AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1121880


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1121880 MtrunA17_Chr7g0249271 98.515 202 3 0 1 202 1 202 5.21e-150 414
Msa1121880 MtrunA17_Chr5g0438971 61.212 165 64 0 5 169 46 210 1.48e-74 224
Msa1121880 MtrunA17_Chr4g0075511 58.385 161 67 0 9 169 27 187 3.72e-69 209
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1121880 AT3G02800.1 66.497 197 65 1 3 198 1 197 4.41e-98 283
Msa1121880 AT5G16480.1 65.049 206 64 3 1 201 1 203 3.79e-95 276
Msa1121880 AT1G05000.1 64.238 151 54 0 17 167 53 203 2.29e-68 208
Msa1121880 AT4G03960.1 57.419 155 66 0 15 169 27 181 4.09e-63 194
Msa1121880 AT1G05000.2 53.514 185 54 2 17 169 53 237 8.67e-63 195
Msa1121880 AT2G32960.1 48.691 191 64 1 13 169 57 247 1.58e-61 192
Msa1121880 AT5G16480.2 70.238 84 22 1 1 84 1 81 5.72e-35 119
Msa1121880 AT1G05000.3 71.642 67 19 0 17 83 53 119 3.46e-28 104

Find 69 sgRNAs with CRISPR-Local

Find 252 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTTTGCAATGAACCAAAAT+AGG 0.169489 7_3:+71992563 None:intergenic
TGTGAGAAATCACCCTATTT+TGG 0.209389 7_3:-71992576 Msa1121880:CDS
CACATTCAATTGAATAATAA+TGG 0.229943 7_3:-71993802 Msa1121880:exon
ACCCTATCCCGAAGAGAATT+TGG 0.260001 7_3:-71993524 Msa1121880:CDS
AGAGAATTTGGAGTTCTTAA+AGG 0.262009 7_3:-71993512 Msa1121880:CDS
TCTTCAACCATGGAGAAATT+TGG 0.290243 7_3:+71993723 None:intergenic
TGCTCTGAGGGATTCTATTA+TGG 0.312759 7_3:-71992745 Msa1121880:CDS
TTCCAACTCCATTATTTGAT+TGG 0.315457 7_3:-71992157 Msa1121880:three_prime_UTR
CATAGGACAGGTTGCCTTGT+TGG 0.318667 7_3:-71992422 Msa1121880:CDS
AAGAACTCCAAATTCTCTTC+GGG 0.335320 7_3:+71993517 None:intergenic
TTCTCTTCGGGATAGGGTTC+AGG 0.342295 7_3:+71993529 None:intergenic
GCTTCAGAAAGTTGCAGAAT+TGG 0.346755 7_3:-71992397 Msa1121880:CDS
GAGGAGTATCAGCGATTTGC+TGG 0.359295 7_3:-71992356 Msa1121880:CDS
AATTCTACCCAATCAAATAA+TGG 0.371844 7_3:+71992149 None:intergenic
ACATTCAATTGAATAATAAT+GGG 0.372293 7_3:-71993801 Msa1121880:exon
GTTTGCAATGAACCAAAATA+GGG 0.378578 7_3:+71992564 None:intergenic
AAGGGAAAACTGGAAGGTTT+AGG 0.384197 7_3:+71993678 None:intergenic
TAAGAACTCCAAATTCTCTT+CGG 0.390807 7_3:+71993516 None:intergenic
GGTTTGAAGAAAGGGAAAAC+TGG 0.396149 7_3:+71993668 None:intergenic
TCCAAATTCTCTTCGGGATA+GGG 0.404516 7_3:+71993523 None:intergenic
TCCAACTCCATTATTTGATT+GGG 0.415808 7_3:-71992156 Msa1121880:three_prime_UTR
AAGGTTGAGGGTTTGAAGAA+AGG 0.421342 7_3:+71993659 None:intergenic
GTGTTTGTCTTCCGCGTTTG+AGG 0.428171 7_3:-71992375 Msa1121880:CDS
GATTTGCTGGTGTTAAATCC+AGG 0.432715 7_3:-71992343 Msa1121880:CDS
TATACTTCAATGTAGTTGCT+TGG 0.439756 7_3:-71992126 Msa1121880:three_prime_UTR
AGGTTGAGGGTTTGAAGAAA+GGG 0.440281 7_3:+71993660 None:intergenic
GGTTTGACCTCGTAAGTCTT+AGG 0.449851 7_3:-71992295 Msa1121880:CDS
GACTCTGTAAATTCTCATCT+TGG 0.454525 7_3:+71992210 None:intergenic
TGTGCGTGTAAACGAGGATT+CGG 0.455840 7_3:+71993838 None:intergenic
ATCTTTATGCAGCATAGGAC+AGG 0.458017 7_3:-71992434 Msa1121880:intron
CTCCAAATTCTCTTCGGGAT+AGG 0.463257 7_3:+71993522 None:intergenic
TGAGTTATGAGATTAATTGT+AGG 0.467259 7_3:-71991972 Msa1121880:three_prime_UTR
AAATGTTAAATCCGCTGCCC+TGG 0.469169 7_3:+71992325 None:intergenic
CATGATAGAGCGAAGGTTGA+GGG 0.471110 7_3:+71993647 None:intergenic
ATAAATGCAATCTTCAACCA+TGG 0.485613 7_3:+71993713 None:intergenic
TCTTTGAAGCACCTTGGTAC+TGG 0.489070 7_3:+71992249 None:intergenic
CAAATAATGGAGTTGGAACC+CGG 0.489415 7_3:+71992162 None:intergenic
