Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0697020 | XP_003608372.2 | 91.529 | 543 | 27 | 2 | 1 | 530 | 1 | 537 | 0.0 | 989 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0697020 | sp|Q0WM29|MMSA_ARATH | 72.932 | 532 | 122 | 4 | 12 | 529 | 83 | 606 | 0.0 | 788 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0697020 | G7JU35 | 91.529 | 543 | 27 | 2 | 1 | 530 | 1 | 537 | 0.0 | 989 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0697020 | Msa1128020 | 0.821143 | 4.721715e-53 | -8.615850e-47 |
| Msa0697020 | Msa1219790 | 0.835137 | 1.998837e-56 | -8.615850e-47 |
| Msa0697020 | Msa1267080 | 0.826632 | 2.438728e-54 | -8.615850e-47 |
| Msa0697020 | Msa1401550 | 0.825536 | 4.442945e-54 | -8.615850e-47 |
| Msa0268070 | Msa0697020 | 0.831378 | 1.727369e-55 | -8.615850e-47 |
| Msa0559770 | Msa0697020 | 0.840650 | 7.653636e-58 | -8.615850e-47 |
| Msa0562800 | Msa0697020 | 0.856656 | 2.775679e-62 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0697020 | MtrunA17_Chr4g0049641 | 91.529 | 543 | 27 | 2 | 1 | 530 | 1 | 537 | 0.0 | 989 |
| Msa0697020 | MtrunA17_Chr2g0279751 | 78.077 | 520 | 89 | 3 | 24 | 530 | 3 | 510 | 0.0 | 833 |
| Msa0697020 | MtrunA17_Chr2g0310091 | 29.423 | 503 | 340 | 8 | 14 | 507 | 33 | 529 | 4.34e-64 | 218 |
| Msa0697020 | MtrunA17_Chr6g0485301 | 32.488 | 434 | 280 | 8 | 45 | 471 | 25 | 452 | 1.67e-57 | 199 |
| Msa0697020 | MtrunA17_Chr8g0390631 | 33.257 | 436 | 274 | 11 | 45 | 471 | 17 | 444 | 3.32e-57 | 198 |
| Msa0697020 | MtrunA17_Chr3g0117861 | 32.829 | 463 | 284 | 12 | 25 | 471 | 41 | 492 | 1.77e-56 | 197 |
| Msa0697020 | MtrunA17_Chr8g0390651 | 31.920 | 448 | 288 | 10 | 36 | 475 | 19 | 457 | 4.00e-56 | 196 |
| Msa0697020 | MtrunA17_Chr6g0485311 | 32.735 | 446 | 279 | 11 | 36 | 471 | 16 | 450 | 5.93e-56 | 195 |
| Msa0697020 | MtrunA17_Chr8g0365221 | 32.479 | 468 | 280 | 12 | 25 | 471 | 39 | 491 | 8.52e-56 | 196 |
| Msa0697020 | MtrunA17_Chr4g0059221 | 32.321 | 461 | 291 | 10 | 24 | 471 | 42 | 494 | 3.86e-55 | 194 |
| Msa0697020 | MtrunA17_Chr3g0118121 | 27.061 | 473 | 322 | 8 | 59 | 511 | 25 | 494 | 2.57e-50 | 180 |
| Msa0697020 | MtrunA17_Chr3g0118081 | 26.240 | 484 | 312 | 8 | 59 | 511 | 55 | 524 | 4.84e-46 | 169 |
| Msa0697020 | MtrunA17_Chr4g0059521 | 28.326 | 466 | 316 | 7 | 59 | 509 | 25 | 487 | 2.00e-45 | 166 |
