TGG - chr7_3:71714711-71714730 None:intergenic 40.0%
CAAAGAACTTCCATTTACCG+TGG + chr7_3:71714791-71714810 Msa1121610:CDS 40.0%
TAGAGAACCTTGTTACACCA+CGG - chr7_3:71714811-71714830 None:intergenic 40.0%
! ATTGAAGGCATAGATGGACA+GGG + chr7_3:71715017-71715036 Msa1121610:intron 40.0%
GAGATATGAAGCTCACCTTT+GGG + chr7_3:71715039-71715058 Msa1121610:CDS 40.0%
GGACAATAGTTGTAGAAGAG+AGG + chr7_3:71715060-71715079 Msa1121610:CDS 40.0%
GATGAACACCATAGAGGAAA+AGG - chr7_3:71715229-71715248 None:intergenic 40.0%
!!! TAAGGAACATGTTGGCCTTT+TGG + chr7_3:71715530-71715549 Msa1121610:intron 40.0%
GTTGCTTGGTTAATGCCAAA+AGG - chr7_3:71715548-71715567 None:intergenic 40.0%
CAGACACATTCCATCAAATG+AGG - chr7_3:71715651-71715670 None:intergenic 40.0%
TATTGGCACAGGAAAAGTAG+TGG + chr7_3:71715952-71715971 Msa1121610:intron 40.0%
GATTGCAGACATCATCAACA+TGG + chr7_3:71716474-71716493 Msa1121610:intron 40.0%
GACATCATCAACATGGTAGA+TGG + chr7_3:71716481-71716500 Msa1121610:intron 40.0%
GTGGCTGCAATAAAATTCAG+AGG + chr7_3:71716883-71716902 Msa1121610:CDS 40.0%
! TAATGTGCTGCTCTCAAGTA+TGG - chr7_3:71716956-71716975 None:intergenic 40.0%
! GGCTTGTTCTGTTAAATGTG+AGG - chr7_3:71717094-71717113 None:intergenic 40.0%
! TGCATTTGTTGCTGCATACA+TGG - chr7_3:71717115-71717134 None:intergenic 40.0%
ATGTGGTTGTTGATGTTGGA+AGG - chr7_3:71717157-71717176 None:intergenic 40.0%
GATGATGTGGTTGTTGATGT+TGG - chr7_3:71717161-71717180 None:intergenic 40.0%
GCTTCCATGGATAATAGTTC+TGG + chr7_3:71717381-71717400 Msa1121610:CDS 40.0%
CCATCATTTGCAATAGCCAT+TGG - chr7_3:71717474-71717493 None:intergenic 40.0%
CCAATGGCTATTGCAAATGA+TGG + chr7_3:71717471-71717490 Msa1121610:CDS 40.0%
GAGAGTGAGATTAAGGGATT+TGG + chr7_3:71717528-71717547 Msa1121610:CDS 40.0%
! AGAGAGACATTGGTAGTTCT+TGG - chr7_3:71717687-71717706 None:intergenic 40.0%
TCATGCAACAAAGTGAAAGG+AGG - chr7_3:71717714-71717733 None:intergenic 40.0%
! AAACGGTGGCTTCTCGTTTT+GGG + chr7_3:71713817-71713836 Msa1121610:CDS 45.0%
GAGAAGAGAGATCATAGCAG+TGG - chr7_3:71713884-71713903 None:intergenic 45.0%
TGGTGCAGTGAGATTCTAGT+CGG - chr7_3:71714176-71714195 None:intergenic 45.0%
CCAAAGCTCGAAAACTTCCT+CGG + chr7_3:71714338-71714357 Msa1121610:CDS 45.0%
ACCACCGTATTCATGATGGT+CGG - chr7_3:71714378-71714397 None:intergenic 45.0%
TGCTACCACCGTATTCATGA+TGG - chr7_3:71714382-71714401 None:intergenic 45.0%
!!! TGTTGTTTTCTGGTGGTGGT+TGG - chr7_3:71714544-71714563 None:intergenic 45.0%
