AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1123270

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1123270 MtrunA17_Chr7g0262631 96.853 985 28 3 1 985 1 982 0.0 1950
Msa1123270 MtrunA17_Chr1g0182831 56.663 893 322 22 105 984 1 841 0.0 800
Msa1123270 MtrunA17_Chr1g0182111 29.135 532 282 19 61 558 30 500 1.03e-23 108
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1123270 AT4G28760.2 44.132 997 443 33 14 982 13 923 0.0 631
Msa1123270 AT4G28760.1 44.132 997 443 33 14 982 13 923 0.0 631
Msa1123270 AT5G43880.3 37.155 977 391 35 19 959 13 802 3.98e-137 432
Msa1123270 AT5G43880.2 37.155 977 391 35 19 959 13 802 3.98e-137 432
Msa1123270 AT5G43880.4 37.155 977 391 35 19 959 13 802 3.98e-137 432
Msa1123270 AT5G43880.1 37.155 977 391 35 19 959 13 802 3.98e-137 432
Msa1123270 AT2G20240.1 37.138 622 281 23 87 686 10 543 4.81e-66 236
Msa1123270 AT2G20240.1 39.130 276 107 8 706 981 498 712 1.42e-39 157
Msa1123270 AT3G53540.1 27.248 745 378 30 94 749 61 730 2.83e-26 117
Msa1123270 AT3G53540.2 37.766 188 92 6 93 274 91 259 1.00e-21 102

Find 269 sgRNAs with CRISPR-Local

Find 437 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGGGATTTGAAATGGATATT+TGG 0.167673 7_3:+74115270 Msa1123270:CDS
ACAAAGATATTTATGAATTA+TGG 0.185101 7_3:+74112067 Msa1123270:CDS
TAAAGGGTGGGTTGAGCTTA+TGG 0.206293 7_3:+74115250 Msa1123270:CDS
CAATTTCTTTGGACATTTCT+TGG 0.216516 7_3:-74111822 None:intergenic
ATGCTTGGAAACAATTTCTT+TGG 0.217751 7_3:-74111833 None:intergenic
CACGCAACATCATTATTTAA+TGG 0.233056 7_3:-74112441 None:intergenic
CAGCAAACTCATCAACTTTC+TGG 0.239330 7_3:-74112497 None:intergenic
TCAGTAGCATTTAATAAATT+AGG 0.239479 7_3:-74115471 None:intergenic
AGGACTTCAGGTGAGTTTAT+TGG 0.241287 7_3:-74113443 None:intergenic
AAATGTGGTTGCAAAATTAA+TGG 0.251624 7_3:+74111864 Msa1123270:CDS
TAGTGGCATGAGGTCTGTTT+GGG 0.254407 7_3:+74115166 Msa1123270:CDS
AAACCAATGAAGGCTTTAAT+TGG 0.261992 7_3:-74114746 None:intergenic
GGCTTTGACATGGTCAATTC+AGG 0.263143 7_3:-74114371 None:intergenic
CGATCTGTTAATAAAGTTAC+TGG 0.266125 7_3:+74112281 Msa1123270:CDS
GTTGGAGCTTAAAACTTCTA+AGG 0.271656 7_3:-74112256 None:intergenic
GCAGCTGGAAGATAGGTTTA+TGG 0.274569 7_3:+74111996 Msa1123270:CDS
CGGATTAGAAAGTTCCTTAA+TGG 0.284283 7_3:+74115043 Msa1123270:CDS
TCTTTCAGAAAGTCGTTTCT+TGG 0.289950 7_3:-74112955 None:intergenic
CTAGTGGCATGAGGTCTGTT+TGG 0.294493 7_3:+74115165 Msa1123270:CDS
AGCTTCAACGGTGGCTTCTC+TGG 0.308318 7_3:+74113485 Msa1123270:CDS
ACTCCACAACCTGCCCATTA+AGG 0.313097 7_3:-74115057 None:intergenic
AATACACGGTTTCATCTCTT+TGG 0.327947 7_3:-74112722 None:intergenic
CAGAGGTGAAGATATTTAAT+AGG 0.329307 7_3:-74115538 None:intergenic
TTGTGTCAATGTTGCACTAA+TGG 0.332246 7_3:+74115007 Msa1123270:CDS
AGTATGAAATCATCATTTAA+AGG 0.332908 7_3:+74113308 Msa1123270:CDS
GGGATTTGAAATGGATATTT+GGG 0.336959 7_3:+74115271 Msa1123270:CDS
AAAGGGTGGGTTGAGCTTAT+GGG 0.338522 7_3:+74115251 Msa1123270:CDS
TGTGAGGGCGCATGATATTA+AGG 0.340359 7_3:+74112557 Msa1123270:CDS
TTTGCATTTACAACAGTAGA+AGG 0.341551 7_3:-74110928 None:intergenic
GTTGCACTAATGGAAATTAC+TGG 0.343281 7_3:+74115017 Msa1123270:CDS
CTTCGCTTTGCTTCGTGTAC+AGG 0.352408 7_3:-74114951 None:intergenic
CACCATCTCCAAGACATTCT+TGG 0.352438 7_3:+74112844 Msa1123270:CDS
TTGGTCCATAAGCATCTTGA+TGG 0.355949 7_3:-74111803 None:intergenic
ATACAATCAAATCCACCAAT+AGG 0.367979 7_3:-74115121 None:intergenic
CTGCGACATCATTCAATCAT+TGG 0.378641 7_3:+74111974 Msa1123270:CDS
CTTTGACTTTGTCAGCTCCT+TGG 0.386187 7_3:-74113285 None:intergenic
TAATGGGCAGGTTGTGGAGT+GGG 0.387786 7_3:+74115060 Msa1123270:CDS
TGAGCTTATGGGATTTGAAA+TGG 0.388874 7_3:+74115262 Msa1123270:CDS
TTTAATAAATTAGGTTAAGT+AGG 0.390124 7_3:-74115462 None:intergenic
TTTATATACGTACTTTGTTT+CGG 0.393212 7_3:-74115561 None:intergenic
CTCCCCGTGGAAGGGCTTCA+AGG 0.395279 7_3:-74111888 None:intergenic
CTGAAGGATGAAGACGAATA+AGG 0.395402 7_3:-74112891 None:intergenic
AAAGCCTTCATTGGTTTCCT+TGG 0.396749 7_3:+74114752 Msa1123270:CDS
AGAGAGCGGAGTGGTTAGGT+TGG 0.396987 7_3:-74110296 None:intergenic
AATGTGGTTGCAAAATTAAT+GGG 0.399040 7_3:+74111865 Msa1123270:CDS
AGAGAGAGAGCGGAGTGGTT+AGG 0.401422 7_3:-74110300 None:intergenic
CTGCAAGAAACAGATTCATT+TGG 0.401998 7_3:-74113119 None:intergenic
CTTTATTAACAGATCGTTGT+TGG 0.402343 7_3:-74112274 None:intergenic
ACCATCTCCAAGACATTCTT+GGG 0.403090 7_3:+74112845 Msa1123270:CDS
GGAGGTTCTAAAACTGAGAT+TGG 0.405864 7_3:-74114437 None:intergenic
TGGGTTAGCTTAGCTAAGTT+AGG 0.407458 7_3:-74110276 None:intergenic
GGTGTTTGCGTCGCGTGGTC+AGG 0.408263 7_3:-74110255 None:intergenic
GTACCAATTAAAGCCTTCAT+TGG 0.408302 7_3:+74114743 Msa1123270:CDS
TTAGCTGTGGAGAGAAGCCC+TGG 0.408972 7_3:+74111919 Msa1123270:CDS
TCCTGGATGTCTGGGAAGAA+TGG 0.411228 7_3:+74110885 Msa1123270:CDS
CACATTTGGTGGACTATGCT+TGG 0.411823 7_3:-74111848 None:intergenic
TAGATGTCAACTCCTTCATA+TGG 0.415286 7_3:-74115145 None:intergenic
ATGATCGCGGTGCGGTTTAT+CGG 0.417070 7_3:-74110962 None:intergenic
ATTGACAAATCACCACCTAT+AGG 0.417115 7_3:+74114666 Msa1123270:CDS
GGATTAGAAAGTTCCTTAAT+GGG 0.418900 7_3:+74115044 Msa1123270:CDS
AACACCCATCAAGATGCTTA+TGG 0.422703 7_3:+74111798 Msa1123270:CDS
AGGACTGCAAGTCCTTCATT+TGG 0.422950 7_3:+74111528 Msa1123270:CDS
ATCATTGGCAGCTGGAAGAT+AGG 0.423993 7_3:+74111989 Msa1123270:CDS
CTTCCCAGACATCCAGGAAA+AGG 0.425373 7_3:-74110880 None:intergenic
TCATTGTCAACCATCTTTGA+AGG 0.425497 7_3:-74112372 None:intergenic
CCCTGAGGATGATGATCTAC+TGG 0.426970 7_3:+74112641 Msa1123270:CDS
CTAATGGAAATTACTGGTTA+CGG 0.428320 7_3:+74115023 Msa1123270:CDS
CAAGGAATAAGAAATCAATC+AGG 0.428854 7_3:+74113354 Msa1123270:CDS
AGAAAAGAGGTCGTGGGTAA+AGG 0.432505 7_3:+74115233 Msa1123270:CDS
GAGAGCGGAGTGGTTAGGTT+GGG 0.433479 7_3:-74110295 None:intergenic
GAAAAGAGGTCGTGGGTAAA+GGG 0.433603 7_3:+74115234 Msa1123270:CDS
CGTTCTTAAACCTTCAAAGA+TGG 0.433750 7_3:+74112362 Msa1123270:CDS
AGGTTCATTGTCATTGAGAT+TGG 0.436139 7_3:-74114925 None:intergenic
TCATCAACTTTCTGGCTGGC+TGG 0.437058 7_3:-74112489 None:intergenic
TTGTTTGTTCAAGACAGAAC+TGG 0.437718 7_3:-74113555 None:intergenic
TCCCTCAATGTTGGATCCAA+TGG 0.437770 7_3:-74114894 None:intergenic
CTGGAAATCCATGGCACCCT+GGG 0.438188 7_3:-74114392 None:intergenic
TACTGACGACTCAGGAGAAC+AGG 0.438301 7_3:-74112922 None:intergenic
TGTTTCTGCAACAGTTGATT+GGG 0.438657 7_3:-74113411 None:intergenic
AATGGGCAGGTTGTGGAGTG+GGG 0.440726 7_3:+74115061 Msa1123270:CDS
AGAGGGTGCACCTTCCCTAT+TGG 0.446379 7_3:+74115106 Msa1123270:CDS
TCCAACTCTTTGTGAATCAT+CGG 0.447252 7_3:+74113520 Msa1123270:CDS
GTATGAAATCATCATTTAAA+GGG 0.449006 7_3:+74113309 Msa1123270:CDS
AAGTAATAAATGAGTGGAAT+GGG 0.451237 7_3:+74110197 None:intergenic
TCTTCCACTGTCTATGAACA+TGG 0.453480 7_3:+74113215 Msa1123270:CDS
GTTCCTTAATGGGCAGGTTG+TGG 0.456811 7_3:+74115054 Msa1123270:CDS
GGGTGCACCTTCCCTATTGG+TGG 0.458374 7_3:+74115109 Msa1123270:CDS
CAAACAAGGCGTAATATCTC+TGG 0.459180 7_3:+74113571 Msa1123270:CDS
TCCAGTAGATCATCATCCTC+AGG 0.460373 7_3:-74112642 None:intergenic
TACAATCAAATCCACCAATA+GGG 0.462364 7_3:-74115120 None:intergenic
TCATGCGCCCTCACAGAACT+TGG 0.463375 7_3:-74112549 None:intergenic
TGGCATGAGGTCTGTTTGGG+GGG 0.464722 7_3:+74115169 Msa1123270:CDS
ACCATTCTTCCCAGACATCC+AGG 0.466011 7_3:-74110886 None:intergenic