| Msa0697020 | MtrunA17_Chr1g0149961 | 27.483 | 433 | 294 | 8 | 48 | 471 | 22 | 443 | 4.14e-44 | 163 |
| Msa0697020 | MtrunA17_Chr4g0074171 | 26.906 | 446 | 299 | 10 | 37 | 471 | 14 | 443 | 1.48e-42 | 158 |
| Msa0697020 | MtrunA17_Chr2g0300801 | 26.730 | 419 | 291 | 6 | 42 | 453 | 22 | 431 | 4.00e-41 | 155 |
| Msa0697020 | MtrunA17_Chr2g0294411 | 24.941 | 425 | 308 | 7 | 54 | 469 | 61 | 483 | 1.59e-26 | 113 |
| Msa0697020 | MtrunA17_Chr8g0384741 | 28.383 | 303 | 202 | 7 | 174 | 472 | 166 | 457 | 2.50e-22 | 100 |
| Msa0697020 | MtrunA17_Chr8g0372381 | 25.666 | 413 | 279 | 11 | 80 | 475 | 8 | 409 | 2.76e-21 | 97.1 |
| Msa0697020 | MtrunA17_Chr1g0159811 | 26.923 | 312 | 207 | 8 | 174 | 478 | 113 | 410 | 2.76e-19 | 90.9 |
| Msa0697020 | MtrunA17_Chr3g0124811 | 27.063 | 303 | 206 | 8 | 174 | 472 | 115 | 406 | 1.77e-18 | 88.2 |
| Msa0697020 | MtrunA17_Chr2g0328781 | 26.814 | 317 | 208 | 9 | 174 | 480 | 117 | 419 | 5.78e-17 | 83.6 |
| Msa0697020 | MtrunA17_Chr4g0032441 | 26.452 | 310 | 200 | 10 | 174 | 471 | 102 | 395 | 1.37e-14 | 76.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0697020 | AT2G14170.1 | 72.932 | 532 | 122 | 4 | 12 | 529 | 83 | 606 | 0.0 | 788 |
| Msa0697020 | AT2G14170.2 | 75.299 | 502 | 103 | 3 | 41 | 529 | 4 | 497 | 0.0 | 777 |
| Msa0697020 | AT2G14170.3 | 73.506 | 502 | 131 | 2 | 12 | 512 | 83 | 583 | 0.0 | 754 |
| Msa0697020 | AT1G79440.1 | 31.579 | 475 | 311 | 7 | 41 | 507 | 52 | 520 | 1.69e-57 | 200 |
| Msa0697020 | AT3G24503.1 | 30.769 | 416 | 276 | 7 | 45 | 453 | 23 | 433 | 1.76e-54 | 191 |
| Msa0697020 | AT1G23800.1 | 30.021 | 483 | 315 | 12 | 45 | 513 | 57 | 530 | 3.60e-53 | 189 |
| Msa0697020 | AT3G48170.1 | 28.333 | 480 | 326 | 7 | 45 | 509 | 11 | 487 | 1.00e-52 | 187 |
| Msa0697020 | AT3G48000.1 | 32.035 | 462 | 291 | 12 | 22 | 471 | 38 | 488 | 9.82e-52 | 185 |
| Msa0697020 | AT1G74920.1 | 27.500 | 480 | 328 | 9 | 45 | 508 | 11 | 486 | 2.22e-49 | 177 |
| Msa0697020 | AT1G74920.2 | 27.292 | 480 | 324 | 10 | 45 | 508 | 11 | 481 | 2.26e-46 | 169 |
| Msa0697020 | AT2G24270.3 | 25.977 | 435 | 298 | 9 | 48 | 471 | 22 | 443 | 6.24e-42 | 157 |
| Msa0697020 | AT2G24270.1 | 25.977 | 435 | 298 | 9 | 48 | 471 | 22 | 443 | 6.24e-42 | 157 |
| Msa0697020 | AT2G24270.4 | 25.977 | 435 | 298 | 9 | 48 | 471 | 22 | 443 | 6.37e-42 | 157 |