GAGTGGTGAGATTTCCTCAT+CGG + chr7_3:71714670-71714689 Msa1121610:CDS 45.0%
CACTTTCAACGGCACTTGTT+TGG - chr7_3:71714739-71714758 None:intergenic 45.0%
TCTAGGCACAGCACTTTCAA+CGG - chr7_3:71714750-71714769 None:intergenic 45.0%
CCTTGTTACACCACGGTAAA+TGG - chr7_3:71714804-71714823 None:intergenic 45.0%
CCATTTACCGTGGTGTAACA+AGG + chr7_3:71714801-71714820 Msa1121610:CDS 45.0%
! GATTGAAGGCATAGATGGAC+AGG + chr7_3:71715016-71715035 Msa1121610:intron 45.0%
GGAGATATGAAGCTCACCTT+TGG + chr7_3:71715038-71715057 Msa1121610:CDS 45.0%
! TTGCATGCCCTTTTCCTCTA+TGG + chr7_3:71715218-71715237 Msa1121610:intron 45.0%
TTGCAGTTTACTTGGGTGAG+TGG + chr7_3:71715262-71715281 Msa1121610:intron 45.0%
TGGCATTAACCAAGCAACAG+TGG + chr7_3:71715550-71715569 Msa1121610:intron 45.0%
! TTGGTAACACCACTGTTGCT+TGG - chr7_3:71715562-71715581 None:intergenic 45.0%
AGTACGTTGCGTCATTGAGA+AGG + chr7_3:71715828-71715847 Msa1121610:CDS 45.0%
CCTTGTTACTCCTCGGTAAA+TGG - chr7_3:71715995-71716014 None:intergenic 45.0%
CCATTTACCGAGGAGTAACA+AGG + chr7_3:71715992-71716011 Msa1121610:CDS 45.0%
AACATGGTAGATGGCAAGCT+AGG + chr7_3:71716490-71716509 Msa1121610:CDS 45.0%
GGCAACAAAGATCTCTACCT+AGG + chr7_3:71716528-71716547 Msa1121610:CDS 45.0%
GAGAGCAGCACATTACCAAT+TGG + chr7_3:71716961-71716980 Msa1121610:CDS 45.0%
AGCAGCACATTACCAATTGG+TGG + chr7_3:71716964-71716983 Msa1121610:CDS 45.0%
!! GTTTATGGTGGTGGAGATCA+TGG + chr7_3:71717417-71717436 Msa1121610:CDS 45.0%
CATGGTGGTTATGGAGGAAA+TGG + chr7_3:71717435-71717454 Msa1121610:CDS 45.0%
! CTTGCTGCTTGTGCATGATA+AGG - chr7_3:71717585-71717604 None:intergenic 45.0%
CTTATCATGCACAAGCAGCA+AGG + chr7_3:71717583-71717602 Msa1121610:CDS 45.0%
!! GCAAGTGTTGGAATAGCAGT+TGG - chr7_3:71717663-71717682 None:intergenic 45.0%
GTAGTTCTTGGAGCAAGTGT+TGG - chr7_3:71717675-71717694 None:intergenic 45.0%
AGGAGGACAAAGAGAGACAT+TGG - chr7_3:71717697-71717716 None:intergenic 45.0%
!! AAAATATAATAAAAATAGAA+AGG - chr7_3:71714959-71714978 None:intergenic 5.0%
!! AAAAAAAAATATATACAATA+GGG - chr7_3:71715132-71715151 None:intergenic 5.0%
!! TAAAAAAAAATATATACAAT+AGG - chr7_3:71715133-71715152 None:intergenic 5.0%
! CAAACGGTGGCTTCTCGTTT+TGG + chr7_3:71713816-71713835 Msa1121610:CDS 50.0%
! CGAGCTTTGGTTGTGCTTGT+TGG - chr7_3:71714328-71714347 None:intergenic 50.0%
!! CCGAGGAAGTTTTCGAGCTT+TGG - chr7_3:71714341-71714360 None:intergenic 50.0%