AAGGTGCACCCTCTGATCCT+TGG 0.466050 7_3:-74115097 None:intergenic
CCAACTCTTTGTGAATCATC+GGG 0.468561 7_3:+74113521 Msa1123270:CDS
TCAGATCATGAGTGTACTGC+TGG 0.469320 7_3:+74112795 Msa1123270:CDS
TCTTCAAATAAGAAAGTAAA+CGG 0.469772 7_3:+74111775 Msa1123270:CDS
CCCGATGATTCACAAAGAGT+TGG 0.470013 7_3:-74113521 None:intergenic
TCTCTAATATCTGAGTTTGA+AGG 0.470227 7_3:+74113077 Msa1123270:CDS
ATGTTTCTGCAACAGTTGAT+TGG 0.470472 7_3:-74113412 None:intergenic
TAAACTCACCTGAAGTCCTT+AGG 0.471781 7_3:+74113447 Msa1123270:CDS
TTTGCTTCGTGTACAGGTTG+AGG 0.473135 7_3:-74114945 None:intergenic
ATGTCATTCCTAAGGACTTC+AGG 0.473201 7_3:-74113455 None:intergenic
CAGTGGTTGATTTGACAGGC+AGG 0.476740 7_3:+74115339 Msa1123270:CDS
AGAAACGACTTTCTGAAAGA+TGG 0.480531 7_3:+74112958 Msa1123270:CDS
TTGCAAGTTTCTTATTCTCA+AGG 0.482048 7_3:+74113336 Msa1123270:CDS
TGCTGAGAACAATCTCCTCC+AGG 0.483877 7_3:-74111937 None:intergenic
AAATGCAGCTCATGAGTCCT+TGG 0.484284 7_3:+74114472 Msa1123270:CDS
TACGTACTTTGTTTCGGCAG+AGG 0.487253 7_3:-74115555 None:intergenic
TTTGATTGTATCCCATATGA+AGG 0.487771 7_3:+74115133 Msa1123270:CDS
GTTCGAGCTATTGATCCTAT+AGG 0.487955 7_3:-74114681 None:intergenic
CACAAGAATCATCCCATGAG+AGG 0.492500 7_3:-74114704 None:intergenic
ACTGGAAATCCATGGCACCC+TGG 0.492769 7_3:-74114393 None:intergenic
TAAGCAACCTGTTCTCTGCT+CGG 0.492879 7_3:-74112045 None:intergenic
AACTATGTTCTCCCCGTGGA+AGG 0.495382 7_3:-74111897 None:intergenic
CATCTAGAATAAAACGAGTC+AGG 0.495507 7_3:-74114855 None:intergenic
GCATTCTCTTGAAAGTCCAT+TGG 0.496290 7_3:+74114878 Msa1123270:CDS
AAAGTAATAAATGAGTGGAA+TGG 0.496479 7_3:+74110196 None:intergenic
GGCCATGATGGCATCTAAGA+AGG 0.496988 7_3:+74112980 Msa1123270:CDS
TAGAAAGTTCCTTAATGGGC+AGG 0.497508 7_3:+74115048 Msa1123270:CDS
GGGAAGAAGATAGTCAGAAA+AGG 0.497801 7_3:+74110217 Msa1123270:five_prime_UTR
TCAACCCACTTCCGTCTCTC+CGG 0.501997 7_3:-74112129 None:intergenic
AGTTCATCCGAGCAGAGAAC+AGG 0.502239 7_3:+74112038 Msa1123270:CDS
TTGTGGGGACAGCAACAGCC+TGG 0.504126 7_3:+74115193 Msa1123270:CDS
CAATAGCTCGAACCCTCTCA+TGG 0.504147 7_3:+74114691 Msa1123270:CDS
CAGAAGGCTCCAAGGATCAG+AGG 0.505421 7_3:+74115088 Msa1123270:CDS
ATGGGCAGGTTGTGGAGTGG+GGG 0.511735 7_3:+74115062 Msa1123270:CDS
TGTTCAACCTACTCGAATAG+TGG 0.511840 7_3:+74112518 Msa1123270:CDS
ACGAAATCCCAAGAATGTCT+TGG 0.512601 7_3:-74112852 None:intergenic
TGGCTGGCTGGAGAGTATCC+AGG 0.512620 7_3:-74112477 None:intergenic
CAAGTCCTTCATTTGGTGAT+CGG 0.512783 7_3:+74111535 Msa1123270:CDS
GCGTATTTGTCCCTCAATGT+TGG 0.513145 7_3:-74114903 None:intergenic
GTGGCATGAGGTCTGTTTGG+GGG 0.513197 7_3:+74115168 Msa1123270:CDS
AAGAGGTCGTGGGTAAAGGG+TGG 0.514097 7_3:+74115237 Msa1123270:CDS
GATGCAGTGGTTGATTTGAC+AGG 0.514635 7_3:+74115335 Msa1123270:CDS
GGGCCTTGAAGCCCTTCCAC+GGG 0.514911 7_3:+74111885 Msa1123270:CDS
ATCATTCAATCATTGGCAGC+TGG 0.517231 7_3:+74111981 Msa1123270:CDS
TTCTGAAAGATGGGCCATGA+TGG 0.519187 7_3:+74112968 Msa1123270:CDS
TTCCTTGGACACGAAGGTAG+AGG 0.521100 7_3:+74114767 Msa1123270:CDS
TATGCGGAGAAGCTCTACCT+TGG 0.522381 7_3:+74113022 Msa1123270:CDS
GAGAGAGCGAACCTGGGAGG+AGG 0.522523 7_3:-74110363 None:intergenic
GAGACAAGACACCGGAGAGA+CGG 0.523593 7_3:+74112118 Msa1123270:CDS
ATGCGGAGAAGCTCTACCTT+GGG 0.524759 7_3:+74113023 Msa1123270:CDS
ATCCTCTACCTTCGTGTCCA+AGG 0.527264 7_3:-74114769 None:intergenic
TGAAATGGATATTTGGGTGA+AGG 0.527491 7_3:+74115277 Msa1123270:CDS
CTGATCCTTGGAGCCTTCTG+TGG 0.531016 7_3:-74115085 None:intergenic
TTAATGGGCAGGTTGTGGAG+TGG 0.533107 7_3:+74115059 Msa1123270:CDS
GAAGTCAATCAGATGTTTCG+AGG 0.533845 7_3:+74111508 Msa1123270:CDS
AAACTCATCAACTTTCTGGC+TGG 0.536053 7_3:-74112493 None:intergenic
TGGCACCCTGGGCTTTGACA+TGG 0.536764 7_3:-74114381 None:intergenic
GGACAGCAACAGCCTGGTGG+TGG 0.537553 7_3:+74115199 Msa1123270:CDS
AATTGACCATGTCAAAGCCC+AGG 0.538303 7_3:+74114375 Msa1123270:CDS
CATTAAATAATGATGTTGCG+TGG 0.538886 7_3:+74112442 Msa1123270:CDS
TGTCAAAGCCCAGGGTGCCA+TGG 0.539757 7_3:+74114384 Msa1123270:CDS
GAAACGACTTTCTGAAAGAT+GGG 0.541727 7_3:+74112959 Msa1123270:CDS
ATTTGGGTGAAGGAAGTAGA+GGG 0.542086 7_3:+74115287 Msa1123270:CDS
CAGAAATTACTATCAGCTGC+TGG 0.542214 7_3:+74114813 Msa1123270:CDS
ACCCTTCTTAGATGCCATCA+TGG 0.543657 7_3:-74112982 None:intergenic
CAAAGCAGTAAGCCACATCA+AGG 0.544060 7_3:-74115383 None:intergenic
TGGTCCATAAGCATCTTGAT+GGG 0.545473 7_3:-74111802 None:intergenic
TGTTGTCAGAAAAGAGGTCG+TGG 0.546009 7_3:+74115226 Msa1123270:CDS
CATCTTTGAAGGTTTAAGAA+CGG 0.546511 7_3:-74112361 None:intergenic
TCTATCCGATCACCAAATGA+AGG 0.546916 7_3:-74111540 None:intergenic
TTTGAGACATGTCATTCCTA+AGG 0.547159 7_3:-74113463 None:intergenic
ATGTTCTTGTGTAGGTGACT+AGG 0.549960 7_3:+74110805 Msa1123270:intron
AGATGTCAACTCCTTCATAT+GGG 0.551170 7_3:-74115144 None:intergenic
TTTGACAGGCAGGGTCTGAA+TGG 0.551726 7_3:+74115349 Msa1123270:exon
ATGGATTTCCAGTGAAAACC+AGG 0.555895 7_3:+74114403 Msa1123270:CDS
TTATCTATTCTGTAGGATCA+CGG 0.556529 7_3:+74114622 Msa1123270:intron
GAAGCTTGTAATAATGATGC+GGG 0.557322 7_3:+74113248 Msa1123270:CDS
AGTTAGGTGTTTGCGTCGCG+TGG 0.557525 7_3:-74110260 None:intergenic
AATGAAGGCTTTAATTGGTA+CGG 0.558472 7_3:-74114741 None:intergenic
AGTGGCATGAGGTCTGTTTG+GGG 0.558726 7_3:+74115167 Msa1123270:CDS
ATTAAATAATGATGTTGCGT+GGG 0.558891 7_3:+74112443 Msa1123270:CDS
CAAGCATAGTCCACCAAATG+TGG 0.559774 7_3:+74111849 Msa1123270:CDS
AGACACCGGAGAGACGGAAG+TGG 0.564265 7_3:+74112124 Msa1123270:CDS
TATCTATTCTGTAGGATCAC+GGG 0.566931 7_3:+74114623 Msa1123270:intron
AATCACCGTCTCCTCCTCCC+AGG 0.568166 7_3:+74110352 Msa1123270:five_prime_UTR
AAACCGCACCGCGATCATCA+TGG 0.568228 7_3:+74110967 Msa1123270:CDS
TGGGCCTTGAAGCCCTTCCA+CGG 0.568342 7_3:+74111884 Msa1123270:CDS
ACGTATATAAAGAATTGCAC+TGG 0.570569 7_3:+74115573 Msa1123270:three_prime_UTR
TCCATTGGATCCAACATTGA+GGG 0.571482 7_3:+74114893 Msa1123270:CDS
AGAACAGGAAGCGCGACTGA+AGG 0.571867 7_3:-74112907 None:intergenic
GCGAACCTGGGAGGAGGAGA+CGG 0.573265 7_3:-74110357 None:intergenic
AATGAAGAAATACGCGCAGA+TGG 0.575030 7_3:+74113152 Msa1123270:CDS
TGTATGAAGAGTGGTCAGCT+TGG 0.579242 7_3:+74114497 Msa1123270:CDS
CTTCCACTGTCTATGAACAT+GGG 0.579706 7_3:+74113216 Msa1123270:CDS
TTTGCGTCGCGTGGTCAGGT+CGG 0.580905 7_3:-74110251 None:intergenic
TCCCAAGAATGTCTTGGAGA+TGG 0.581007 7_3:-74112846 None:intergenic
TCATAGACAGTGGAAGAAAG+AGG 0.581535 7_3:-74113209 None:intergenic
GAAATTGCTAGAAGAACTTG+TGG 0.582282 7_3:+74115310 Msa1123270:CDS
TGACAACAGTCTCCACCACC+AGG 0.582793 7_3:-74115211 None:intergenic
GGAGACTGTTGTCAGAAAAG+AGG 0.585075 7_3:+74115220 Msa1123270:CDS
TCTAAAACTGAGATTGGACT+CGG 0.585099 7_3:-74114431 None:intergenic
GTGTCCAAGGAAACCAATGA+AGG 0.585519 7_3:-74114756 None:intergenic
ATGAAGGAGTTGACATCTAG+TGG 0.585872 7_3:+74115149 Msa1123270:CDS
GGCGCATGATATTAAGGACG+TGG 0.586726 7_3:+74112563 Msa1123270:CDS
AAGAGCAAGCATTTCGCCCA+AGG 0.589591 7_3:-74113039 None:intergenic
TCGCCTCAAAATCTGCAAAG+TGG 0.590172 7_3:+74112603 Msa1123270:CDS
AGATGTTAATGAGAAGAAGA+TGG 0.591198 7_3:+74112152 Msa1123270:CDS
AGAGGTCGTGGGTAAAGGGT+GGG 0.591528 7_3:+74115238 Msa1123270:CDS
TGAACGACAGTCTACTCCAC+TGG 0.592190 7_3:+74112320 Msa1123270:CDS
TATTAGAGATTTCTTCACAT+CGG 0.593412 7_3:-74113063 None:intergenic
TGAGAGGTTACGTCAATCAA+AGG 0.594820 7_3:+74112221 Msa1123270:CDS