ACCCAATCAAATAATGGAGT+TGG 0.503021 7_3:+71992155 None:intergenic
GCAGCTAAAATGATGTCAGC+CGG 0.526267 7_3:+71992186 None:intergenic
CGGATTTAACATTTATAGAG+AGG 0.527211 7_3:-71992316 Msa1121880:CDS
GGTTCATTGCAAACAAGGAA+AGG 0.528428 7_3:-71992555 Msa1121880:intron
AAAGATCTTTGAAAAGCCTA+AGG 0.535376 7_3:+71992084 None:intergenic
ACATGATAGAGCGAAGGTTG+AGG 0.535379 7_3:+71993646 None:intergenic
CAGCTAAAATGATGTCAGCC+GGG 0.536546 7_3:+71992187 None:intergenic
TCCTCCACCAAATTTCTCCA+TGG 0.537020 7_3:-71993730 Msa1121880:CDS
AGAATCCCTCAGAGCAGGTA+AGG 0.540312 7_3:+71992752 None:intergenic
TCAACCATGGAGAAATTTGG+TGG 0.540768 7_3:+71993726 None:intergenic
AGTTTCCTTACCTGCTCTGA+GGG 0.541367 7_3:-71992757 Msa1121880:CDS
ATAATAGAATCCCTCAGAGC+AGG 0.553968 7_3:+71992747 None:intergenic
ATTTGGAATCGAGGGCAAAA+CGG 0.561591 7_3:-71993467 Msa1121880:intron
ATGAGAATTTACAGAGTCCC+CGG 0.562012 7_3:-71992205 Msa1121880:CDS
TGCGCTTCTTTGAAGCACCT+TGG 0.567421 7_3:+71992243 None:intergenic
TGAAGAAAGGGAAAACTGGA+AGG 0.573241 7_3:+71993672 None:intergenic
TCTGAGGGATTCTATTATGG+AGG 0.578245 7_3:-71992742 Msa1121880:CDS
GACTGAACATTATTATCCTT+AGG 0.581387 7_3:-71992100 Msa1121880:three_prime_UTR
TGGTGTTAAATCCAGGGCAG+CGG 0.584305 7_3:-71992336 Msa1121880:CDS
ATTTGCTGGTGTTAAATCCA+GGG 0.594403 7_3:-71992342 Msa1121880:CDS
ACCATGGAGAAATTTGGTGG+AGG 0.596016 7_3:+71993729 None:intergenic
ACTTTCTGAAGCAGCCAACA+AGG 0.599002 7_3:+71992408 None:intergenic
AAGGTGCTTCAAAGAAGCGC+AGG 0.614369 7_3:-71992241 Msa1121880:CDS
AAGTTTCCTTACCTGCTCTG+AGG 0.620871 7_3:-71992758 Msa1121880:CDS
AAACTAACATGATAGAGCGA+AGG 0.636224 7_3:+71993640 None:intergenic
CATTCAATTGAATAATAATG+GGG 0.641084 7_3:-71993800 Msa1121880:exon
AACATCTCACACAGATACAG+TGG 0.671663 7_3:-71992026 Msa1121880:three_prime_UTR
AGCTAAAATGATGTCAGCCG+GGG 0.678842 7_3:+71992188 None:intergenic
AGCATCATCTACCAGTACCA+AGG 0.693429 7_3:-71992260 Msa1121880:CDS
TGTTTGTGTGCGTGTAAACG+AGG 0.696253 7_3:+71993832 None:intergenic
GACACTGCCTAAGACTTACG+AGG 0.727290 7_3:+71992288 None:intergenic
TCGCTGATACTCCTCAAACG+CGG 0.736711 7_3:+71992364 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATAAAAACATAAAATTAGA+AGG + chr7_3:71993356-71993375 None:intergenic 10.0%
!! TATAAAAACATAAAATTAGA+AGG + chr7_3:71993356-71993375 None:intergenic 10.0%
!! ACATTCAATTGAATAATAAT+GGG - chr7_3:71992043-71992062 Msa1121880:three_prime_UTR 15.0%
!!! CACTTTTTTACTTTTAATTT+TGG - chr7_3:71992528-71992547 Msa1121880:intron 15.0%
!! CATTAGAATTATAGAATTAT+AGG + chr7_3:71993380-71993399 None:intergenic 15.0%
!!! ACATATATTTTTTTATTCAG+CGG - chr7_3:71993848-71993867 Msa1121880:five_prime_UTR 15.0%
!! ACATTCAATTGAATAATAAT+GGG - chr7_3:71992043-71992062 Msa1121880:three_prime_UTR 15.0%
!!! CACTTTTTTACTTTTAATTT+TGG - chr7_3:71992528-71992547 Msa1121880:intron 15.0%
!! CATTAGAATTATAGAATTAT+AGG + chr7_3:71993380-71993399 None:intergenic 15.0%
!!! ACATATATTTTTTTATTCAG+CGG - chr7_3:71993848-71993867 Msa1121880:five_prime_UTR 15.0%
!! CACATTCAATTGAATAATAA+TGG - chr7_3:71992042-71992061 Msa1121880:three_prime_UTR 20.0%
!! CATTCAATTGAATAATAATG+GGG - chr7_3:71992044-71992063 Msa1121880:three_prime_UTR 20.0%
!!! AAAAAGAACGATTTTTGAAA+GGG + chr7_3:71992239-71992258 None:intergenic 20.0%
!!! AAAAAAGAACGATTTTTGAA+AGG + chr7_3:71992240-71992259 None:intergenic 20.0%
!!! AATATTCGTCTTTTTCAATT+TGG - chr7_3:71992360-71992379 Msa1121880:CDS 20.0%
