Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1077000 | XP_003598024.2 | 94.737 | 38 | 2 | 0 | 1 | 38 | 46 | 83 | 1.45e-14 | 79.3 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1077000 | G7IYE3 | 94.737 | 38 | 2 | 0 | 1 | 38 | 46 | 83 | 6.91e-15 | 79.3 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1052360 | Msa1077000 | 0.813132 | 2.988206e-51 | -8.615850e-47 |
| Msa1077000 | Msa1096210 | 0.821903 | 3.151710e-53 | -8.615850e-47 |
| Msa1077000 | Msa1122830 | 0.865468 | 5.776334e-65 | -8.615850e-47 |
| Msa0909120 | Msa1077000 | 0.823248 | 1.533966e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1077000 | MtrunA17_Chr3g0077351 | 94.737 | 38 | 2 | 0 | 1 | 38 | 46 | 83 | 1.33e-18 | 79.3 |
| Msa1077000 | MtrunA17_Chr1g0212351 | 94.595 | 37 | 2 | 0 | 66 | 102 | 450 | 486 | 5.70e-16 | 72.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 46 sgRNAs with CRISPR-Local
Find 152 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATGATGAATTTAGCCTTTA+AGG | 0.024367 | 7_2:-75525073 | Msa1077000:intron |
| TGCCATAGATTTGCCCAATT+TGG | 0.201654 | 7_2:+75526112 | None:intergenic |
| CTTGACCCTTCTACAAATTC+TGG | 0.208183 | 7_2:+75525210 | None:intergenic |
| GTATCAAATAATTTCATTTC+AGG | 0.216816 | 7_2:-75525240 | Msa1077000:CDS |
| TGCTCCCTGTGAATCCTTAA+AGG | 0.220940 | 7_2:+75525059 | None:intergenic |
| TACCAAACATTGCAACTATT+TGG | 0.232285 | 7_2:+75525718 | None:intergenic |
| GGGCGACCGCCCGGGGTCGC+CGG | 0.267437 | 7_2:+75526201 | None:intergenic |
| GGCGACCCCGGGCGGTCGCC+CGG | 0.272076 | 7_2:-75526199 | Msa1077000:five_prime_UTR |
| TCGAGCCCGGGCGACCGCCC+GGG | 0.322736 | 7_2:+75526193 | None:intergenic |
| CACATTCCAGAATTTGTAGA+AGG | 0.327537 | 7_2:-75525216 | Msa1077000:CDS |
| ATCGAGCCCGGGCGACCGCC+CGG | 0.328256 | 7_2:+75526192 | None:intergenic |
| GGCGACCGCCCGGGGTCGCC+GGG | 0.329843 | 7_2:+75526202 | None:intergenic |
| GGCCAAATTGGGCAAATCTA+TGG | 0.346669 | 7_2:-75526114 | Msa1077000:exon |
| TACTTTACCTGATTCTGTTC+CGG | 0.350730 | 7_2:-75526018 | Msa1077000:CDS |
| GGCCAAATAGTTGCAATGTT+TGG | 0.352385 | 7_2:-75525720 | Msa1077000:CDS |
| TTGTTGACCGGAACAGAATC+AGG | 0.356106 | 7_2:+75526011 | None:intergenic |
| GCGACCCCGGGCGGTCGCCC+GGG | 0.390046 | 7_2:-75526198 | Msa1077000:five_prime_UTR |
| GAGACAGAGCCCGGCGACCC+CGG | 0.397050 | 7_2:-75526211 | Msa1077000:five_prime_UTR |
| GGTTCTATGTCTAGAAGAAT+TGG | 0.399284 | 7_2:-75526062 | Msa1077000:CDS |
| AAGCTTGAAGGTGCTAAACT+TGG | 0.416708 | 7_2:-75525190 | Msa1077000:CDS |
