AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1122830

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1122830 MtrunA17_Chr3g0077351 94.737 38 2 0 1 38 46 83 2.26e-18 79.0
Msa1122830 MtrunA17_Chr1g0212351 94.595 37 2 0 66 102 450 486 8.00e-16 72.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 47 sgRNAs with CRISPR-Local

Find 154 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATGATGAATTTAGCCTTTA+AGG 0.024367 7_3:+73379001 Msa1122830:intron
TGCCATAGATTTGCCCAATT+TGG 0.201654 7_3:-73377962 None:intergenic
CTTGACCCTTCTACAAATTC+TGG 0.208183 7_3:-73378864 None:intergenic
GTATCAAATAATTTCATTTC+AGG 0.216816 7_3:+73378834 Msa1122830:CDS
TGCTCCCTGTGAATCCTTAA+AGG 0.220940 7_3:-73379015 None:intergenic
TACCAAACATTGCAACTATT+TGG 0.232285 7_3:-73378356 None:intergenic
GGGCGACCGCCCGGGGTCGC+CGG 0.267437 7_3:-73377873 None:intergenic
GGCGACCCCGGGCGGTCGCC+CGG 0.272076 7_3:+73377875 Msa1122830:five_prime_UTR
TCGAGCCCGGGCGACCGCCC+GGG 0.322736 7_3:-73377881 None:intergenic
CACATTCCAGAATTTGTAGA+AGG 0.327537 7_3:+73378858 Msa1122830:CDS
ATCGAGCCCGGGCGACCGCC+CGG 0.328256 7_3:-73377882 None:intergenic
GGCGACCGCCCGGGGTCGCC+GGG 0.329843 7_3:-73377872 None:intergenic
GGCCAAATTGGGCAAATCTA+TGG 0.346669 7_3:+73377960 Msa1122830:exon
TACTTTACCTGATTCTGTTC+CGG 0.350730 7_3:+73378056 Msa1122830:CDS
GGCCAAATAGTTGCAATGTT+TGG 0.352385 7_3:+73378354 Msa1122830:CDS
TTGTTGACCGGAACAGAATC+AGG 0.356106 7_3:-73378063 None:intergenic
GCGACCCCGGGCGGTCGCCC+GGG 0.390046 7_3:+73377876 Msa1122830:five_prime_UTR
GAGACAGAGCCCGGCGACCC+CGG 0.397050 7_3:+73377863 Msa1122830:five_prime_UTR
GGTTCTATGTCTAGAAGAAT+TGG 0.399284 7_3:+73378012 Msa1122830:CDS
AAGCTTGAAGGTGCTAAACT+TGG 0.416708 7_3:+73378884 Msa1122830:CDS
GGCGGTCGCCCGGGCTCGAT+CGG 0.426836 7_3:+73377885 Msa1122830:five_prime_UTR
AGACAGAGCCCGGCGACCCC+GGG 0.435092 7_3:+73377864 Msa1122830:five_prime_UTR
AGGAACTTACCGATCGAGCC+CGG 0.460044 7_3:-73377894 None:intergenic
ATTCTTAAACACGCAGGAAA+AGG 0.464292 7_3:+73378318 Msa1122830:CDS
TTTAGCCTTTAAGGATTCAC+AGG 0.465528 7_3:+73379010 Msa1122830:intron
TGTAGAAGGGTCAAGCTTGA+AGG 0.470744 7_3:+73378872 Msa1122830:CDS
CGAGCCCGGGCGACCGCCCG+GGG 0.485962 7_3:-73377880 None:intergenic
GGAAAAGGAACTCAAGCAAA+TGG 0.495093 7_3:+73378333 Msa1122830:CDS
TCAGTGGCGGAGACAGAGCC+CGG 0.507968 7_3:+73377854 None:intergenic
AGCAGAACCTCTTTGTTGAC+CGG 0.514149 7_3:-73378075 None:intergenic
TTGGGAAGCAACAATATCTC+AGG 0.519836 7_3:+73378903 Msa1122830:CDS