!!! ATTTGAATGTTGTTTAAGTT+TGG - chr7_3:71992448-71992467 Msa1121880:intron 20.0%
!!! TGTTTGTAACTTTATTCTTT+TGG - chr7_3:71992565-71992584 Msa1121880:CDS 20.0%
!!! TAAATTTTCCTTAAAAAGTC+CGG + chr7_3:71992613-71992632 None:intergenic 20.0%
!! TTTGAAGGAAATTAGATTAT+GGG - chr7_3:71992684-71992703 Msa1121880:intron 20.0%
!! CACATTCAATTGAATAATAA+TGG - chr7_3:71992042-71992061 Msa1121880:three_prime_UTR 20.0%
!! CATTCAATTGAATAATAATG+GGG - chr7_3:71992044-71992063 Msa1121880:three_prime_UTR 20.0%
!!! AAAAAGAACGATTTTTGAAA+GGG + chr7_3:71992239-71992258 None:intergenic 20.0%
!!! AAAAAAGAACGATTTTTGAA+AGG + chr7_3:71992240-71992259 None:intergenic 20.0%
!!! AATATTCGTCTTTTTCAATT+TGG - chr7_3:71992360-71992379 Msa1121880:CDS 20.0%
!!! ATTTGAATGTTGTTTAAGTT+TGG - chr7_3:71992448-71992467 Msa1121880:intron 20.0%
!!! TGTTTGTAACTTTATTCTTT+TGG - chr7_3:71992565-71992584 Msa1121880:CDS 20.0%
!!! TAAATTTTCCTTAAAAAGTC+CGG + chr7_3:71992613-71992632 None:intergenic 20.0%
!! TTTGAAGGAAATTAGATTAT+GGG - chr7_3:71992684-71992703 Msa1121880:intron 20.0%
!! GTTTGGTGATTAATTGAAAT+AGG - chr7_3:71992465-71992484 Msa1121880:intron 25.0%
! GTTTGAAGGAAATTAGATTA+TGG - chr7_3:71992683-71992702 Msa1121880:intron 25.0%
! TTAGATTATGGGTTTATGTT+TGG - chr7_3:71992695-71992714 Msa1121880:intron 25.0%
! ACTAGTTAAGAAAACTAATC+CGG - chr7_3:71992769-71992788 Msa1121880:intron 25.0%
! GGTTTATCATAAATATGAGT+TGG - chr7_3:71992936-71992955 Msa1121880:intron 25.0%
! GTCATTAACTCAAATAATGA+AGG + chr7_3:71993040-71993059 None:intergenic 25.0%
! ATGTATTATTTGCAATTTGC+AGG - chr7_3:71993063-71993082 Msa1121880:intron 25.0%
! TTGCAAATTTATCATCTCAT+TGG - chr7_3:71993323-71993342 Msa1121880:intron 25.0%
! AATTCTACCCAATCAAATAA+TGG + chr7_3:71993698-71993717 None:intergenic 25.0%
! TGAGTTATGAGATTAATTGT+AGG - chr7_3:71993872-71993891 Msa1121880:five_prime_UTR 25.0%
!! GTTTGGTGATTAATTGAAAT+AGG - chr7_3:71992465-71992484 Msa1121880:intron 25.0%
! GTTTGAAGGAAATTAGATTA+TGG - chr7_3:71992683-71992702 Msa1121880:intron 25.0%
! TTAGATTATGGGTTTATGTT+TGG - chr7_3:71992695-71992714 Msa1121880:intron 25.0%
! ACTAGTTAAGAAAACTAATC+CGG - chr7_3:71992769-71992788 Msa1121880:intron 25.0%
! GGTTTATCATAAATATGAGT+TGG - chr7_3:71992936-71992955 Msa1121880:intron 25.0%
! GTCATTAACTCAAATAATGA+AGG + chr7_3:71993040-71993059 None:intergenic 25.0%
! ATGTATTATTTGCAATTTGC+AGG - chr7_3:71993063-71993082 Msa1121880:intron 25.0%
! TTGCAAATTTATCATCTCAT+TGG - chr7_3:71993323-71993342 Msa1121880:intron 25.0%
! AATTCTACCCAATCAAATAA+TGG + chr7_3:71993698-71993717 None:intergenic 25.0%
! TGAGTTATGAGATTAATTGT+AGG - chr7_3:71993872-71993891 Msa1121880:five_prime_UTR 25.0%
ATAAATGCAATCTTCAACCA+TGG + chr7_3:71992134-71992153 None:intergenic 30.0%
TAAGAACTCCAAATTCTCTT+CGG + chr7_3:71992331-71992350 None:intergenic 30.0%
! AGAGAATTTGGAGTTCTTAA+AGG - chr7_3:71992332-71992351 Msa1121880:CDS 30.0%
!!! TCTTTTTCAATTTGGAATCG+AGG - chr7_3:71992368-71992387 Msa1121880:CDS 30.0%
!!! CTTTTTCAATTTGGAATCGA+GGG - chr7_3:71992369-71992388 Msa1121880:CDS 30.0%
TAGTGTGATTGTTTGTTTGA+AGG - chr7_3:71992669-71992688 Msa1121880:intron 30.0%
ATTATGGGTTTATGTTTGGT+TGG - chr7_3:71992699-71992718 Msa1121880:intron 30.0%
! TTATGTTTGGTTGGCTATTT+AGG - chr7_3:71992708-71992727 Msa1121880:intron 30.0%
! TATGTTTGGTTGGCTATTTA+GGG - chr7_3:71992709-71992728 Msa1121880:intron 30.0%
! TTTTCTTAACTAGTGCTCAT+TGG - chr7_3:71992873-71992892 Msa1121880:intron 30.0%
TTTAGTTATTGTCGTGTTTG+TGG - chr7_3:71992960-71992979 Msa1121880:intron 30.0%
