AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0661440

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0661440 MtrunA17_Chr7g0249621 96.839 696 11 4 1 692 1 689 0.0 1390
Msa0661440 MtrunA17_Chr4g0032631 53.140 414 121 10 103 509 51 398 9.28e-130 394
Msa0661440 MtrunA17_Chr2g0328971 65.763 295 73 3 162 455 92 359 2.36e-127 387
Msa0661440 MtrunA17_Chr8g0343851 50.108 463 177 11 5 447 3 431 7.77e-124 380
Msa0661440 MtrunA17_Chr4g0072291 87.310 197 21 2 254 447 149 344 1.28e-121 372
Msa0661440 MtrunA17_Chr3g0135161 68.000 275 68 6 192 460 247 507 8.58e-117 364
Msa0661440 MtrunA17_Chr1g0152161 52.346 405 134 9 65 460 158 512 7.54e-116 362
Msa0661440 MtrunA17_Chr4g0054351 75.234 214 48 2 253 463 299 510 1.41e-106 338
Msa0661440 MtrunA17_Chr5g0412151 81.463 205 34 2 248 449 208 411 3.49e-106 332
Msa0661440 MtrunA17_Chr5g0400871 76.263 198 44 1 260 454 245 442 5.33e-104 328
Msa0661440 MtrunA17_Chr4g0073521 65.979 194 60 2 235 428 24 211 3.12e-84 270
Msa0661440 MtrunA17_Chr6g0452911 59.624 213 74 2 226 428 25 235 5.49e-79 257
Msa0661440 MtrunA17_Chr7g0216601 69.231 169 49 1 263 428 64 232 9.58e-78 254
Msa0661440 MtrunA17_Chr8g0355191 67.630 173 56 0 263 435 54 226 3.46e-76 250
Msa0661440 MtrunA17_Chr8g0367311 74.510 153 38 1 301 453 22 173 6.70e-75 241
Msa0661440 MtrunA17_Chr4g0002011 67.039 179 53 2 253 428 28 203 2.09e-71 235
Msa0661440 MtrunA17_Chr8g0355181 68.072 166 53 0 263 428 55 220 9.16e-70 233
Msa0661440 MtrunA17_Chr8g0362541 60.914 197 63 1 246 428 51 247 6.93e-69 231
Msa0661440 MtrunA17_Chr2g0305821 62.319 138 48 2 236 373 23 156 3.79e-45 158
Msa0661440 MtrunA17_Chr7g0257361 61.832 131 42 2 262 389 55 180 1.16e-39 151
Msa0661440 MtrunA17_Chr4g0053181 52.121 165 65 4 268 429 177 330 3.08e-38 149
Msa0661440 MtrunA17_Chr5g0401891 51.445 173 70 4 268 437 153 314 3.40e-38 149
Msa0661440 MtrunA17_Chr7g0263581 43.719 199 96 4 268 458 140 330 6.40e-38 147
Msa0661440 MtrunA17_Chr4g0030191 45.556 180 82 5 268 444 132 298 2.59e-35 139
Msa0661440 MtrunA17_Chr2g0325911 45.455 165 61 5 268 429 135 273 1.23e-28 119
Msa0661440 MtrunA17_Chr2g0305831 74.576 59 15 0 370 428 1 59 3.12e-24 101
Msa0661440 MtrunA17_Chr3g0126151 43.158 95 53 1 312 406 47 140 1.71e-20 88.2
Msa0661440 MtrunA17_Chr8g0367321 53.165 79 27 2 224 302 125 193 4.78e-20 89.0
Msa0661440 MtrunA17_Chr1g0170761 39.024 123 61 4 264 383 134 245 1.21e-12 70.1
Msa0661440 MtrunA17_Chr5g0432821 44.304 79 43 1 357 435 114 191 6.30e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0661440 AT5G17430.1 52.539 512 152 17 1 504 1 429 2.11e-142 429
Msa0661440 AT5G17430.2 64.809 341 73 7 167 504 71 367 1.48e-134 406
Msa0661440 AT1G51190.1 60.920 348 103 8 112 455 64 382 7.05e-129 393
Msa0661440 AT3G20840.1 72.015 268 56 4 192 455 121 373 4.86e-128 391
Msa0661440 AT5G57390.2 79.018 224 35 3 223 443 49 263 5.90e-121 368
Msa0661440 AT5G57390.1 79.018 224 35 3 223 443 167 381 9.35e-120 369
Msa0661440 AT1G72570.1 57.012 328 106 7 140 446 92 405 1.98e-113 348
Msa0661440 AT4G37750.1 51.880 399 122 10 95 447 92 466 2.69e-110 345
Msa0661440 AT5G10510.2 85.641 195 27 1 255 449 218 411 5.68e-108 338
Msa0661440 AT5G10510.7 84.343 198 27 2 255 449 218 414 8.04e-106 333
Msa0661440 AT5G10510.5 84.343 198 27 2 255 449 218 414 8.04e-106 333
Msa0661440 AT5G10510.1 84.343 198 27 2 255 449 241 437 1.16e-105 333
Msa0661440 AT5G10510.6 84.343 198 27 2 255 449 256 452 1.62e-105 333
Msa0661440 AT5G10510.4 84.343 198 27 2 255 449 256 452 1.62e-105 333
Msa0661440 AT5G65510.4 80.102 196 35 2 255 447 161 355 6.11e-102 319
Msa0661440 AT5G65510.2 80.102 196 35 2 255 447 219 413 6.75e-102 321
Msa0661440 AT5G65510.1 80.102 196 35 2 255 447 219 413 6.75e-102 321
Msa0661440 AT5G10510.3 76.147 218 28 2 255 449 256 472 2.39e-101 323
Msa0661440 AT5G65510.3 84.932 146 19 1 255 397 161 306 1.22e-86 275
Msa0661440 AT3G54320.3 63.736 182 62 2 263 441 61 241 8.72e-67 226
Msa0661440 AT3G54320.1 63.736 182 62 2 263 441 61 241 9.58e-67 226
Msa0661440 AT1G79700.2 69.822 169 48 1 263 428 48 216 2.41e-63 213
Msa0661440 AT1G16060.1 63.077 195 63 3 237 428 34 222 5.69e-63 213
Msa0661440 AT1G79700.1 65.680 169 45 2 263 428 48 206 9.71e-56 192
Msa0661440 AT3G54320.4 69.531 128 39 0 301 428 36 163 1.30e-48 175
Msa0661440 AT3G54320.5 69.531 128 39 0 301 428 36 163 1.30e-48 175
Msa0661440 AT1G79700.4 70.312 128 38 0 301 428 7 134 2.04e-44 159
Msa0661440 AT1G79700.3 70.312 128 38 0 301 428 13 140 2.21e-44 159
Msa0661440 AT1G16060.3 66.418 134 45 0 295 428 19 152 9.07e-43 156
Msa0661440 AT4G36920.1 48.990 198 86 5 247 440 110 296 2.50e-39 150
Msa0661440 AT4G36920.2 48.990 198 86 5 247 440 110 296 2.50e-39 150
Msa0661440 AT2G41710.1 60.606 132 44 2 260 388 63 189 5.27e-39 149
Msa0661440 AT2G41710.4 60.606 132 44 2 260 388 63 189 8.80e-39 150
Msa0661440 AT2G41710.2 58.394 137 44 3 260 388 63 194 9.82e-37 143
Msa0661440 AT2G28550.3 49.390 164 69 4 268 428 154 306 6.31e-36 142
Msa0661440 AT5G67180.2 47.701 174 77 4 268 438 97 259 1.07e-35 137