| GGCGGTCGCCCGGGCTCGAT+CGG | 0.426836 | 7_2:-75526189 | Msa1077000:five_prime_UTR |
| AGACAGAGCCCGGCGACCCC+GGG | 0.435092 | 7_2:-75526210 | Msa1077000:five_prime_UTR |
| AGGAACTTACCGATCGAGCC+CGG | 0.460044 | 7_2:+75526180 | None:intergenic |
| ATTCTTAAACACGCAGGAAA+AGG | 0.464292 | 7_2:-75525756 | Msa1077000:CDS |
| TTTAGCCTTTAAGGATTCAC+AGG | 0.465528 | 7_2:-75525064 | Msa1077000:intron |
| TGTAGAAGGGTCAAGCTTGA+AGG | 0.470744 | 7_2:-75525202 | Msa1077000:CDS |
| CGAGCCCGGGCGACCGCCCG+GGG | 0.485962 | 7_2:+75526194 | None:intergenic |
| GGAAAAGGAACTCAAGCAAA+TGG | 0.495093 | 7_2:-75525741 | Msa1077000:CDS |
| TCAGTGGCGGAGACAGAGCC+CGG | 0.507968 | 7_2:-75526220 | Msa1077000:five_prime_UTR |
| AGCAGAACCTCTTTGTTGAC+CGG | 0.514149 | 7_2:+75525999 | None:intergenic |
| TTGGGAAGCAACAATATCTC+AGG | 0.519836 | 7_2:-75525171 | Msa1077000:intron |
| AGAGACAGCAGTTCTCTTGA+CGG | 0.527003 | 7_2:-75525037 | None:intergenic |
| GTTGCAATGTTTGGTACTCA+AGG | 0.543169 | 7_2:-75525711 | Msa1077000:CDS |
| AGCTTGAAGGTGCTAAACTT+GGG | 0.555003 | 7_2:-75525189 | Msa1077000:CDS |
| TTCTGTTCCGGTCAACAAAG+AGG | 0.555294 | 7_2:-75526006 | Msa1077000:intron |
| CAACATTCTCAGAGGTTCGA+AGG | 0.558149 | 7_2:-75526083 | Msa1077000:CDS |
| CAGAGCCCGGCGACCCCGGG+CGG | 0.568493 | 7_2:-75526207 | Msa1077000:five_prime_UTR |
| TTGCAATGTTTGGTACTCAA+GGG | 0.577807 | 7_2:-75525710 | Msa1077000:intron |
| GGAACTTACCGATCGAGCCC+GGG | 0.581615 | 7_2:+75526181 | None:intergenic |
| ACATTCCAGAATTTGTAGAA+GGG | 0.624926 | 7_2:-75525215 | Msa1077000:CDS |
| CATCAATTACCTCTAAAGAG+TGG | 0.642856 | 7_2:+75525262 | None:intergenic |
| AATCTCATTCTTAAACACGC+AGG | 0.651217 | 7_2:-75525762 | Msa1077000:CDS |
| CACTTCAACAACATTCTCAG+AGG | 0.654400 | 7_2:-75526091 | Msa1077000:CDS |
| TTAGCCTTTAAGGATTCACA+GGG | 0.672732 | 7_2:-75525063 | Msa1077000:intron |
| GACTTGACTGGAGTCAGTGG+CGG | 0.675098 | 7_2:-75526233 | None:intergenic |
| TAAATGGAGGGTGTAATGTG+AGG | 0.740989 | 7_2:+75526160 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTTCAATTTCTTTTT+TGG | - | chr7_2:75525284-75525303 | Msa1077000:intron | 10.0% |
| !!! | TTTTTTTCAATTTCTTTTTT+GGG | - | chr7_2:75525285-75525304 | Msa1077000:intron | 10.0% |
| !!! | TTTTTTTTCAATTTCTTTTT+TGG | - | chr7_2:75525284-75525303 | Msa1077000:intron | 10.0% |
| !!! | TTTTTTTCAATTTCTTTTTT+GGG | - | chr7_2:75525285-75525304 | Msa1077000:intron | 10.0% |
| !! | AAAATAAACAATCATAACTA+AGG | + | chr7_2:75525685-75525704 | None:intergenic | 15.0% |
