AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1128020

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1128020 MtrunA17_Chr7g0271281 100.000 54 0 0 1 54 1 54 6.61e-33 106
Msa1128020 MtrunA17_Chr7g0271271 87.037 54 7 0 1 54 1 54 1.67e-29 98.2
Msa1128020 MtrunA17_Chr7g0271261 81.481 54 10 0 1 54 1 54 1.79e-26 90.5
Msa1128020 MtrunA17_Chr6g0462381 61.538 52 20 0 1 52 1 52 1.32e-19 73.2
Msa1128020 MtrunA17_Chr4g0073821 62.500 48 17 1 6 52 8 55 1.61e-14 60.8
Msa1128020 MtrunA17_Chr4g0073811 56.522 46 19 1 8 52 10 55 5.86e-12 54.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1128020 AT3G05890.1 81.481 54 10 0 1 54 1 54 1.91e-26 90.9
Msa1128020 AT3G05880.1 75.926 54 13 0 1 54 1 54 3.72e-25 87.4
Msa1128020 AT2G38905.1 62.264 53 20 0 1 53 1 53 2.85e-20 75.1
Msa1128020 AT1G57550.1 50.980 51 25 0 4 54 2 52 1.53e-15 63.2
Msa1128020 AT4G28088.1 57.692 52 21 1 2 52 4 55 1.02e-14 61.6
Msa1128020 AT2G24040.1 64.583 48 16 1 6 52 8 55 1.40e-14 61.2
Msa1128020 AT4G30650.1 65.217 46 15 1 8 52 10 55 4.79e-14 60.1
Msa1128020 AT4G30660.1 67.391 46 14 1 8 52 10 55 3.05e-13 58.2
Msa1128020 AT4G30660.2 67.391 46 14 1 8 52 10 55 3.05e-13 58.2

Find 29 sgRNAs with CRISPR-Local

Find 194 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTCCCCAAAAGATCGAAAA+TGG 0.199118 7_3:+79822833 Msa1128020:exon
TGCCATCATCCTCCCTCCTC+TGG 0.264513 7_3:+79822884 Msa1128020:CDS
TTCCAGGGAGATAGCCAAAA+AGG 0.293556 7_3:-79823066 None:intergenic
CTGGGTGTCTTCCTCAAGTT+TGG 0.312222 7_3:+79822903 Msa1128020:CDS
TATCGCTTTACATTGTCTTT+AGG 0.332953 7_3:+79822751 Msa1128020:five_prime_UTR
GTATTATATAGGTGGAGTTC+TGG 0.387189 7_3:+79823026 Msa1128020:intron
TAGATAGCATAGAGAATTCC+AGG 0.393214 7_3:-79823082 None:intergenic
CAGAACAGTGTTGTTGGGTT+GGG 0.420904 7_3:-79822784 None:intergenic
GGTGGAGTTCTGGCTCTGTT+TGG 0.420945 7_3:+79823036 Msa1128020:intron
GTGGATCATACATAGTTGTC+AGG 0.428834 7_3:+79824469 Msa1128020:three_prime_UTR
AGTTTACAGAACAGTGTTGT+TGG 0.434777 7_3:-79822790 None:intergenic
GCCATCATCCTCCCTCCTCT+GGG 0.447378 7_3:+79822885 Msa1128020:CDS
GTTTACAGAACAGTGTTGTT+GGG 0.458802 7_3:-79822789 None:intergenic
CAAATGCTAAATTGATCACT+TGG 0.460414 7_3:-79823113 None:intergenic
CCTCATGCATGTTACATACA+TGG 0.472384 7_3:+79824494 Msa1128020:three_prime_UTR
ACAGAACAGTGTTGTTGGGT+TGG 0.487242 7_3:-79822785 None:intergenic
CTCCCCAAAAGATCGAAAAT+GGG 0.498888 7_3:+79822834 Msa1128020:exon
CATGAACAAGATTATTGAGA+AGG 0.531399 7_3:-79824688 None:intergenic