Msa0661440 AT5G67180.1 47.701 174 77 4 268 438 97 259 5.07e-35 136
Msa0661440 AT5G67180.3 46.512 172 84 3 268 439 97 260 5.37e-35 134
Msa0661440 AT2G41710.3 47.904 167 44 3 260 388 63 224 1.36e-32 132
Msa0661440 AT1G16060.2 71.591 88 25 0 341 428 1 88 1.56e-31 122
Msa0661440 AT1G16060.4 71.591 88 25 0 341 428 1 88 1.56e-31 122
Msa0661440 AT1G16060.6 71.591 88 25 0 341 428 1 88 1.56e-31 122
Msa0661440 AT1G16060.5 71.591 88 25 0 341 428 1 88 1.56e-31 122
Msa0661440 AT3G54320.2 63.366 101 36 1 341 441 1 100 9.99e-31 122
Msa0661440 AT2G28550.4 47.143 140 60 4 268 404 154 282 5.27e-28 115
Msa0661440 AT2G28550.1 45.122 164 61 5 268 428 154 291 5.96e-28 118
Msa0661440 AT5G67180.4 44.366 142 71 3 268 409 97 230 5.63e-26 107
Msa0661440 AT2G28550.2 46.825 126 53 4 268 390 154 268 1.43e-23 101
Msa0661440 AT2G28550.6 46.825 126 53 4 268 390 154 268 1.43e-23 101
Msa0661440 AT2G39250.2 41.071 112 53 3 268 376 109 210 3.17e-21 93.6
Msa0661440 AT2G28550.5 45.312 128 54 2 301 428 14 125 3.87e-21 94.7
Msa0661440 AT2G39250.1 41.071 112 53 3 268 376 109 210 7.21e-21 94.7
Msa0661440 AT5G60120.6 38.509 161 70 6 264 421 157 291 3.89e-17 85.5
Msa0661440 AT5G60120.1 38.509 161 70 6 264 421 157 291 4.21e-17 85.1
Msa0661440 AT5G60120.2 38.509 161 70 6 264 421 157 291 5.77e-17 85.1
Msa0661440 AT5G60120.4 43.411 129 59 4 264 389 157 274 6.83e-17 84.0
Msa0661440 AT5G60120.3 43.411 129 59 4 264 389 157 274 6.83e-17 84.0
Msa0661440 AT5G60120.5 43.411 129 59 4 264 389 157 274 6.83e-17 84.0
Msa0661440 AT1G16060.7 77.193 57 13 0 372 428 10 66 9.21e-17 79.3
Msa0661440 AT3G54990.2 43.396 106 47 3 268 370 123 218 5.48e-15 75.9
Msa0661440 AT3G54990.1 43.396 106 47 3 268 370 123 218 1.27e-14 76.3

Find 150 sgRNAs with CRISPR-Local

Find 248 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATTGTTGCTTCTTTGATTT+TGG 0.129662 4_3:-72933591 None:intergenic
GGATCTAATTCTGTTGTTTA+TGG 0.168865 4_3:+72933496 Msa0661440:CDS
GGTTATTGTTGTTCATATTT+TGG 0.176947 4_3:-72930408 None:intergenic
CAAAGAAGCAACAATAATTT+TGG 0.188537 4_3:+72933598 Msa0661440:CDS
CAAACGGTGGCTTCTCGTTT+TGG 0.188561 4_3:+72929920 Msa0661440:CDS
CCTTGTTACTCCTCGGTAAA+TGG 0.210629 4_3:-72932088 None:intergenic
CCTTGTTACACCACGGTAAA+TGG 0.220419 4_3:-72930905 None:intergenic
ATTTGGCAGCACTAAAATAT+TGG 0.237264 4_3:+72931518 Msa0661440:CDS
AACAATACTCACAATTTCTT+TGG 0.250983 4_3:+72933424 Msa0661440:CDS
CTGTTGATCAAGGATCAAAT+TGG 0.252268 4_3:+72933728 Msa0661440:CDS
TATGATCTTGTTCTGTTCTA+TGG 0.264878 4_3:-72933147 None:intergenic
GGTGGAGATCATGGTGGTTA+TGG 0.278181 4_3:+72933520 Msa0661440:CDS
TCAGAACCTGAGATTTCATT+AGG 0.293320 4_3:-72929950 None:intergenic
AGAGAGACATTGGTAGTTCT+TGG 0.295561 4_3:-72933778 None:intergenic
CAACAACCAAAACCTACTAT+TGG 0.300403 4_3:+72930369 Msa0661440:CDS
TTTGGCAGCACTAAAATATT+GGG 0.305185 4_3:+72931519 Msa0661440:CDS
CAGCAACAAATGCATCTAAT+TGG 0.315390 4_3:+72933215 Msa0661440:CDS
AGAAAATCCATTGATACATT+TGG 0.320046 4_3:+72930871 Msa0661440:CDS
GCTTCCATGGATAATAGTTC+TGG 0.326230 4_3:+72933475 Msa0661440:CDS
ATGGCCTCTATGAACTTGTT+AGG 0.336794 4_3:+72929854 Msa0661440:CDS
GAGAGTGAGATTAAGGGATT+TGG 0.337891 4_3:+72933622 Msa0661440:CDS
TAATGTGCTGCTCTCAAGTA+TGG 0.346258 4_3:-72933047 None:intergenic
CACTTTCAACGGCACTTGTT+TGG 0.354342 4_3:-72930840 None:intergenic
TGTGTGGAAAGCTTCATAAA+TGG 0.358443 4_3:-72930050 None:intergenic
CGAGCTTTGGTTGTGCTTGT+TGG 0.361890 4_3:-72930429 None:intergenic
TGCATTTGTTGCTGCATAGA+TGG 0.367957 4_3:-72933206 None:intergenic
GATATTCATCAACTACAGTT+AGG 0.380988 4_3:+72933391 Msa0661440:CDS
ATGTTCCCAATAGTAGGTTT+TGG 0.383308 4_3:-72930375 None:intergenic
AAAGCTTCATAAATGGAAAA+AGG 0.383369 4_3:-72930043 None:intergenic
GCTAGGATTGGAAGAGTTGC+AGG 0.384571 4_3:+72932598 Msa0661440:CDS
CAGTTACAGAATTATCCTTA+TGG 0.398744 4_3:+72933295 Msa0661440:CDS
ACAAGTAACAATAACTCAAT+AGG 0.403671 4_3:+72930592 Msa0661440:CDS
CTTGCTGCTTGTGCATGATA+AGG 0.405059 4_3:-72933676 None:intergenic
AACAACCAAAACCTACTATT+GGG 0.407661 4_3:+72930370 Msa0661440:CDS
CAGAACCTGAGATTTCATTA+GGG 0.409124 4_3:-72929949 None:intergenic
GAATTGATTGAAGGCATAGA+TGG 0.410587 4_3:+72931107 Msa0661440:intron
CATGTGAATGTTGTTGATAT+TGG 0.412603 4_3:+72933124 Msa0661440:CDS
GGAGATATGAAGCTCACCTT+TGG 0.414893 4_3:+72931134 Msa0661440:CDS
ACCGTTTGATCTTGAGTTGA+TGG 0.416817 4_3:-72929905 None:intergenic
TTTGGTGAGAGTGAGATTAA+GGG 0.417815 4_3:+72933616 Msa0661440:CDS
GGTGACGGTGGTGGTGGTGA+TGG 0.418439 4_3:+72930565 Msa0661440:CDS
GTTTATGGTGGTGGAGATCA+TGG 0.419499 4_3:+72933511 Msa0661440:CDS
GACATCATCAACATGGTAGA+TGG 0.429729 4_3:+72932572 Msa0661440:intron
GTACTCAAACTCAAAAGCTT+TGG 0.432762 4_3:+72933317 Msa0661440:CDS
CATGGTGGTTATGGAGGAAA+TGG 0.438514 4_3:+72933529 Msa0661440:CDS
CCATCATTTGCAATAGCCAT+TGG 0.439632 4_3:-72933565 None:intergenic
AATTCTGTTGTTTATGGTGG+TGG 0.443451 4_3:+72933502 Msa0661440:CDS
GAGATATGAAGCTCACCTTT+GGG 0.446101 4_3:+72931135 Msa0661440:CDS
GGCAGCTAGAGCCTATGATT+TGG 0.446802 4_3:+72931501 Msa0661440:CDS
ACTGGTGGTGACGGTGGTGG+TGG 0.446904 4_3:+72930559 Msa0661440:CDS