| !! | TGTAATATTAATGATATTGA+TGG | - | chr7_2:75525717-75525736 | Msa1077000:CDS | 15.0% |
| !! | GATAAATCAAAAGTAATTAA+CGG | + | chr7_2:75526165-75526184 | None:intergenic | 15.0% |
| !! | AAAATAAACAATCATAACTA+AGG | + | chr7_2:75525685-75525704 | None:intergenic | 15.0% |
| !! | TGTAATATTAATGATATTGA+TGG | - | chr7_2:75525717-75525736 | Msa1077000:CDS | 15.0% |
| !! | GATAAATCAAAAGTAATTAA+CGG | + | chr7_2:75526165-75526184 | None:intergenic | 15.0% |
| !! | CACTTCAAAAACAAAAAAAT+TGG | - | chr7_2:75525122-75525141 | Msa1077000:intron | 20.0% |
| !!! | TCTATATAAGCTCTATTTTT+TGG | - | chr7_2:75525916-75525935 | Msa1077000:intron | 20.0% |
| !! | GTATCAAATAATTTCATTTC+AGG | - | chr7_2:75526017-75526036 | Msa1077000:CDS | 20.0% |
| !!! | TCAAATTTGAAATAGAAACT+GGG | + | chr7_2:75526118-75526137 | None:intergenic | 20.0% |
| !!! | ATCAAATTTGAAATAGAAAC+TGG | + | chr7_2:75526119-75526138 | None:intergenic | 20.0% |
| !! | CACTTCAAAAACAAAAAAAT+TGG | - | chr7_2:75525122-75525141 | Msa1077000:intron | 20.0% |
| !!! | TCTATATAAGCTCTATTTTT+TGG | - | chr7_2:75525916-75525935 | Msa1077000:intron | 20.0% |
| !! | GTATCAAATAATTTCATTTC+AGG | - | chr7_2:75526017-75526036 | Msa1077000:CDS | 20.0% |
| !!! | TCAAATTTGAAATAGAAACT+GGG | + | chr7_2:75526118-75526137 | None:intergenic | 20.0% |
| !!! | ATCAAATTTGAAATAGAAAC+TGG | + | chr7_2:75526119-75526138 | None:intergenic | 20.0% |
| !!! | TTGTTTTTGAAGTGTGTAAA+TGG | + | chr7_2:75525116-75525135 | None:intergenic | 25.0% |
| ! | AACAAAAAAATTGGCCAAAT+TGG | - | chr7_2:75525131-75525150 | Msa1077000:intron | 25.0% |
| ! | ACAAAAAAATTGGCCAAATT+GGG | - | chr7_2:75525132-75525151 | Msa1077000:intron | 25.0% |
| ! | ATTTGATAAGTTTCAGAAAG+TGG | - | chr7_2:75525438-75525457 | Msa1077000:intron | 25.0% |
| ! | TTTGATAAGTTTCAGAAAGT+GGG | - | chr7_2:75525439-75525458 | Msa1077000:intron | 25.0% |
| ! | GCTTTATATTTACTCTTAAC+AGG | - | chr7_2:75525813-75525832 | Msa1077000:intron | 25.0% |
| ! | AAACTGAAATATAGAGCTTA+TGG | + | chr7_2:75525888-75525907 | None:intergenic | 25.0% |
| !!! | CTCTATATTTCAGTTTTAAC+TGG | - | chr7_2:75525892-75525911 | Msa1077000:intron | 25.0% |
| !!! | TTTTTTGGTTCAGTTTTAAC+TGG | - | chr7_2:75525931-75525950 | Msa1077000:intron | 25.0% |
| !!! | TTCAGTTTTAACTGGTATTT+TGG | - | chr7_2:75525939-75525958 | Msa1077000:intron | 25.0% |
| !!! | AAAAGTAATTAACGGATTGA+AGG | + | chr7_2:75526157-75526176 | None:intergenic | 25.0% |