ACCCAGAGGAGGGAGGATGA+TGG 0.561117 7_3:-79822886 None:intergenic
TGGATCATACATAGTTGTCA+GGG 0.613653 7_3:+79824470 Msa1128020:three_prime_UTR
TGAGGAAGACACCCAGAGGA+GGG 0.623808 7_3:-79822896 None:intergenic
TTACATGGCAGCCAAACTTG+AGG 0.631155 7_3:-79822914 None:intergenic
AAGCTTATGAACTCTAGCAA+TGG 0.636321 7_3:+79824637 Msa1128020:three_prime_UTR
TTGAGGAAGACACCCAGAGG+AGG 0.651577 7_3:-79822897 None:intergenic
CCATGTATGTAACATGCATG+AGG 0.669167 7_3:-79824494 None:intergenic
AGATAGCATAGAGAATTCCA+GGG 0.676358 7_3:-79823081 None:intergenic
GGAAGACACCCAGAGGAGGG+AGG 0.680794 7_3:-79822893 None:intergenic
GGATCATACATAGTTGTCAG+GGG 0.694128 7_3:+79824471 Msa1128020:three_prime_UTR
AACTTGAGGAAGACACCCAG+AGG 0.724844 7_3:-79822900 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAATTAATTAATCAATTGTT+TGG + chr7_3:79822996-79823015 Msa1128020:intron 10.0%
!! AATTAATTTATTACATAGAT+AGG - chr7_3:79823796-79823815 None:intergenic 10.0%
!! TAATTAATTAATCAATTGTT+TGG + chr7_3:79822996-79823015 Msa1128020:intron 10.0%
!! AATTAATTTATTACATAGAT+AGG - chr7_3:79823796-79823815 None:intergenic 10.0%
!!! GATGATTTATTTTATTTGAA+TGG - chr7_3:79823212-79823231 None:intergenic 15.0%
!!! AAATGTAAATTTTTATCAGA+GGG - chr7_3:79823839-79823858 None:intergenic 15.0%
!!! AAAATGTAAATTTTTATCAG+AGG - chr7_3:79823840-79823859 None:intergenic 15.0%
!! AAAACACTTTATGTTAAAAA+GGG + chr7_3:79824201-79824220 Msa1128020:intron 15.0%
!!! GATGATTTATTTTATTTGAA+TGG - chr7_3:79823212-79823231 None:intergenic 15.0%
!!! AAATGTAAATTTTTATCAGA+GGG - chr7_3:79823839-79823858 None:intergenic 15.0%
!!! AAAATGTAAATTTTTATCAG+AGG - chr7_3:79823840-79823859 None:intergenic 15.0%
!! AAAACACTTTATGTTAAAAA+GGG + chr7_3:79824201-79824220 Msa1128020:intron 15.0%
!! TTAATTAATCAATTGTTTGG+TGG + chr7_3:79822999-79823018 Msa1128020:intron 20.0%
!! AAATGGAATGAAATAATCAT+TGG + chr7_3:79823448-79823467 Msa1128020:intron 20.0%
!!! GTCTTTTTCTTATAAAGTAA+GGG - chr7_3:79823496-79823515 None:intergenic 20.0%
!!! TGTCTTTTTCTTATAAAGTA+AGG - chr7_3:79823497-79823516 None:intergenic 20.0%
!!! TATTTCTATTGAGTTATTAC+CGG + chr7_3:79824138-79824157 Msa1128020:intron 20.0%
!! CAAAACACTTTATGTTAAAA+AGG + chr7_3:79824200-79824219 Msa1128020:intron 20.0%
!! AAACACTTTATGTTAAAAAG+GGG + chr7_3:79824202-79824221 Msa1128020:intron 20.0%
!! TATTTCTCAGTTTCATTATT+TGG + chr7_3:79824248-79824267 Msa1128020:intron 20.0%
!!! TTAATTTTCCTTCAATAACA+AGG + chr7_3:79824394-79824413 Msa1128020:intron 20.0%