AGAGACAGCAGTTCTCTTGA+CGG 0.527003 7_3:+73379037 Msa1122830:CDS
GTTGCAATGTTTGGTACTCA+AGG 0.543169 7_3:+73378363 Msa1122830:CDS
AGCTTGAAGGTGCTAAACTT+GGG 0.555003 7_3:+73378885 Msa1122830:CDS
TTCTGTTCCGGTCAACAAAG+AGG 0.555294 7_3:+73378068 Msa1122830:CDS
CAACATTCTCAGAGGTTCGA+AGG 0.558149 7_3:+73377991 Msa1122830:CDS
CAGAGCCCGGCGACCCCGGG+CGG 0.568493 7_3:+73377867 Msa1122830:five_prime_UTR
TTGCAATGTTTGGTACTCAA+GGG 0.577807 7_3:+73378364 Msa1122830:CDS
GGAACTTACCGATCGAGCCC+GGG 0.581615 7_3:-73377893 None:intergenic
ACATTCCAGAATTTGTAGAA+GGG 0.624926 7_3:+73378859 Msa1122830:CDS
GTATAGTAAAATTTCAAATG+CGG 0.625239 7_3:-73379082 None:intergenic
CATCAATTACCTCTAAAGAG+TGG 0.642856 7_3:-73378812 None:intergenic
AATCTCATTCTTAAACACGC+AGG 0.651217 7_3:+73378312 Msa1122830:CDS
CACTTCAACAACATTCTCAG+AGG 0.654400 7_3:+73377983 Msa1122830:CDS
TTAGCCTTTAAGGATTCACA+GGG 0.672732 7_3:+73379011 Msa1122830:intron
GACTTGACTGGAGTCAGTGG+CGG 0.675098 7_3:+73377841 None:intergenic
TAAATGGAGGGTGTAATGTG+AGG 0.740989 7_3:-73377914 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTTCAATTTCTTTTT+TGG + chr7_3:73378101-73378120 Msa1122830:intron 10.0%
!!! TTTTTTTCAATTTCTTTTTT+GGG + chr7_3:73378102-73378121 Msa1122830:intron 10.0%
!!! TTTTTTTTCAATTTCTTTTT+TGG + chr7_3:73378101-73378120 Msa1122830:intron 10.0%
!!! TTTTTTTCAATTTCTTTTTT+GGG + chr7_3:73378102-73378121 Msa1122830:intron 10.0%
!! AAAATAAACAATCATAACTA+AGG - chr7_3:73378502-73378521 None:intergenic 15.0%
!! TGTAATATTAATGATATTGA+TGG + chr7_3:73378534-73378553 Msa1122830:intron 15.0%
!! GATAAATCAAAAGTAATTAA+CGG - chr7_3:73378982-73379001 None:intergenic 15.0%
!! AAAATAAACAATCATAACTA+AGG - chr7_3:73378502-73378521 None:intergenic 15.0%
!! TGTAATATTAATGATATTGA+TGG + chr7_3:73378534-73378553 Msa1122830:intron 15.0%
!! GATAAATCAAAAGTAATTAA+CGG - chr7_3:73378982-73379001 None:intergenic 15.0%
!! CACTTCAAAAACAAAAAAAT+TGG + chr7_3:73377939-73377958 Msa1122830:five_prime_UTR 20.0%
!!! TCTATATAAGCTCTATTTTT+TGG + chr7_3:73378733-73378752 Msa1122830:intron 20.0%
!! GTATCAAATAATTTCATTTC+AGG + chr7_3:73378834-73378853 Msa1122830:CDS 20.0%
!!! TCAAATTTGAAATAGAAACT+GGG - chr7_3:73378935-73378954 None:intergenic 20.0%
!!! ATCAAATTTGAAATAGAAAC+TGG - chr7_3:73378936-73378955 None:intergenic 20.0%
!! CACTTCAAAAACAAAAAAAT+TGG + chr7_3:73377939-73377958 Msa1122830:five_prime_UTR 20.0%
!!! TCTATATAAGCTCTATTTTT+TGG + chr7_3:73378733-73378752 Msa1122830:intron 20.0%