| !!! | TTGTTTTTGAAGTGTGTAAA+TGG | + | chr7_2:75525116-75525135 | None:intergenic | 25.0% |
| ! | AACAAAAAAATTGGCCAAAT+TGG | - | chr7_2:75525131-75525150 | Msa1077000:intron | 25.0% |
| ! | ACAAAAAAATTGGCCAAATT+GGG | - | chr7_2:75525132-75525151 | Msa1077000:intron | 25.0% |
| ! | ATTTGATAAGTTTCAGAAAG+TGG | - | chr7_2:75525438-75525457 | Msa1077000:intron | 25.0% |
| ! | TTTGATAAGTTTCAGAAAGT+GGG | - | chr7_2:75525439-75525458 | Msa1077000:intron | 25.0% |
| ! | GCTTTATATTTACTCTTAAC+AGG | - | chr7_2:75525813-75525832 | Msa1077000:intron | 25.0% |
| ! | AAACTGAAATATAGAGCTTA+TGG | + | chr7_2:75525888-75525907 | None:intergenic | 25.0% |
| !!! | CTCTATATTTCAGTTTTAAC+TGG | - | chr7_2:75525892-75525911 | Msa1077000:intron | 25.0% |
| !!! | TTTTTTGGTTCAGTTTTAAC+TGG | - | chr7_2:75525931-75525950 | Msa1077000:intron | 25.0% |
| !!! | TTCAGTTTTAACTGGTATTT+TGG | - | chr7_2:75525939-75525958 | Msa1077000:intron | 25.0% |
| !!! | AAAAGTAATTAACGGATTGA+AGG | + | chr7_2:75526157-75526176 | None:intergenic | 25.0% |
| !!! | TTTTGAAGTGTGTAAATGGA+GGG | + | chr7_2:75525112-75525131 | None:intergenic | 30.0% |
| !!! | TTTTTGAAGTGTGTAAATGG+AGG | + | chr7_2:75525113-75525132 | None:intergenic | 30.0% |
| ATTTGATCAGTTTCAGAAAG+TGG | - | chr7_2:75525356-75525375 | Msa1077000:intron | 30.0% | |
| TTTGATCAGTTTCAGAAAGT+GGG | - | chr7_2:75525357-75525376 | Msa1077000:intron | 30.0% | |
| TACCAAACATTGCAACTATT+TGG | + | chr7_2:75525542-75525561 | None:intergenic | 30.0% | |
| AACAATCATAACTAAGGTCA+AGG | + | chr7_2:75525679-75525698 | None:intergenic | 30.0% | |
| ACATTCCAGAATTTGTAGAA+GGG | - | chr7_2:75526042-75526061 | Msa1077000:CDS | 30.0% | |
| ! | TTTGAAATAGAAACTGGGAT+TGG | + | chr7_2:75526113-75526132 | None:intergenic | 30.0% |
| CAAATTTGATTGAACTTGAG+AGG | - | chr7_2:75526129-75526148 | Msa1077000:five_prime_UTR | 30.0% | |
| ! | CATGATGAATTTAGCCTTTA+AGG | - | chr7_2:75526184-75526203 | Msa1077000:five_prime_UTR | 30.0% |
| !!! | TTTTGAAGTGTGTAAATGGA+GGG | + | chr7_2:75525112-75525131 | None:intergenic | 30.0% |
| !!! | TTTTTGAAGTGTGTAAATGG+AGG | + | chr7_2:75525113-75525132 | None:intergenic | 30.0% |
| ATTTGATCAGTTTCAGAAAG+TGG | - | chr7_2:75525356-75525375 | Msa1077000:intron | 30.0% | |
| TTTGATCAGTTTCAGAAAGT+GGG | - | chr7_2:75525357-75525376 | Msa1077000:intron | 30.0% | |
| TACCAAACATTGCAACTATT+TGG | + | chr7_2:75525542-75525561 | None:intergenic | 30.0% | |
| AACAATCATAACTAAGGTCA+AGG | + | chr7_2:75525679-75525698 | None:intergenic | 30.0% | |