!! AAAAAAAGAAGGAATAACTT+TGG - chr7_3:79824553-79824572 None:intergenic 20.0%
!!! CTTCTTTTTTTATGTCTTTT+CGG + chr7_3:79824562-79824581 Msa1128020:three_prime_UTR 20.0%
!! TCAAAAATAGAGCAAAATAA+AGG - chr7_3:79824598-79824617 None:intergenic 20.0%
!! TTAATTAATCAATTGTTTGG+TGG + chr7_3:79822999-79823018 Msa1128020:intron 20.0%
!! AAATGGAATGAAATAATCAT+TGG + chr7_3:79823448-79823467 Msa1128020:intron 20.0%
!!! GTCTTTTTCTTATAAAGTAA+GGG - chr7_3:79823496-79823515 None:intergenic 20.0%
!!! TGTCTTTTTCTTATAAAGTA+AGG - chr7_3:79823497-79823516 None:intergenic 20.0%
!!! TATTTCTATTGAGTTATTAC+CGG + chr7_3:79824138-79824157 Msa1128020:intron 20.0%
!! CAAAACACTTTATGTTAAAA+AGG + chr7_3:79824200-79824219 Msa1128020:intron 20.0%
!! AAACACTTTATGTTAAAAAG+GGG + chr7_3:79824202-79824221 Msa1128020:intron 20.0%
!! TATTTCTCAGTTTCATTATT+TGG + chr7_3:79824248-79824267 Msa1128020:intron 20.0%
!!! TTAATTTTCCTTCAATAACA+AGG + chr7_3:79824394-79824413 Msa1128020:intron 20.0%
!! AAAAAAAGAAGGAATAACTT+TGG - chr7_3:79824553-79824572 None:intergenic 20.0%
!!! CTTCTTTTTTTATGTCTTTT+CGG + chr7_3:79824562-79824581 Msa1128020:three_prime_UTR 20.0%
!! TCAAAAATAGAGCAAAATAA+AGG - chr7_3:79824598-79824617 None:intergenic 20.0%
! AAAAACAAGAAGAAGAAGAA+AGG - chr7_3:79822953-79822972 None:intergenic 25.0%
!! TTGGTGGTAATGTATTATAT+AGG + chr7_3:79823015-79823034 Msa1128020:intron 25.0%
!! TAGATAGAAAAGGGTATAAT+TGG - chr7_3:79823145-79823164 None:intergenic 25.0%
! AGCAAGAAATAGATAGAAAA+GGG - chr7_3:79823154-79823173 None:intergenic 25.0%
! ATGAAATAAGTCAATTAACG+AGG - chr7_3:79823234-79823253 None:intergenic 25.0%
! CATACAATTCATCATATACT+TGG - chr7_3:79823261-79823280 None:intergenic 25.0%
! CAAGTATATGATGAATTGTA+TGG + chr7_3:79823259-79823278 Msa1128020:intron 25.0%
!! TTTGACTTTGCATATACATT+TGG - chr7_3:79823328-79823347 None:intergenic 25.0%
!!! AAACGACACTCATTTTAAAA+CGG - chr7_3:79823405-79823424 None:intergenic 25.0%
!!! TTTAAAATGAGTGTCGTTTT+AGG + chr7_3:79823406-79823425 Msa1128020:intron 25.0%
! TTGACACACAAATTAAGAAA+TGG + chr7_3:79823431-79823450 Msa1128020:intron 25.0%
!! AAAAGTTGGAGTATTTATTG+AGG + chr7_3:79823549-79823568 Msa1128020:intron 25.0%
!! AAAGTTGGAGTATTTATTGA+GGG + chr7_3:79823550-79823569 Msa1128020:intron 25.0%
! TAACTCAATAGAAATAACAC+AGG - chr7_3:79824134-79824153 None:intergenic 25.0%
! GATAAGCATCACAATTATTT+AGG - chr7_3:79824359-79824378 None:intergenic 25.0%
!!! AATTAGTTCCTTGTTATTGA+AGG - chr7_3:79824405-79824424 None:intergenic 25.0%