| Msa0697020 | AT2G24270.2 | 25.840 | 476 | 323 | 11 | 7 | 471 | 27 | 483 | 6.71e-42 | 158 |
| Msa0697020 | AT1G54100.2 | 26.485 | 404 | 281 | 6 | 58 | 453 | 35 | 430 | 8.33e-41 | 154 |
| Msa0697020 | AT1G54100.1 | 26.485 | 404 | 281 | 6 | 58 | 453 | 35 | 430 | 8.33e-41 | 154 |
| Msa0697020 | AT1G23800.2 | 34.076 | 314 | 194 | 9 | 45 | 350 | 57 | 365 | 9.55e-36 | 138 |
| Msa0697020 | AT3G66658.1 | 23.529 | 425 | 314 | 6 | 54 | 469 | 61 | 483 | 8.91e-28 | 117 |
| Msa0697020 | AT3G66658.2 | 23.529 | 425 | 314 | 6 | 54 | 469 | 61 | 483 | 1.27e-27 | 117 |
| Msa0697020 | AT1G44170.3 | 26.557 | 305 | 207 | 9 | 174 | 473 | 46 | 338 | 1.32e-20 | 94.7 |
| Msa0697020 | AT1G44170.1 | 26.426 | 333 | 225 | 11 | 174 | 501 | 109 | 426 | 1.94e-20 | 94.7 |
| Msa0697020 | AT1G44170.2 | 26.426 | 333 | 225 | 11 | 174 | 501 | 109 | 426 | 1.94e-20 | 94.7 |
| Msa0697020 | AT4G36250.1 | 26.464 | 427 | 283 | 13 | 89 | 501 | 16 | 425 | 1.80e-19 | 91.7 |
| Msa0697020 | AT4G34240.3 | 27.628 | 333 | 221 | 11 | 174 | 501 | 30 | 347 | 1.59e-17 | 85.1 |
| Msa0697020 | AT4G34240.1 | 25.000 | 436 | 288 | 16 | 79 | 501 | 80 | 489 | 2.58e-17 | 85.5 |
| Msa0697020 | AT4G34240.4 | 25.000 | 436 | 288 | 16 | 79 | 501 | 65 | 474 | 3.26e-17 | 85.1 |
Find 154 sgRNAs with CRISPR-Local
Find 376 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTGTATGGATATATTATTTA+TGG | 0.111055 | 4_4:-67017008 | None:intergenic |
| AAATTATACACATGACTTTC+TGG | 0.135571 | 4_4:-67016841 | None:intergenic |
| CCAAAATGAGGGTTTATATT+AGG | 0.199012 | 4_4:+67016977 | Msa0697020:three_prime_UTR |
| AAAAGGGTTCCCAATCTTAT+TGG | 0.207386 | 4_4:+67012458 | Msa0697020:CDS |
| ATTTGGTGTGCAGTCTAATA+TGG | 0.210485 | 4_4:+67014277 | Msa0697020:intron |
| GCTTTAGTTGCTGCTGGTTT+TGG | 0.210605 | 4_4:+67014356 | Msa0697020:CDS |
| CTTCCACTGATCGCTATAAA+AGG | 0.210956 | 4_4:+67012441 | Msa0697020:CDS |
| CTTTGTACTCTTCAATAAAA+TGG | 0.218726 | 4_4:+67016879 | Msa0697020:three_prime_UTR |
| CTCTATAATGCTTGCAGAAT+TGG | 0.220408 | 4_4:+67013544 | Msa0697020:CDS |
| CCTAATATAAACCCTCATTT+TGG | 0.222450 | 4_4:-67016977 | None:intergenic |
| GCTTCTATATTTACTACTTC+TGG | 0.230981 | 4_4:+67016032 | Msa0697020:CDS |
| TATGGTGTTTGAAGAAATTA+AGG | 0.245918 | 4_4:-67012177 | None:intergenic |
| GTTTCAGTTTATTATATATA+AGG | 0.269729 | 4_4:-67012082 | None:intergenic |