! ATTATGAAGTTTGAAGCATG+TGG - chr7_3:71992986-71993005 Msa1121880:intron 30.0%
! TCTGAAAGCACACAAAATTA+AGG + chr7_3:71993248-71993267 None:intergenic 30.0%
GTTTGCAATGAACCAAAATA+GGG + chr7_3:71993283-71993302 None:intergenic 30.0%
TGTTTGCAATGAACCAAAAT+AGG + chr7_3:71993284-71993303 None:intergenic 30.0%
!!! ATTTTGGTTCATTGCAAACA+AGG - chr7_3:71993284-71993303 Msa1121880:intron 30.0%
! TTTTCATCTTTATGCAGCAT+AGG - chr7_3:71993405-71993424 Msa1121880:intron 30.0%
CGGATTTAACATTTATAGAG+AGG - chr7_3:71993528-71993547 Msa1121880:CDS 30.0%
TTCCAACTCCATTATTTGAT+TGG - chr7_3:71993687-71993706 Msa1121880:CDS 30.0%
TCCAACTCCATTATTTGATT+GGG - chr7_3:71993688-71993707 Msa1121880:CDS 30.0%
TATACTTCAATGTAGTTGCT+TGG - chr7_3:71993718-71993737 Msa1121880:CDS 30.0%
GACTGAACATTATTATCCTT+AGG - chr7_3:71993744-71993763 Msa1121880:CDS 30.0%
! AAAGATCTTTGAAAAGCCTA+AGG + chr7_3:71993763-71993782 None:intergenic 30.0%
ATAAATGCAATCTTCAACCA+TGG + chr7_3:71992134-71992153 None:intergenic 30.0%
TAAGAACTCCAAATTCTCTT+CGG + chr7_3:71992331-71992350 None:intergenic 30.0%
! AGAGAATTTGGAGTTCTTAA+AGG - chr7_3:71992332-71992351 Msa1121880:CDS 30.0%
!!! TCTTTTTCAATTTGGAATCG+AGG - chr7_3:71992368-71992387 Msa1121880:CDS 30.0%
!!! CTTTTTCAATTTGGAATCGA+GGG - chr7_3:71992369-71992388 Msa1121880:CDS 30.0%
TAGTGTGATTGTTTGTTTGA+AGG - chr7_3:71992669-71992688 Msa1121880:intron 30.0%
ATTATGGGTTTATGTTTGGT+TGG - chr7_3:71992699-71992718 Msa1121880:intron 30.0%
! TTATGTTTGGTTGGCTATTT+AGG - chr7_3:71992708-71992727 Msa1121880:intron 30.0%
! TATGTTTGGTTGGCTATTTA+GGG - chr7_3:71992709-71992728 Msa1121880:intron 30.0%
! TTTTCTTAACTAGTGCTCAT+TGG - chr7_3:71992873-71992892 Msa1121880:intron 30.0%
TTTAGTTATTGTCGTGTTTG+TGG - chr7_3:71992960-71992979 Msa1121880:intron 30.0%
! ATTATGAAGTTTGAAGCATG+TGG - chr7_3:71992986-71993005 Msa1121880:intron 30.0%
! TCTGAAAGCACACAAAATTA+AGG + chr7_3:71993248-71993267 None:intergenic 30.0%
GTTTGCAATGAACCAAAATA+GGG + chr7_3:71993283-71993302 None:intergenic 30.0%
TGTTTGCAATGAACCAAAAT+AGG + chr7_3:71993284-71993303 None:intergenic 30.0%
!!! ATTTTGGTTCATTGCAAACA+AGG - chr7_3:71993284-71993303 Msa1121880:intron 30.0%
! TTTTCATCTTTATGCAGCAT+AGG - chr7_3:71993405-71993424 Msa1121880:intron 30.0%
CGGATTTAACATTTATAGAG+AGG - chr7_3:71993528-71993547 Msa1121880:CDS 30.0%
TTCCAACTCCATTATTTGAT+TGG - chr7_3:71993687-71993706 Msa1121880:CDS 30.0%
TCCAACTCCATTATTTGATT+GGG - chr7_3:71993688-71993707 Msa1121880:CDS 30.0%
TATACTTCAATGTAGTTGCT+TGG - chr7_3:71993718-71993737 Msa1121880:CDS 30.0%
GACTGAACATTATTATCCTT+AGG - chr7_3:71993744-71993763 Msa1121880:CDS 30.0%
! AAAGATCTTTGAAAAGCCTA+AGG + chr7_3:71993763-71993782 None:intergenic 30.0%
TCTTCAACCATGGAGAAATT+TGG + chr7_3:71992124-71992143 None:intergenic 35.0%
AAACTAACATGATAGAGCGA+AGG + chr7_3:71992207-71992226 None:intergenic 35.0%
AAGAACTCCAAATTCTCTTC+GGG + chr7_3:71992330-71992349 None:intergenic 35.0%
AAATTTCCCTTTCCTTTACC+GGG + chr7_3:71992914-71992933 None:intergenic 35.0%
CAAATTTCCCTTTCCTTTAC+CGG + chr7_3:71992915-71992934 None:intergenic 35.0%
GGTAAAGGAAAGGGAAATTT+GGG - chr7_3:71992914-71992933 Msa1121880:intron 35.0%
GTAAAGGAAAGGGAAATTTG+GGG - chr7_3:71992915-71992934 Msa1121880:intron 35.0%
!!! GAGGCTTTGAAAGTTTTAGT+TGG - chr7_3:71993121-71993140 Msa1121880:intron 35.0%
! TGTGAGAAATCACCCTATTT+TGG - chr7_3:71993268-71993287 Msa1121880:intron 35.0%