!!! TATTCATTGTTTTTGTTGAC+AGG + chr7_3:79824447-79824466 Msa1128020:intron 25.0%
!!! AACTTTGTTTTGTTTAGTGA+TGG + chr7_3:79824526-79824545 Msa1128020:three_prime_UTR 25.0%
! CGAAAAGACATAAAAAAAGA+AGG - chr7_3:79824564-79824583 None:intergenic 25.0%
! AAAAACAAGAAGAAGAAGAA+AGG - chr7_3:79822953-79822972 None:intergenic 25.0%
!! TTGGTGGTAATGTATTATAT+AGG + chr7_3:79823015-79823034 Msa1128020:intron 25.0%
!! TAGATAGAAAAGGGTATAAT+TGG - chr7_3:79823145-79823164 None:intergenic 25.0%
! AGCAAGAAATAGATAGAAAA+GGG - chr7_3:79823154-79823173 None:intergenic 25.0%
! ATGAAATAAGTCAATTAACG+AGG - chr7_3:79823234-79823253 None:intergenic 25.0%
! CATACAATTCATCATATACT+TGG - chr7_3:79823261-79823280 None:intergenic 25.0%
! CAAGTATATGATGAATTGTA+TGG + chr7_3:79823259-79823278 Msa1128020:intron 25.0%
!! TTTGACTTTGCATATACATT+TGG - chr7_3:79823328-79823347 None:intergenic 25.0%
!!! AAACGACACTCATTTTAAAA+CGG - chr7_3:79823405-79823424 None:intergenic 25.0%
!!! TTTAAAATGAGTGTCGTTTT+AGG + chr7_3:79823406-79823425 Msa1128020:intron 25.0%
! TTGACACACAAATTAAGAAA+TGG + chr7_3:79823431-79823450 Msa1128020:intron 25.0%
!! AAAAGTTGGAGTATTTATTG+AGG + chr7_3:79823549-79823568 Msa1128020:intron 25.0%
!! AAAGTTGGAGTATTTATTGA+GGG + chr7_3:79823550-79823569 Msa1128020:intron 25.0%
! TAACTCAATAGAAATAACAC+AGG - chr7_3:79824134-79824153 None:intergenic 25.0%
! GATAAGCATCACAATTATTT+AGG - chr7_3:79824359-79824378 None:intergenic 25.0%
!!! AATTAGTTCCTTGTTATTGA+AGG - chr7_3:79824405-79824424 None:intergenic 25.0%
!!! TATTCATTGTTTTTGTTGAC+AGG + chr7_3:79824447-79824466 Msa1128020:intron 25.0%
!!! AACTTTGTTTTGTTTAGTGA+TGG + chr7_3:79824526-79824545 Msa1128020:three_prime_UTR 25.0%
! CGAAAAGACATAAAAAAAGA+AGG - chr7_3:79824564-79824583 None:intergenic 25.0%
TATCGCTTTACATTGTCTTT+AGG + chr7_3:79822751-79822770 Msa1128020:five_prime_UTR 30.0%
!!! GGAAGAGAATTTTAGTTACA+TGG - chr7_3:79822932-79822951 None:intergenic 30.0%
! GTGGTAATGTATTATATAGG+TGG + chr7_3:79823018-79823037 Msa1128020:intron 30.0%
CAAATGCTAAATTGATCACT+TGG - chr7_3:79823116-79823135 None:intergenic 30.0%
GAGCAAGAAATAGATAGAAA+AGG - chr7_3:79823155-79823174 None:intergenic 30.0%
GTATATGATGAATTGTATGG+AGG + chr7_3:79823262-79823281 Msa1128020:intron 30.0%
AAATTGTGTGAGAGAAAAGT+TGG + chr7_3:79823535-79823554 Msa1128020:intron 30.0%
GTATTTATTGAGGGTAAAGT+TGG + chr7_3:79823559-79823578 Msa1128020:intron 30.0%
CGTCTAAATTATCTTTACAC+AGG - chr7_3:79823733-79823752 None:intergenic 30.0%
!! TTTAGACGATCGATTTGTAA+AGG + chr7_3:79823745-79823764 Msa1128020:intron 30.0%