| AAAGGGTTCCCAATCTTATT+GGG | 0.284247 | 4_4:+67012459 | Msa0697020:CDS |
| GGAGATGTGTTTCGTGGTTT+AGG | 0.290732 | 4_4:+67012971 | Msa0697020:CDS |
| AATGATAATGATACTCATTA+TGG | 0.298976 | 4_4:+67016278 | Msa0697020:CDS |
| CAAACCTGTTTGCTGATAAC+TGG | 0.309419 | 4_4:-67014897 | None:intergenic |
| AATATAATATAGAAGGAATT+GGG | 0.311103 | 4_4:-67016952 | None:intergenic |
| TTTGGAAAATATAATATAGA+AGG | 0.336334 | 4_4:-67016959 | None:intergenic |
| AAATATAATATAGAAGGAAT+TGG | 0.336456 | 4_4:-67016953 | None:intergenic |
| GAATTTGATACGAAAGGATT+TGG | 0.341238 | 4_4:+67012020 | Msa0697020:five_prime_UTR |
| GGATATATTATTTATGGATT+CGG | 0.341738 | 4_4:-67017002 | None:intergenic |
| ACACGTTGGCGCGTCGTAAC+TGG | 0.345070 | 4_4:-67012726 | None:intergenic |
| CTTCAGTGTCTTTCCTTGTT+CGG | 0.357016 | 4_4:-67012939 | None:intergenic |
| TAATGGAATAAATTACTAAT+AGG | 0.357562 | 4_4:+67011992 | Msa0697020:five_prime_UTR |
| AGCGTTTACTTTAAGAGCTT+TGG | 0.358538 | 4_4:-67014847 | None:intergenic |
| ATGCCTCAGATCTCTGCTTT+CGG | 0.359917 | 4_4:+67012386 | Msa0697020:CDS |
| ACCTCCATGAAAAGAAGAAC+TGG | 0.370811 | 4_4:-67015758 | None:intergenic |
| ACAATACATTATTCTATTTG+TGG | 0.382209 | 4_4:-67016253 | None:intergenic |
| ACTAGGAAAGGAAAAGAATA+TGG | 0.382821 | 4_4:-67012195 | None:intergenic |
| GTGCACAGATTAGTTCAATC+TGG | 0.390956 | 4_4:+67015042 | Msa0697020:CDS |
| ATTGGAGCCAACAAATGATA+TGG | 0.397690 | 4_4:-67013889 | None:intergenic |
| TGTTGAATTGTAGGCAAAGC+AGG | 0.414067 | 4_4:+67016712 | Msa0697020:intron |
| ATTAAAGCCATATCATTTGT+TGG | 0.414988 | 4_4:+67013882 | Msa0697020:CDS |
| GTGGAACATGCTTGTGGAAT+GGG | 0.416900 | 4_4:+67013106 | Msa0697020:CDS |
| ATCCACAATGGAATCATTGC+AGG | 0.418409 | 4_4:-67013235 | None:intergenic |
| TCTTCCATCAAGCAGTAGTC+TGG | 0.420204 | 4_4:-67015079 | None:intergenic |
| AGCTAAAGGGAAGCGTGTTC+AGG | 0.424616 | 4_4:+67014178 | Msa0697020:CDS |
| GCAGAATTGGCACTGGAAGC+TGG | 0.430921 | 4_4:+67013557 | Msa0697020:CDS |
| TGGTCCAGTTATCAGCAAAC+AGG | 0.440028 | 4_4:+67014893 | Msa0697020:CDS |
| GTAAATGCTTTAGTTGCTGC+TGG | 0.441142 | 4_4:+67014350 | Msa0697020:CDS |
| TCACCTGGGTCTTTCTCTGA+TGG | 0.443595 | 4_4:-67013301 | None:intergenic |
| AAATTGCCAGATTCATATCC+TGG | 0.446066 | 4_4:-67015555 | None:intergenic |
| TAGGTCCCAGGATATGAATC+TGG | 0.446613 | 4_4:+67015549 | Msa0697020:intron |