ACTATGTTCTCCCCGTGGAA+GGG 0.595388 7_3:-74111896 None:intergenic
GGAAGATAGGTTTATGGACA+AGG 0.597062 7_3:+74112002 Msa1123270:CDS
GTCCATTGGATCCAACATTG+AGG 0.598130 7_3:+74114892 Msa1123270:CDS
AAGGAATAAGAAATCAATCA+GGG 0.598628 7_3:+74113355 Msa1123270:CDS
ACCACTCTTCATACAGTCCA+AGG 0.602273 7_3:-74114489 None:intergenic
AGAAGGCTCCAAGGATCAGA+GGG 0.603284 7_3:+74115089 Msa1123270:CDS
ATACGCTTTGTCTCAGCCAG+TGG 0.605299 7_3:-74112336 None:intergenic
ACCCAAAAGTAATAAATGAG+TGG 0.605523 7_3:+74110191 None:intergenic
AATAGCTCGAACCCTCTCAT+GGG 0.606897 7_3:+74114692 Msa1123270:CDS
ATCAAATCCACCAATAGGGA+AGG 0.613133 7_3:-74115116 None:intergenic
GCGGTGTCAAGAATAATACA+AGG 0.614607 7_3:+74110839 Msa1123270:CDS
TTTGGGTGAAGGAAGTAGAG+GGG 0.616565 7_3:+74115288 Msa1123270:CDS
AGTGGTTGATTTGACAGGCA+GGG 0.618183 7_3:+74115340 Msa1123270:CDS
TGAAGCTTGTAATAATGATG+CGG 0.618394 7_3:+74113247 Msa1123270:CDS
TGGGATTTCGTCAATCGCTG+TGG 0.619476 7_3:+74112864 Msa1123270:CDS
CATAGACAGTGGAAGAAAGA+GGG 0.621894 7_3:-74113208 None:intergenic
CCAGTAGATCATCATCCTCA+GGG 0.624721 7_3:-74112641 None:intergenic
TGATCGGATAGAAGATAAGC+CGG 0.625000 7_3:+74111551 Msa1123270:CDS
CAGATCATGAGTGTACTGCT+GGG 0.625206 7_3:+74112796 Msa1123270:CDS
TCTACTGGAATCGAGAAAAG+TGG 0.627261 7_3:+74112656 Msa1123270:CDS
GTTGAATTGAATCCTTGATG+TGG 0.627761 7_3:+74115371 Msa1123270:three_prime_UTR
ATTGAAGCCAAGTTCTGTGA+GGG 0.629173 7_3:+74112542 Msa1123270:CDS
ATTGACCATGTCAAAGCCCA+GGG 0.629405 7_3:+74114376 Msa1123270:CDS
GGGTAAAGCACACGACTCCA+AGG 0.629521 7_3:+74113268 Msa1123270:CDS
TTCAATACCACTATTCGAGT+AGG 0.629879 7_3:-74112525 None:intergenic
GGATGATTCTTGTGCAGAGG+TGG 0.629970 7_3:+74114713 Msa1123270:CDS
ATGGGATGATTCTTGTGCAG+AGG 0.630661 7_3:+74114710 Msa1123270:CDS
GCCATGATGGCATCTAAGAA+GGG 0.632007 7_3:+74112981 Msa1123270:CDS
AGTTCTGTCTTGAACAAACA+AGG 0.634033 7_3:+74113557 Msa1123270:CDS
GGGAGAACATAGTTTAGCTG+TGG 0.635253 7_3:+74111906 Msa1123270:CDS
GTCATCGCCAATATAGCCCG+TGG 0.636861 7_3:-74112757 None:intergenic
GCTGAGAACAATCTCCTCCA+GGG 0.636927 7_3:-74111936 None:intergenic
TATTTGGGTGAAGGAAGTAG+AGG 0.639162 7_3:+74115286 Msa1123270:CDS
CGAGCTATTGATCCTATAGG+TGG 0.641808 7_3:-74114678 None:intergenic
GACATGTCTCAAAGCTTCAA+CGG 0.642119 7_3:+74113473 Msa1123270:CDS
GAGCCCATGTTCATAGACAG+TGG 0.647571 7_3:-74113219 None:intergenic
TCTCTGCATACTGACGACTC+AGG 0.647856 7_3:-74112930 None:intergenic
TTCAAGAACAAAGACATATG+CGG 0.648321 7_3:+74113006 Msa1123270:CDS
ACAAGGCGTAATATCTCTGG+AGG 0.651319 7_3:+74113574 Msa1123270:CDS
ACAAGAATCATCCCATGAGA+GGG 0.652020 7_3:-74114703 None:intergenic
AGAGAGAGAGCGAACCTGGG+AGG 0.652757 7_3:-74110366 None:intergenic
ATTGCTAGAAGAACTTGTGG+AGG 0.652817 7_3:+74115313 Msa1123270:CDS
ATTCGATTATTATTAACACA+TGG 0.652999 7_3:+74115438 Msa1123270:three_prime_UTR
ATGTCTCAAAGCTTCAACGG+TGG 0.653007 7_3:+74113476 Msa1123270:CDS
TCCTTGGACTGTATGAAGAG+TGG 0.654292 7_3:+74114488 Msa1123270:CDS
GTTGTCAGAAAAGAGGTCGT+GGG 0.654455 7_3:+74115227 Msa1123270:CDS
AGCGTCTGTCTACAGATGAG+AGG 0.655922 7_3:+74112205 Msa1123270:CDS
GACACCGGAGAGACGGAAGT+GGG 0.664721 7_3:+74112125 Msa1123270:CDS
GGAAAATACTGAAGAATACA+CGG 0.665720 7_3:-74112736 None:intergenic
GCTGTGGAGAGAAGCCCTGG+AGG 0.667522 7_3:+74111922 Msa1123270:CDS
AGCAGATGCATGAAGACGCG+AGG 0.667681 7_3:+74112694 Msa1123270:CDS
TGACTAGGTGTTAAAATGAG+CGG 0.670205 7_3:+74110820 Msa1123270:exon
ATTGGTTTCCTTGGACACGA+AGG 0.675866 7_3:+74114761 Msa1123270:CDS
AGAACTTGTGGAGGATGCAG+TGG 0.678779 7_3:+74115322 Msa1123270:CDS
AAGCAAAGCGAAGACAGATG+AGG 0.679302 7_3:+74114961 Msa1123270:CDS
AGTTGACATCTAGTGGCATG+AGG 0.681876 7_3:+74115156 Msa1123270:CDS
GGCCTTGAAGCCCTTCCACG+GGG 0.685356 7_3:+74111886 Msa1123270:CDS
AGAGATGACCATGATGATCG+CGG 0.687608 7_3:-74110975 None:intergenic
TGGGGACAGCAACAGCCTGG+TGG 0.698797 7_3:+74115196 Msa1123270:CDS
CGGTGTCAAGAATAATACAA+GGG 0.705022 7_3:+74110840 Msa1123270:CDS
TATTGAAGCCAAGTTCTGTG+AGG 0.709640 7_3:+74112541 Msa1123270:CDS
TGACCATGATGATCGCGGTG+CGG 0.734287 7_3:-74110970 None:intergenic
AAACTTCTATCATGACCCTG+AGG 0.737959 7_3:+74112626 Msa1123270:CDS
CAATGTAAGAGACAAGACAC+CGG 0.748656 7_3:+74112110 Msa1123270:CDS
TGAGTCGTCAGTATGCAGAG+AGG 0.772849 7_3:+74112932 Msa1123270:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTTATTTTATGTTTTTTG+TGG + chr7_3:74110727-74110746 Msa1123270:intron 10.0%
!! TAATAATAATTAAAACTACA+AGG - chr7_3:74111221-74111240 None:intergenic 10.0%
!! TAGTAGTAGTAAAAATAAAA+GGG - chr7_3:74110536-74110555 None:intergenic 15.0%
!! ATAGTAGTAGTAAAAATAAA+AGG - chr7_3:74110537-74110556 None:intergenic 15.0%
!!! TTTCCTATTTTTTTAATAGT+GGG - chr7_3:74111261-74111280 None:intergenic 15.0%
!!! ATTTTTTTTTCCCATTTTTA+TGG + chr7_3:74111719-74111738 Msa1123270:intron 15.0%
!!! TTTTTTTTTCCCATTTTTAT+GGG + chr7_3:74111720-74111739 Msa1123270:intron 15.0%
!! ACAAAGATATTTATGAATTA+TGG + chr7_3:74112067-74112086 Msa1123270:CDS 15.0%
!! TTTAATAAATTAGGTTAAGT+AGG - chr7_3:74115465-74115484 None:intergenic 15.0%
!!! ATGTTTTTGTGTCTTTTTTA+AGG + chr7_3:74110753-74110772 Msa1123270:intron 20.0%
!! TAACCCACTATTAAAAAAAT+AGG + chr7_3:74111255-74111274 Msa1123270:intron 20.0%
!!! CTTTCCTATTTTTTTAATAG+TGG - chr7_3:74111262-74111281 None:intergenic 20.0%
!! TAAAAAAAAAAGCAATTGAC+CGG - chr7_3:74111362-74111381 None:intergenic 20.0%
!! GTCTGTAATAATAATAATTG+TGG + chr7_3:74111396-74111415 Msa1123270:intron 20.0%
!! TCTTCAAATAAGAAAGTAAA+CGG + chr7_3:74111775-74111794 Msa1123270:CDS 20.0%
!! AATGAAAAATTCTGTAGAAA+GGG + chr7_3:74112390-74112409 Msa1123270:CDS 20.0%
!! AGTATGAAATCATCATTTAA+AGG + chr7_3:74113308-74113327 Msa1123270:CDS 20.0%
!! GTATGAAATCATCATTTAAA+GGG + chr7_3:74113309-74113328 Msa1123270:CDS 20.0%
!! TTGAAATTTCTTGTCATTAT+TGG + chr7_3:74114583-74114602 Msa1123270:intron 20.0%
!! ATTCGATTATTATTAACACA+TGG + chr7_3:74115438-74115457 Msa1123270:three_prime_UTR 20.0%
!! TCAGTAGCATTTAATAAATT+AGG - chr7_3:74115474-74115493 None:intergenic 20.0%
!!! TTTATATACGTACTTTGTTT+CGG - chr7_3:74115564-74115583 None:intergenic 20.0%
!!! TAAAAGGGTTAGTTGATTTT+GGG - chr7_3:74110521-74110540 None:intergenic 25.0%
!!! ATAAAAGGGTTAGTTGATTT+TGG - chr7_3:74110522-74110541 None:intergenic 25.0%
! AAAAAACTGTAAATCTGAGA+AGG - chr7_3:74111001-74111020 None:intergenic 25.0%
! AAACCACAAACTAATGAATT+TGG - chr7_3:74111060-74111079 None:intergenic 25.0%
! ATTAAAACTACAAGGCAAAT+AGG - chr7_3:74111213-74111232 None:intergenic 25.0%
! AAAAAAAAAAGCAATTGACC+GGG - chr7_3:74111361-74111380 None:intergenic 25.0%
! ATAATGCAGTGAGATTAATA+TGG - chr7_3:74111460-74111479 None:intergenic 25.0%
!! ATTAATTTTGCAACCACATT+TGG - chr7_3:74111865-74111884 None:intergenic 25.0%
! AAATGTGGTTGCAAAATTAA+TGG + chr7_3:74111864-74111883 Msa1123270:CDS 25.0%
! AATGTGGTTGCAAAATTAAT+GGG + chr7_3:74111865-74111884 Msa1123270:CDS 25.0%
! CAATGAAAAATTCTGTAGAA+AGG + chr7_3:74112389-74112408 Msa1123270:CDS 25.0%
! ATTAAATAATGATGTTGCGT+GGG + chr7_3:74112443-74112462 Msa1123270:CDS 25.0%
! TATTAGAGATTTCTTCACAT+CGG - chr7_3:74113066-74113085 None:intergenic 25.0%
! AAGGAATAAGAAATCAATCA+GGG + chr7_3:74113355-74113374 Msa1123270:CDS 25.0%
! GAAATCCAAAATATGTTGTT+CGG + chr7_3:74113805-74113824 Msa1123270:intron 25.0%
! GTGTTAAGTGTTAATGAAAT+TGG + chr7_3:74114029-74114048 Msa1123270:intron 25.0%