CAATAGAAATAACACAGGTT+TGG - chr7_3:79824129-79824148 None:intergenic 30.0%
AAAGGGGAAAATATGTGAAA+AGG + chr7_3:79824218-79824237 Msa1128020:intron 30.0%
AAGGGGAAAATATGTGAAAA+GGG + chr7_3:79824219-79824238 Msa1128020:intron 30.0%
CATGAACAAGATTATTGAGA+AGG - chr7_3:79824691-79824710 None:intergenic 30.0%
TATCGCTTTACATTGTCTTT+AGG + chr7_3:79822751-79822770 Msa1128020:five_prime_UTR 30.0%
!!! GGAAGAGAATTTTAGTTACA+TGG - chr7_3:79822932-79822951 None:intergenic 30.0%
! GTGGTAATGTATTATATAGG+TGG + chr7_3:79823018-79823037 Msa1128020:intron 30.0%
CAAATGCTAAATTGATCACT+TGG - chr7_3:79823116-79823135 None:intergenic 30.0%
GAGCAAGAAATAGATAGAAA+AGG - chr7_3:79823155-79823174 None:intergenic 30.0%
GTATATGATGAATTGTATGG+AGG + chr7_3:79823262-79823281 Msa1128020:intron 30.0%
AAATTGTGTGAGAGAAAAGT+TGG + chr7_3:79823535-79823554 Msa1128020:intron 30.0%
GTATTTATTGAGGGTAAAGT+TGG + chr7_3:79823559-79823578 Msa1128020:intron 30.0%
CGTCTAAATTATCTTTACAC+AGG - chr7_3:79823733-79823752 None:intergenic 30.0%
!! TTTAGACGATCGATTTGTAA+AGG + chr7_3:79823745-79823764 Msa1128020:intron 30.0%
CAATAGAAATAACACAGGTT+TGG - chr7_3:79824129-79824148 None:intergenic 30.0%
AAAGGGGAAAATATGTGAAA+AGG + chr7_3:79824218-79824237 Msa1128020:intron 30.0%
AAGGGGAAAATATGTGAAAA+GGG + chr7_3:79824219-79824238 Msa1128020:intron 30.0%
CATGAACAAGATTATTGAGA+AGG - chr7_3:79824691-79824710 None:intergenic 30.0%
! GTTTACAGAACAGTGTTGTT+GGG - chr7_3:79822792-79822811 None:intergenic 35.0%
AGTTTACAGAACAGTGTTGT+TGG - chr7_3:79822793-79822812 None:intergenic 35.0%
GTATTATATAGGTGGAGTTC+TGG + chr7_3:79823026-79823045 Msa1128020:intron 35.0%
AGATAGCATAGAGAATTCCA+GGG - chr7_3:79823084-79823103 None:intergenic 35.0%
TAGATAGCATAGAGAATTCC+AGG - chr7_3:79823085-79823104 None:intergenic 35.0%
! CTTTGCATATACATTTGGTG+TGG - chr7_3:79823323-79823342 None:intergenic 35.0%
!! AAGCGACACTCATTTTGAAA+CGG + chr7_3:79823650-79823669 Msa1128020:intron 35.0%
TCCTCTTGTATTAAATCGCA+AGG + chr7_3:79823770-79823789 Msa1128020:intron 35.0%
!! AATTTTGAGTGTGTTTGAGC+CGG - chr7_3:79824160-79824179 None:intergenic 35.0%
CAGACAGCATATAATGATCT+GGG - chr7_3:79824333-79824352 None:intergenic 35.0%
ACAGACAGCATATAATGATC+TGG - chr7_3:79824334-79824353 None:intergenic 35.0%
!!! TCATTGTTTTTGTTGACAGG+TGG + chr7_3:79824450-79824469 Msa1128020:intron 35.0%
TGGATCATACATAGTTGTCA+GGG + chr7_3:79824470-79824489 Msa1128020:three_prime_UTR 35.0%