!! GTATCAAATAATTTCATTTC+AGG + chr7_3:73378834-73378853 Msa1122830:CDS 20.0%
!!! TCAAATTTGAAATAGAAACT+GGG - chr7_3:73378935-73378954 None:intergenic 20.0%
!!! ATCAAATTTGAAATAGAAAC+TGG - chr7_3:73378936-73378955 None:intergenic 20.0%
!!! TTGTTTTTGAAGTGTGTAAA+TGG - chr7_3:73377933-73377952 None:intergenic 25.0%
! AACAAAAAAATTGGCCAAAT+TGG + chr7_3:73377948-73377967 Msa1122830:five_prime_UTR 25.0%
! ACAAAAAAATTGGCCAAATT+GGG + chr7_3:73377949-73377968 Msa1122830:five_prime_UTR 25.0%
! ATTTGATAAGTTTCAGAAAG+TGG + chr7_3:73378255-73378274 Msa1122830:intron 25.0%
! TTTGATAAGTTTCAGAAAGT+GGG + chr7_3:73378256-73378275 Msa1122830:intron 25.0%
! GCTTTATATTTACTCTTAAC+AGG + chr7_3:73378630-73378649 Msa1122830:intron 25.0%
! AAACTGAAATATAGAGCTTA+TGG - chr7_3:73378705-73378724 None:intergenic 25.0%
!!! CTCTATATTTCAGTTTTAAC+TGG + chr7_3:73378709-73378728 Msa1122830:intron 25.0%
!!! TTTTTTGGTTCAGTTTTAAC+TGG + chr7_3:73378748-73378767 Msa1122830:intron 25.0%
!!! TTCAGTTTTAACTGGTATTT+TGG + chr7_3:73378756-73378775 Msa1122830:intron 25.0%
!!! AAAAGTAATTAACGGATTGA+AGG - chr7_3:73378974-73378993 None:intergenic 25.0%
!!! TTGTTTTTGAAGTGTGTAAA+TGG - chr7_3:73377933-73377952 None:intergenic 25.0%
! AACAAAAAAATTGGCCAAAT+TGG + chr7_3:73377948-73377967 Msa1122830:five_prime_UTR 25.0%
! ACAAAAAAATTGGCCAAATT+GGG + chr7_3:73377949-73377968 Msa1122830:five_prime_UTR 25.0%
! ATTTGATAAGTTTCAGAAAG+TGG + chr7_3:73378255-73378274 Msa1122830:intron 25.0%
! TTTGATAAGTTTCAGAAAGT+GGG + chr7_3:73378256-73378275 Msa1122830:intron 25.0%
! GCTTTATATTTACTCTTAAC+AGG + chr7_3:73378630-73378649 Msa1122830:intron 25.0%
! AAACTGAAATATAGAGCTTA+TGG - chr7_3:73378705-73378724 None:intergenic 25.0%
!!! CTCTATATTTCAGTTTTAAC+TGG + chr7_3:73378709-73378728 Msa1122830:intron 25.0%
!!! TTTTTTGGTTCAGTTTTAAC+TGG + chr7_3:73378748-73378767 Msa1122830:intron 25.0%
!!! TTCAGTTTTAACTGGTATTT+TGG + chr7_3:73378756-73378775 Msa1122830:intron 25.0%
!!! AAAAGTAATTAACGGATTGA+AGG - chr7_3:73378974-73378993 None:intergenic 25.0%
!!! TTTTGAAGTGTGTAAATGGA+GGG - chr7_3:73377929-73377948 None:intergenic 30.0%
!!! TTTTTGAAGTGTGTAAATGG+AGG - chr7_3:73377930-73377949 None:intergenic 30.0%
ATTTGATCAGTTTCAGAAAG+TGG + chr7_3:73378173-73378192 Msa1122830:intron 30.0%
TTTGATCAGTTTCAGAAAGT+GGG + chr7_3:73378174-73378193 Msa1122830:intron 30.0%
TACCAAACATTGCAACTATT+TGG - chr7_3:73378359-73378378 None:intergenic 30.0%
AACAATCATAACTAAGGTCA+AGG - chr7_3:73378496-73378515 None:intergenic 30.0%