!! TGTAAGCAAAACTATTTTCT+TGG + chr7_3:74114073-74114092 Msa1123270:intron 25.0%
!! GTAAGCAAAACTATTTTCTT+GGG + chr7_3:74114074-74114093 Msa1123270:intron 25.0%
!! TAAGCAAAACTATTTTCTTG+GGG + chr7_3:74114075-74114094 Msa1123270:intron 25.0%
! AATACCTGATGAATATCATA+GGG + chr7_3:74114131-74114150 Msa1123270:intron 25.0%
! AAATATGATCCAAGGATATA+TGG - chr7_3:74114268-74114287 None:intergenic 25.0%
! TTTGTTACAAATATGATCCA+AGG - chr7_3:74114276-74114295 None:intergenic 25.0%
ACAACAATGCAACTAACATA+AGG - chr7_3:74110635-74110654 None:intergenic 30.0%
AAGAGAACAGAAGTTAACAA+TGG - chr7_3:74110690-74110709 None:intergenic 30.0%
TTCTCTTAATTTCACGTGTT+TGG + chr7_3:74110703-74110722 Msa1123270:intron 30.0%
TTTGCATTTACAACAGTAGA+AGG - chr7_3:74110931-74110950 None:intergenic 30.0%
! CAACCAAATTCATTAGTTTG+TGG + chr7_3:74111054-74111073 Msa1123270:intron 30.0%
! AGTTTGTGGTTTTCTTTTGT+TGG + chr7_3:74111068-74111087 Msa1123270:intron 30.0%
! GTTTGTGGTTTTCTTTTGTT+GGG + chr7_3:74111069-74111088 Msa1123270:intron 30.0%
!!! TTGGGTTGTAGTATGTTTTT+TGG + chr7_3:74111087-74111106 Msa1123270:intron 30.0%
!!! TGGGTTGTAGTATGTTTTTT+GGG + chr7_3:74111088-74111107 Msa1123270:intron 30.0%
!!! TAGTATGTTTTTTGGGGTTA+TGG + chr7_3:74111095-74111114 Msa1123270:intron 30.0%
AACTCTATATTTCCCTAGTT+TGG + chr7_3:74111178-74111197 Msa1123270:intron 30.0%
AAGTCAGCTAAACACAAAAA+TGG - chr7_3:74111325-74111344 None:intergenic 30.0%
!!! ATAATTGTGGTTTTGTCTGT+TGG + chr7_3:74111409-74111428 Msa1123270:intron 30.0%
CAATTTCTTTGGACATTTCT+TGG - chr7_3:74111825-74111844 None:intergenic 30.0%
ATGCTTGGAAACAATTTCTT+TGG - chr7_3:74111836-74111855 None:intergenic 30.0%
AGATGTTAATGAGAAGAAGA+TGG + chr7_3:74112152-74112171 Msa1123270:CDS 30.0%
TCTTATACGCCAAAAATTCA+TGG + chr7_3:74112176-74112195 Msa1123270:CDS 30.0%
CTTTATTAACAGATCGTTGT+TGG - chr7_3:74112277-74112296 None:intergenic 30.0%
CGATCTGTTAATAAAGTTAC+TGG + chr7_3:74112281-74112300 Msa1123270:CDS 30.0%
! CATCTTTGAAGGTTTAAGAA+CGG - chr7_3:74112364-74112383 None:intergenic 30.0%
CACGCAACATCATTATTTAA+TGG - chr7_3:74112444-74112463 None:intergenic 30.0%
CATTAAATAATGATGTTGCG+TGG + chr7_3:74112442-74112461 Msa1123270:CDS 30.0%
GGAAAATACTGAAGAATACA+CGG - chr7_3:74112739-74112758 None:intergenic 30.0%
! GTATTCTTCAGTATTTTCCA+CGG + chr7_3:74112740-74112759 Msa1123270:CDS 30.0%
! TATTCTTCAGTATTTTCCAC+GGG + chr7_3:74112741-74112760 Msa1123270:CDS 30.0%
TTCAAGAACAAAGACATATG+CGG + chr7_3:74113006-74113025 Msa1123270:CDS 30.0%
TCTCTAATATCTGAGTTTGA+AGG + chr7_3:74113077-74113096 Msa1123270:CDS 30.0%
TGAAGCTTGTAATAATGATG+CGG + chr7_3:74113247-74113266 Msa1123270:CDS 30.0%
TTGCAAGTTTCTTATTCTCA+AGG + chr7_3:74113336-74113355 Msa1123270:CDS 30.0%
CAAGGAATAAGAAATCAATC+AGG + chr7_3:74113354-74113373 Msa1123270:CDS 30.0%
! ATTGTGCAAATTTTCTCCAT+TGG + chr7_3:74113628-74113647 Msa1123270:intron 30.0%
!! TTTATGAGTTAACTTGCCAA+TGG - chr7_3:74113647-74113666 None:intergenic 30.0%
GGGAACTAATTGAAATATTG+AGG + chr7_3:74113749-74113768 Msa1123270:intron 30.0%
! TACAACCGAACAACATATTT+TGG - chr7_3:74113813-74113832 None:intergenic 30.0%
AAATATGTTGTTCGGTTGTA+TGG + chr7_3:74113813-74113832 Msa1123270:intron 30.0%
GTTAATGAAATTGGATGACA+TGG + chr7_3:74114038-74114057 Msa1123270:intron 30.0%
! AACTATTTTCTTGGGGATTT+TGG + chr7_3:74114082-74114101 Msa1123270:intron 30.0%
GAATACCTGATGAATATCAT+AGG + chr7_3:74114130-74114149 Msa1123270:intron 30.0%
ACAGTCCTATTATTTATCAC+CGG - chr7_3:74114157-74114176 None:intergenic 30.0%
! ATAATAGGACTGTCTTTTCT+CGG + chr7_3:74114164-74114183 Msa1123270:intron 30.0%
AACTTAATGCCATATATCCT+TGG + chr7_3:74114256-74114275 Msa1123270:intron 30.0%
ACTTTATATGTACTCGAAGT+TGG + chr7_3:74114297-74114316 Msa1123270:intron 30.0%
AAGAACATGCTAAAATAGCA+AGG - chr7_3:74114561-74114580 None:intergenic 30.0%
TCGAATGTTATCTATTCTGT+AGG + chr7_3:74114615-74114634 Msa1123270:intron 30.0%
TTATCTATTCTGTAGGATCA+CGG + chr7_3:74114622-74114641 Msa1123270:intron 30.0%
! AATGAAGGCTTTAATTGGTA+CGG - chr7_3:74114744-74114763 None:intergenic 30.0%
! AAACCAATGAAGGCTTTAAT+TGG - chr7_3:74114749-74114768 None:intergenic 30.0%
! CTAATGGAAATTACTGGTTA+CGG + chr7_3:74115023-74115042 Msa1123270:CDS 30.0%
GGATTAGAAAGTTCCTTAAT+GGG + chr7_3:74115044-74115063 Msa1123270:CDS 30.0%
TACAATCAAATCCACCAATA+GGG - chr7_3:74115123-74115142 None:intergenic 30.0%
ATACAATCAAATCCACCAAT+AGG - chr7_3:74115124-74115143 None:intergenic 30.0%
TTTGATTGTATCCCATATGA+AGG + chr7_3:74115133-74115152 Msa1123270:CDS 30.0%
! TGGGATTTGAAATGGATATT+TGG + chr7_3:74115270-74115289 Msa1123270:CDS 30.0%
! GGGATTTGAAATGGATATTT+GGG + chr7_3:74115271-74115290 Msa1123270:CDS 30.0%
CAGAGGTGAAGATATTTAAT+AGG - chr7_3:74115541-74115560 None:intergenic 30.0%
AAGGAAAAGGAGAGAAGAAA+GGG - chr7_3:74110402-74110421 None:intergenic 35.0%
AAAGGAAAAGGAGAGAAGAA+AGG - chr7_3:74110403-74110422 None:intergenic 35.0%
!! GGTTAGTTGATTTTGGGAAA+AGG - chr7_3:74110515-74110534 None:intergenic 35.0%
! TCTACCTTTTCTTCTTCTTC+TGG + chr7_3:74110593-74110612 Msa1123270:intron 35.0%
! CTACCTTTTCTTCTTCTTCT+GGG + chr7_3:74110594-74110613 Msa1123270:intron 35.0%
ATACCCAGAAGAAGAAGAAA+AGG - chr7_3:74110600-74110619 None:intergenic 35.0%
! ATTGTTGTTCATTCCCTCTT+TGG + chr7_3:74110647-74110666 Msa1123270:intron 35.0%
ACAAGAACATCATGGTTAGT+TGG - chr7_3:74110795-74110814 None:intergenic 35.0%
TAACCATGATGTTCTTGTGT+AGG + chr7_3:74110797-74110816 Msa1123270:intron 35.0%
TGACTAGGTGTTAAAATGAG+CGG + chr7_3:74110820-74110839 Msa1123270:exon 35.0%
! CGGTGTCAAGAATAATACAA+GGG + chr7_3:74110840-74110859 Msa1123270:CDS 35.0%
!!! GGGTTGTAGTATGTTTTTTG+GGG + chr7_3:74111089-74111108 Msa1123270:intron 35.0%
TGGTACACTATAGAGAATAG+TGG + chr7_3:74111115-74111134 Msa1123270:intron 35.0%
GGTACACTATAGAGAATAGT+GGG + chr7_3:74111116-74111135 Msa1123270:intron 35.0%
! GCTTGTAGCTGTTGATTAAT+AGG + chr7_3:74111145-74111164 Msa1123270:intron 35.0%
! TAGGAAAGTGAGTTGAGTTA+TGG + chr7_3:74111274-74111293 Msa1123270:intron 35.0%
GACTTTAGCATCATAAAACC+CGG + chr7_3:74111340-74111359 Msa1123270:intron 35.0%
!! TTTTTGTCGATTGAGTTTGC+TGG + chr7_3:74111599-74111618 Msa1123270:intron 35.0%
!! TTTTGTCGATTGAGTTTGCT+GGG + chr7_3:74111600-74111619 Msa1123270:intron 35.0%
! AACGAGATGATAGTGTCATA+TGG + chr7_3:74111646-74111665 Msa1123270:intron 35.0%
TCTGCAAAGCCCATAAAAAT+GGG - chr7_3:74111732-74111751 None:intergenic 35.0%
ATCTGCAAAGCCCATAAAAA+TGG - chr7_3:74111733-74111752 None:intergenic 35.0%
! AATTTTGCAACCACATTTGG+TGG - chr7_3:74111862-74111881 None:intergenic 35.0%
! GCTTTGCTTCCATGAATTTT+TGG - chr7_3:74112188-74112207 None:intergenic 35.0%
GTTGGAGCTTAAAACTTCTA+AGG - chr7_3:74112259-74112278 None:intergenic 35.0%
CGTTCTTAAACCTTCAAAGA+TGG + chr7_3:74112362-74112381 Msa1123270:CDS 35.0%
TCATTGTCAACCATCTTTGA+AGG - chr7_3:74112375-74112394 None:intergenic 35.0%
TTCAATACCACTATTCGAGT+AGG - chr7_3:74112528-74112547 None:intergenic 35.0%
! TTTCCACTTTGCAGATTTTG+AGG - chr7_3:74112609-74112628 None:intergenic 35.0%
AATACACGGTTTCATCTCTT+TGG - chr7_3:74112725-74112744 None:intergenic 35.0%
!! TGCTGGGAATTTTAGTGATT+TGG + chr7_3:74112812-74112831 Msa1123270:CDS 35.0%
TCTTTCAGAAAGTCGTTTCT+TGG - chr7_3:74112958-74112977 None:intergenic 35.0%