AAGCTTATGAACTCTAGCAA+TGG + chr7_3:79824637-79824656 Msa1128020:three_prime_UTR 35.0%
! GTTTACAGAACAGTGTTGTT+GGG - chr7_3:79822792-79822811 None:intergenic 35.0%
AGTTTACAGAACAGTGTTGT+TGG - chr7_3:79822793-79822812 None:intergenic 35.0%
GTATTATATAGGTGGAGTTC+TGG + chr7_3:79823026-79823045 Msa1128020:intron 35.0%
AGATAGCATAGAGAATTCCA+GGG - chr7_3:79823084-79823103 None:intergenic 35.0%
TAGATAGCATAGAGAATTCC+AGG - chr7_3:79823085-79823104 None:intergenic 35.0%
! CTTTGCATATACATTTGGTG+TGG - chr7_3:79823323-79823342 None:intergenic 35.0%
!! AAGCGACACTCATTTTGAAA+CGG + chr7_3:79823650-79823669 Msa1128020:intron 35.0%
TCCTCTTGTATTAAATCGCA+AGG + chr7_3:79823770-79823789 Msa1128020:intron 35.0%
!! AATTTTGAGTGTGTTTGAGC+CGG - chr7_3:79824160-79824179 None:intergenic 35.0%
CAGACAGCATATAATGATCT+GGG - chr7_3:79824333-79824352 None:intergenic 35.0%
ACAGACAGCATATAATGATC+TGG - chr7_3:79824334-79824353 None:intergenic 35.0%
!!! TCATTGTTTTTGTTGACAGG+TGG + chr7_3:79824450-79824469 Msa1128020:intron 35.0%
TGGATCATACATAGTTGTCA+GGG + chr7_3:79824470-79824489 Msa1128020:three_prime_UTR 35.0%
AAGCTTATGAACTCTAGCAA+TGG + chr7_3:79824637-79824656 Msa1128020:three_prime_UTR 35.0%
TCTCCCCAAAAGATCGAAAA+TGG + chr7_3:79822833-79822852 Msa1128020:exon 40.0%
CTCCCCAAAAGATCGAAAAT+GGG + chr7_3:79822834-79822853 Msa1128020:exon 40.0%
! TGCCCATTTTCGATCTTTTG+GGG - chr7_3:79822839-79822858 None:intergenic 40.0%
! GTGCCCATTTTCGATCTTTT+GGG - chr7_3:79822840-79822859 None:intergenic 40.0%
! AGTGCCCATTTTCGATCTTT+TGG - chr7_3:79822841-79822860 None:intergenic 40.0%
!!! TGTTTGGTGCTAACCCTTTT+TGG + chr7_3:79823052-79823071 Msa1128020:CDS 40.0%
GCCTTGCGATTTAATACAAG+AGG - chr7_3:79823774-79823793 None:intergenic 40.0%
! TTTTCGCTCATACTTACGAC+CGG + chr7_3:79823939-79823958 Msa1128020:intron 40.0%
GTGGATCATACATAGTTGTC+AGG + chr7_3:79824469-79824488 Msa1128020:three_prime_UTR 40.0%
GGATCATACATAGTTGTCAG+GGG + chr7_3:79824471-79824490 Msa1128020:three_prime_UTR 40.0%
CCATGTATGTAACATGCATG+AGG - chr7_3:79824497-79824516 None:intergenic 40.0%
CCTCATGCATGTTACATACA+TGG + chr7_3:79824494-79824513 Msa1128020:three_prime_UTR 40.0%
TCTCCCCAAAAGATCGAAAA+TGG + chr7_3:79822833-79822852 Msa1128020:exon 40.0%
CTCCCCAAAAGATCGAAAAT+GGG + chr7_3:79822834-79822853 Msa1128020:exon 40.0%
! TGCCCATTTTCGATCTTTTG+GGG - chr7_3:79822839-79822858 None:intergenic 40.0%
! GTGCCCATTTTCGATCTTTT+GGG - chr7_3:79822840-79822859 None:intergenic 40.0%
! AGTGCCCATTTTCGATCTTT+TGG - chr7_3:79822841-79822860 None:intergenic 40.0%