TCTTTGTCCAAATGTATCAA+TGG 0.448794 4_3:-72930878 None:intergenic
GGCACTGGTGGTGACGGTGG+TGG 0.459541 4_3:+72930556 Msa0661440:CDS
CCAGTGCCACAGGATGCTTC+CGG 0.465131 4_3:-72930541 None:intergenic
GATTGAAGGCATAGATGGAC+AGG 0.470393 4_3:+72931112 Msa0661440:intron
AGGTTATGACAAAGAAGAAA+AGG 0.471219 4_3:+72931480 Msa0661440:CDS
ATCAAGTACTACTGCAGTTG+TGG 0.479668 4_3:-72930812 None:intergenic
TGTTGATCAAGGATCAAATT+GGG 0.482329 4_3:+72933729 Msa0661440:CDS
TTTGCTTACTGAAAGTTCCT+AGG 0.485677 4_3:-72932636 None:intergenic
CCGGAAGCATCCTGTGGCAC+TGG 0.486540 4_3:+72930541 Msa0661440:CDS
ATTCTGTAACTGCATGTTGT+TGG 0.487352 4_3:-72933284 None:intergenic
GAGAGCAGCACATTACCAAT+TGG 0.487985 4_3:+72933055 Msa0661440:CDS
TTTACCGACCATCATGAATA+CGG 0.492970 4_3:+72930475 Msa0661440:CDS
CCAATGGCTATTGCAAATGA+TGG 0.493694 4_3:+72933565 Msa0661440:CDS
CTGATGAGGTGGAAGGTGTA+AGG 0.495711 4_3:-72930518 None:intergenic
AACAACATTCACACCACTCA+AGG 0.496373 4_3:+72930076 Msa0661440:CDS
TGCATGATGTTCCCAATAGT+AGG 0.502983 4_3:-72930381 None:intergenic
CAGGATGCTTCCGGCTGATG+AGG 0.503669 4_3:-72930532 None:intergenic
ACCGTCACCACCAGTGCCAC+AGG 0.504817 4_3:-72930551 None:intergenic
GATGATGTGGTTGTTGATGT+TGG 0.506938 4_3:-72933252 None:intergenic
GGTAGATGGCAAGCTAGGAT+TGG 0.507927 4_3:+72932586 Msa0661440:CDS
TTTACAAAATATCATGAGCA+TGG 0.510195 4_3:+72933447 Msa0661440:CDS
AGGAGGACAAAGAGAGACAT+TGG 0.511641 4_3:-72933788 None:intergenic
GAGCATGGATTCTGCTTCCA+TGG 0.513611 4_3:+72933462 Msa0661440:CDS
TTCAACCCTAATGAAATCTC+AGG 0.515786 4_3:+72929944 Msa0661440:CDS
GTAGTTCTTGGAGCAAGTGT+TGG 0.515849 4_3:-72933766 None:intergenic
GTTGATGGATGTTGTTCTTG+TGG 0.519936 4_3:-72929890 None:intergenic
TCTAATTCTGTTGTTTATGG+TGG 0.520329 4_3:+72933499 Msa0661440:CDS
TCCATCAACTCAAGATCAAA+CGG 0.521228 4_3:+72929904 Msa0661440:CDS
TCCTGTGGCACTGGTGGTGA+CGG 0.521858 4_3:+72930550 Msa0661440:CDS
CACTCAAGAAGAGGCAGCAG+AGG 0.522745 4_3:+72932946 Msa0661440:CDS
TGACTGTGAGCCAGTACTCA+TGG 0.522920 4_3:-72930716 None:intergenic
CTATCACTTTCCATGAGTAC+TGG 0.523226 4_3:+72930706 Msa0661440:CDS
ATCTCAGGTTCTGATGTTCA+AGG 0.526778 4_3:+72929959 Msa0661440:CDS
GGTGGTTATGGAGGAAATGG+TGG 0.526912 4_3:+72933532 Msa0661440:CDS
ATATTCATCAACTACAGTTA+GGG 0.529923 4_3:+72933392 Msa0661440:CDS
CCATTTACCGTGGTGTAACA+AGG 0.530421 4_3:+72930905 Msa0661440:CDS
CAACAATTATCTGTTGATCA+AGG 0.532166 4_3:+72933718 Msa0661440:CDS
TTGGCATTGTAATGATGATG+TGG 0.537975 4_3:-72933265 None:intergenic
ATGTGGTTGTTGATGTTGGA+AGG 0.539637 4_3:-72933248 None:intergenic
ATCACATTTGCATTGAGAAG+AGG 0.545455 4_3:-72930751 None:intergenic
TCAAGTACTACTGCAGTTGT+GGG 0.549269 4_3:-72930811 None:intergenic
GGAGATCATGGTGGTTATGG+AGG 0.550320 4_3:+72933523 Msa0661440:CDS
GCAAGTGTTGGAATAGCAGT+TGG 0.551281 4_3:-72933754 None:intergenic
GACAATAGTTGTAGAAGAGA+GGG 0.552085 4_3:+72931157 Msa0661440:CDS
AGGGGCAGACTCGCAAAGGA+AGG 0.556032 4_3:+72931176 Msa0661440:CDS
GAACAAGATTCTGATGATCA+TGG 0.556044 4_3:+72933349 Msa0661440:CDS
TGTGAATGTTGTTATTTGTG+TGG 0.561378 4_3:-72930066 None:intergenic
GATGCTTCCGGCTGATGAGG+TGG 0.563493 4_3:-72930529 None:intergenic
AAATGTACCTTGTTACTCCT+CGG 0.570528 4_3:-72932095 None:intergenic
TTCTACAACTATTGTCCCAA+AGG 0.572108 4_3:-72931150 None:intergenic
ACACCTTCCACCTCATCAGC+CGG 0.572285 4_3:+72930522 Msa0661440:CDS
AGATCCAGAACTATTATCCA+TGG 0.572634 4_3:-72933479 None:intergenic
GAAGCATCCTGTGGCACTGG+TGG 0.573567 4_3:+72930544 Msa0661440:CDS
AACATGGTAGATGGCAAGCT+AGG 0.575560 4_3:+72932581 Msa0661440:CDS
TCTAGGCACAGCACTTTCAA+CGG 0.577237 4_3:-72930851 None:intergenic
CATTCATGCAACAAAGTGAA+AGG 0.578679 4_3:-72933808 None:intergenic
GGACAATAGTTGTAGAAGAG+AGG 0.583749 4_3:+72931156 Msa0661440:CDS
AGCAGCACATTACCAATTGG+TGG 0.591768 4_3:+72933058 Msa0661440:CDS
GAGTGGTGAGATTTCCTCAT+CGG 0.592080 4_3:+72930774 Msa0661440:CDS
CCAAAGCTCGAAAACTTCCT+CGG 0.593046 4_3:+72930442 Msa0661440:CDS
AGAGAGGGGCAGACTCGCAA+AGG 0.594516 4_3:+72931172 Msa0661440:CDS
GAAACCTAACAAGTTCATAG+AGG 0.596391 4_3:-72929858 None:intergenic
AACAACAATAACAATGAAAG+CGG 0.600452 4_3:+72930667 Msa0661440:CDS
TATTGGCACAGGAAAAGTAG+TGG 0.604046 4_3:+72932048 Msa0661440:intron
AAGAAATGAAGCACATGACA+AGG 0.607294 4_3:+72931897 Msa0661440:CDS
AGTACGTTGCGTCATTGAGA+AGG 0.611177 4_3:+72931924 Msa0661440:CDS
TTGGCAGCACTAAAATATTG+GGG 0.612951 4_3:+72931520 Msa0661440:CDS
TGCAAAACGTTTAAAAGACA+TGG 0.615292 4_3:+72933084 Msa0661440:CDS
TGTGGCACTGGTGGTGACGG+TGG 0.617161 4_3:+72930553 Msa0661440:CDS
TGCTACCACCGTATTCATGA+TGG 0.619805 4_3:-72930483 None:intergenic
TGATCAACAGATAATTGTTG+TGG 0.624333 4_3:-72933715 None:intergenic
GGCAGCAGAGGCATATGATG+TGG 0.626863 4_3:+72932958 Msa0661440:CDS
CCATTTACCGAGGAGTAACA+AGG 0.628541 4_3:+72932088 Msa0661440:CDS
CTTATCATGCACAAGCAGCA+AGG 0.629083 4_3:+72933677 Msa0661440:CDS
CAATATCAACAACATTCACA+TGG 0.635669 4_3:-72933123 None:intergenic
CTTCCGGCTGATGAGGTGGA+AGG 0.639887 4_3:-72930525 None:intergenic
TGGTGGATATATGATTCCAA+TGG 0.641072 4_3:+72933549 Msa0661440:CDS
CATCAGCCGGAAGCATCCTG+TGG 0.642276 4_3:+72930535 Msa0661440:CDS