ACATTCCAGAATTTGTAGAA+GGG + chr7_3:73378859-73378878 Msa1122830:CDS 30.0%
! TTTGAAATAGAAACTGGGAT+TGG - chr7_3:73378930-73378949 None:intergenic 30.0%
CAAATTTGATTGAACTTGAG+AGG + chr7_3:73378946-73378965 Msa1122830:intron 30.0%
! CATGATGAATTTAGCCTTTA+AGG + chr7_3:73379001-73379020 Msa1122830:intron 30.0%
!!! TTTTGAAGTGTGTAAATGGA+GGG - chr7_3:73377929-73377948 None:intergenic 30.0%
!!! TTTTTGAAGTGTGTAAATGG+AGG - chr7_3:73377930-73377949 None:intergenic 30.0%
ATTTGATCAGTTTCAGAAAG+TGG + chr7_3:73378173-73378192 Msa1122830:intron 30.0%
TTTGATCAGTTTCAGAAAGT+GGG + chr7_3:73378174-73378193 Msa1122830:intron 30.0%
TACCAAACATTGCAACTATT+TGG - chr7_3:73378359-73378378 None:intergenic 30.0%
AACAATCATAACTAAGGTCA+AGG - chr7_3:73378496-73378515 None:intergenic 30.0%
ACATTCCAGAATTTGTAGAA+GGG + chr7_3:73378859-73378878 Msa1122830:CDS 30.0%
! TTTGAAATAGAAACTGGGAT+TGG - chr7_3:73378930-73378949 None:intergenic 30.0%
CAAATTTGATTGAACTTGAG+AGG + chr7_3:73378946-73378965 Msa1122830:intron 30.0%
! CATGATGAATTTAGCCTTTA+AGG + chr7_3:73379001-73379020 Msa1122830:intron 30.0%
GGTTCTATGTCTAGAAGAAT+TGG + chr7_3:73378012-73378031 Msa1122830:CDS 35.0%
TACTTTACCTGATTCTGTTC+CGG + chr7_3:73378056-73378075 Msa1122830:CDS 35.0%
!!! TTTTGGGTTTGCATGCTTTT+TGG + chr7_3:73378118-73378137 Msa1122830:intron 35.0%
AATCTCATTCTTAAACACGC+AGG + chr7_3:73378312-73378331 Msa1122830:CDS 35.0%
ATTCTTAAACACGCAGGAAA+AGG + chr7_3:73378318-73378337 Msa1122830:CDS 35.0%
TTGCAATGTTTGGTACTCAA+GGG + chr7_3:73378364-73378383 Msa1122830:CDS 35.0%
CTGAAATATAGAGCTTATGG+AGG - chr7_3:73378702-73378721 None:intergenic 35.0%
! CAGTTTTTACCACTCTTTAG+AGG + chr7_3:73378803-73378822 Msa1122830:intron 35.0%
! CATCAATTACCTCTAAAGAG+TGG - chr7_3:73378815-73378834 None:intergenic 35.0%
CACATTCCAGAATTTGTAGA+AGG + chr7_3:73378858-73378877 Msa1122830:CDS 35.0%
! TTTAGCCTTTAAGGATTCAC+AGG + chr7_3:73379010-73379029 Msa1122830:intron 35.0%
! TTAGCCTTTAAGGATTCACA+GGG + chr7_3:73379011-73379030 Msa1122830:intron 35.0%
GGTTCTATGTCTAGAAGAAT+TGG + chr7_3:73378012-73378031 Msa1122830:CDS 35.0%
TACTTTACCTGATTCTGTTC+CGG + chr7_3:73378056-73378075 Msa1122830:CDS 35.0%
!!! TTTTGGGTTTGCATGCTTTT+TGG + chr7_3:73378118-73378137 Msa1122830:intron 35.0%
AATCTCATTCTTAAACACGC+AGG + chr7_3:73378312-73378331 Msa1122830:CDS 35.0%
ATTCTTAAACACGCAGGAAA+AGG + chr7_3:73378318-73378337 Msa1122830:CDS 35.0%
TTGCAATGTTTGGTACTCAA+GGG + chr7_3:73378364-73378383 Msa1122830:CDS 35.0%
CTGAAATATAGAGCTTATGG+AGG - chr7_3:73378702-73378721 None:intergenic 35.0%