! AGAAACGACTTTCTGAAAGA+TGG + chr7_3:74112958-74112977 Msa1123270:CDS 35.0%
! GAAACGACTTTCTGAAAGAT+GGG + chr7_3:74112959-74112978 Msa1123270:CDS 35.0%
CTGCAAGAAACAGATTCATT+TGG - chr7_3:74113122-74113141 None:intergenic 35.0%
GAAGCTTGTAATAATGATGC+GGG + chr7_3:74113248-74113267 Msa1123270:CDS 35.0%
! TGTTTCTGCAACAGTTGATT+GGG - chr7_3:74113414-74113433 None:intergenic 35.0%
! ATGTTTCTGCAACAGTTGAT+TGG - chr7_3:74113415-74113434 None:intergenic 35.0%
! TTTGAGACATGTCATTCCTA+AGG - chr7_3:74113466-74113485 None:intergenic 35.0%
TCCAACTCTTTGTGAATCAT+CGG + chr7_3:74113520-74113539 Msa1123270:CDS 35.0%
TTGTTTGTTCAAGACAGAAC+TGG - chr7_3:74113558-74113577 None:intergenic 35.0%
AGTTCTGTCTTGAACAAACA+AGG + chr7_3:74113557-74113576 Msa1123270:CDS 35.0%
GGCAAAAGGGAAAGAAAAAT+GGG + chr7_3:74113729-74113748 Msa1123270:intron 35.0%
! CTGTCATTTAATCTGTGTCT+AGG + chr7_3:74113840-74113859 Msa1123270:intron 35.0%
TACAACAGTGCAAGTTTCAA+GGG - chr7_3:74113970-74113989 None:intergenic 35.0%
AATGAAATTGGATGACATGG+TGG + chr7_3:74114041-74114060 Msa1123270:intron 35.0%
TCGACAACAAGAAATCAAAG+AGG - chr7_3:74114220-74114239 None:intergenic 35.0%
!! ACTCGAAGTTGGTAAGTAAA+TGG + chr7_3:74114308-74114327 Msa1123270:intron 35.0%
!! AAGTTGGTAAGTAAATGGAC+TGG + chr7_3:74114313-74114332 Msa1123270:intron 35.0%
! TCTAAAACTGAGATTGGACT+CGG - chr7_3:74114434-74114453 None:intergenic 35.0%
! GCATTTTCATCTTCAAATGG+AGG - chr7_3:74114458-74114477 None:intergenic 35.0%
! GCTGCATTTTCATCTTCAAA+TGG - chr7_3:74114461-74114480 None:intergenic 35.0%
ACATGCTAAAATAGCAAGGT+CGG - chr7_3:74114557-74114576 None:intergenic 35.0%
TATCTATTCTGTAGGATCAC+GGG + chr7_3:74114623-74114642 Msa1123270:intron 35.0%
ATTGACAAATCACCACCTAT+AGG + chr7_3:74114666-74114685 Msa1123270:CDS 35.0%
GTACCAATTAAAGCCTTCAT+TGG + chr7_3:74114743-74114762 Msa1123270:CDS 35.0%
! CATCTAGAATAAAACGAGTC+AGG - chr7_3:74114858-74114877 None:intergenic 35.0%
!! CTGACTCGTTTTATTCTAGA+TGG + chr7_3:74114856-74114875 Msa1123270:CDS 35.0%
AGGTTCATTGTCATTGAGAT+TGG - chr7_3:74114928-74114947 None:intergenic 35.0%
TTGTGTCAATGTTGCACTAA+TGG + chr7_3:74115007-74115026 Msa1123270:CDS 35.0%
GTTGCACTAATGGAAATTAC+TGG + chr7_3:74115017-74115036 Msa1123270:CDS 35.0%
! CGGATTAGAAAGTTCCTTAA+TGG + chr7_3:74115043-74115062 Msa1123270:CDS 35.0%
AGATGTCAACTCCTTCATAT+GGG - chr7_3:74115147-74115166 None:intergenic 35.0%
TAGATGTCAACTCCTTCATA+TGG - chr7_3:74115148-74115167 None:intergenic 35.0%
TGAGCTTATGGGATTTGAAA+TGG + chr7_3:74115262-74115281 Msa1123270:CDS 35.0%
TGAAATGGATATTTGGGTGA+AGG + chr7_3:74115277-74115296 Msa1123270:CDS 35.0%
GAAATTGCTAGAAGAACTTG+TGG + chr7_3:74115310-74115329 Msa1123270:CDS 35.0%
GTTGAATTGAATCCTTGATG+TGG + chr7_3:74115371-74115390 Msa1123270:three_prime_UTR 35.0%
GGGAAGAAGATAGTCAGAAA+AGG + chr7_3:74110217-74110236 Msa1123270:five_prime_UTR 40.0%
!! TGGGTTAGCTTAGCTAAGTT+AGG - chr7_3:74110279-74110298 None:intergenic 40.0%
! ATCTGGAATCTGGAAGGAAA+GGG - chr7_3:74110446-74110465 None:intergenic 40.0%
! ACATTGATCTGGAATCTGGA+AGG - chr7_3:74110452-74110471 None:intergenic 40.0%
! AACGACATTGATCTGGAATC+TGG - chr7_3:74110456-74110475 None:intergenic 40.0%
AATGAAACGCGGTGAAGAAA+GGG - chr7_3:74110482-74110501 None:intergenic 40.0%
GATAGCAACAGAATGAAACG+CGG - chr7_3:74110493-74110512 None:intergenic 40.0%
TGAAAGACGAGATCCAAAGA+GGG - chr7_3:74110663-74110682 None:intergenic 40.0%
! ACATCATGGTTAGTTGGTTG+TGG - chr7_3:74110789-74110808 None:intergenic 40.0%
TCACCTACACAAGAACATCA+TGG - chr7_3:74110803-74110822 None:intergenic 40.0%
ATGTTCTTGTGTAGGTGACT+AGG + chr7_3:74110805-74110824 Msa1123270:intron 40.0%
! GCGGTGTCAAGAATAATACA+AGG + chr7_3:74110839-74110858 Msa1123270:CDS 40.0%
! AAACCTTTTCCTGGATGTCT+GGG + chr7_3:74110877-74110896 Msa1123270:CDS 40.0%
! AGGAAAGTGCAACCAAACTA+GGG - chr7_3:74111193-74111212 None:intergenic 40.0%
! TAGGAAAGTGCAACCAAACT+AGG - chr7_3:74111194-74111213 None:intergenic 40.0%
GAAGTCAATCAGATGTTTCG+AGG + chr7_3:74111508-74111527 Msa1123270:CDS 40.0%
! CAAGTCCTTCATTTGGTGAT+CGG + chr7_3:74111535-74111554 Msa1123270:CDS 40.0%
TCTATCCGATCACCAAATGA+AGG - chr7_3:74111543-74111562 None:intergenic 40.0%
TGATCGGATAGAAGATAAGC+CGG + chr7_3:74111551-74111570 Msa1123270:CDS 40.0%
TAGAAGATAAGCCGGTAAGT+TGG + chr7_3:74111559-74111578 Msa1123270:intron 40.0%
AGTAATCCTCTCCAACTTAC+CGG - chr7_3:74111573-74111592 None:intergenic 40.0%
AACACCCATCAAGATGCTTA+TGG + chr7_3:74111798-74111817 Msa1123270:CDS 40.0%
TGGTCCATAAGCATCTTGAT+GGG - chr7_3:74111805-74111824 None:intergenic 40.0%
TTGGTCCATAAGCATCTTGA+TGG - chr7_3:74111806-74111825 None:intergenic 40.0%
CTGCGACATCATTCAATCAT+TGG + chr7_3:74111974-74111993 Msa1123270:CDS 40.0%
ATCATTCAATCATTGGCAGC+TGG + chr7_3:74111981-74112000 Msa1123270:CDS 40.0%
GGAAGATAGGTTTATGGACA+AGG + chr7_3:74112002-74112021 Msa1123270:CDS 40.0%
CAATGTAAGAGACAAGACAC+CGG + chr7_3:74112110-74112129 Msa1123270:CDS 40.0%
TGAGAGGTTACGTCAATCAA+AGG + chr7_3:74112221-74112240 Msa1123270:CDS 40.0%
! AAACTCATCAACTTTCTGGC+TGG - chr7_3:74112496-74112515 None:intergenic 40.0%
CAGCAAACTCATCAACTTTC+TGG - chr7_3:74112500-74112519 None:intergenic 40.0%
TGTTCAACCTACTCGAATAG+TGG + chr7_3:74112518-74112537 Msa1123270:CDS 40.0%
TATTGAAGCCAAGTTCTGTG+AGG + chr7_3:74112541-74112560 Msa1123270:CDS 40.0%
ATTGAAGCCAAGTTCTGTGA+GGG + chr7_3:74112542-74112561 Msa1123270:CDS 40.0%
!!! TTTTGAGGCGATGATACTGT+TGG - chr7_3:74112594-74112613 None:intergenic 40.0%
AAACTTCTATCATGACCCTG+AGG + chr7_3:74112626-74112645 Msa1123270:CDS 40.0%
TCTACTGGAATCGAGAAAAG+TGG + chr7_3:74112656-74112675 Msa1123270:CDS 40.0%
!! GTATTTTCCACGGGCTATAT+TGG + chr7_3:74112750-74112769 Msa1123270:CDS 40.0%
ACCATCTCCAAGACATTCTT+GGG + chr7_3:74112845-74112864 Msa1123270:CDS 40.0%
ACGAAATCCCAAGAATGTCT+TGG - chr7_3:74112855-74112874 None:intergenic 40.0%
CTGAAGGATGAAGACGAATA+AGG - chr7_3:74112894-74112913 None:intergenic 40.0%
AATGAAGAAATACGCGCAGA+TGG + chr7_3:74113152-74113171 Msa1123270:CDS 40.0%
! TTTGACCTGGGAAGGTTTTT+AGG - chr7_3:74113182-74113201 None:intergenic 40.0%
CATAGACAGTGGAAGAAAGA+GGG - chr7_3:74113211-74113230 None:intergenic 40.0%
TCATAGACAGTGGAAGAAAG+AGG - chr7_3:74113212-74113231 None:intergenic 40.0%
TCTTCCACTGTCTATGAACA+TGG + chr7_3:74113215-74113234 Msa1123270:CDS 40.0%
CTTCCACTGTCTATGAACAT+GGG + chr7_3:74113216-74113235 Msa1123270:CDS 40.0%
AGGACTTCAGGTGAGTTTAT+TGG - chr7_3:74113446-74113465 None:intergenic 40.0%
TAAACTCACCTGAAGTCCTT+AGG + chr7_3:74113447-74113466 Msa1123270:CDS 40.0%
ATGTCATTCCTAAGGACTTC+AGG - chr7_3:74113458-74113477 None:intergenic 40.0%
GACATGTCTCAAAGCTTCAA+CGG + chr7_3:74113473-74113492 Msa1123270:CDS 40.0%
CCAACTCTTTGTGAATCATC+GGG + chr7_3:74113521-74113540 Msa1123270:CDS 40.0%
CAAACAAGGCGTAATATCTC+TGG + chr7_3:74113571-74113590 Msa1123270:CDS 40.0%
GTTGAGCAACTAAGAAAAGG+TGG - chr7_3:74113684-74113703 None:intergenic 40.0%
GGGCAAAAGGGAAAGAAAAA+TGG + chr7_3:74113728-74113747 Msa1123270:intron 40.0%
CTACAACAGTGCAAGTTTCA+AGG - chr7_3:74113971-74113990 None:intergenic 40.0%
! TCGTATGTGTTGTTGCTTCA+TGG + chr7_3:74113997-74114016 Msa1123270:intron 40.0%
!! TTGGGGATTTTGGTATGTGT+CGG + chr7_3:74114092-74114111 Msa1123270:intron 40.0%
TAGGGCCGGTGATAAATAAT+AGG + chr7_3:74114149-74114168 Msa1123270:intron 40.0%