AAGCTCGAAAACTTCCTCGG+TGG + chr7_3:71714341-71714360 Msa1121610:CDS 50.0%
ACCGACCATCATGAATACGG+TGG + chr7_3:71714374-71714393 Msa1121610:CDS 50.0%
! CTGATGAGGTGGAAGGTGTA+AGG - chr7_3:71714417-71714436 None:intergenic 50.0%
TGACTGTGAGCCAGTACTCA+TGG - chr7_3:71714615-71714634 None:intergenic 50.0%
AGTACTACTGCAGTTGTGGG+TGG - chr7_3:71714707-71714726 None:intergenic 50.0%
GGCAGCTAGAGCCTATGATT+TGG + chr7_3:71715405-71715424 Msa1121610:CDS 50.0%
GGTAGATGGCAAGCTAGGAT+TGG + chr7_3:71716495-71716514 Msa1121610:CDS 50.0%
GCTAGGATTGGAAGAGTTGC+AGG + chr7_3:71716507-71716526 Msa1121610:CDS 50.0%
! CGTTTTGCAGCACCACCAAT+TGG - chr7_3:71716979-71716998 None:intergenic 50.0%
GAGCATGGATTCTGCTTCCA+TGG + chr7_3:71717368-71717387 Msa1121610:CDS 50.0%
!! TATGGTGGTGGAGATCATGG+TGG + chr7_3:71717420-71717439 Msa1121610:CDS 50.0%
GGTGGAGATCATGGTGGTTA+TGG + chr7_3:71717426-71717445 Msa1121610:CDS 50.0%
GGAGATCATGGTGGTTATGG+AGG + chr7_3:71717429-71717448 Msa1121610:CDS 50.0%
GGTGGTTATGGAGGAAATGG+TGG + chr7_3:71717438-71717457 Msa1121610:CDS 50.0%
!! CGGTAAAAGAGTGTCCACCG+AGG - chr7_3:71714358-71714377 None:intergenic 55.0%
ACACCTTCCACCTCATCAGC+CGG + chr7_3:71714418-71714437 Msa1121610:CDS 55.0%
CAAGATGCTTCCGGCTGATG+AGG - chr7_3:71714431-71714450 None:intergenic 55.0%
!! CATCAGCCGGAAGCATCTTG+TGG + chr7_3:71714431-71714450 Msa1121610:CDS 55.0%
CAGACTCGCAAAGGAAGGCA+AGG + chr7_3:71715085-71715104 Msa1121610:CDS 55.0%
CGTGGTGCATCCATTTACCG+AGG + chr7_3:71715982-71716001 Msa1121610:CDS 55.0%
CACTCAAGAAGAGGCAGCAG+AGG + chr7_3:71716852-71716871 Msa1121610:CDS 55.0%
! GGCAGCAGAGGCATATGATG+TGG + chr7_3:71716864-71716883 Msa1121610:CDS 55.0%
CTTCCGGCTGATGAGGTGGA+AGG - chr7_3:71714424-71714443 None:intergenic 60.0%
GATGCTTCCGGCTGATGAGG+TGG - chr7_3:71714428-71714447 None:intergenic 60.0%
CCAGCGCCACAAGATGCTTC+CGG - chr7_3:71714440-71714459 None:intergenic 60.0%
! GAAGCATCTTGTGGCGCTGG+TGG + chr7_3:71714440-71714459 Msa1121610:CDS 60.0%
!! TCTTGTGGCGCTGGTGGTGA+CGG + chr7_3:71714446-71714465 Msa1121610:CDS 60.0%
AGAGAGGGGCAGACTCGCAA+AGG + chr7_3:71715076-71715095 Msa1121610:CDS 60.0%
AGGGGCAGACTCGCAAAGGA+AGG + chr7_3:71715080-71715099 Msa1121610:CDS 60.0%
!! CCGGAAGCATCTTGTGGCGC+TGG + chr7_3:71714437-71714456 Msa1121610:CDS 65.0%
!! GGTGACGGTGGTGGTGGTGA+TGG + chr7_3:71714461-71714480 Msa1121610:CDS 65.0%
!! TGTGGCGCTGGTGGTGACGG+TGG + chr7_3:71714449-71714468 Msa1121610:CDS 70.0%