| GACTGAGATTGAGGCTGGGC+AGG | 0.446706 | 4_4:+67016076 | Msa0697020:CDS |
| CTGACTCAGCTTCTCGTGTC+TGG | 0.448314 | 4_4:+67012138 | Msa0697020:five_prime_UTR |
| AAATTAAGGATGATACAGTT+TGG | 0.448322 | 4_4:-67012163 | None:intergenic |
| CTCATTATGGATCCTGGACC+AGG | 0.451404 | 4_4:+67016291 | Msa0697020:CDS |
| TTTACATCATTTAGAGGTGG+TGG | 0.451994 | 4_4:+67013087 | Msa0697020:intron |
| GGTGTCTTAAATGTTGTTCA+TGG | 0.452942 | 4_4:+67013590 | Msa0697020:CDS |
| GGTGCCAGACTACTGCTTGA+TGG | 0.455239 | 4_4:+67015075 | Msa0697020:CDS |
| TTTCAGACTGAGATTGAGGC+TGG | 0.456700 | 4_4:+67016071 | Msa0697020:CDS |
| GTTGAGCCGCTGTTGAGAAA+TGG | 0.457193 | 4_4:-67012415 | None:intergenic |
| AGCTGCTGGGCAAAGGTGCA+TGG | 0.458588 | 4_4:+67014379 | Msa0697020:CDS |
| ACGGAACCTGATGCAGATCT+TGG | 0.459081 | 4_4:+67014873 | Msa0697020:CDS |
| TTTGGTGTGCAGTCTAATAT+GGG | 0.459672 | 4_4:+67014278 | Msa0697020:intron |
| GGAGCTTATACGCAGAGATA+TGG | 0.460147 | 4_4:+67012764 | Msa0697020:CDS |
| TGCTGTATCTGCAGCTAAGA+AGG | 0.460432 | 4_4:+67012680 | Msa0697020:CDS |
| TATTCAAGAGCAGCAGCTAA+AGG | 0.462757 | 4_4:+67014164 | Msa0697020:CDS |
| ATGATACTCATTATGGATCC+TGG | 0.469157 | 4_4:+67016285 | Msa0697020:CDS |
| ATCCCAGCACAAACACCAAT+TGG | 0.470380 | 4_4:-67013196 | None:intergenic |
| ATTCAAGAGCAGCAGCTAAA+GGG | 0.475145 | 4_4:+67014165 | Msa0697020:CDS |
| AACTCATCATCCGTAGTCAA+TGG | 0.477816 | 4_4:-67012651 | None:intergenic |
| ATTTCCAACAGGTATGGAAA+TGG | 0.478187 | 4_4:+67016008 | Msa0697020:intron |
| CTACTTCTGGTGTTGCTGCT+AGG | 0.478222 | 4_4:+67016045 | Msa0697020:CDS |
| GAACCAATTGGTGTTTGTGC+TGG | 0.479759 | 4_4:+67013193 | Msa0697020:CDS |
| TGGAATGGGAACTCTACAAA+TGG | 0.483756 | 4_4:+67013120 | Msa0697020:CDS |
| AAAGCTGCGACATCCTGGTT+TGG | 0.485384 | 4_4:-67012234 | None:intergenic |
| GCTGTGTTGTTTGTGCTACT+AGG | 0.486455 | 4_4:-67012212 | None:intergenic |
| CTGGAAGCTGGTTTGCCTGA+GGG | 0.487867 | 4_4:+67013569 | Msa0697020:CDS |
| CACTTACAGGGTTTAAAACA+TGG | 0.492044 | 4_4:-67012517 | None:intergenic |
| TGCACAGATTAGTTCAATCT+GGG | 0.495573 | 4_4:+67015043 | Msa0697020:CDS |
| GAAATTTCAGACTGAGATTG+AGG | 0.497380 | 4_4:+67016067 | Msa0697020:CDS |
| GGAATGGGAACTCTACAAAT+GGG | 0.498031 | 4_4:+67013121 | Msa0697020:CDS |
| TATCTCTGCGTATAAGCTCC+TGG | 0.499342 | 4_4:-67012761 | None:intergenic |
| TTATCTTCAGGCTGATAGCT+TGG | 0.499596 | 4_4:+67015883 | Msa0697020:intron |