! TGGTTTTCACTGGAAATCCA+TGG - chr7_3:74114404-74114423 None:intergenic 40.0%
ATGGATTTCCAGTGAAAACC+AGG + chr7_3:74114403-74114422 Msa1123270:CDS 40.0%
!! GGAGGTTCTAAAACTGAGAT+TGG - chr7_3:74114440-74114459 None:intergenic 40.0%
CATGCTAAAATAGCAAGGTC+GGG - chr7_3:74114556-74114575 None:intergenic 40.0%
GTTCGAGCTATTGATCCTAT+AGG - chr7_3:74114684-74114703 None:intergenic 40.0%
ACAAGAATCATCCCATGAGA+GGG - chr7_3:74114706-74114725 None:intergenic 40.0%
!! AAAGCCTTCATTGGTTTCCT+TGG + chr7_3:74114752-74114771 Msa1123270:CDS 40.0%
CAGAAATTACTATCAGCTGC+TGG + chr7_3:74114813-74114832 Msa1123270:CDS 40.0%
GCATTCTCTTGAAAGTCCAT+TGG + chr7_3:74114878-74114897 Msa1123270:CDS 40.0%
TCCATTGGATCCAACATTGA+GGG + chr7_3:74114893-74114912 Msa1123270:CDS 40.0%
! TAGAAAGTTCCTTAATGGGC+AGG + chr7_3:74115048-74115067 Msa1123270:CDS 40.0%
ATCAAATCCACCAATAGGGA+AGG - chr7_3:74115119-74115138 None:intergenic 40.0%
ATGAAGGAGTTGACATCTAG+TGG + chr7_3:74115149-74115168 Msa1123270:CDS 40.0%
TATTTGGGTGAAGGAAGTAG+AGG + chr7_3:74115286-74115305 Msa1123270:CDS 40.0%
ATTTGGGTGAAGGAAGTAGA+GGG + chr7_3:74115287-74115306 Msa1123270:CDS 40.0%
ATTGCTAGAAGAACTTGTGG+AGG + chr7_3:74115313-74115332 Msa1123270:CDS 40.0%
AAAGAGAGAGAGAGAGAGAG+CGG - chr7_3:74110313-74110332 None:intergenic 45.0%
GTGGAGGGAGAAAAAGGAAA+AGG - chr7_3:74110415-74110434 None:intergenic 45.0%
! TCTGGAATCTGGAAGGAAAG+GGG - chr7_3:74110445-74110464 None:intergenic 45.0%
! GATCTGGAATCTGGAAGGAA+AGG - chr7_3:74110447-74110466 None:intergenic 45.0%
AGGGGAAAACGACATTGATC+TGG - chr7_3:74110463-74110482 None:intergenic 45.0%
ATGAAACGCGGTGAAGAAAG+GGG - chr7_3:74110481-74110500 None:intergenic 45.0%
GAATGAAACGCGGTGAAGAA+AGG - chr7_3:74110483-74110502 None:intergenic 45.0%
GTGAAAGACGAGATCCAAAG+AGG - chr7_3:74110664-74110683 None:intergenic 45.0%
! GCTGATGACAAACCTTTTCC+TGG + chr7_3:74110868-74110887 Msa1123270:CDS 45.0%
! CAAACCTTTTCCTGGATGTC+TGG + chr7_3:74110876-74110895 Msa1123270:CDS 45.0%
AGAGATGACCATGATGATCG+CGG - chr7_3:74110978-74110997 None:intergenic 45.0%
AGGACTGCAAGTCCTTCATT+TGG + chr7_3:74111528-74111547 Msa1123270:CDS 45.0%
AACAAGTACAGCAAAGCACG+TGG - chr7_3:74111696-74111715 None:intergenic 45.0%
!! CACATTTGGTGGACTATGCT+TGG - chr7_3:74111851-74111870 None:intergenic 45.0%
CAAGCATAGTCCACCAAATG+TGG + chr7_3:74111849-74111868 Msa1123270:CDS 45.0%
GGGAGAACATAGTTTAGCTG+TGG + chr7_3:74111906-74111925 Msa1123270:CDS 45.0%
ATCATTGGCAGCTGGAAGAT+AGG + chr7_3:74111989-74112008 Msa1123270:CDS 45.0%
GCAGCTGGAAGATAGGTTTA+TGG + chr7_3:74111996-74112015 Msa1123270:CDS 45.0%
TAAGCAACCTGTTCTCTGCT+CGG - chr7_3:74112048-74112067 None:intergenic 45.0%
! TGTGAGGGCGCATGATATTA+AGG + chr7_3:74112557-74112576 Msa1123270:CDS 45.0%
TCGCCTCAAAATCTGCAAAG+TGG + chr7_3:74112603-74112622 Msa1123270:CDS 45.0%
CCAGTAGATCATCATCCTCA+GGG - chr7_3:74112644-74112663 None:intergenic 45.0%
TCCAGTAGATCATCATCCTC+AGG - chr7_3:74112645-74112664 None:intergenic 45.0%
TCAGATCATGAGTGTACTGC+TGG + chr7_3:74112795-74112814 Msa1123270:CDS 45.0%
CAGATCATGAGTGTACTGCT+GGG + chr7_3:74112796-74112815 Msa1123270:CDS 45.0%
CACCATCTCCAAGACATTCT+TGG + chr7_3:74112844-74112863 Msa1123270:CDS 45.0%
TCCCAAGAATGTCTTGGAGA+TGG - chr7_3:74112849-74112868 None:intergenic 45.0%
! TTCTGAAAGATGGGCCATGA+TGG + chr7_3:74112968-74112987 Msa1123270:CDS 45.0%
GCCATGATGGCATCTAAGAA+GGG + chr7_3:74112981-74113000 Msa1123270:CDS 45.0%
ACCCTTCTTAGATGCCATCA+TGG - chr7_3:74112985-74113004 None:intergenic 45.0%
GTTCTCCTAAAAACCTTCCC+AGG + chr7_3:74113174-74113193 Msa1123270:CDS 45.0%
!! AGAGGGACAGATTTTGACCT+GGG - chr7_3:74113194-74113213 None:intergenic 45.0%
!! AAGAGGGACAGATTTTGACC+TGG - chr7_3:74113195-74113214 None:intergenic 45.0%
! CTTTGACTTTGTCAGCTCCT+TGG - chr7_3:74113288-74113307 None:intergenic 45.0%
ATGTCTCAAAGCTTCAACGG+TGG + chr7_3:74113476-74113495 Msa1123270:CDS 45.0%
CCCGATGATTCACAAAGAGT+TGG - chr7_3:74113524-74113543 None:intergenic 45.0%
ACAAGGCGTAATATCTCTGG+AGG + chr7_3:74113574-74113593 Msa1123270:CDS 45.0%
GGGGTTGAGCAACTAAGAAA+AGG - chr7_3:74113687-74113706 None:intergenic 45.0%
AGCACAAACTTACGTCTGGA+TGG - chr7_3:74113921-74113940 None:intergenic 45.0%
! AGAGAGCACAAACTTACGTC+TGG - chr7_3:74113925-74113944 None:intergenic 45.0%
GAAATTGGATGACATGGTGG+CGG + chr7_3:74114044-74114063 Msa1123270:intron 45.0%
AAATTGGATGACATGGTGGC+GGG + chr7_3:74114045-74114064 Msa1123270:intron 45.0%
CCTGATGAATATCATAGGGC+CGG + chr7_3:74114135-74114154 Msa1123270:intron 45.0%
! GGCTTTGACATGGTCAATTC+AGG - chr7_3:74114374-74114393 None:intergenic 45.0%
AATTGACCATGTCAAAGCCC+AGG + chr7_3:74114375-74114394 Msa1123270:CDS 45.0%
ATTGACCATGTCAAAGCCCA+GGG + chr7_3:74114376-74114395 Msa1123270:CDS 45.0%
AAATGCAGCTCATGAGTCCT+TGG + chr7_3:74114472-74114491 Msa1123270:CDS 45.0%
TCCTTGGACTGTATGAAGAG+TGG + chr7_3:74114488-74114507 Msa1123270:CDS 45.0%
ACCACTCTTCATACAGTCCA+AGG - chr7_3:74114492-74114511 None:intergenic 45.0%
TGTATGAAGAGTGGTCAGCT+TGG + chr7_3:74114497-74114516 Msa1123270:CDS 45.0%
CGAGCTATTGATCCTATAGG+TGG - chr7_3:74114681-74114700 None:intergenic 45.0%
AATAGCTCGAACCCTCTCAT+GGG + chr7_3:74114692-74114711 Msa1123270:CDS 45.0%
CACAAGAATCATCCCATGAG+AGG - chr7_3:74114707-74114726 None:intergenic 45.0%
ATGGGATGATTCTTGTGCAG+AGG + chr7_3:74114710-74114729 Msa1123270:CDS 45.0%
GTGTCCAAGGAAACCAATGA+AGG - chr7_3:74114759-74114778 None:intergenic 45.0%
! ATTGGTTTCCTTGGACACGA+AGG + chr7_3:74114761-74114780 Msa1123270:CDS 45.0%
GTCCATTGGATCCAACATTG+AGG + chr7_3:74114892-74114911 Msa1123270:CDS 45.0%
TCCCTCAATGTTGGATCCAA+TGG - chr7_3:74114897-74114916 None:intergenic 45.0%
GCGTATTTGTCCCTCAATGT+TGG - chr7_3:74114906-74114925 None:intergenic 45.0%
TTTGCTTCGTGTACAGGTTG+AGG - chr7_3:74114948-74114967 None:intergenic 45.0%
AAGCAAAGCGAAGACAGATG+AGG + chr7_3:74114961-74114980 Msa1123270:CDS 45.0%
AGTTGACATCTAGTGGCATG+AGG + chr7_3:74115156-74115175 Msa1123270:CDS 45.0%
TAGTGGCATGAGGTCTGTTT+GGG + chr7_3:74115166-74115185 Msa1123270:CDS 45.0%
GGAGACTGTTGTCAGAAAAG+AGG + chr7_3:74115220-74115239 Msa1123270:CDS 45.0%
TGTTGTCAGAAAAGAGGTCG+TGG + chr7_3:74115226-74115245 Msa1123270:CDS 45.0%
GTTGTCAGAAAAGAGGTCGT+GGG + chr7_3:74115227-74115246 Msa1123270:CDS 45.0%
AGAAAAGAGGTCGTGGGTAA+AGG + chr7_3:74115233-74115252 Msa1123270:CDS 45.0%
GAAAAGAGGTCGTGGGTAAA+GGG + chr7_3:74115234-74115253 Msa1123270:CDS 45.0%
!! TAAAGGGTGGGTTGAGCTTA+TGG + chr7_3:74115250-74115269 Msa1123270:CDS 45.0%
!! AAAGGGTGGGTTGAGCTTAT+GGG + chr7_3:74115251-74115270 Msa1123270:CDS 45.0%
TTTGGGTGAAGGAAGTAGAG+GGG + chr7_3:74115288-74115307 Msa1123270:CDS 45.0%
!! GATGCAGTGGTTGATTTGAC+AGG + chr7_3:74115335-74115354 Msa1123270:CDS 45.0%
!! AGTGGTTGATTTGACAGGCA+GGG + chr7_3:74115340-74115359 Msa1123270:CDS 45.0%
CAAAGCAGTAAGCCACATCA+AGG - chr7_3:74115386-74115405 None:intergenic 45.0%
! TACGTACTTTGTTTCGGCAG+AGG - chr7_3:74115558-74115577 None:intergenic 45.0%
ATGTCGGTGGAGGGAGAAAA+AGG - chr7_3:74110421-74110440 None:intergenic 50.0%
CTGGAAGGAAAGGGGAATGT+CGG - chr7_3:74110437-74110456 None:intergenic 50.0%
CTTCCCAGACATCCAGGAAA+AGG - chr7_3:74110883-74110902 None:intergenic 50.0%
TCCTGGATGTCTGGGAAGAA+TGG + chr7_3:74110885-74110904 Msa1123270:CDS 50.0%
ACCATTCTTCCCAGACATCC+AGG - chr7_3:74110889-74110908 None:intergenic 50.0%