GGCTTGTTCTGTTAAATGTG+AGG 0.649955 4_3:-72933185 None:intergenic
CAGACTCGCAAAGGAAGGCA+AGG 0.652221 4_3:+72931181 Msa0661440:CDS
CGTGGTGCATCCATTTACCG+AGG 0.653077 4_3:+72932078 Msa0661440:CDS
TATGGTGGTGGAGATCATGG+TGG 0.659784 4_3:+72933514 Msa0661440:CDS
GAGAAGAGAGATCATAGCAG+TGG 0.660100 4_3:-72929985 None:intergenic
GTGGCTGCAATAAAATTCAG+AGG 0.661589 4_3:+72932977 Msa0661440:CDS
ACAATAGTTGTAGAAGAGAG+GGG 0.663901 4_3:+72931158 Msa0661440:CDS
GAAAGGTTGAGTGAATGATG+AGG 0.665325 4_3:-72930016 None:intergenic
GGCAACAAAGATCTCTACCT+AGG 0.670359 4_3:+72932619 Msa0661440:CDS
TCATGCAACAAAGTGAAAGG+AGG 0.672871 4_3:-72933805 None:intergenic
CTCAATGCAAATGTGATGAG+TGG 0.677659 4_3:+72930757 Msa0661440:CDS
AAGCTCGAAAACTTCCTCGG+TGG 0.682363 4_3:+72930445 Msa0661440:CDS
CAAAGAACTTCCATTTACCG+TGG 0.683820 4_3:+72930895 Msa0661440:CDS
TAGAGAACCTTGTTACACCA+CGG 0.689510 4_3:-72930912 None:intergenic
AGTACTACTGCAGTTGTGGG+TGG 0.690635 4_3:-72930808 None:intergenic
GATTGCAGACATCATCAACA+TGG 0.696140 4_3:+72932565 Msa0661440:intron
ATTGAAGGCATAGATGGACA+GGG 0.699437 4_3:+72931113 Msa0661440:intron
ACCACCGTATTCATGATGGT+CGG 0.701815 4_3:-72930479 None:intergenic
ACCGACCATCATGAATACGG+TGG 0.718644 4_3:+72930478 Msa0661440:CDS
ATCAACTCAAGATCAAACGG+TGG 0.736375 4_3:+72929907 Msa0661440:CDS
GAAAGAAGTGAAACCTTGAG+TGG 0.748092 4_3:-72930089 None:intergenic
CGGTAAAAGAGTGTCCACCG+AGG 0.771614 4_3:-72930459 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATATGATTCTTTAAAATAAT+TGG + chr4_3:72931385-72931404 Msa0661440:intron 10.0%
!!! TTATAGAATATTTATTCTTT+TGG - chr4_3:72932314-72932333 None:intergenic 10.0%
!!! TCTGTTTTTATTTATTTATT+TGG - chr4_3:72932455-72932474 None:intergenic 10.0%
!!! ATCTAAAAATATTTGAGTTT+TGG - chr4_3:72930300-72930319 None:intergenic 15.0%
!!! AACTTTTTATTTTTTCAGAT+TGG + chr4_3:72930335-72930354 Msa0661440:intron 15.0%
!!! TATAAAGTTTTGCATTATAA+GGG - chr4_3:72931783-72931802 None:intergenic 15.0%
!!! ATATAAAGTTTTGCATTATA+AGG - chr4_3:72931784-72931803 None:intergenic 15.0%
!! TGTACATTAATTGATATTAT+TGG + chr4_3:72932031-72932050 Msa0661440:intron 15.0%
!! CAAATATAGAAATAATGTAT+TGG - chr4_3:72932392-72932411 None:intergenic 15.0%
!!! ATTTTTGCTTTATTTATATC+TGG - chr4_3:72932891-72932910 None:intergenic 15.0%
!! AATAGATAAGAAGAAAAAGA+AGG - chr4_3:72930129-72930148 None:intergenic 20.0%
!!! TCTTATCTATTTCTAGTATA+AGG + chr4_3:72930138-72930157 Msa0661440:intron 20.0%
!!! AACTCAAATATTTTTAGATG+CGG + chr4_3:72930301-72930320 Msa0661440:intron 20.0%
!!! TTTTATTTTTTCAGATTGGA+AGG + chr4_3:72930339-72930358 Msa0661440:intron 20.0%
!! GTTTATCTATGATAAAAACA+TGG + chr4_3:72930614-72930633 Msa0661440:CDS 20.0%
!!! AAGTTCTTTTTTCTTCAAAA+TGG - chr4_3:72931030-72931049 None:intergenic 20.0%
!! TATATCATCACAATGAATTA+AGG + chr4_3:72931608-72931627 Msa0661440:intron 20.0%
!! AACTATTACTAATTAGATTC+AGG + chr4_3:72931972-72931991 Msa0661440:intron 20.0%
!! AATTTATGCTCAATAAACTA+AGG - chr4_3:72932000-72932019 None:intergenic 20.0%
!! CTTTACTATTTGTCTTTATT+TGG - chr4_3:72932123-72932142 None:intergenic 20.0%
!!! AATTGCTATTGAAATAACTT+CGG + chr4_3:72932236-72932255 Msa0661440:intron 20.0%
!! ATTAAATTCGATTACAATTG+TGG + chr4_3:72932474-72932493 Msa0661440:intron 20.0%
!! TTTATCTATGTTAAAATGTG+AGG - chr4_3:72932708-72932727 None:intergenic 20.0%
!!! AAGTGATCAACAATTTTTTT+AGG + chr4_3:72932923-72932942 Msa0661440:intron 20.0%
!!! TTTGGTTATGAAAATGTTTT+TGG + chr4_3:72933640-72933659 Msa0661440:CDS 20.0%
!!! TTGGTTATGAAAATGTTTTT+GGG + chr4_3:72933641-72933660 Msa0661440:CDS 20.0%
! AAAGCTTCATAAATGGAAAA+AGG - chr4_3:72930046-72930065 None:intergenic 25.0%
!! TCTAGTATAAGGTTTCATTT+TGG + chr4_3:72930149-72930168 Msa0661440:intron 25.0%
!!! GGTTATTGTTGTTCATATTT+TGG - chr4_3:72930411-72930430 None:intergenic 25.0%
! ACAAGTAACAATAACTCAAT+AGG + chr4_3:72930592-72930611 Msa0661440:CDS 25.0%
!!! TTATTGTTGTTGTTGTTTTC+TGG - chr4_3:72930658-72930677 None:intergenic 25.0%
! AACAACAATAACAATGAAAG+CGG + chr4_3:72930667-72930686 Msa0661440:CDS 25.0%
!!! AATGTATCAATGGATTTTCT+AGG - chr4_3:72930871-72930890 None:intergenic 25.0%
! AGAAAATCCATTGATACATT+TGG + chr4_3:72930871-72930890 Msa0661440:CDS 25.0%
! ATGGCAAAGAAAATACTTAT+AGG - chr4_3:72931011-72931030 None:intergenic 25.0%
!!! GTGTTAAAATTTGTTGATGT+TGG + chr4_3:72931439-72931458 Msa0661440:intron 25.0%
! TTCATTGTGATGATATAAAG+AGG - chr4_3:72931605-72931624 None:intergenic 25.0%
!!! GATTTACTTTTCATTGTACA+TGG - chr4_3:72931719-72931738 None:intergenic 25.0%
! AAATCAATTTCCTCATTTGA+TGG + chr4_3:72931734-72931753 Msa0661440:intron 25.0%
! TTAATTGATATTATTGGCAC+AGG + chr4_3:72932037-72932056 Msa0661440:intron 25.0%
! GTAGACATTTATGATTTCAT+GGG - chr4_3:72932188-72932207 None:intergenic 25.0%
! AGTAGACATTTATGATTTCA+TGG - chr4_3:72932189-72932208 None:intergenic 25.0%
! TTAAATAAATTTGTGCCCTT+AGG + chr4_3:72932272-72932291 Msa0661440:intron 25.0%
! TAAATAAATTTGTGCCCTTA+GGG + chr4_3:72932273-72932292 Msa0661440:intron 25.0%
! CATATATACTACTATTGGAT+TGG - chr4_3:72932770-72932789 None:intergenic 25.0%