! ATTTGCTGGTGTTAAATCCA+GGG - chr7_3:71993502-71993521 Msa1121880:CDS 35.0%
GACTCTGTAAATTCTCATCT+TGG + chr7_3:71993637-71993656 None:intergenic 35.0%
! ACCCAATCAAATAATGGAGT+TGG + chr7_3:71993692-71993711 None:intergenic 35.0%
TCTTCAACCATGGAGAAATT+TGG + chr7_3:71992124-71992143 None:intergenic 35.0%
AAACTAACATGATAGAGCGA+AGG + chr7_3:71992207-71992226 None:intergenic 35.0%
AAGAACTCCAAATTCTCTTC+GGG + chr7_3:71992330-71992349 None:intergenic 35.0%
AAATTTCCCTTTCCTTTACC+GGG + chr7_3:71992914-71992933 None:intergenic 35.0%
CAAATTTCCCTTTCCTTTAC+CGG + chr7_3:71992915-71992934 None:intergenic 35.0%
GGTAAAGGAAAGGGAAATTT+GGG - chr7_3:71992914-71992933 Msa1121880:intron 35.0%
GTAAAGGAAAGGGAAATTTG+GGG - chr7_3:71992915-71992934 Msa1121880:intron 35.0%
!!! GAGGCTTTGAAAGTTTTAGT+TGG - chr7_3:71993121-71993140 Msa1121880:intron 35.0%
! TGTGAGAAATCACCCTATTT+TGG - chr7_3:71993268-71993287 Msa1121880:intron 35.0%
! ATTTGCTGGTGTTAAATCCA+GGG - chr7_3:71993502-71993521 Msa1121880:CDS 35.0%
GACTCTGTAAATTCTCATCT+TGG + chr7_3:71993637-71993656 None:intergenic 35.0%
! ACCCAATCAAATAATGGAGT+TGG + chr7_3:71993692-71993711 None:intergenic 35.0%
TCAACCATGGAGAAATTTGG+TGG + chr7_3:71992121-71992140 None:intergenic 40.0%
AAGGGAAAACTGGAAGGTTT+AGG + chr7_3:71992169-71992188 None:intergenic 40.0%
TGAAGAAAGGGAAAACTGGA+AGG + chr7_3:71992175-71992194 None:intergenic 40.0%
GGTTTGAAGAAAGGGAAAAC+TGG + chr7_3:71992179-71992198 None:intergenic 40.0%
AGGTTGAGGGTTTGAAGAAA+GGG + chr7_3:71992187-71992206 None:intergenic 40.0%
AAGGTTGAGGGTTTGAAGAA+AGG + chr7_3:71992188-71992207 None:intergenic 40.0%
TCCAAATTCTCTTCGGGATA+GGG + chr7_3:71992324-71992343 None:intergenic 40.0%
! ATTTGGAATCGAGGGCAAAA+CGG - chr7_3:71992377-71992396 Msa1121880:CDS 40.0%
! CTTGTCTTTTATCTTCGTGC+CGG - chr7_3:71992591-71992610 Msa1121880:intron 40.0%
! TGGTTGGCTATTTAGGGTTT+AGG - chr7_3:71992715-71992734 Msa1121880:intron 40.0%
! GGTTGGCTATTTAGGGTTTA+GGG - chr7_3:71992716-71992735 Msa1121880:intron 40.0%
! AATGCTAAAAAGTGCACCTG+AGG - chr7_3:71992745-71992764 Msa1121880:CDS 40.0%
! GTTTTCTTAACTAGTGCCTC+AGG + chr7_3:71992764-71992783 None:intergenic 40.0%
ATCCGGAAATATTCACGAAG+TGG - chr7_3:71992786-71992805 Msa1121880:intron 40.0%
CACCACTTCGTGAATATTTC+CGG + chr7_3:71992791-71992810 None:intergenic 40.0%
ATTCACGAAGTGGTGAAAAG+TGG - chr7_3:71992796-71992815 Msa1121880:intron 40.0%
TGGTACAAGTTAACATGACC+CGG - chr7_3:71992893-71992912 Msa1121880:intron 40.0%
AAGTTAACATGACCCGGTAA+AGG - chr7_3:71992899-71992918 Msa1121880:intron 40.0%
CGGTAAAGGAAAGGGAAATT+TGG - chr7_3:71992913-71992932 Msa1121880:intron 40.0%
AGTTATTGTCGTGTTTGTGG+AGG - chr7_3:71992963-71992982 Msa1121880:intron 40.0%
AGGCAGACAAAACCAAAACT+CGG + chr7_3:71993020-71993039 None:intergenic 40.0%
ATAATAGAATCCCTCAGAGC+AGG + chr7_3:71993100-71993119 None:intergenic 40.0%
!! TGCTCTGAGGGATTCTATTA+TGG - chr7_3:71993099-71993118 Msa1121880:intron 40.0%
TCTGAGGGATTCTATTATGG+AGG - chr7_3:71993102-71993121 Msa1121880:intron 40.0%
GGTTCATTGCAAACAAGGAA+AGG - chr7_3:71993289-71993308 Msa1121880:intron 40.0%
ATCTTTATGCAGCATAGGAC+AGG - chr7_3:71993410-71993429 Msa1121880:intron 40.0%
GCTTCAGAAAGTTGCAGAAT+TGG - chr7_3:71993447-71993466 Msa1121880:intron 40.0%
!! GATTTGCTGGTGTTAAATCC+AGG - chr7_3:71993501-71993520 Msa1121880:CDS 40.0%
ATGAGAATTTACAGAGTCCC+CGG - chr7_3:71993639-71993658 Msa1121880:intron 40.0%
!!! TGACATCATTTTAGCTGCAC+CGG - chr7_3:71993663-71993682 Msa1121880:CDS 40.0%