!! GCTGGTGGTGACGGTGGTGG+TGG + chr7_3:71714455-71714474 Msa1121610:CDS 70.0%
!! GGCGCTGGTGGTGACGGTGG+TGG + chr7_3:71714452-71714471 Msa1121610:CDS 75.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 71713750 71717737 71713750 ID=Msa1121610;Name=Msa1121610
chr7_3 mRNA 71713750 71717737 71713750 ID=Msa1121610-mRNA-1;Parent=Msa1121610;Name=Msa1121610-mRNA-1;_AED=0.06;_eAED=0.06;_QI=0|0|0|1|1|1|8|0|692
chr7_3 exon 71713750 71713993 71713750 ID=Msa1121610-mRNA-1:exon:18403;Parent=Msa1121610-mRNA-1
chr7_3 exon 71714249 71714822 71714249 ID=Msa1121610-mRNA-1:exon:18404;Parent=Msa1121610-mRNA-1
chr7_3 exon 71715024 71715106 71715024 ID=Msa1121610-mRNA-1:exon:18405;Parent=Msa1121610-mRNA-1
chr7_3 exon 71715383 71715471 71715383 ID=Msa1121610-mRNA-1:exon:18406;Parent=Msa1121610-mRNA-1
chr7_3 exon 71715776 71715849 71715776 ID=Msa1121610-mRNA-1:exon:18407;Parent=Msa1121610-mRNA-1
chr7_3 exon 71715963 71716013 71715963 ID=Msa1121610-mRNA-1:exon:18408;Parent=Msa1121610-mRNA-1
chr7_3 exon 71716482 71716558 71716482 ID=Msa1121610-mRNA-1:exon:18409;Parent=Msa1121610-mRNA-1
chr7_3 exon 71716851 71717737 71716851 ID=Msa1121610-mRNA-1:exon:18410;Parent=Msa1121610-mRNA-1
chr7_3 CDS 71713750 71713993 71713750 ID=Msa1121610-mRNA-1:cds;Parent=Msa1121610-mRNA-1
chr7_3 CDS 71714249 71714822 71714249 ID=Msa1121610-mRNA-1:cds;Parent=Msa1121610-mRNA-1
chr7_3 CDS 71715024 71715106 71715024 ID=Msa1121610-mRNA-1:cds;Parent=Msa1121610-mRNA-1
chr7_3 CDS 71715383 71715471 71715383 ID=Msa1121610-mRNA-1:cds;Parent=Msa1121610-mRNA-1
chr7_3 CDS 71715776 71715849 71715776 ID=Msa1121610-mRNA-1:cds;Parent=Msa1121610-mRNA-1
chr7_3 CDS 71715963 71716013 71715963 ID=Msa1121610-mRNA-1:cds;Parent=Msa1121610-mRNA-1
chr7_3 CDS 71716482 71716558 71716482 ID=Msa1121610-mRNA-1:cds;Parent=Msa1121610-mRNA-1
chr7_3 CDS 71716851 71717737 71716851 ID=Msa1121610-mRNA-1:cds;Parent=Msa1121610-mRNA-1
Gene Sequence

>Msa1121610

ATGGCCTCTATGAACTTGTTAGGTTTCTCTCTATCTCCACAAGAACAACATCCATCAACTCAAGATCAAACGGTGGCTTCTCGTTTTGGGTTCAACCCTAATGAAATCTCAGGTTCTGATGTTCAAGGAGACCACTGCTATGATCTCTCTTCTCACACAACTCCTCATCATTCACTCAACCTTTCTCATCCTTTTTCCATTTATGAAGCTTTCCACACAAATAACAACATTCACACCACTCAAGATTGGAAGGAGAACTACAACAACCAAAACCTACTATTGAGAACATCATGCATGAACCAAAATATGAACAACAATAACCAACAAGCACAACCAAAGCTCGAAAACTTCCTCGGTGGACACTCTTTTACCGACCATCATGAATACGGTGGTAGCAACTCATACTCTTCCTTACACCTTCCACCTCATCAGCCGGAAGCATCTTGTGGCGCTGGTGGTGACGGTGGTGGTGGTGATGGTAGCACAAGTAACAATAACTCAATAGGTTTATCTATGATAAAAACATGGCTCAGAAACCAACCACCACCAGAAAACAACAACAACAATAACAATGAAAGTGGTGCACGTGTGCAGACACTATCACTTTCCATGAGTACTGGCTCACAGTCAAGTTCATCTGTGCCTCTTCTCAATGCAAATGTGATGAGTGGTGAGATTTCCTCATCGGAAAACAAACAACCACCCACAACTGCAGTAGTACTTGATAGCAACCAAACAAGTGCCGTTGAAAGTGCTGTGCCTAGAAAATCCATTGATACATTTGGACAAAGAACTTCCATTTACCGTGGTGTAACAAGGCATAGATGGACAGGGAGATATGAAGCTCACCTTTGGGACAATAGTTGTAGAAGAGAGGGGCAGACTCGCAAAGGAAGGCAAGGAGGTTATGACAAAGAAGAAAAGGCAGCTAGAGCCTATGATTTGGCAGCACTAAAATATTGGGGAACAACTACTACAACAAATTTTCCAATTAGCCATTATGAAAAAGAAGTGGAAGAAATGAAGCACATGACAAGGCAAGAGTACGTTGCGTCATTGAGAAGGAAAAGTAGTGGTTTTTCTCGTGGTGCATCCATTTACCGAGGAGTAACAAGACATCATCAACATGGTAGATGGCAAGCTAGGATTGGAAGAGTTGCAGGCAACAAAGATCTCTACCTAGGAACTTTCAGCACTCAAGAAGAGGCAGCAGAGGCATATGATGTGGCTGCAATAAAATTCAGAGGACTAAGTGCAGTTACAAACTTTGACATGAGCAGATATGATGTCAAAACCATACTTGAGAGCAGCACATTACCAATTGGTGGTGCTGCAAAACGTTTAAAAGACATGGAGCAAGTTGAATTGAACCATGTGAATGTTGTTGATATTGGCCATAGAACAGAACAAGATCATAGCATCATCAACAACACCTCACATTTAACAGAACAAGCCATGTATGCAGCAACAAATGCATCTAATTGGCAAGCTCTTTCCTTCCAACATCAACAACCACATCATCATTACAATGCCAACAACATGCAGTTACAGAATTATCCTTATGGTACTCAAACTCAAAAGCTTTGGTGCAAACAAGAACAAGATTCTGATGATCATGGTACTTATACTACTGCTACTGATATTCATCAACTACAGTTAGGGAATAATAGTAACAATACTCACAATTTCTTTGGTTTACAAAATATCATGAGCATGGATTCTGCTTCCATGGATAATAGTTCTGGATCTAATTCTGTTGTTTATGGTGGTGGAGATCATGGTGGTTATGGAGGAAATGGTGGATATATGATTCCAATGGCTATTGCAAATGATGGTAACCAAAATCAAAGAAGCAACAATAATTTTGGTGAGAGTGAGATTAAGGGATTTGGTTATGAAAATGTTTTTGGGACTAGCAATGATCCTTATCATGCACAAGCAGCAAGGAACTTGTACTATCAGCCACAACAATTATCTGTTGATCAAGGATCAAATTGGGTTCCAACTGCTATTCCAACACTTGCTCCAAGAACTACCAATGTCTCTCTTTGTCCTCCTTTCACTTTGTTGCATGAATGA
Protein sequence

>Msa1121610

MASMNLLGFSLSPQEQHPSTQDQTVASRFGFNPNEISGSDVQGDHCYDLSSHTTPHHSLNLSHPFSIYEAFHTNNNIHTTQDWKENYNNQNLLLRTSCMNQNMNNNNQQAQPKLENFLGGHSFTDHHEYGGSNSYSSLHLPPHQPEASCGAGGDGGGGDGSTSNNNSIGLSMIKTWLRNQPPPENNNNNNNESGARVQTLSLSMSTGSQSSSSVPLLNANVMSGEISSSENKQPPTTAVVLDSNQTSAVESAVPRKSIDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQTRKGRQGGYDKEEKAARAYDLAALKYWGTTTTTNFPISHYEKEVEEMKHMTRQEYVASLRRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDVAAIKFRGLSAVTNFDMSRYDVKTILESSTLPIGGAAKRLKDMEQVELNHVNVVDIGHRTEQDHSIINNTSHLTEQAMYAATNASNWQALSFQHQQPHHHYNANNMQLQNYPYGTQTQKLWCKQEQDSDDHGTYTTATDIHQLQLGNNSNNTHNFFGLQNIMSMDSASMDNSSGSNSVVYGGGDHGGYGGNGGYMIPMAIANDGNQNQRSNNNFGESEIKGFGYENVFGTSNDPYHAQAARNLYYQPQQLSVDQGSNWVPTAIPTLAPRTTNVSLCPPFTLLHE*