! ACATGCATATATACTACTAT+TGG - chr4_3:72932775-72932794 None:intergenic 25.0%
! ATATTCATCAACTACAGTTA+GGG + chr4_3:72933392-72933411 Msa0661440:CDS 25.0%
! AACAATACTCACAATTTCTT+TGG + chr4_3:72933424-72933443 Msa0661440:CDS 25.0%
! TTTACAAAATATCATGAGCA+TGG + chr4_3:72933447-72933466 Msa0661440:CDS 25.0%
!!! TATTGTTGCTTCTTTGATTT+TGG - chr4_3:72933594-72933613 None:intergenic 25.0%
!! CAAAGAAGCAACAATAATTT+TGG + chr4_3:72933598-72933617 Msa0661440:CDS 25.0%
AAATGGAAAAAGGATGAGAA+AGG - chr4_3:72930036-72930055 None:intergenic 30.0%
!! TGTGAATGTTGTTATTTGTG+TGG - chr4_3:72930069-72930088 None:intergenic 30.0%
AAAAAGAAGGTTGGAGTTAT+TGG - chr4_3:72930116-72930135 None:intergenic 30.0%
GATAAGAAGAAAAAGAAGGT+TGG - chr4_3:72930125-72930144 None:intergenic 30.0%
AACAACCAAAACCTACTATT+GGG + chr4_3:72930370-72930389 Msa0661440:CDS 30.0%
TCTTTGTCCAAATGTATCAA+TGG - chr4_3:72930881-72930900 None:intergenic 30.0%
!!! TAGGGTTTTGAATTGATTGA+AGG + chr4_3:72931098-72931117 Msa0661440:intron 30.0%
! GTTGGTTTATGTACTATTGT+AGG + chr4_3:72931457-72931476 Msa0661440:intron 30.0%
AGGTTATGACAAAGAAGAAA+AGG + chr4_3:72931480-72931499 Msa0661440:CDS 30.0%
ATTTGGCAGCACTAAAATAT+TGG + chr4_3:72931518-72931537 Msa0661440:CDS 30.0%
TTTGGCAGCACTAAAATATT+GGG + chr4_3:72931519-72931538 Msa0661440:CDS 30.0%
CAATGAATTAAGGAACATGT+TGG + chr4_3:72931618-72931637 Msa0661440:intron 30.0%
AACAGTGGTGATTCATATAT+TGG + chr4_3:72931690-72931709 Msa0661440:intron 30.0%
!! CGATAACAACTTGTTGATAT+TGG + chr4_3:72931811-72931830 Msa0661440:intron 30.0%
TAGCCATTATGAAAAAGAAG+TGG + chr4_3:72931874-72931893 Msa0661440:CDS 30.0%
!! CTTCCACTTCTTTTTCATAA+TGG - chr4_3:72931880-72931899 None:intergenic 30.0%
CTAATTAGTAATAGTTCGTG+TGG - chr4_3:72931968-72931987 None:intergenic 30.0%
TCTATGTTAAAATGTGAGGT+AGG - chr4_3:72932704-72932723 None:intergenic 30.0%
CAGATTTCAGATGCATATAT+AGG - chr4_3:72932838-72932857 None:intergenic 30.0%
TGCAAAACGTTTAAAAGACA+TGG + chr4_3:72933084-72933103 Msa0661440:CDS 30.0%
CAATATCAACAACATTCACA+TGG - chr4_3:72933126-72933145 None:intergenic 30.0%
CATGTGAATGTTGTTGATAT+TGG + chr4_3:72933124-72933143 Msa0661440:CDS 30.0%
TATGATCTTGTTCTGTTCTA+TGG - chr4_3:72933150-72933169 None:intergenic 30.0%
CAGTTACAGAATTATCCTTA+TGG + chr4_3:72933295-72933314 Msa0661440:CDS 30.0%
!!! TTTTGAGTTTGAGTACCATA+AGG - chr4_3:72933313-72933332 None:intergenic 30.0%
GATATTCATCAACTACAGTT+AGG + chr4_3:72933391-72933410 Msa0661440:CDS 30.0%
! GGATCTAATTCTGTTGTTTA+TGG + chr4_3:72933496-72933515 Msa0661440:CDS 30.0%
! TCTAATTCTGTTGTTTATGG+TGG + chr4_3:72933499-72933518 Msa0661440:CDS 30.0%
TGATCAACAGATAATTGTTG+TGG - chr4_3:72933718-72933737 None:intergenic 30.0%
CAACAATTATCTGTTGATCA+AGG + chr4_3:72933718-72933737 Msa0661440:CDS 30.0%
TGTTGATCAAGGATCAAATT+GGG + chr4_3:72933729-72933748 Msa0661440:CDS 30.0%
GAAACCTAACAAGTTCATAG+AGG - chr4_3:72929861-72929880 None:intergenic 35.0%
TCCATCAACTCAAGATCAAA+CGG + chr4_3:72929904-72929923 Msa0661440:CDS 35.0%
TTCAACCCTAATGAAATCTC+AGG + chr4_3:72929944-72929963 Msa0661440:CDS 35.0%
CAGAACCTGAGATTTCATTA+GGG - chr4_3:72929952-72929971 None:intergenic 35.0%
TCAGAACCTGAGATTTCATT+AGG - chr4_3:72929953-72929972 None:intergenic 35.0%
TGTGTGGAAAGCTTCATAAA+TGG - chr4_3:72930053-72930072 None:intergenic 35.0%
CAACAACCAAAACCTACTAT+TGG + chr4_3:72930369-72930388 Msa0661440:CDS 35.0%
! ATGTTCCCAATAGTAGGTTT+TGG - chr4_3:72930378-72930397 None:intergenic 35.0%
TTTACCGACCATCATGAATA+CGG + chr4_3:72930475-72930494 Msa0661440:CDS 35.0%
!!! TTGTTGTTGTTGTTTTCTGG+TGG - chr4_3:72930655-72930674 None:intergenic 35.0%
ATCACATTTGCATTGAGAAG+AGG - chr4_3:72930754-72930773 None:intergenic 35.0%
! AGATGCATGATGATGAGTTT+AGG + chr4_3:72931079-72931098 Msa0661440:intron 35.0%
! GATGCATGATGATGAGTTTA+GGG + chr4_3:72931080-72931099 Msa0661440:intron 35.0%
! GAATTGATTGAAGGCATAGA+TGG + chr4_3:72931107-72931126 Msa0661440:intron 35.0%
TTCTACAACTATTGTCCCAA+AGG - chr4_3:72931153-72931172 None:intergenic 35.0%
GACAATAGTTGTAGAAGAGA+GGG + chr4_3:72931157-72931176 Msa0661440:CDS 35.0%
ACAATAGTTGTAGAAGAGAG+GGG + chr4_3:72931158-72931177 Msa0661440:CDS 35.0%
ATGAACACCATAGAGGAAAA+GGG - chr4_3:72931324-72931343 None:intergenic 35.0%
TACATTGATGAACACCATAG+AGG - chr4_3:72931331-72931350 None:intergenic 35.0%
ATGGTGTTCATCAATGTACA+TGG + chr4_3:72931333-72931352 Msa0661440:intron 35.0%
!! ACATGGTTTTGCAGTTTACT+TGG + chr4_3:72931350-72931369 Msa0661440:intron 35.0%
!! CATGGTTTTGCAGTTTACTT+GGG + chr4_3:72931351-72931370 Msa0661440:intron 35.0%
GGTTTATGTACTATTGTAGG+AGG + chr4_3:72931460-72931479 Msa0661440:intron 35.0%
! TTTTAGTGCTGCCAAATCAT+AGG - chr4_3:72931515-72931534 None:intergenic 35.0%
TTGGCAGCACTAAAATATTG+GGG + chr4_3:72931520-72931539 Msa0661440:CDS 35.0%
GTAAGTGGAAATTAACTCAC+TGG - chr4_3:72931568-72931587 None:intergenic 35.0%
GAGCAGATTAAAAGAGTAAG+TGG - chr4_3:72931583-72931602 None:intergenic 35.0%
!! CACTGTTGCTTGGTTATTTT+TGG - chr4_3:72931677-72931696 None:intergenic 35.0%
CAAAAATAACCAAGCAACAG+TGG + chr4_3:72931675-72931694 Msa0661440:intron 35.0%