! CAAATAATGGAGTTGGAACC+CGG + chr7_3:71993685-71993704 None:intergenic 40.0%
AACATCTCACACAGATACAG+TGG - chr7_3:71993818-71993837 Msa1121880:five_prime_UTR 40.0%
TCAACCATGGAGAAATTTGG+TGG + chr7_3:71992121-71992140 None:intergenic 40.0%
AAGGGAAAACTGGAAGGTTT+AGG + chr7_3:71992169-71992188 None:intergenic 40.0%
TGAAGAAAGGGAAAACTGGA+AGG + chr7_3:71992175-71992194 None:intergenic 40.0%
GGTTTGAAGAAAGGGAAAAC+TGG + chr7_3:71992179-71992198 None:intergenic 40.0%
AGGTTGAGGGTTTGAAGAAA+GGG + chr7_3:71992187-71992206 None:intergenic 40.0%
AAGGTTGAGGGTTTGAAGAA+AGG + chr7_3:71992188-71992207 None:intergenic 40.0%
TCCAAATTCTCTTCGGGATA+GGG + chr7_3:71992324-71992343 None:intergenic 40.0%
! ATTTGGAATCGAGGGCAAAA+CGG - chr7_3:71992377-71992396 Msa1121880:CDS 40.0%
! CTTGTCTTTTATCTTCGTGC+CGG - chr7_3:71992591-71992610 Msa1121880:intron 40.0%
! TGGTTGGCTATTTAGGGTTT+AGG - chr7_3:71992715-71992734 Msa1121880:intron 40.0%
! GGTTGGCTATTTAGGGTTTA+GGG - chr7_3:71992716-71992735 Msa1121880:intron 40.0%
! AATGCTAAAAAGTGCACCTG+AGG - chr7_3:71992745-71992764 Msa1121880:CDS 40.0%
! GTTTTCTTAACTAGTGCCTC+AGG + chr7_3:71992764-71992783 None:intergenic 40.0%
ATCCGGAAATATTCACGAAG+TGG - chr7_3:71992786-71992805 Msa1121880:intron 40.0%
CACCACTTCGTGAATATTTC+CGG + chr7_3:71992791-71992810 None:intergenic 40.0%
ATTCACGAAGTGGTGAAAAG+TGG - chr7_3:71992796-71992815 Msa1121880:intron 40.0%
TGGTACAAGTTAACATGACC+CGG - chr7_3:71992893-71992912 Msa1121880:intron 40.0%
AAGTTAACATGACCCGGTAA+AGG - chr7_3:71992899-71992918 Msa1121880:intron 40.0%
CGGTAAAGGAAAGGGAAATT+TGG - chr7_3:71992913-71992932 Msa1121880:intron 40.0%
AGTTATTGTCGTGTTTGTGG+AGG - chr7_3:71992963-71992982 Msa1121880:intron 40.0%
AGGCAGACAAAACCAAAACT+CGG + chr7_3:71993020-71993039 None:intergenic 40.0%
ATAATAGAATCCCTCAGAGC+AGG + chr7_3:71993100-71993119 None:intergenic 40.0%
!! TGCTCTGAGGGATTCTATTA+TGG - chr7_3:71993099-71993118 Msa1121880:intron 40.0%
TCTGAGGGATTCTATTATGG+AGG - chr7_3:71993102-71993121 Msa1121880:intron 40.0%
GGTTCATTGCAAACAAGGAA+AGG - chr7_3:71993289-71993308 Msa1121880:intron 40.0%
ATCTTTATGCAGCATAGGAC+AGG - chr7_3:71993410-71993429 Msa1121880:intron 40.0%
GCTTCAGAAAGTTGCAGAAT+TGG - chr7_3:71993447-71993466 Msa1121880:intron 40.0%
!! GATTTGCTGGTGTTAAATCC+AGG - chr7_3:71993501-71993520 Msa1121880:CDS 40.0%
ATGAGAATTTACAGAGTCCC+CGG - chr7_3:71993639-71993658 Msa1121880:intron 40.0%
!!! TGACATCATTTTAGCTGCAC+CGG - chr7_3:71993663-71993682 Msa1121880:CDS 40.0%
! CAAATAATGGAGTTGGAACC+CGG + chr7_3:71993685-71993704 None:intergenic 40.0%
AACATCTCACACAGATACAG+TGG - chr7_3:71993818-71993837 Msa1121880:five_prime_UTR 40.0%
TGTGCGTGTAAACGAGGATT+CGG + chr7_3:71992009-71992028 None:intergenic 45.0%
TGTTTGTGTGCGTGTAAACG+AGG + chr7_3:71992015-71992034 None:intergenic 45.0%
TCCTCCACCAAATTTCTCCA+TGG - chr7_3:71992114-71992133 Msa1121880:three_prime_UTR 45.0%
! ACCATGGAGAAATTTGGTGG+AGG + chr7_3:71992118-71992137 None:intergenic 45.0%
CATGATAGAGCGAAGGTTGA+GGG + chr7_3:71992200-71992219 None:intergenic 45.0%
ACATGATAGAGCGAAGGTTG+AGG + chr7_3:71992201-71992220 None:intergenic 45.0%
ACCCTATCCCGAAGAGAATT+TGG - chr7_3:71992320-71992339 Msa1121880:CDS 45.0%
CTCCAAATTCTCTTCGGGAT+AGG + chr7_3:71992325-71992344 None:intergenic 45.0%
! TCTTCGTGCCGGACTTTTTA+AGG - chr7_3:71992602-71992621 Msa1121880:intron 45.0%
! GGCTATTTAGGGTTTAGGGA+TGG - chr7_3:71992720-71992739 Msa1121880:intron 45.0%
AACATGACCCGGTAAAGGAA+AGG - chr7_3:71992904-71992923 Msa1121880:intron 45.0%