| ACATTCCAGAATTTGTAGAA+GGG | - | chr7_2:75526042-75526061 | Msa1077000:CDS | 30.0% | |
| ! | TTTGAAATAGAAACTGGGAT+TGG | + | chr7_2:75526113-75526132 | None:intergenic | 30.0% |
| CAAATTTGATTGAACTTGAG+AGG | - | chr7_2:75526129-75526148 | Msa1077000:five_prime_UTR | 30.0% | |
| ! | CATGATGAATTTAGCCTTTA+AGG | - | chr7_2:75526184-75526203 | Msa1077000:five_prime_UTR | 30.0% |
| GGTTCTATGTCTAGAAGAAT+TGG | - | chr7_2:75525195-75525214 | Msa1077000:CDS | 35.0% | |
| TACTTTACCTGATTCTGTTC+CGG | - | chr7_2:75525239-75525258 | Msa1077000:CDS | 35.0% | |
| !!! | TTTTGGGTTTGCATGCTTTT+TGG | - | chr7_2:75525301-75525320 | Msa1077000:intron | 35.0% |
| AATCTCATTCTTAAACACGC+AGG | - | chr7_2:75525495-75525514 | Msa1077000:intron | 35.0% | |
| ATTCTTAAACACGCAGGAAA+AGG | - | chr7_2:75525501-75525520 | Msa1077000:intron | 35.0% | |
| TTGCAATGTTTGGTACTCAA+GGG | - | chr7_2:75525547-75525566 | Msa1077000:intron | 35.0% | |
| CTGAAATATAGAGCTTATGG+AGG | + | chr7_2:75525885-75525904 | None:intergenic | 35.0% | |
| ! | CAGTTTTTACCACTCTTTAG+AGG | - | chr7_2:75525986-75526005 | Msa1077000:intron | 35.0% |
| ! | CATCAATTACCTCTAAAGAG+TGG | + | chr7_2:75525998-75526017 | None:intergenic | 35.0% |
| CACATTCCAGAATTTGTAGA+AGG | - | chr7_2:75526041-75526060 | Msa1077000:CDS | 35.0% | |
| ! | TTTAGCCTTTAAGGATTCAC+AGG | - | chr7_2:75526193-75526212 | Msa1077000:five_prime_UTR | 35.0% |
| ! | TTAGCCTTTAAGGATTCACA+GGG | - | chr7_2:75526194-75526213 | Msa1077000:five_prime_UTR | 35.0% |
| GGTTCTATGTCTAGAAGAAT+TGG | - | chr7_2:75525195-75525214 | Msa1077000:CDS | 35.0% | |
| TACTTTACCTGATTCTGTTC+CGG | - | chr7_2:75525239-75525258 | Msa1077000:CDS | 35.0% | |
| !!! | TTTTGGGTTTGCATGCTTTT+TGG | - | chr7_2:75525301-75525320 | Msa1077000:intron | 35.0% |
| AATCTCATTCTTAAACACGC+AGG | - | chr7_2:75525495-75525514 | Msa1077000:intron | 35.0% | |
| ATTCTTAAACACGCAGGAAA+AGG | - | chr7_2:75525501-75525520 | Msa1077000:intron | 35.0% | |
| TTGCAATGTTTGGTACTCAA+GGG | - | chr7_2:75525547-75525566 | Msa1077000:intron | 35.0% | |
| CTGAAATATAGAGCTTATGG+AGG | + | chr7_2:75525885-75525904 | None:intergenic | 35.0% | |
| ! | CAGTTTTTACCACTCTTTAG+AGG | - | chr7_2:75525986-75526005 | Msa1077000:intron | 35.0% |
| ! | CATCAATTACCTCTAAAGAG+TGG | + | chr7_2:75525998-75526017 | None:intergenic | 35.0% |
| CACATTCCAGAATTTGTAGA+AGG | - | chr7_2:75526041-75526060 | Msa1077000:CDS | 35.0% | |
| ! | TTTAGCCTTTAAGGATTCAC+AGG | - | chr7_2:75526193-75526212 | Msa1077000:five_prime_UTR | 35.0% |