AAGAAATGAAGCACATGACA+AGG + chr4_3:72931897-72931916 Msa0661440:CDS 35.0%
! AAAAGTAGTGGTTTTTCTCG+TGG + chr4_3:72932060-72932079 Msa0661440:CDS 35.0%
AAATGTACCTTGTTACTCCT+CGG - chr4_3:72932098-72932117 None:intergenic 35.0%
!! ATTCCTTAACTTGTGCCTTA+AGG + chr4_3:72932412-72932431 Msa0661440:intron 35.0%
!! TTCCTTAACTTGTGCCTTAA+GGG + chr4_3:72932413-72932432 Msa0661440:intron 35.0%
!! AATGTTAACTTGTGCCCTTA+AGG - chr4_3:72932430-72932449 None:intergenic 35.0%
TTTGCTTACTGAAAGTTCCT+AGG - chr4_3:72932639-72932658 None:intergenic 35.0%
!!! TTTTTTAGGCACTCAAGAAG+AGG + chr4_3:72932937-72932956 Msa0661440:intron 35.0%
CAGCAACAAATGCATCTAAT+TGG + chr4_3:72933215-72933234 Msa0661440:CDS 35.0%
! TTGGCATTGTAATGATGATG+TGG - chr4_3:72933268-72933287 None:intergenic 35.0%
ATTCTGTAACTGCATGTTGT+TGG - chr4_3:72933287-72933306 None:intergenic 35.0%
GTACTCAAACTCAAAAGCTT+TGG + chr4_3:72933317-72933336 Msa0661440:CDS 35.0%
GAACAAGATTCTGATGATCA+TGG + chr4_3:72933349-72933368 Msa0661440:CDS 35.0%
AGATCCAGAACTATTATCCA+TGG - chr4_3:72933482-72933501 None:intergenic 35.0%
! AATTCTGTTGTTTATGGTGG+TGG + chr4_3:72933502-72933521 Msa0661440:CDS 35.0%
! TGGTGGATATATGATTCCAA+TGG + chr4_3:72933549-72933568 Msa0661440:CDS 35.0%
! TTTTGGTGAGAGTGAGATTA+AGG + chr4_3:72933615-72933634 Msa0661440:CDS 35.0%
TTTGGTGAGAGTGAGATTAA+GGG + chr4_3:72933616-72933635 Msa0661440:CDS 35.0%
CTGTTGATCAAGGATCAAAT+TGG + chr4_3:72933728-72933747 Msa0661440:CDS 35.0%
CATTCATGCAACAAAGTGAA+AGG - chr4_3:72933811-72933830 None:intergenic 35.0%
! ATGGCCTCTATGAACTTGTT+AGG + chr4_3:72929854-72929873 Msa0661440:CDS 40.0%
! GTTGATGGATGTTGTTCTTG+TGG - chr4_3:72929893-72929912 None:intergenic 40.0%
!! ACCGTTTGATCTTGAGTTGA+TGG - chr4_3:72929908-72929927 None:intergenic 40.0%
ATCAACTCAAGATCAAACGG+TGG + chr4_3:72929907-72929926 Msa0661440:CDS 40.0%
! ATCTCAGGTTCTGATGTTCA+AGG + chr4_3:72929959-72929978 Msa0661440:CDS 40.0%
GAAAGGTTGAGTGAATGATG+AGG - chr4_3:72930019-72930038 None:intergenic 40.0%
AACAACATTCACACCACTCA+AGG + chr4_3:72930076-72930095 Msa0661440:CDS 40.0%
GAAAGAAGTGAAACCTTGAG+TGG - chr4_3:72930092-72930111 None:intergenic 40.0%
TGCATGATGTTCCCAATAGT+AGG - chr4_3:72930384-72930403 None:intergenic 40.0%
!!! TTGTTGTTGTTTTCTGGTGG+TGG - chr4_3:72930652-72930671 None:intergenic 40.0%
CTATCACTTTCCATGAGTAC+TGG + chr4_3:72930706-72930725 Msa0661440:CDS 40.0%
CTCAATGCAAATGTGATGAG+TGG + chr4_3:72930757-72930776 Msa0661440:CDS 40.0%
!! TGGTTGTTTGTTTTCCGATG+AGG - chr4_3:72930791-72930810 None:intergenic 40.0%
TCAAGTACTACTGCAGTTGT+GGG - chr4_3:72930814-72930833 None:intergenic 40.0%
ATCAAGTACTACTGCAGTTG+TGG - chr4_3:72930815-72930834 None:intergenic 40.0%
CAAAGAACTTCCATTTACCG+TGG + chr4_3:72930895-72930914 Msa0661440:CDS 40.0%
TAGAGAACCTTGTTACACCA+CGG - chr4_3:72930915-72930934 None:intergenic 40.0%
! ATTGAAGGCATAGATGGACA+GGG + chr4_3:72931113-72931132 Msa0661440:intron 40.0%
GAGATATGAAGCTCACCTTT+GGG + chr4_3:72931135-72931154 Msa0661440:CDS 40.0%
GGACAATAGTTGTAGAAGAG+AGG + chr4_3:72931156-72931175 Msa0661440:CDS 40.0%
GATGAACACCATAGAGGAAA+AGG - chr4_3:72931325-72931344 None:intergenic 40.0%
!!! TAAGGAACATGTTGGCCTTT+TGG + chr4_3:72931626-72931645 Msa0661440:intron 40.0%
GTTGCTTGGTTAATGCCAAA+AGG - chr4_3:72931644-72931663 None:intergenic 40.0%
TATGAATCACCACTGTTGCT+TGG - chr4_3:72931687-72931706 None:intergenic 40.0%
CAGACACATTCCATCAAATG+AGG - chr4_3:72931747-72931766 None:intergenic 40.0%
TATTGGCACAGGAAAAGTAG+TGG + chr4_3:72932048-72932067 Msa0661440:intron 40.0%
GTTCTTAACATGTGCCCTAA+GGG - chr4_3:72932290-72932309 None:intergenic 40.0%
AGTTCTTAACATGTGCCCTA+AGG - chr4_3:72932291-72932310 None:intergenic 40.0%
GATTGCAGACATCATCAACA+TGG + chr4_3:72932565-72932584 Msa0661440:intron 40.0%
GACATCATCAACATGGTAGA+TGG + chr4_3:72932572-72932591 Msa0661440:intron 40.0%
GTGGCTGCAATAAAATTCAG+AGG + chr4_3:72932977-72932996 Msa0661440:CDS 40.0%
! TAATGTGCTGCTCTCAAGTA+TGG - chr4_3:72933050-72933069 None:intergenic 40.0%
! GGCTTGTTCTGTTAAATGTG+AGG - chr4_3:72933188-72933207 None:intergenic 40.0%
! TGCATTTGTTGCTGCATAGA+TGG - chr4_3:72933209-72933228 None:intergenic 40.0%
ATGTGGTTGTTGATGTTGGA+AGG - chr4_3:72933251-72933270 None:intergenic 40.0%
GATGATGTGGTTGTTGATGT+TGG - chr4_3:72933255-72933274 None:intergenic 40.0%
GCTTCCATGGATAATAGTTC+TGG + chr4_3:72933475-72933494 Msa0661440:CDS 40.0%
CCATCATTTGCAATAGCCAT+TGG - chr4_3:72933568-72933587 None:intergenic 40.0%
CCAATGGCTATTGCAAATGA+TGG + chr4_3:72933565-72933584 Msa0661440:CDS 40.0%
GAGAGTGAGATTAAGGGATT+TGG + chr4_3:72933622-72933641 Msa0661440:CDS 40.0%
! AGAGAGACATTGGTAGTTCT+TGG - chr4_3:72933781-72933800 None:intergenic 40.0%
TCATGCAACAAAGTGAAAGG+AGG - chr4_3:72933808-72933827 None:intergenic 40.0%
! AAACGGTGGCTTCTCGTTTT+GGG + chr4_3:72929921-72929940 Msa0661440:CDS 45.0%
GAGAAGAGAGATCATAGCAG+TGG - chr4_3:72929988-72930007 None:intergenic 45.0%
!! GTTTTGGTGCAGTGAGATTC+TGG - chr4_3:72930284-72930303 None:intergenic 45.0%
CCAAAGCTCGAAAACTTCCT+CGG + chr4_3:72930442-72930461 Msa0661440:CDS 45.0%