ACATGACCCGGTAAAGGAAA+GGG - chr7_3:71992905-71992924 Msa1121880:intron 45.0%
! GTGGATTCTTGACCGAGTTT+TGG - chr7_3:71993005-71993024 Msa1121880:intron 45.0%
AAGTTTCCTTACCTGCTCTG+AGG - chr7_3:71993086-71993105 Msa1121880:intron 45.0%
AGTTTCCTTACCTGCTCTGA+GGG - chr7_3:71993087-71993106 Msa1121880:intron 45.0%
!! ACTTTCTGAAGCAGCCAACA+AGG + chr7_3:71993439-71993458 None:intergenic 45.0%
AAATGTTAAATCCGCTGCCC+TGG + chr7_3:71993522-71993541 None:intergenic 45.0%
GGTTTGACCTCGTAAGTCTT+AGG - chr7_3:71993549-71993568 Msa1121880:intron 45.0%
AGCATCATCTACCAGTACCA+AGG - chr7_3:71993584-71993603 Msa1121880:intron 45.0%
!! TCTTTGAAGCACCTTGGTAC+TGG + chr7_3:71993598-71993617 None:intergenic 45.0%
AGCTAAAATGATGTCAGCCG+GGG + chr7_3:71993659-71993678 None:intergenic 45.0%
CAGCTAAAATGATGTCAGCC+GGG + chr7_3:71993660-71993679 None:intergenic 45.0%
GCAGCTAAAATGATGTCAGC+CGG + chr7_3:71993661-71993680 None:intergenic 45.0%
!!! GACATCATTTTAGCTGCACC+GGG - chr7_3:71993664-71993683 Msa1121880:CDS 45.0%
TGTGCGTGTAAACGAGGATT+CGG + chr7_3:71992009-71992028 None:intergenic 45.0%
TGTTTGTGTGCGTGTAAACG+AGG + chr7_3:71992015-71992034 None:intergenic 45.0%
TCCTCCACCAAATTTCTCCA+TGG - chr7_3:71992114-71992133 Msa1121880:three_prime_UTR 45.0%
! ACCATGGAGAAATTTGGTGG+AGG + chr7_3:71992118-71992137 None:intergenic 45.0%
CATGATAGAGCGAAGGTTGA+GGG + chr7_3:71992200-71992219 None:intergenic 45.0%
ACATGATAGAGCGAAGGTTG+AGG + chr7_3:71992201-71992220 None:intergenic 45.0%
ACCCTATCCCGAAGAGAATT+TGG - chr7_3:71992320-71992339 Msa1121880:CDS 45.0%
CTCCAAATTCTCTTCGGGAT+AGG + chr7_3:71992325-71992344 None:intergenic 45.0%
! TCTTCGTGCCGGACTTTTTA+AGG - chr7_3:71992602-71992621 Msa1121880:intron 45.0%
! GGCTATTTAGGGTTTAGGGA+TGG - chr7_3:71992720-71992739 Msa1121880:intron 45.0%
AACATGACCCGGTAAAGGAA+AGG - chr7_3:71992904-71992923 Msa1121880:intron 45.0%
ACATGACCCGGTAAAGGAAA+GGG - chr7_3:71992905-71992924 Msa1121880:intron 45.0%
! GTGGATTCTTGACCGAGTTT+TGG - chr7_3:71993005-71993024 Msa1121880:intron 45.0%
AAGTTTCCTTACCTGCTCTG+AGG - chr7_3:71993086-71993105 Msa1121880:intron 45.0%
AGTTTCCTTACCTGCTCTGA+GGG - chr7_3:71993087-71993106 Msa1121880:intron 45.0%
!! ACTTTCTGAAGCAGCCAACA+AGG + chr7_3:71993439-71993458 None:intergenic 45.0%
AAATGTTAAATCCGCTGCCC+TGG + chr7_3:71993522-71993541 None:intergenic 45.0%
GGTTTGACCTCGTAAGTCTT+AGG - chr7_3:71993549-71993568 Msa1121880:intron 45.0%
AGCATCATCTACCAGTACCA+AGG - chr7_3:71993584-71993603 Msa1121880:intron 45.0%
!! TCTTTGAAGCACCTTGGTAC+TGG + chr7_3:71993598-71993617 None:intergenic 45.0%
AGCTAAAATGATGTCAGCCG+GGG + chr7_3:71993659-71993678 None:intergenic 45.0%
CAGCTAAAATGATGTCAGCC+GGG + chr7_3:71993660-71993679 None:intergenic 45.0%
GCAGCTAAAATGATGTCAGC+CGG + chr7_3:71993661-71993680 None:intergenic 45.0%
!!! GACATCATTTTAGCTGCACC+GGG - chr7_3:71993664-71993683 Msa1121880:CDS 45.0%
!!! TTTTATATATTTTTTTAGTT+TGG - chr7_3:71993193-71993212 Msa1121880:intron 5.0%
!!! TTTTATATATTTTTTTAGTT+TGG - chr7_3:71993193-71993212 Msa1121880:intron 5.0%
TTCTCTTCGGGATAGGGTTC+AGG + chr7_3:71992318-71992337 None:intergenic 50.0%
AGAATCCCTCAGAGCAGGTA+AGG + chr7_3:71993095-71993114 None:intergenic 50.0%
CATAGGACAGGTTGCCTTGT+TGG - chr7_3:71993422-71993441 Msa1121880:intron 50.0%
GTGTTTGTCTTCCGCGTTTG+AGG - chr7_3:71993469-71993488 Msa1121880:CDS 50.0%
TCGCTGATACTCCTCAAACG+CGG + chr7_3:71993483-71993502 None:intergenic 50.0%