ATGATCGCGGTGCGGTTTAT+CGG - chr7_3:74110965-74110984 None:intergenic 50.0%
! GATAAGCCGGTAAGTTGGAG+AGG + chr7_3:74111564-74111583 Msa1123270:intron 50.0%
ACTATGTTCTCCCCGTGGAA+GGG - chr7_3:74111899-74111918 None:intergenic 50.0%
AACTATGTTCTCCCCGTGGA+AGG - chr7_3:74111900-74111919 None:intergenic 50.0%
GCTAAACTATGTTCTCCCCG+TGG - chr7_3:74111904-74111923 None:intergenic 50.0%
GCTGAGAACAATCTCCTCCA+GGG - chr7_3:74111939-74111958 None:intergenic 50.0%
TGCTGAGAACAATCTCCTCC+AGG - chr7_3:74111940-74111959 None:intergenic 50.0%
AGTTCATCCGAGCAGAGAAC+AGG + chr7_3:74112038-74112057 Msa1123270:CDS 50.0%
AGCGTCTGTCTACAGATGAG+AGG + chr7_3:74112205-74112224 Msa1123270:CDS 50.0%
TGAACGACAGTCTACTCCAC+TGG + chr7_3:74112320-74112339 Msa1123270:CDS 50.0%
ATACGCTTTGTCTCAGCCAG+TGG - chr7_3:74112339-74112358 None:intergenic 50.0%
GCGTGGGAGAAAAATAGTCC+TGG + chr7_3:74112459-74112478 Msa1123270:CDS 50.0%
!! TCATCAACTTTCTGGCTGGC+TGG - chr7_3:74112492-74112511 None:intergenic 50.0%
GGCGCATGATATTAAGGACG+TGG + chr7_3:74112563-74112582 Msa1123270:CDS 50.0%
CCCTGAGGATGATGATCTAC+TGG + chr7_3:74112641-74112660 Msa1123270:CDS 50.0%
TGGGATTTCGTCAATCGCTG+TGG + chr7_3:74112864-74112883 Msa1123270:CDS 50.0%
TACTGACGACTCAGGAGAAC+AGG - chr7_3:74112925-74112944 None:intergenic 50.0%
TCTCTGCATACTGACGACTC+AGG - chr7_3:74112933-74112952 None:intergenic 50.0%
TGAGTCGTCAGTATGCAGAG+AGG + chr7_3:74112932-74112951 Msa1123270:CDS 50.0%
GGCCATGATGGCATCTAAGA+AGG + chr7_3:74112980-74112999 Msa1123270:CDS 50.0%
TATGCGGAGAAGCTCTACCT+TGG + chr7_3:74113022-74113041 Msa1123270:CDS 50.0%
ATGCGGAGAAGCTCTACCTT+GGG + chr7_3:74113023-74113042 Msa1123270:CDS 50.0%
AAGAGCAAGCATTTCGCCCA+AGG - chr7_3:74113042-74113061 None:intergenic 50.0%
!! GGACAGATTTTGACCTGGGA+AGG - chr7_3:74113190-74113209 None:intergenic 50.0%
GAGCCCATGTTCATAGACAG+TGG - chr7_3:74113222-74113241 None:intergenic 50.0%
! TTCCCTTTTGCCCTATCGCA+GGG - chr7_3:74113721-74113740 None:intergenic 50.0%
! TTTCCCTTTTGCCCTATCGC+AGG - chr7_3:74113722-74113741 None:intergenic 50.0%
ACGTCTGGATGGTGAAGAAG+TGG - chr7_3:74113910-74113929 None:intergenic 50.0%
CCGGCCCTATGATATTCATC+AGG - chr7_3:74114138-74114157 None:intergenic 50.0%
CAATAGCTCGAACCCTCTCA+TGG + chr7_3:74114691-74114710 Msa1123270:CDS 50.0%
GGATGATTCTTGTGCAGAGG+TGG + chr7_3:74114713-74114732 Msa1123270:CDS 50.0%
TTCCTTGGACACGAAGGTAG+AGG + chr7_3:74114767-74114786 Msa1123270:CDS 50.0%
ATCCTCTACCTTCGTGTCCA+AGG - chr7_3:74114772-74114791 None:intergenic 50.0%
CTTCGCTTTGCTTCGTGTAC+AGG - chr7_3:74114954-74114973 None:intergenic 50.0%
! GTTCCTTAATGGGCAGGTTG+TGG + chr7_3:74115054-74115073 Msa1123270:CDS 50.0%
ACTCCACAACCTGCCCATTA+AGG - chr7_3:74115060-74115079 None:intergenic 50.0%
! TTAATGGGCAGGTTGTGGAG+TGG + chr7_3:74115059-74115078 Msa1123270:CDS 50.0%
! TAATGGGCAGGTTGTGGAGT+GGG + chr7_3:74115060-74115079 Msa1123270:CDS 50.0%
AGAAGGCTCCAAGGATCAGA+GGG + chr7_3:74115089-74115108 Msa1123270:CDS 50.0%
CTAGTGGCATGAGGTCTGTT+TGG + chr7_3:74115165-74115184 Msa1123270:CDS 50.0%
AGTGGCATGAGGTCTGTTTG+GGG + chr7_3:74115167-74115186 Msa1123270:CDS 50.0%
AGAACTTGTGGAGGATGCAG+TGG + chr7_3:74115322-74115341 Msa1123270:CDS 50.0%
!! CAGTGGTTGATTTGACAGGC+AGG + chr7_3:74115339-74115358 Msa1123270:CDS 50.0%
TTTGACAGGCAGGGTCTGAA+TGG + chr7_3:74115349-74115368 Msa1123270:exon 50.0%
AGTTAGGTGTTTGCGTCGCG+TGG - chr7_3:74110263-74110282 None:intergenic 55.0%
GAGAGCGGAGTGGTTAGGTT+GGG - chr7_3:74110298-74110317 None:intergenic 55.0%
AGAGAGCGGAGTGGTTAGGT+TGG - chr7_3:74110299-74110318 None:intergenic 55.0%
AGAGAGAGAGCGGAGTGGTT+AGG - chr7_3:74110303-74110322 None:intergenic 55.0%
GAGAGAGAGAGAGCGAACCT+GGG - chr7_3:74110372-74110391 None:intergenic 55.0%
AGAGAGAGAGAGAGCGAACC+TGG - chr7_3:74110373-74110392 None:intergenic 55.0%
GAAAGGGGAATGTCGGTGGA+GGG - chr7_3:74110430-74110449 None:intergenic 55.0%
GAAGGAAAGGGGAATGTCGG+TGG - chr7_3:74110434-74110453 None:intergenic 55.0%
AAACCGCACCGCGATCATCA+TGG + chr7_3:74110967-74110986 Msa1123270:CDS 55.0%
TGACCATGATGATCGCGGTG+CGG - chr7_3:74110973-74110992 None:intergenic 55.0%
TTAGCTGTGGAGAGAAGCCC+TGG + chr7_3:74111919-74111938 Msa1123270:CDS 55.0%
GAGACAAGACACCGGAGAGA+CGG + chr7_3:74112118-74112137 Msa1123270:CDS 55.0%
TCAACCCACTTCCGTCTCTC+CGG - chr7_3:74112132-74112151 None:intergenic 55.0%
TCATGCGCCCTCACAGAACT+TGG - chr7_3:74112552-74112571 None:intergenic 55.0%
AGCAGATGCATGAAGACGCG+AGG + chr7_3:74112694-74112713 Msa1123270:CDS 55.0%
GTCATCGCCAATATAGCCCG+TGG - chr7_3:74112760-74112779 None:intergenic 55.0%
! AGAACAGGAAGCGCGACTGA+AGG - chr7_3:74112910-74112929 None:intergenic 55.0%
GGGTAAAGCACACGACTCCA+AGG + chr7_3:74113268-74113287 Msa1123270:CDS 55.0%
AGCTTCAACGGTGGCTTCTC+TGG + chr7_3:74113485-74113504 Msa1123270:CDS 55.0%
TATCGCAGGGGAAGAGAGGA+GGG - chr7_3:74113708-74113727 None:intergenic 55.0%
TCCTCTCTTCCCCTGCGATA+GGG + chr7_3:74113708-74113727 Msa1123270:intron 55.0%
TTCCCCTGCGATAGGGCAAA+AGG + chr7_3:74113715-74113734 Msa1123270:intron 55.0%
TCCCCTGCGATAGGGCAAAA+GGG + chr7_3:74113716-74113735 Msa1123270:intron 55.0%
! TCCCTTTTGCCCTATCGCAG+GGG - chr7_3:74113720-74113739 None:intergenic 55.0%
CTGGAAATCCATGGCACCCT+GGG - chr7_3:74114395-74114414 None:intergenic 55.0%
ACTGGAAATCCATGGCACCC+TGG - chr7_3:74114396-74114415 None:intergenic 55.0%
!! CGGCTGATCCTGGTTTTCAC+TGG - chr7_3:74114414-74114433 None:intergenic 55.0%
AGATTGGACTCGGCTGATCC+TGG - chr7_3:74114424-74114443 None:intergenic 55.0%
AATGGGCAGGTTGTGGAGTG+GGG + chr7_3:74115061-74115080 Msa1123270:CDS 55.0%
CTGATCCTTGGAGCCTTCTG+TGG - chr7_3:74115088-74115107 None:intergenic 55.0%
CAGAAGGCTCCAAGGATCAG+AGG + chr7_3:74115088-74115107 Msa1123270:CDS 55.0%
AAGGTGCACCCTCTGATCCT+TGG - chr7_3:74115100-74115119 None:intergenic 55.0%
! AGAGGGTGCACCTTCCCTAT+TGG + chr7_3:74115106-74115125 Msa1123270:CDS 55.0%
GTGGCATGAGGTCTGTTTGG+GGG + chr7_3:74115168-74115187 Msa1123270:CDS 55.0%
TGGCATGAGGTCTGTTTGGG+GGG + chr7_3:74115169-74115188 Msa1123270:CDS 55.0%
AGGTCTGTTTGGGGGGATTG+TGG + chr7_3:74115176-74115195 Msa1123270:CDS 55.0%
GGTCTGTTTGGGGGGATTGT+GGG + chr7_3:74115177-74115196 Msa1123270:CDS 55.0%
GTCTGTTTGGGGGGATTGTG+GGG + chr7_3:74115178-74115197 Msa1123270:CDS 55.0%
TGACAACAGTCTCCACCACC+AGG - chr7_3:74115214-74115233 None:intergenic 55.0%
AAGAGGTCGTGGGTAAAGGG+TGG + chr7_3:74115237-74115256 Msa1123270:CDS 55.0%
AGAGGTCGTGGGTAAAGGGT+GGG + chr7_3:74115238-74115257 Msa1123270:CDS 55.0%
TTTGCGTCGCGTGGTCAGGT+CGG - chr7_3:74110254-74110273 None:intergenic 60.0%
GAGAGAGAGAGAGAGCGGAG+TGG - chr7_3:74110308-74110327 None:intergenic 60.0%
AATCACCGTCTCCTCCTCCC+AGG + chr7_3:74110352-74110371 Msa1123270:five_prime_UTR 60.0%
AGAGAGAGAGCGAACCTGGG+AGG - chr7_3:74110369-74110388 None:intergenic 60.0%
GGAAAGGGGAATGTCGGTGG+AGG - chr7_3:74110431-74110450 None:intergenic 60.0%
TGGGCCTTGAAGCCCTTCCA+CGG + chr7_3:74111884-74111903 Msa1123270:CDS 60.0%
AGACACCGGAGAGACGGAAG+TGG + chr7_3:74112124-74112143 Msa1123270:CDS 60.0%
GACACCGGAGAGACGGAAGT+GGG + chr7_3:74112125-74112144 Msa1123270:CDS 60.0%
!! TGGCTGGCTGGAGAGTATCC+AGG - chr7_3:74112480-74112499 None:intergenic 60.0%
ATCGCAGGGGAAGAGAGGAG+GGG - chr7_3:74113707-74113726 None:intergenic 60.0%