ACCACCGTATTCATGATGGT+CGG - chr4_3:72930482-72930501 None:intergenic 45.0%
TGCTACCACCGTATTCATGA+TGG - chr4_3:72930486-72930505 None:intergenic 45.0%
!!! TGTTGTTTTCTGGTGGTGGT+TGG - chr4_3:72930648-72930667 None:intergenic 45.0%
GAGTGGTGAGATTTCCTCAT+CGG + chr4_3:72930774-72930793 Msa0661440:CDS 45.0%
CACTTTCAACGGCACTTGTT+TGG - chr4_3:72930843-72930862 None:intergenic 45.0%
TCTAGGCACAGCACTTTCAA+CGG - chr4_3:72930854-72930873 None:intergenic 45.0%
CCTTGTTACACCACGGTAAA+TGG - chr4_3:72930908-72930927 None:intergenic 45.0%
CCATTTACCGTGGTGTAACA+AGG + chr4_3:72930905-72930924 Msa0661440:CDS 45.0%
! GATTGAAGGCATAGATGGAC+AGG + chr4_3:72931112-72931131 Msa0661440:intron 45.0%
GGAGATATGAAGCTCACCTT+TGG + chr4_3:72931134-72931153 Msa0661440:CDS 45.0%
! TTGCATGCCCTTTTCCTCTA+TGG + chr4_3:72931314-72931333 Msa0661440:intron 45.0%
TTGCAGTTTACTTGGGTGAG+TGG + chr4_3:72931358-72931377 Msa0661440:intron 45.0%
TGGCATTAACCAAGCAACAG+TGG + chr4_3:72931646-72931665 Msa0661440:intron 45.0%
! TTGGTAACACCACTGTTGCT+TGG - chr4_3:72931658-72931677 None:intergenic 45.0%
AGTACGTTGCGTCATTGAGA+AGG + chr4_3:72931924-72931943 Msa0661440:CDS 45.0%
CCTTGTTACTCCTCGGTAAA+TGG - chr4_3:72932091-72932110 None:intergenic 45.0%
CCATTTACCGAGGAGTAACA+AGG + chr4_3:72932088-72932107 Msa0661440:CDS 45.0%
TGCCCTTAAGGCACAAGTTA+AGG - chr4_3:72932418-72932437 None:intergenic 45.0%
AACATGGTAGATGGCAAGCT+AGG + chr4_3:72932581-72932600 Msa0661440:CDS 45.0%
GGCAACAAAGATCTCTACCT+AGG + chr4_3:72932619-72932638 Msa0661440:CDS 45.0%
GAGAGCAGCACATTACCAAT+TGG + chr4_3:72933055-72933074 Msa0661440:CDS 45.0%
AGCAGCACATTACCAATTGG+TGG + chr4_3:72933058-72933077 Msa0661440:CDS 45.0%
!! GTTTATGGTGGTGGAGATCA+TGG + chr4_3:72933511-72933530 Msa0661440:CDS 45.0%
CATGGTGGTTATGGAGGAAA+TGG + chr4_3:72933529-72933548 Msa0661440:CDS 45.0%
! CTTGCTGCTTGTGCATGATA+AGG - chr4_3:72933679-72933698 None:intergenic 45.0%
CTTATCATGCACAAGCAGCA+AGG + chr4_3:72933677-72933696 Msa0661440:CDS 45.0%
!! GCAAGTGTTGGAATAGCAGT+TGG - chr4_3:72933757-72933776 None:intergenic 45.0%
GTAGTTCTTGGAGCAAGTGT+TGG - chr4_3:72933769-72933788 None:intergenic 45.0%
AGGAGGACAAAGAGAGACAT+TGG - chr4_3:72933791-72933810 None:intergenic 45.0%
!! AAAATATAATAAAAATAGAA+AGG - chr4_3:72931055-72931074 None:intergenic 5.0%
!! AAAAAAAAATATATACAATA+GGG - chr4_3:72931228-72931247 None:intergenic 5.0%
!! TAAAAAAAAATATATACAAT+AGG - chr4_3:72931229-72931248 None:intergenic 5.0%
! CAAACGGTGGCTTCTCGTTT+TGG + chr4_3:72929920-72929939 Msa0661440:CDS 50.0%
TGGTGCAGTGAGATTCTGGT+CGG - chr4_3:72930280-72930299 None:intergenic 50.0%
! CGAGCTTTGGTTGTGCTTGT+TGG - chr4_3:72930432-72930451 None:intergenic 50.0%
!! CCGAGGAAGTTTTCGAGCTT+TGG - chr4_3:72930445-72930464 None:intergenic 50.0%
AAGCTCGAAAACTTCCTCGG+TGG + chr4_3:72930445-72930464 Msa0661440:CDS 50.0%
ACCGACCATCATGAATACGG+TGG + chr4_3:72930478-72930497 Msa0661440:CDS 50.0%
! CTGATGAGGTGGAAGGTGTA+AGG - chr4_3:72930521-72930540 None:intergenic 50.0%
TGACTGTGAGCCAGTACTCA+TGG - chr4_3:72930719-72930738 None:intergenic 50.0%
AGTACTACTGCAGTTGTGGG+TGG - chr4_3:72930811-72930830 None:intergenic 50.0%
GGCAGCTAGAGCCTATGATT+TGG + chr4_3:72931501-72931520 Msa0661440:CDS 50.0%
GGTAGATGGCAAGCTAGGAT+TGG + chr4_3:72932586-72932605 Msa0661440:CDS 50.0%
GCTAGGATTGGAAGAGTTGC+AGG + chr4_3:72932598-72932617 Msa0661440:CDS 50.0%
! CGTTTTGCAGCACCACCAAT+TGG - chr4_3:72933073-72933092 None:intergenic 50.0%
GAGCATGGATTCTGCTTCCA+TGG + chr4_3:72933462-72933481 Msa0661440:CDS 50.0%
!! TATGGTGGTGGAGATCATGG+TGG + chr4_3:72933514-72933533 Msa0661440:CDS 50.0%
GGTGGAGATCATGGTGGTTA+TGG + chr4_3:72933520-72933539 Msa0661440:CDS 50.0%
GGAGATCATGGTGGTTATGG+AGG + chr4_3:72933523-72933542 Msa0661440:CDS 50.0%
GGTGGTTATGGAGGAAATGG+TGG + chr4_3:72933532-72933551 Msa0661440:CDS 50.0%
!! CGGTAAAAGAGTGTCCACCG+AGG - chr4_3:72930462-72930481 None:intergenic 55.0%
ACACCTTCCACCTCATCAGC+CGG + chr4_3:72930522-72930541 Msa0661440:CDS 55.0%
CAGACTCGCAAAGGAAGGCA+AGG + chr4_3:72931181-72931200 Msa0661440:CDS 55.0%
CGTGGTGCATCCATTTACCG+AGG + chr4_3:72932078-72932097 Msa0661440:CDS 55.0%
CACTCAAGAAGAGGCAGCAG+AGG + chr4_3:72932946-72932965 Msa0661440:CDS 55.0%
! GGCAGCAGAGGCATATGATG+TGG + chr4_3:72932958-72932977 Msa0661440:CDS 55.0%
CTTCCGGCTGATGAGGTGGA+AGG - chr4_3:72930528-72930547 None:intergenic 60.0%
GATGCTTCCGGCTGATGAGG+TGG - chr4_3:72930532-72930551 None:intergenic 60.0%
CAGGATGCTTCCGGCTGATG+AGG - chr4_3:72930535-72930554 None:intergenic 60.0%
!! CATCAGCCGGAAGCATCCTG+TGG + chr4_3:72930535-72930554 Msa0661440:CDS 60.0%
CCAGTGCCACAGGATGCTTC+CGG - chr4_3:72930544-72930563 None:intergenic 60.0%
! GAAGCATCCTGTGGCACTGG+TGG + chr4_3:72930544-72930563 Msa0661440:CDS 60.0%
!! TCCTGTGGCACTGGTGGTGA+CGG + chr4_3:72930550-72930569 Msa0661440:CDS 60.0%
AGAGAGGGGCAGACTCGCAA+AGG + chr4_3:72931172-72931191 Msa0661440:CDS 60.0%
AGGGGCAGACTCGCAAAGGA+AGG + chr4_3:72931176-72931195 Msa0661440:CDS 60.0%
!! CCGGAAGCATCCTGTGGCAC+TGG + chr4_3:72930541-72930560 Msa0661440:CDS 65.0%