!! GAGGAGTATCAGCGATTTGC+TGG - chr7_3:71993488-71993507 Msa1121880:CDS 50.0%
! TGGTGTTAAATCCAGGGCAG+CGG - chr7_3:71993508-71993527 Msa1121880:CDS 50.0%
GACACTGCCTAAGACTTACG+AGG + chr7_3:71993559-71993578 None:intergenic 50.0%
!! TGCGCTTCTTTGAAGCACCT+TGG + chr7_3:71993604-71993623 None:intergenic 50.0%
! AAGGTGCTTCAAAGAAGCGC+AGG - chr7_3:71993603-71993622 Msa1121880:intron 50.0%
TTCTCTTCGGGATAGGGTTC+AGG + chr7_3:71992318-71992337 None:intergenic 50.0%
AGAATCCCTCAGAGCAGGTA+AGG + chr7_3:71993095-71993114 None:intergenic 50.0%
CATAGGACAGGTTGCCTTGT+TGG - chr7_3:71993422-71993441 Msa1121880:intron 50.0%
GTGTTTGTCTTCCGCGTTTG+AGG - chr7_3:71993469-71993488 Msa1121880:CDS 50.0%
TCGCTGATACTCCTCAAACG+CGG + chr7_3:71993483-71993502 None:intergenic 50.0%
!! GAGGAGTATCAGCGATTTGC+TGG - chr7_3:71993488-71993507 Msa1121880:CDS 50.0%
! TGGTGTTAAATCCAGGGCAG+CGG - chr7_3:71993508-71993527 Msa1121880:CDS 50.0%
GACACTGCCTAAGACTTACG+AGG + chr7_3:71993559-71993578 None:intergenic 50.0%
!! TGCGCTTCTTTGAAGCACCT+TGG + chr7_3:71993604-71993623 None:intergenic 50.0%
! AAGGTGCTTCAAAGAAGCGC+AGG - chr7_3:71993603-71993622 Msa1121880:intron 50.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 71991966 71993900 71991966 ID=Msa1121880;Name=Msa1121880
chr7_3 mRNA 71991966 71993900 71991966 ID=Msa1121880-mRNA-1;Parent=Msa1121880;Name=Msa1121880-mRNA-1;_AED=0.08;_eAED=0.08;_QI=95|1|1|1|1|1|5|224|202
chr7_3 exon 71991966 71992444 71991966 ID=Msa1121880-mRNA-1:exon:18646;Parent=Msa1121880-mRNA-1
chr7_3 exon 71992556 71992599 71992556 ID=Msa1121880-mRNA-1:exon:18645;Parent=Msa1121880-mRNA-1
chr7_3 exon 71992724 71992781 71992724 ID=Msa1121880-mRNA-1:exon:18644;Parent=Msa1121880-mRNA-1
chr7_3 exon 71993468 71993561 71993468 ID=Msa1121880-mRNA-1:exon:18643;Parent=Msa1121880-mRNA-1
chr7_3 exon 71993648 71993900 71993648 ID=Msa1121880-mRNA-1:exon:18642;Parent=Msa1121880-mRNA-1
chr7_3 five_prime_UTR 71993806 71993900 71993806 ID=Msa1121880-mRNA-1:five_prime_utr;Parent=Msa1121880-mRNA-1
chr7_3 CDS 71993648 71993805 71993648 ID=Msa1121880-mRNA-1:cds;Parent=Msa1121880-mRNA-1
chr7_3 CDS 71993468 71993561 71993468 ID=Msa1121880-mRNA-1:cds;Parent=Msa1121880-mRNA-1
chr7_3 CDS 71992724 71992781 71992724 ID=Msa1121880-mRNA-1:cds;Parent=Msa1121880-mRNA-1
chr7_3 CDS 71992556 71992599 71992556 ID=Msa1121880-mRNA-1:cds;Parent=Msa1121880-mRNA-1
chr7_3 CDS 71992190 71992444 71992190 ID=Msa1121880-mRNA-1:cds;Parent=Msa1121880-mRNA-1
chr7_3 three_prime_UTR 71991966 71992189 71991966 ID=Msa1121880-mRNA-1:three_prime_utr;Parent=Msa1121880-mRNA-1
Gene Sequence

>Msa1121880

ATGGGGATGATAGTTGAAGTTGAAAACATTGATGAAGACGACGACGTTTTGATTCCTCCACCAAATTTCTCCATGGTTGAAGATTGCATTTATCGATCTAGTCTTCCTAAACCTTCCAGTTTTCCCTTTCTTCAAACCCTCAACCTTCGCTCTATCATATACTTGTGTCCTGAACCCTATCCCGAAGAGAATTTGGAGTTCTTAAAGGAGCAGAATATTCGTCTTTTTCAATTTGGAATCGAGGGCAAAACGGAAGTTTCCTTACCTGCTCTGAGGGATTCTATTATGGAGGCTTTGAAAGTTTTAGTTGATGTGAGAAATCACCCTATTTTGGTTCATTGCAAACAAGGAAAGCATAGGACAGGTTGCCTTGTTGGCTGCTTCAGAAAGTTGCAGAATTGGTGTTTGTCTTCCGCGTTTGAGGAGTATCAGCGATTTGCTGGTGTTAAATCCAGGGCAGCGGATTTAACATTTATAGAGAGGTTTGACCTCGTAAGTCTTAGGCAGTGTCTTTACAGCATCATCTACCAGTACCAAGGTGCTTCAAAGAAGCGCAGGTTGATGTACCAAGATGAGAATTTACAGAGTCCCCGGCTGACATCATTTTAG

Protein sequence

>Msa1121880

MGMIVEVENIDEDDDVLIPPPNFSMVEDCIYRSSLPKPSSFPFLQTLNLRSIIYLCPEPYPEENLEFLKEQNIRLFQFGIEGKTEVSLPALRDSIMEALKVLVDVRNHPILVHCKQGKHRTGCLVGCFRKLQNWCLSSAFEEYQRFAGVKSRAADLTFIERFDLVSLRQCLYSIIYQYQGASKKRRLMYQDENLQSPRLTSF*