| AATATCGTCATCATCACAAA+TGG | 0.501231 | 4_4:-67013862 | None:intergenic |
| CGTTGATGCCAACCTGGTCC+AGG | 0.502703 | 4_4:-67016303 | None:intergenic |
| TTATAGCGATCAGTGGAAGA+TGG | 0.504808 | 4_4:-67012437 | None:intergenic |
| ACGTGTTATGTTGAAGCTCC+AGG | 0.512753 | 4_4:+67012743 | Msa0697020:CDS |
| AGTGATATTTGATAAGATAG+TGG | 0.516177 | 4_4:-67015586 | None:intergenic |
| AATAGAAAGCTGCGACATCC+TGG | 0.517117 | 4_4:-67012239 | None:intergenic |
| TATAAGACAACTTACAACAT+TGG | 0.520923 | 4_4:-67013907 | None:intergenic |
| ATAAGGACGAATCAATTGAC+AGG | 0.521127 | 4_4:-67012065 | None:intergenic |
| TTCCACTGATCGCTATAAAA+GGG | 0.522326 | 4_4:+67012442 | Msa0697020:CDS |
| TTGAGCCGCTGTTGAGAAAT+GGG | 0.523015 | 4_4:-67012414 | None:intergenic |
| GTGATATTTGATAAGATAGT+GGG | 0.524228 | 4_4:-67015585 | None:intergenic |
| GTAGTTGAATTTGATACGAA+AGG | 0.524559 | 4_4:+67012014 | Msa0697020:five_prime_UTR |
| GTAGCATCAATATTTGCGTC+TGG | 0.524576 | 4_4:-67014326 | None:intergenic |
| ACTGGAAGCTGGTTTGCCTG+AGG | 0.526090 | 4_4:+67013568 | Msa0697020:CDS |
| AACCAATTGGTGTTTGTGCT+GGG | 0.527195 | 4_4:+67013194 | Msa0697020:CDS |
| TTGTGGGAGGTTCACAAGCA+TGG | 0.531533 | 4_4:+67014420 | Msa0697020:CDS |
| GCTCAAGGAGATGTGTTTCG+TGG | 0.534549 | 4_4:+67012965 | Msa0697020:CDS |
| GCTTGATGGAAGAAATATAG+TGG | 0.542955 | 4_4:+67015089 | Msa0697020:CDS |
| AATGCTTGCAGAATTGGCAC+TGG | 0.543066 | 4_4:+67013550 | Msa0697020:CDS |
| GGTGGAACATGCTTGTGGAA+TGG | 0.548358 | 4_4:+67013105 | Msa0697020:CDS |
| TTCGCAAGTTCCATTGACTA+CGG | 0.550198 | 4_4:+67012641 | Msa0697020:CDS |
| CAGTGTCTTTCCTTGTTCGG+TGG | 0.551950 | 4_4:-67012936 | None:intergenic |
| CTAAGAAGGCATTTCCGTCA+TGG | 0.551971 | 4_4:+67012694 | Msa0697020:CDS |
| ACTGGACCAAGATCTGCATC+AGG | 0.552636 | 4_4:-67014879 | None:intergenic |
| AACAATAACTCAGCAGTGGA+AGG | 0.553106 | 4_4:+67016759 | Msa0697020:CDS |
| GTTGAATTGTAGGCAAAGCA+GGG | 0.553526 | 4_4:+67016713 | Msa0697020:intron |
| CTTAATATAACCACCGAACA+AGG | 0.558754 | 4_4:+67012926 | Msa0697020:CDS |
| CAATTCTGCAAGCATTATAG+AGG | 0.558839 | 4_4:-67013543 | None:intergenic |
| AAGGGTTCCCAATCTTATTG+GGG | 0.562322 | 4_4:+67012460 | Msa0697020:CDS |
| ACTCTTCAATAAAATGGCGT+AGG | 0.562730 | 4_4:+67016885 | Msa0697020:three_prime_UTR |
| TACAGTGTCAGAGAACCAAT+TGG | 0.564839 | 4_4:+67013181 | Msa0697020:CDS |