ACCGTCACCACCAGTGCCAC+AGG - chr4_3:72930554-72930573 None:intergenic 65.0%
!! TGTGGCACTGGTGGTGACGG+TGG + chr4_3:72930553-72930572 Msa0661440:CDS 65.0%
!! ACTGGTGGTGACGGTGGTGG+TGG + chr4_3:72930559-72930578 Msa0661440:CDS 65.0%
!! GGTGACGGTGGTGGTGGTGA+TGG + chr4_3:72930565-72930584 Msa0661440:CDS 65.0%
!! GGCACTGGTGGTGACGGTGG+TGG + chr4_3:72930556-72930575 Msa0661440:CDS 70.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 72929854 72933831 72929854 ID=Msa0661440;Name=Msa0661440
chr4_3 mRNA 72929854 72933831 72929854 ID=Msa0661440-mRNA-1;Parent=Msa0661440;Name=Msa0661440-mRNA-1;_AED=0.05;_eAED=0.06;_QI=0|0|0|1|1|1|8|0|692
chr4_3 exon 72929854 72930097 72929854 ID=Msa0661440-mRNA-1:exon:21875;Parent=Msa0661440-mRNA-1
chr4_3 exon 72930353 72930926 72930353 ID=Msa0661440-mRNA-1:exon:21876;Parent=Msa0661440-mRNA-1
chr4_3 exon 72931120 72931202 72931120 ID=Msa0661440-mRNA-1:exon:21877;Parent=Msa0661440-mRNA-1
chr4_3 exon 72931479 72931567 72931479 ID=Msa0661440-mRNA-1:exon:21878;Parent=Msa0661440-mRNA-1
chr4_3 exon 72931872 72931945 72931872 ID=Msa0661440-mRNA-1:exon:21879;Parent=Msa0661440-mRNA-1
chr4_3 exon 72932059 72932109 72932059 ID=Msa0661440-mRNA-1:exon:21880;Parent=Msa0661440-mRNA-1
chr4_3 exon 72932573 72932649 72932573 ID=Msa0661440-mRNA-1:exon:21881;Parent=Msa0661440-mRNA-1
chr4_3 exon 72932945 72933831 72932945 ID=Msa0661440-mRNA-1:exon:21882;Parent=Msa0661440-mRNA-1
chr4_3 CDS 72929854 72930097 72929854 ID=Msa0661440-mRNA-1:cds;Parent=Msa0661440-mRNA-1
chr4_3 CDS 72930353 72930926 72930353 ID=Msa0661440-mRNA-1:cds;Parent=Msa0661440-mRNA-1
chr4_3 CDS 72931120 72931202 72931120 ID=Msa0661440-mRNA-1:cds;Parent=Msa0661440-mRNA-1
chr4_3 CDS 72931479 72931567 72931479 ID=Msa0661440-mRNA-1:cds;Parent=Msa0661440-mRNA-1
chr4_3 CDS 72931872 72931945 72931872 ID=Msa0661440-mRNA-1:cds;Parent=Msa0661440-mRNA-1
chr4_3 CDS 72932059 72932109 72932059 ID=Msa0661440-mRNA-1:cds;Parent=Msa0661440-mRNA-1
chr4_3 CDS 72932573 72932649 72932573 ID=Msa0661440-mRNA-1:cds;Parent=Msa0661440-mRNA-1
chr4_3 CDS 72932945 72933831 72932945 ID=Msa0661440-mRNA-1:cds;Parent=Msa0661440-mRNA-1
Gene Sequence

>Msa0661440

ATGGCCTCTATGAACTTGTTAGGTTTCTCTCTATCTCCACAAGAACAACATCCATCAACTCAAGATCAAACGGTGGCTTCTCGTTTTGGGTTCAACCCTAATGAAATCTCAGGTTCTGATGTTCAAGGAGACCACTGCTATGATCTCTCTTCTCACACAACTCCTCATCATTCACTCAACCTTTCTCATCCTTTTTCCATTTATGAAGCTTTCCACACAAATAACAACATTCACACCACTCAAGATTGGAAGGAGAACTACAACAACCAAAACCTACTATTGGGAACATCATGCATGAACCAAAATATGAACAACAATAACCAACAAGCACAACCAAAGCTCGAAAACTTCCTCGGTGGACACTCTTTTACCGACCATCATGAATACGGTGGTAGCAACTCATACTCTTCCTTACACCTTCCACCTCATCAGCCGGAAGCATCCTGTGGCACTGGTGGTGACGGTGGTGGTGGTGATGGTAGCACAAGTAACAATAACTCAATAGGTTTATCTATGATAAAAACATGGCTCAGAAACCAACCACCACCAGAAAACAACAACAACAATAACAATGAAAGCGGTGCACGTGTGCAGACACTATCACTTTCCATGAGTACTGGCTCACAGTCAAGTTCATCTGTGCCTCTTCTCAATGCAAATGTGATGAGTGGTGAGATTTCCTCATCGGAAAACAAACAACCACCCACAACTGCAGTAGTACTTGATAGCAACCAAACAAGTGCCGTTGAAAGTGCTGTGCCTAGAAAATCCATTGATACATTTGGACAAAGAACTTCCATTTACCGTGGTGTAACAAGGCATAGATGGACAGGGAGATATGAAGCTCACCTTTGGGACAATAGTTGTAGAAGAGAGGGGCAGACTCGCAAAGGAAGGCAAGGAGGTTATGACAAAGAAGAAAAGGCAGCTAGAGCCTATGATTTGGCAGCACTAAAATATTGGGGAACAACTACTACAACAAATTTTCCAATTAGCCATTATGAAAAAGAAGTGGAAGAAATGAAGCACATGACAAGGCAAGAGTACGTTGCGTCATTGAGAAGGAAAAGTAGTGGTTTTTCTCGTGGTGCATCCATTTACCGAGGAGTAACAAGACATCATCAACATGGTAGATGGCAAGCTAGGATTGGAAGAGTTGCAGGCAACAAAGATCTCTACCTAGGAACTTTCAGCACTCAAGAAGAGGCAGCAGAGGCATATGATGTGGCTGCAATAAAATTCAGAGGACTAAGTGCAGTTACAAACTTTGACATGAGCAGATATGATGTCAAAACCATACTTGAGAGCAGCACATTACCAATTGGTGGTGCTGCAAAACGTTTAAAAGACATGGAGCAAGTTGAATTGAACCATGTGAATGTTGTTGATATTGGCCATAGAACAGAACAAGATCATAGCATCATCAACAACACCTCACATTTAACAGAACAAGCCATCTATGCAGCAACAAATGCATCTAATTGGCAAGCTCTTTCCTTCCAACATCAACAACCACATCATCATTACAATGCCAACAACATGCAGTTACAGAATTATCCTTATGGTACTCAAACTCAAAAGCTTTGGTGCAAACAAGAACAAGATTCTGATGATCATGGTACTTATACTACTGCTACTGATATTCATCAACTACAGTTAGGGAATAATAGTAACAATACTCACAATTTCTTTGGTTTACAAAATATCATGAGCATGGATTCTGCTTCCATGGATAATAGTTCTGGATCTAATTCTGTTGTTTATGGTGGTGGAGATCATGGTGGTTATGGAGGAAATGGTGGATATATGATTCCAATGGCTATTGCAAATGATGGTAACCAAAATCAAAGAAGCAACAATAATTTTGGTGAGAGTGAGATTAAGGGATTTGGTTATGAAAATGTTTTTGGGACTAGCAATGATCCTTATCATGCACAAGCAGCAAGGAACTTGTACTATCAGCCACAACAATTATCTGTTGATCAAGGATCAAATTGGGTTCCAACTGCTATTCCAACACTTGCTCCAAGAACTACCAATGTCTCTCTTTGTCCTCCTTTCACTTTGTTGCATGAATGA
Protein sequence

>Msa0661440

MASMNLLGFSLSPQEQHPSTQDQTVASRFGFNPNEISGSDVQGDHCYDLSSHTTPHHSLNLSHPFSIYEAFHTNNNIHTTQDWKENYNNQNLLLGTSCMNQNMNNNNQQAQPKLENFLGGHSFTDHHEYGGSNSYSSLHLPPHQPEASCGTGGDGGGGDGSTSNNNSIGLSMIKTWLRNQPPPENNNNNNNESGARVQTLSLSMSTGSQSSSSVPLLNANVMSGEISSSENKQPPTTAVVLDSNQTSAVESAVPRKSIDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQTRKGRQGGYDKEEKAARAYDLAALKYWGTTTTTNFPISHYEKEVEEMKHMTRQEYVASLRRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDVAAIKFRGLSAVTNFDMSRYDVKTILESSTLPIGGAAKRLKDMEQVELNHVNVVDIGHRTEQDHSIINNTSHLTEQAIYAATNASNWQALSFQHQQPHHHYNANNMQLQNYPYGTQTQKLWCKQEQDSDDHGTYTTATDIHQLQLGNNSNNTHNFFGLQNIMSMDSASMDNSSGSNSVVYGGGDHGGYGGNGGYMIPMAIANDGNQNQRSNNNFGESEIKGFGYENVFGTSNDPYHAQAARNLYYQPQQLSVDQGSNWVPTAIPTLAPRTTNVSLCPPFTLLHE*