! CAGTTTTTACCACTCTTTAG+AGG + chr7_3:73378803-73378822 Msa1122830:intron 35.0%
! CATCAATTACCTCTAAAGAG+TGG - chr7_3:73378815-73378834 None:intergenic 35.0%
CACATTCCAGAATTTGTAGA+AGG + chr7_3:73378858-73378877 Msa1122830:CDS 35.0%
! TTTAGCCTTTAAGGATTCAC+AGG + chr7_3:73379010-73379029 Msa1122830:intron 35.0%
! TTAGCCTTTAAGGATTCACA+GGG + chr7_3:73379011-73379030 Msa1122830:intron 35.0%
! TAAATGGAGGGTGTAATGTG+AGG - chr7_3:73377917-73377936 None:intergenic 40.0%
TGCCATAGATTTGCCCAATT+TGG - chr7_3:73377965-73377984 None:intergenic 40.0%
CACTTCAACAACATTCTCAG+AGG + chr7_3:73377983-73378002 Msa1122830:CDS 40.0%
GGAAAAGGAACTCAAGCAAA+TGG + chr7_3:73378333-73378352 Msa1122830:CDS 40.0%
GGCCAAATAGTTGCAATGTT+TGG + chr7_3:73378354-73378373 Msa1122830:CDS 40.0%
GTTGCAATGTTTGGTACTCA+AGG + chr7_3:73378363-73378382 Msa1122830:CDS 40.0%
!!! GTATTTTGGCTCTGATTTGC+TGG + chr7_3:73378770-73378789 Msa1122830:intron 40.0%
CTTGACCCTTCTACAAATTC+TGG - chr7_3:73378867-73378886 None:intergenic 40.0%
!! AAGCTTGAAGGTGCTAAACT+TGG + chr7_3:73378884-73378903 Msa1122830:CDS 40.0%
!! AGCTTGAAGGTGCTAAACTT+GGG + chr7_3:73378885-73378904 Msa1122830:CDS 40.0%
TTGGGAAGCAACAATATCTC+AGG + chr7_3:73378903-73378922 Msa1122830:CDS 40.0%
! TAAATGGAGGGTGTAATGTG+AGG - chr7_3:73377917-73377936 None:intergenic 40.0%
TGCCATAGATTTGCCCAATT+TGG - chr7_3:73377965-73377984 None:intergenic 40.0%
CACTTCAACAACATTCTCAG+AGG + chr7_3:73377983-73378002 Msa1122830:CDS 40.0%
GGAAAAGGAACTCAAGCAAA+TGG + chr7_3:73378333-73378352 Msa1122830:CDS 40.0%
GGCCAAATAGTTGCAATGTT+TGG + chr7_3:73378354-73378373 Msa1122830:CDS 40.0%
GTTGCAATGTTTGGTACTCA+AGG + chr7_3:73378363-73378382 Msa1122830:CDS 40.0%
!!! GTATTTTGGCTCTGATTTGC+TGG + chr7_3:73378770-73378789 Msa1122830:intron 40.0%
CTTGACCCTTCTACAAATTC+TGG - chr7_3:73378867-73378886 None:intergenic 40.0%
!! AAGCTTGAAGGTGCTAAACT+TGG + chr7_3:73378884-73378903 Msa1122830:CDS 40.0%
!! AGCTTGAAGGTGCTAAACTT+GGG + chr7_3:73378885-73378904 Msa1122830:CDS 40.0%
TTGGGAAGCAACAATATCTC+AGG + chr7_3:73378903-73378922 Msa1122830:CDS 40.0%
GGCCAAATTGGGCAAATCTA+TGG + chr7_3:73377960-73377979 Msa1122830:exon 45.0%
CAACATTCTCAGAGGTTCGA+AGG + chr7_3:73377991-73378010 Msa1122830:CDS 45.0%
TTGTTGACCGGAACAGAATC+AGG - chr7_3:73378066-73378085 None:intergenic 45.0%
TTCTGTTCCGGTCAACAAAG+AGG + chr7_3:73378068-73378087 Msa1122830:CDS 45.0%
AGCAGAACCTCTTTGTTGAC+CGG - chr7_3:73378078-73378097 None:intergenic 45.0%