| ! | TTAGCCTTTAAGGATTCACA+GGG | - | chr7_2:75526194-75526213 | Msa1077000:five_prime_UTR | 35.0% |
| ! | TAAATGGAGGGTGTAATGTG+AGG | + | chr7_2:75525100-75525119 | None:intergenic | 40.0% |
| TGCCATAGATTTGCCCAATT+TGG | + | chr7_2:75525148-75525167 | None:intergenic | 40.0% | |
| CACTTCAACAACATTCTCAG+AGG | - | chr7_2:75525166-75525185 | Msa1077000:intron | 40.0% | |
| GGAAAAGGAACTCAAGCAAA+TGG | - | chr7_2:75525516-75525535 | Msa1077000:intron | 40.0% | |
| GGCCAAATAGTTGCAATGTT+TGG | - | chr7_2:75525537-75525556 | Msa1077000:intron | 40.0% | |
| GTTGCAATGTTTGGTACTCA+AGG | - | chr7_2:75525546-75525565 | Msa1077000:intron | 40.0% | |
| !!! | GTATTTTGGCTCTGATTTGC+TGG | - | chr7_2:75525953-75525972 | Msa1077000:intron | 40.0% |
| CTTGACCCTTCTACAAATTC+TGG | + | chr7_2:75526050-75526069 | None:intergenic | 40.0% | |
| !! | AAGCTTGAAGGTGCTAAACT+TGG | - | chr7_2:75526067-75526086 | Msa1077000:CDS | 40.0% |
| !! | AGCTTGAAGGTGCTAAACTT+GGG | - | chr7_2:75526068-75526087 | Msa1077000:CDS | 40.0% |
| TTGGGAAGCAACAATATCTC+AGG | - | chr7_2:75526086-75526105 | Msa1077000:CDS | 40.0% | |
| ! | TAAATGGAGGGTGTAATGTG+AGG | + | chr7_2:75525100-75525119 | None:intergenic | 40.0% |
| TGCCATAGATTTGCCCAATT+TGG | + | chr7_2:75525148-75525167 | None:intergenic | 40.0% | |
| CACTTCAACAACATTCTCAG+AGG | - | chr7_2:75525166-75525185 | Msa1077000:intron | 40.0% | |
| GGAAAAGGAACTCAAGCAAA+TGG | - | chr7_2:75525516-75525535 | Msa1077000:intron | 40.0% | |
| GGCCAAATAGTTGCAATGTT+TGG | - | chr7_2:75525537-75525556 | Msa1077000:intron | 40.0% | |
| GTTGCAATGTTTGGTACTCA+AGG | - | chr7_2:75525546-75525565 | Msa1077000:intron | 40.0% | |
| !!! | GTATTTTGGCTCTGATTTGC+TGG | - | chr7_2:75525953-75525972 | Msa1077000:intron | 40.0% |
| CTTGACCCTTCTACAAATTC+TGG | + | chr7_2:75526050-75526069 | None:intergenic | 40.0% | |
| !! | AAGCTTGAAGGTGCTAAACT+TGG | - | chr7_2:75526067-75526086 | Msa1077000:CDS | 40.0% |
| !! | AGCTTGAAGGTGCTAAACTT+GGG | - | chr7_2:75526068-75526087 | Msa1077000:CDS | 40.0% |
| TTGGGAAGCAACAATATCTC+AGG | - | chr7_2:75526086-75526105 | Msa1077000:CDS | 40.0% | |
| GGCCAAATTGGGCAAATCTA+TGG | - | chr7_2:75525143-75525162 | Msa1077000:intron | 45.0% | |
| CAACATTCTCAGAGGTTCGA+AGG | - | chr7_2:75525174-75525193 | Msa1077000:CDS | 45.0% | |
| TTGTTGACCGGAACAGAATC+AGG | + | chr7_2:75525249-75525268 | None:intergenic | 45.0% | |
| TTCTGTTCCGGTCAACAAAG+AGG | - | chr7_2:75525251-75525270 | Msa1077000:CDS | 45.0% | |