!!! TGTTTGGTGCTAACCCTTTT+TGG + chr7_3:79823052-79823071 Msa1128020:CDS 40.0%
GCCTTGCGATTTAATACAAG+AGG - chr7_3:79823774-79823793 None:intergenic 40.0%
! TTTTCGCTCATACTTACGAC+CGG + chr7_3:79823939-79823958 Msa1128020:intron 40.0%
GTGGATCATACATAGTTGTC+AGG + chr7_3:79824469-79824488 Msa1128020:three_prime_UTR 40.0%
GGATCATACATAGTTGTCAG+GGG + chr7_3:79824471-79824490 Msa1128020:three_prime_UTR 40.0%
CCATGTATGTAACATGCATG+AGG - chr7_3:79824497-79824516 None:intergenic 40.0%
CCTCATGCATGTTACATACA+TGG + chr7_3:79824494-79824513 Msa1128020:three_prime_UTR 40.0%
! CAGAACAGTGTTGTTGGGTT+GGG - chr7_3:79822787-79822806 None:intergenic 45.0%
! ACAGAACAGTGTTGTTGGGT+TGG - chr7_3:79822788-79822807 None:intergenic 45.0%
TTACATGGCAGCCAAACTTG+AGG - chr7_3:79822917-79822936 None:intergenic 45.0%
TCCAGGGAGATAGCCAAAAA+GGG - chr7_3:79823068-79823087 None:intergenic 45.0%
TTCCAGGGAGATAGCCAAAA+AGG - chr7_3:79823069-79823088 None:intergenic 45.0%
CGTGAAAAGAAGAAGACGTG+TGG + chr7_3:79824289-79824308 Msa1128020:intron 45.0%
! CAGAACAGTGTTGTTGGGTT+GGG - chr7_3:79822787-79822806 None:intergenic 45.0%
! ACAGAACAGTGTTGTTGGGT+TGG - chr7_3:79822788-79822807 None:intergenic 45.0%
TTACATGGCAGCCAAACTTG+AGG - chr7_3:79822917-79822936 None:intergenic 45.0%
TCCAGGGAGATAGCCAAAAA+GGG - chr7_3:79823068-79823087 None:intergenic 45.0%
TTCCAGGGAGATAGCCAAAA+AGG - chr7_3:79823069-79823088 None:intergenic 45.0%
CGTGAAAAGAAGAAGACGTG+TGG + chr7_3:79824289-79824308 Msa1128020:intron 45.0%
!! TAAATTAATTAATAATCAAT+TGG + chr7_3:79823806-79823825 Msa1128020:intron 5.0%
!! TAAATTAATTAATAATCAAT+TGG + chr7_3:79823806-79823825 Msa1128020:intron 5.0%
AACTTGAGGAAGACACCCAG+AGG - chr7_3:79822903-79822922 None:intergenic 50.0%
CTGGGTGTCTTCCTCAAGTT+TGG + chr7_3:79822903-79822922 Msa1128020:CDS 50.0%
!!! ACCCTTTTTGGCTATCTCCC+TGG + chr7_3:79823064-79823083 Msa1128020:CDS 50.0%
AACTTGAGGAAGACACCCAG+AGG - chr7_3:79822903-79822922 None:intergenic 50.0%
CTGGGTGTCTTCCTCAAGTT+TGG + chr7_3:79822903-79822922 Msa1128020:CDS 50.0%
!!! ACCCTTTTTGGCTATCTCCC+TGG + chr7_3:79823064-79823083 Msa1128020:CDS 50.0%
TGAGGAAGACACCCAGAGGA+GGG - chr7_3:79822899-79822918 None:intergenic 55.0%
TTGAGGAAGACACCCAGAGG+AGG - chr7_3:79822900-79822919 None:intergenic 55.0%
!! GGTGGAGTTCTGGCTCTGTT+TGG + chr7_3:79823036-79823055 Msa1128020:intron 55.0%
TCGCTCATACTTACGACCGG+AGG + chr7_3:79823942-79823961 Msa1128020:intron 55.0%
CGCTCATACTTACGACCGGA+GGG + chr7_3:79823943-79823962 Msa1128020:intron 55.0%