CTATCGCAGGGGAAGAGAGG+AGG - chr7_3:74113709-74113728 None:intergenic 60.0%
CTCCTCTCTTCCCCTGCGAT+AGG + chr7_3:74113707-74113726 Msa1123270:intron 60.0%
! TGGCACCCTGGGCTTTGACA+TGG - chr7_3:74114384-74114403 None:intergenic 60.0%
! TGTCAAAGCCCAGGGTGCCA+TGG + chr7_3:74114384-74114403 Msa1123270:CDS 60.0%
ATGGGCAGGTTGTGGAGTGG+GGG + chr7_3:74115062-74115081 Msa1123270:CDS 60.0%
GGGTGCACCTTCCCTATTGG+TGG + chr7_3:74115109-74115128 Msa1123270:CDS 60.0%
TTGTGGGGACAGCAACAGCC+TGG + chr7_3:74115193-74115212 Msa1123270:CDS 60.0%
GGTGTTTGCGTCGCGTGGTC+AGG - chr7_3:74110258-74110277 None:intergenic 65.0%
GCGAACCTGGGAGGAGGAGA+CGG - chr7_3:74110360-74110379 None:intergenic 65.0%
GAGAGAGCGAACCTGGGAGG+AGG - chr7_3:74110366-74110385 None:intergenic 65.0%
GGGCCTTGAAGCCCTTCCAC+GGG + chr7_3:74111885-74111904 Msa1123270:CDS 65.0%
GGCCTTGAAGCCCTTCCACG+GGG + chr7_3:74111886-74111905 Msa1123270:CDS 65.0%
CTCCCCGTGGAAGGGCTTCA+AGG - chr7_3:74111891-74111910 None:intergenic 65.0%
GCTGTGGAGAGAAGCCCTGG+AGG + chr7_3:74111922-74111941 Msa1123270:CDS 65.0%
TCGCAGGGGAAGAGAGGAGG+GGG - chr7_3:74113706-74113725 None:intergenic 65.0%
GCCCTATCGCAGGGGAAGAG+AGG - chr7_3:74113712-74113731 None:intergenic 65.0%
TGTGGAGTGGGGGCCACAGA+AGG + chr7_3:74115072-74115091 Msa1123270:CDS 65.0%
TGGGGACAGCAACAGCCTGG+TGG + chr7_3:74115196-74115215 Msa1123270:CDS 65.0%
GGACAGCAACAGCCTGGTGG+TGG + chr7_3:74115199-74115218 Msa1123270:CDS 65.0%
GGGGGCCACAGAAGGCTCCA+AGG + chr7_3:74115080-74115099 Msa1123270:CDS 70.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 74110201 74115593 74110201 ID=Msa1123270;Name=Msa1123270
chr7_3 mRNA 74110201 74115593 74110201 ID=Msa1123270-mRNA-1;Parent=Msa1123270;Name=Msa1123270-mRNA-1;_AED=0.03;_eAED=0.03;_QI=189|1|1|1|0.8|0.66|6|226|985
chr7_3 exon 74110201 74110373 74110201 ID=Msa1123270-mRNA-1:exon:19645;Parent=Msa1123270-mRNA-1
chr7_3 exon 74110819 74110988 74110819 ID=Msa1123270-mRNA-1:exon:19646;Parent=Msa1123270-mRNA-1
chr7_3 exon 74111493 74111572 74111493 ID=Msa1123270-mRNA-1:exon:19647;Parent=Msa1123270-mRNA-1
chr7_3 exon 74111751 74113595 74111751 ID=Msa1123270-mRNA-1:exon:19648;Parent=Msa1123270-mRNA-1
chr7_3 exon 74114371 74114518 74114371 ID=Msa1123270-mRNA-1:exon:19649;Parent=Msa1123270-mRNA-1
chr7_3 exon 74114637 74115593 74114637 ID=Msa1123270-mRNA-1:exon:19650;Parent=Msa1123270-mRNA-1
chr7_3 five_prime_UTR 74110201 74110373 74110201 ID=Msa1123270-mRNA-1:five_prime_utr;Parent=Msa1123270-mRNA-1
chr7_3 five_prime_UTR 74110819 74110834 74110819 ID=Msa1123270-mRNA-1:five_prime_utr;Parent=Msa1123270-mRNA-1
chr7_3 CDS 74110835 74110988 74110835 ID=Msa1123270-mRNA-1:cds;Parent=Msa1123270-mRNA-1
chr7_3 CDS 74111493 74111572 74111493 ID=Msa1123270-mRNA-1:cds;Parent=Msa1123270-mRNA-1
chr7_3 CDS 74111751 74113595 74111751 ID=Msa1123270-mRNA-1:cds;Parent=Msa1123270-mRNA-1
chr7_3 CDS 74114371 74114518 74114371 ID=Msa1123270-mRNA-1:cds;Parent=Msa1123270-mRNA-1
chr7_3 CDS 74114637 74115367 74114637 ID=Msa1123270-mRNA-1:cds;Parent=Msa1123270-mRNA-1
chr7_3 three_prime_UTR 74115368 74115593 74115368 ID=Msa1123270-mRNA-1:three_prime_utr;Parent=Msa1123270-mRNA-1
Gene Sequence

>Msa1123270

ATGAGCGGTGTCAAGAATAATACAAGGGTTCACGCTGATGACAAACCTTTTCCTGGATGTCTGGGAAGAATGGTTAATCTCTTTGATTTGACTCCTTCTACTGTTGTAAATGCAAACAAGCTTCTCACCGATAAACCGCACCGCGATCATCATGCAGCATCACTTTCAAGAAGTCAATCAGATGTTTCGAGGACTGCAAGTCCTTCATTTGGTGATCGGATAGAAGATAAGCCGATTGTTTCTGACTTAATGAGAGCATCTTCAAATAAGAAAGTAAACGGAACACCCATCAAGATGCTTATGGACCAAGAAATGTCCAAAGAAATTGTTTCCAAGCATAGTCCACCAAATGTGGTTGCAAAATTAATGGGCCTTGAAGCCCTTCCACGGGGAGAACATAGTTTAGCTGTGGAGAGAAGCCCTGGAGGAGATTGTTCTCAGCATATGTGTAGTCATTCTGCGACATCATTCAATCATTGGCAGCTGGAAGATAGGTTTATGGACAAGGAAATGCTTCATGAAGTTCATCCGAGCAGAGAACAGGTTGCTTACAAAGATATTTATGAATTATGGCTGCAATCACAAAGAACAAGCAATGTAAGAGACAAGACACCGGAGAGACGGAAGTGGGTTGAAGATGTTAATGAGAAGAAGATGGCTCTTATACGCCAAAAATTCATGGAAGCAAAGCGTCTGTCTACAGATGAGAGGTTACGTCAATCAAAGGAGTTTGATGAAACCTTAGAAGTTTTAAGCTCCAACAACGATCTGTTAATAAAGTTACTGGATTCTCAAAATCTATATGAACGACAGTCTACTCCACTGGCTGAGACAAAGCGTATTACCGTTCTTAAACCTTCAAAGATGGTTGACAATGAAAAATTCTGTAGAAAGGGAAACAATAATGACAAGCATTTTAAGAAACCATTAAATAATGATGTTGCGTGGGAGAAAAATAGTCCTGGATACTCTCCAGCCAGCCAGAAAGTTGATGAGTTTGCTGTTCAACCTACTCGAATAGTGGTATTGAAGCCAAGTTCTGTGAGGGCGCATGATATTAAGGACGTGGTTTCTCCAACAGTATCATCGCCTCAAAATCTGCAAAGTGGAAACTTCTATCATGACCCTGAGGATGATGATCTACTGGAATCGAGAAAAGTGGCAGAAGAAATTACACAGCAGATGCATGAAGACGCGAGGAGCTACCAAAGAGATGAAACCGTGTATTCTTCAGTATTTTCCACGGGCTATATTGGCGATGACAGTTCATTCTACAAATCAGATCATGAGTGTACTGCTGGGAATTTTAGTGATTTGGAAGTTATGTCACCATCTCCAAGACATTCTTGGGATTTCGTCAATCGCTGTGGAAGTCCTTATTCGTCTTCATCCTTCAGTCGCGCTTCCTGTTCTCCTGAGTCGTCAGTATGCAGAGAGGCCAAGAAACGACTTTCTGAAAGATGGGCCATGATGGCATCTAAGAAGGGTTTTCAAGAACAAAGACATATGCGGAGAAGCTCTACCTTGGGCGAAATGCTTGCTCTTTCCGATGTGAAGAAATCTCTAATATCTGAGTTTGAAGGTATTAATAAAGAACAAGAACCAAATGAATCTGTTTCTTGCAGTAAAAATTTCAATGAAGAAATACGCGCAGATGGTTCTCCTAAAAACCTTCCCAGGTCAAAATCTGTCCCTCTTTCTTCCACTGTCTATGAACATGGGCTCTACGTTGAAGCTTGTAATAATGATGCGGGTAAAGCACACGACTCCAAGGAGCTGACAAAGTCAAAGAGTATGAAATCATCATTTAAAGGGAAAGTTGCAAGTTTCTTATTCTCAAGGAATAAGAAATCAATCAGGGAAAAATCTTGTCTATCTATTTCTACAGACGAGTCCCAATCAACTGTTGCAGAAACATCAGTATCTCCAATAAACTCACCTGAAGTCCTTAGGAATGACATGTCTCAAAGCTTCAACGGTGGCTTCTCTGGAGAGTGTTCTCTTCCAACTCTTTGTGAATCATCGGGCAAAACTTTATCCAGTTCTGTCTTGAACAAACAAGGCGTAATATCTCTGGAGCCTGAATTGACCATGTCAAAGCCCAGGGTGCCATGGATTTCCAGTGAAAACCAGGATCAGCCGAGTCCAATCTCAGTTTTAGAACCTCCATTTGAAGATGAAAATGCAGCTCATGAGTCCTTGGACTGTATGAAGAGTGGTCAGCTTGGATCACGGGTGTCTCTGAAGTCTAATTTAATTGACAAATCACCACCTATAGGATCAATAGCTCGAACCCTCTCATGGGATGATTCTTGTGCAGAGGTGGCAAGTCCGTACCAATTAAAGCCTTCATTGGTTTCCTTGGACACGAAGGTAGAGGATCAAGACTTGCTTGTCTTCGTTCAGAAATTACTATCAGCTGCTGGACTTGATGATCAAGTGCAGCCTGACTCGTTTTATTCTAGATGGCATTCTCTTGAAAGTCCATTGGATCCAACATTGAGGGACAAATACGCCAATCTCAATGACAATGAACCTCAACCTGTACACGAAGCAAAGCGAAGACAGATGAGGTCTAATCAGAAGCTTATATTTGATTGTGTCAATGTTGCACTAATGGAAATTACTGGTTACGGATTAGAAAGTTCCTTAATGGGCAGGTTGTGGAGTGGGGGCCACAGAAGGCTCCAAGGATCAGAGGGTGCACCTTCCCTATTGGTGGATTTGATTGTATCCCATATGAAGGAGTTGACATCTAGTGGCATGAGGTCTGTTTGGGGGGATTGTGGGGACAGCAACAGCCTGGTGGTGGAGACTGTTGTCAGAAAAGAGGTCGTGGGTAAAGGGTGGGTTGAGCTTATGGGATTTGAAATGGATATTTGGGTGAAGGAAGTAGAGGGGAAATTGCTAGAAGAACTTGTGGAGGATGCAGTGGTTGATTTGACAGGCAGGGTCTGA
Protein sequence

>Msa1123270

MSGVKNNTRVHADDKPFPGCLGRMVNLFDLTPSTVVNANKLLTDKPHRDHHAASLSRSQSDVSRTASPSFGDRIEDKPIVSDLMRASSNKKVNGTPIKMLMDQEMSKEIVSKHSPPNVVAKLMGLEALPRGEHSLAVERSPGGDCSQHMCSHSATSFNHWQLEDRFMDKEMLHEVHPSREQVAYKDIYELWLQSQRTSNVRDKTPERRKWVEDVNEKKMALIRQKFMEAKRLSTDERLRQSKEFDETLEVLSSNNDLLIKLLDSQNLYERQSTPLAETKRITVLKPSKMVDNEKFCRKGNNNDKHFKKPLNNDVAWEKNSPGYSPASQKVDEFAVQPTRIVVLKPSSVRAHDIKDVVSPTVSSPQNLQSGNFYHDPEDDDLLESRKVAEEITQQMHEDARSYQRDETVYSSVFSTGYIGDDSSFYKSDHECTAGNFSDLEVMSPSPRHSWDFVNRCGSPYSSSSFSRASCSPESSVCREAKKRLSERWAMMASKKGFQEQRHMRRSSTLGEMLALSDVKKSLISEFEGINKEQEPNESVSCSKNFNEEIRADGSPKNLPRSKSVPLSSTVYEHGLYVEACNNDAGKAHDSKELTKSKSMKSSFKGKVASFLFSRNKKSIREKSCLSISTDESQSTVAETSVSPINSPEVLRNDMSQSFNGGFSGECSLPTLCESSGKTLSSSVLNKQGVISLEPELTMSKPRVPWISSENQDQPSPISVLEPPFEDENAAHESLDCMKSGQLGSRVSLKSNLIDKSPPIGSIARTLSWDDSCAEVASPYQLKPSLVSLDTKVEDQDLLVFVQKLLSAAGLDDQVQPDSFYSRWHSLESPLDPTLRDKYANLNDNEPQPVHEAKRRQMRSNQKLIFDCVNVALMEITGYGLESSLMGRLWSGGHRRLQGSEGAPSLLVDLIVSHMKELTSSGMRSVWGDCGDSNSLVVETVVRKEVVGKGWVELMGFEMDIWVKEVEGKLLEELVEDAVVDLTGRV*