!! GTTTCAGAAAGTGGGTTGTC+AGG + chr7_3:73378182-73378201 Msa1122830:intron 45.0%
!! AAAGTGGGTTGTCAGGATTG+TGG + chr7_3:73378189-73378208 Msa1122830:intron 45.0%
TGTAGAAGGGTCAAGCTTGA+AGG + chr7_3:73378872-73378891 Msa1122830:CDS 45.0%
TGCTCCCTGTGAATCCTTAA+AGG - chr7_3:73379018-73379037 None:intergenic 45.0%
AGAGACAGCAGTTCTCTTGA+CGG + chr7_3:73379037-73379056 Msa1122830:CDS 45.0%
GGCCAAATTGGGCAAATCTA+TGG + chr7_3:73377960-73377979 Msa1122830:exon 45.0%
CAACATTCTCAGAGGTTCGA+AGG + chr7_3:73377991-73378010 Msa1122830:CDS 45.0%
TTGTTGACCGGAACAGAATC+AGG - chr7_3:73378066-73378085 None:intergenic 45.0%
TTCTGTTCCGGTCAACAAAG+AGG + chr7_3:73378068-73378087 Msa1122830:CDS 45.0%
AGCAGAACCTCTTTGTTGAC+CGG - chr7_3:73378078-73378097 None:intergenic 45.0%
!! GTTTCAGAAAGTGGGTTGTC+AGG + chr7_3:73378182-73378201 Msa1122830:intron 45.0%
!! AAAGTGGGTTGTCAGGATTG+TGG + chr7_3:73378189-73378208 Msa1122830:intron 45.0%
TGTAGAAGGGTCAAGCTTGA+AGG + chr7_3:73378872-73378891 Msa1122830:CDS 45.0%
TGCTCCCTGTGAATCCTTAA+AGG - chr7_3:73379018-73379037 None:intergenic 45.0%
AGAGACAGCAGTTCTCTTGA+CGG + chr7_3:73379037-73379056 Msa1122830:CDS 45.0%
AGGAACTTACCGATCGAGCC+CGG - chr7_3:73377897-73377916 None:intergenic 55.0%
AGGAACTTACCGATCGAGCC+CGG - chr7_3:73377897-73377916 None:intergenic 55.0%
GGAACTTACCGATCGAGCCC+GGG - chr7_3:73377896-73377915 None:intergenic 60.0%
GGAACTTACCGATCGAGCCC+GGG - chr7_3:73377896-73377915 None:intergenic 60.0%
GAGACAGAGCCCGGCGACCC+CGG + chr7_3:73377863-73377882 Msa1122830:five_prime_UTR 75.0%
AGACAGAGCCCGGCGACCCC+GGG + chr7_3:73377864-73377883 Msa1122830:five_prime_UTR 75.0%
GAGACAGAGCCCGGCGACCC+CGG + chr7_3:73377863-73377882 Msa1122830:five_prime_UTR 75.0%
AGACAGAGCCCGGCGACCCC+GGG + chr7_3:73377864-73377883 Msa1122830:five_prime_UTR 75.0%
! ATCGAGCCCGGGCGACCGCC+CGG - chr7_3:73377885-73377904 None:intergenic 80.0%
! GGCGGTCGCCCGGGCTCGAT+CGG + chr7_3:73377885-73377904 Msa1122830:five_prime_UTR 80.0%
! ATCGAGCCCGGGCGACCGCC+CGG - chr7_3:73377885-73377904 None:intergenic 80.0%
! GGCGGTCGCCCGGGCTCGAT+CGG + chr7_3:73377885-73377904 Msa1122830:five_prime_UTR 80.0%
! CAGAGCCCGGCGACCCCGGG+CGG + chr7_3:73377867-73377886 Msa1122830:five_prime_UTR 85.0%
! TCGAGCCCGGGCGACCGCCC+GGG - chr7_3:73377884-73377903 None:intergenic 85.0%
! CAGAGCCCGGCGACCCCGGG+CGG + chr7_3:73377867-73377886 Msa1122830:five_prime_UTR 85.0%
! TCGAGCCCGGGCGACCGCCC+GGG - chr7_3:73377884-73377903 None:intergenic 85.0%
! GGCGACCGCCCGGGGTCGCC+GGG - chr7_3:73377875-73377894 None:intergenic 90.0%