| AGCAGAACCTCTTTGTTGAC+CGG | + | chr7_2:75525261-75525280 | None:intergenic | 45.0% | |
| !! | GTTTCAGAAAGTGGGTTGTC+AGG | - | chr7_2:75525365-75525384 | Msa1077000:intron | 45.0% |
| !! | AAAGTGGGTTGTCAGGATTG+TGG | - | chr7_2:75525372-75525391 | Msa1077000:intron | 45.0% |
| TGTAGAAGGGTCAAGCTTGA+AGG | - | chr7_2:75526055-75526074 | Msa1077000:CDS | 45.0% | |
| TGCTCCCTGTGAATCCTTAA+AGG | + | chr7_2:75526201-75526220 | None:intergenic | 45.0% | |
| GGCCAAATTGGGCAAATCTA+TGG | - | chr7_2:75525143-75525162 | Msa1077000:intron | 45.0% | |
| CAACATTCTCAGAGGTTCGA+AGG | - | chr7_2:75525174-75525193 | Msa1077000:CDS | 45.0% | |
| TTGTTGACCGGAACAGAATC+AGG | + | chr7_2:75525249-75525268 | None:intergenic | 45.0% | |
| TTCTGTTCCGGTCAACAAAG+AGG | - | chr7_2:75525251-75525270 | Msa1077000:CDS | 45.0% | |
| AGCAGAACCTCTTTGTTGAC+CGG | + | chr7_2:75525261-75525280 | None:intergenic | 45.0% | |
| !! | GTTTCAGAAAGTGGGTTGTC+AGG | - | chr7_2:75525365-75525384 | Msa1077000:intron | 45.0% |
| !! | AAAGTGGGTTGTCAGGATTG+TGG | - | chr7_2:75525372-75525391 | Msa1077000:intron | 45.0% |
| TGTAGAAGGGTCAAGCTTGA+AGG | - | chr7_2:75526055-75526074 | Msa1077000:CDS | 45.0% | |
| TGCTCCCTGTGAATCCTTAA+AGG | + | chr7_2:75526201-75526220 | None:intergenic | 45.0% | |
| AGGAACTTACCGATCGAGCC+CGG | + | chr7_2:75525080-75525099 | None:intergenic | 55.0% | |
| AGGAACTTACCGATCGAGCC+CGG | + | chr7_2:75525080-75525099 | None:intergenic | 55.0% | |
| GGAACTTACCGATCGAGCCC+GGG | + | chr7_2:75525079-75525098 | None:intergenic | 60.0% | |
| GGAACTTACCGATCGAGCCC+GGG | + | chr7_2:75525079-75525098 | None:intergenic | 60.0% | |
| GAGACAGAGCCCGGCGACCC+CGG | - | chr7_2:75525046-75525065 | Msa1077000:CDS | 75.0% | |
| AGACAGAGCCCGGCGACCCC+GGG | - | chr7_2:75525047-75525066 | Msa1077000:CDS | 75.0% | |
| GAGACAGAGCCCGGCGACCC+CGG | - | chr7_2:75525046-75525065 | Msa1077000:CDS | 75.0% | |
| AGACAGAGCCCGGCGACCCC+GGG | - | chr7_2:75525047-75525066 | Msa1077000:CDS | 75.0% | |
| ! | ATCGAGCCCGGGCGACCGCC+CGG | + | chr7_2:75525068-75525087 | None:intergenic | 80.0% |
| ! | GGCGGTCGCCCGGGCTCGAT+CGG | - | chr7_2:75525068-75525087 | Msa1077000:intron | 80.0% |
| ! | ATCGAGCCCGGGCGACCGCC+CGG | + | chr7_2:75525068-75525087 | None:intergenic | 80.0% |
| ! | GGCGGTCGCCCGGGCTCGAT+CGG | - | chr7_2:75525068-75525087 | Msa1077000:intron | 80.0% |
| ! | CAGAGCCCGGCGACCCCGGG+CGG | - | chr7_2:75525050-75525069 | Msa1077000:CDS | 85.0% |