ACGTAGCTCGTTGTACCCTC+CGG - chr7_3:79823961-79823980 None:intergenic 55.0%
TGAGGAAGACACCCAGAGGA+GGG - chr7_3:79822899-79822918 None:intergenic 55.0%
TTGAGGAAGACACCCAGAGG+AGG - chr7_3:79822900-79822919 None:intergenic 55.0%
!! GGTGGAGTTCTGGCTCTGTT+TGG + chr7_3:79823036-79823055 Msa1128020:intron 55.0%
TCGCTCATACTTACGACCGG+AGG + chr7_3:79823942-79823961 Msa1128020:intron 55.0%
CGCTCATACTTACGACCGGA+GGG + chr7_3:79823943-79823962 Msa1128020:intron 55.0%
ACGTAGCTCGTTGTACCCTC+CGG - chr7_3:79823961-79823980 None:intergenic 55.0%
TGCCATCATCCTCCCTCCTC+TGG + chr7_3:79822884-79822903 Msa1128020:CDS 60.0%
GCCATCATCCTCCCTCCTCT+GGG + chr7_3:79822885-79822904 Msa1128020:CDS 60.0%
ACCCAGAGGAGGGAGGATGA+TGG - chr7_3:79822889-79822908 None:intergenic 60.0%
TGCCATCATCCTCCCTCCTC+TGG + chr7_3:79822884-79822903 Msa1128020:CDS 60.0%
GCCATCATCCTCCCTCCTCT+GGG + chr7_3:79822885-79822904 Msa1128020:CDS 60.0%
ACCCAGAGGAGGGAGGATGA+TGG - chr7_3:79822889-79822908 None:intergenic 60.0%
GGAAGACACCCAGAGGAGGG+AGG - chr7_3:79822896-79822915 None:intergenic 65.0%
GGAAGACACCCAGAGGAGGG+AGG - chr7_3:79822896-79822915 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 79822747 79824748 79822747 ID=Msa1128020;Name=Msa1128020
chr7_3 mRNA 79822747 79824748 79822747 ID=Msa1128020-mRNA-1;Parent=Msa1128020;Name=Msa1128020-mRNA-1;_AED=0.00;_eAED=0.00;_QI=105|1|1|1|0.5|0.33|3|294|54
chr7_3 exon 79822747 79822932 79822747 ID=Msa1128020-mRNA-1:exon:22651;Parent=Msa1128020-mRNA-1
chr7_3 exon 79823037 79823134 79823037 ID=Msa1128020-mRNA-1:exon:22652;Parent=Msa1128020-mRNA-1
chr7_3 exon 79824469 79824748 79824469 ID=Msa1128020-mRNA-1:exon:22653;Parent=Msa1128020-mRNA-1
chr7_3 five_prime_UTR 79822747 79822851 79822747 ID=Msa1128020-mRNA-1:five_prime_utr;Parent=Msa1128020-mRNA-1
chr7_3 CDS 79822852 79822932 79822852 ID=Msa1128020-mRNA-1:cds;Parent=Msa1128020-mRNA-1
chr7_3 CDS 79823037 79823120 79823037 ID=Msa1128020-mRNA-1:cds;Parent=Msa1128020-mRNA-1
chr7_3 three_prime_UTR 79823121 79823134 79823121 ID=Msa1128020-mRNA-1:three_prime_utr;Parent=Msa1128020-mRNA-1
chr7_3 three_prime_UTR 79824469 79824748 79824469 ID=Msa1128020-mRNA-1:three_prime_utr;Parent=Msa1128020-mRNA-1
Gene Sequence

>Msa1128020

ATGGGCACTGCTACATGCATCGATATCATTGTTGCCATCATCCTCCCTCCTCTGGGTGTCTTCCTCAAGTTTGGCTGCCATGTGGAGTTCTGGCTCTGTTTGGTGCTAACCCTTTTTGGCTATCTCCCTGGAATTCTCTATGCTATCTATGCTATTACCAAGTGA
Protein sequence

>Msa1128020

MGTATCIDIIVAIILPPLGVFLKFGCHVEFWLCLVLTLFGYLPGILYAIYAITK*