! GGGCGACCGCCCGGGGTCGC+CGG - chr7_3:73377876-73377895 None:intergenic 90.0%
! GGCGACCCCGGGCGGTCGCC+CGG + chr7_3:73377875-73377894 Msa1122830:five_prime_UTR 90.0%
! GCGACCCCGGGCGGTCGCCC+GGG + chr7_3:73377876-73377895 Msa1122830:five_prime_UTR 90.0%
! CGAGCCCGGGCGACCGCCCG+GGG - chr7_3:73377883-73377902 None:intergenic 90.0%
! GGCGACCGCCCGGGGTCGCC+GGG - chr7_3:73377875-73377894 None:intergenic 90.0%
! GGGCGACCGCCCGGGGTCGC+CGG - chr7_3:73377876-73377895 None:intergenic 90.0%
! GGCGACCCCGGGCGGTCGCC+CGG + chr7_3:73377875-73377894 Msa1122830:five_prime_UTR 90.0%
! GCGACCCCGGGCGGTCGCCC+GGG + chr7_3:73377876-73377895 Msa1122830:five_prime_UTR 90.0%
! CGAGCCCGGGCGACCGCCCG+GGG - chr7_3:73377883-73377902 None:intergenic 90.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 73377855 73379091 73377855 ID=Msa1122830;Name=Msa1122830
chr7_3 mRNA 73377855 73379091 73377855 ID=Msa1122830-mRNA-1;Parent=Msa1122830;Name=Msa1122830-mRNA-1;_AED=0.12;_eAED=0.18;_QI=124|0|0.25|1|0.33|0.25|4|0|126
chr7_3 exon 73377855 73378089 73377855 ID=Msa1122830-mRNA-1:exon:19225;Parent=Msa1122830-mRNA-1
chr7_3 exon 73378312 73378385 73378312 ID=Msa1122830-mRNA-1:exon:19226;Parent=Msa1122830-mRNA-1
chr7_3 exon 73378806 73378924 73378806 ID=Msa1122830-mRNA-1:exon:19227;Parent=Msa1122830-mRNA-1
chr7_3 exon 73379015 73379091 73379015 ID=Msa1122830-mRNA-1:exon:19228;Parent=Msa1122830-mRNA-1
chr7_3 five_prime_UTR 73377855 73377978 73377855 ID=Msa1122830-mRNA-1:five_prime_utr;Parent=Msa1122830-mRNA-1
chr7_3 CDS 73377979 73378089 73377979 ID=Msa1122830-mRNA-1:cds;Parent=Msa1122830-mRNA-1
chr7_3 CDS 73378312 73378385 73378312 ID=Msa1122830-mRNA-1:cds;Parent=Msa1122830-mRNA-1
chr7_3 CDS 73378806 73378924 73378806 ID=Msa1122830-mRNA-1:cds;Parent=Msa1122830-mRNA-1
chr7_3 CDS 73379015 73379091 73379015 ID=Msa1122830-mRNA-1:cds;Parent=Msa1122830-mRNA-1
Gene Sequence

>Msa1122830

ATGGCACTTCAACAACATTCTCAGAGGTTCGAAGGTTCTATGTCTAGAAGAATTGGTTCTACTAGCTCTAGAAGACGTACTTTACCTGATTCTGTTCCGGTCAACAAAGAGAATCTCATTCTTAAACACGCAGGAAAAGGAACTCAAGCAAATGGCCAAATAGTTGCAATGTTTGGTACTCAAGGTTTTTACCACTCTTTAGAGGTAATTGATGTATCAAATAATTTCATTTCAGGTCACATTCCAGAATTTGTAGAAGGGTCAAGCTTGAAGGTGCTAAACTTGGGAAGCAACAATATCTCAGCCTTTAAGGATTCACAGGGAGCAGAGACAGCAGTTCTCTTGACGGTACGTACATATTCAAATAATTTCCGCATTTGA
Protein sequence

>Msa1122830

MALQQHSQRFEGSMSRRIGSTSSRRRTLPDSVPVNKENLILKHAGKGTQANGQIVAMFGTQGFYHSLEVIDVSNNFISGHIPEFVEGSSLKVLNLGSNNISAFKDSQGAETAVLLTVRTYSNNFRI*