| ! | TCGAGCCCGGGCGACCGCCC+GGG | + | chr7_2:75525067-75525086 | None:intergenic | 85.0% |
| ! | CAGAGCCCGGCGACCCCGGG+CGG | - | chr7_2:75525050-75525069 | Msa1077000:CDS | 85.0% |
| ! | TCGAGCCCGGGCGACCGCCC+GGG | + | chr7_2:75525067-75525086 | None:intergenic | 85.0% |
| ! | GGCGACCGCCCGGGGTCGCC+GGG | + | chr7_2:75525058-75525077 | None:intergenic | 90.0% |
| ! | GGGCGACCGCCCGGGGTCGC+CGG | + | chr7_2:75525059-75525078 | None:intergenic | 90.0% |
| ! | GGCGACCCCGGGCGGTCGCC+CGG | - | chr7_2:75525058-75525077 | Msa1077000:CDS | 90.0% |
| ! | GCGACCCCGGGCGGTCGCCC+GGG | - | chr7_2:75525059-75525078 | Msa1077000:CDS | 90.0% |
| ! | CGAGCCCGGGCGACCGCCCG+GGG | + | chr7_2:75525066-75525085 | None:intergenic | 90.0% |
| ! | GGCGACCGCCCGGGGTCGCC+GGG | + | chr7_2:75525058-75525077 | None:intergenic | 90.0% |
| ! | GGGCGACCGCCCGGGGTCGC+CGG | + | chr7_2:75525059-75525078 | None:intergenic | 90.0% |
| ! | GGCGACCCCGGGCGGTCGCC+CGG | - | chr7_2:75525058-75525077 | Msa1077000:CDS | 90.0% |
| ! | GCGACCCCGGGCGGTCGCCC+GGG | - | chr7_2:75525059-75525078 | Msa1077000:CDS | 90.0% |
| ! | CGAGCCCGGGCGACCGCCCG+GGG | + | chr7_2:75525066-75525085 | None:intergenic | 90.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_2 | gene | 75525038 | 75526241 | 75525038 | ID=Msa1077000;Name=Msa1077000 |
| chr7_2 | mRNA | 75525038 | 75526241 | 75525038 | ID=Msa1077000-mRNA-1;Parent=Msa1077000;Name=Msa1077000-mRNA-1;_AED=0.09;_eAED=0.16;_QI=124|0|0.25|1|0.33|0.25|4|0|116 |
| chr7_2 | exon | 75525038 | 75525081 | 75525038 | ID=Msa1077000-mRNA-1:exon:18041;Parent=Msa1077000-mRNA-1 |
| chr7_2 | exon | 75525172 | 75525290 | 75525172 | ID=Msa1077000-mRNA-1:exon:18040;Parent=Msa1077000-mRNA-1 |
| chr7_2 | exon | 75525711 | 75525784 | 75525711 | ID=Msa1077000-mRNA-1:exon:18039;Parent=Msa1077000-mRNA-1 |
| chr7_2 | exon | 75526007 | 75526241 | 75526007 | ID=Msa1077000-mRNA-1:exon:18038;Parent=Msa1077000-mRNA-1 |
| chr7_2 | five_prime_UTR | 75526118 | 75526241 | 75526118 | ID=Msa1077000-mRNA-1:five_prime_utr;Parent=Msa1077000-mRNA-1 |
| chr7_2 | CDS | 75526007 | 75526117 | 75526007 | ID=Msa1077000-mRNA-1:cds;Parent=Msa1077000-mRNA-1 |
| chr7_2 | CDS | 75525711 | 75525784 | 75525711 | ID=Msa1077000-mRNA-1:cds;Parent=Msa1077000-mRNA-1 |
| chr7_2 | CDS | 75525172 | 75525290 | 75525172 | ID=Msa1077000-mRNA-1:cds;Parent=Msa1077000-mRNA-1 |
| chr7_2 | CDS | 75525038 | 75525081 | 75525038 | ID=Msa1077000-mRNA-1:cds;Parent=Msa1077000-mRNA-1 |
| Gene Sequence |
| Protein sequence |