| TTTCCCGTGGCTGTTACTTG+TGG | 0.569235 | 4_4:+67013259 | Msa0697020:CDS |
| ACAACATTTAAGACACCCTC+AGG | 0.576285 | 4_4:-67013584 | None:intergenic |
| ATCATTGCAGGAAAGTTGAA+AGG | 0.582337 | 4_4:-67013223 | None:intergenic |
| ATATAATATAGAAGGAATTG+GGG | 0.583499 | 4_4:-67016951 | None:intergenic |
| GTTGTTTGTGCTACTAGGAA+AGG | 0.591730 | 4_4:-67012207 | None:intergenic |
| TCTTAAAGTAAACGCTGGAA+CGG | 0.592374 | 4_4:+67014854 | Msa0697020:CDS |
| TTCAGACTGAGATTGAGGCT+GGG | 0.595013 | 4_4:+67016072 | Msa0697020:CDS |
| TGCCGACATGGAGTGCTACA+AGG | 0.595715 | 4_4:+67015608 | Msa0697020:CDS |
| ATCAAATATCACTGCCGACA+TGG | 0.599985 | 4_4:+67015596 | Msa0697020:CDS |
| CAGCAGTGGAAGGATTCAGT+TGG | 0.600671 | 4_4:+67016769 | Msa0697020:CDS |
| TTGCCACAAGTAACAGCCAC+GGG | 0.603658 | 4_4:-67013262 | None:intergenic |
| ACTGGAGTGTTACGCCATGA+CGG | 0.604165 | 4_4:-67012708 | None:intergenic |
| GTGCATGACAAATAGGTCCC+AGG | 0.604335 | 4_4:+67015537 | Msa0697020:intron |
| TATGTTTCAAATGTTTCACA+TGG | 0.608715 | 4_4:+67013148 | Msa0697020:CDS |
| ACAAACAACACAGCCAAACC+AGG | 0.610926 | 4_4:+67012221 | Msa0697020:five_prime_UTR |
| CCTCCATGAAAAGAAGAACT+GGG | 0.614002 | 4_4:-67015757 | None:intergenic |
| AATTGCCAGATTCATATCCT+GGG | 0.614209 | 4_4:-67015554 | None:intergenic |
| TTGGTGTGCAGTCTAATATG+GGG | 0.615382 | 4_4:+67014279 | Msa0697020:intron |
| TCAAAACAATAACTCAGCAG+TGG | 0.623442 | 4_4:+67016755 | Msa0697020:CDS |
| AAACCATCAGAGAAAGACCC+AGG | 0.627538 | 4_4:+67013298 | Msa0697020:CDS |
| TTCCTGCAATGATTCCATTG+TGG | 0.632608 | 4_4:+67013233 | Msa0697020:CDS |
| AAGACACTGAAGGATGCTCA+AGG | 0.637657 | 4_4:+67012950 | Msa0697020:CDS |
| GTTCAATCTGGGGTCGACAG+TGG | 0.639096 | 4_4:+67015054 | Msa0697020:CDS |
| AAAGCTCTTAAAGTAAACGC+TGG | 0.643147 | 4_4:+67014849 | Msa0697020:CDS |
| GCCACGGGAAACATCCACAA+TGG | 0.653277 | 4_4:-67013247 | None:intergenic |
| AGGGTTCCCAATCTTATTGG+GGG | 0.654274 | 4_4:+67012461 | Msa0697020:CDS |
| TCCATTGTGGATGTTTCCCG+TGG | 0.654647 | 4_4:+67013246 | Msa0697020:CDS |
| GAATGGGAACTCTACAAATG+GGG | 0.655252 | 4_4:+67013122 | Msa0697020:CDS |
| GTTCCGAAAGCAGAGATCTG+AGG | 0.658576 | 4_4:-67012389 | None:intergenic |
| TAAGGACGAATCAATTGACA+GGG | 0.658695 | 4_4:-67012064 | None:intergenic |
| TGGCAGTAGCAAGATTAACA+TGG | 0.661984 | 4_4:+67016789 | Msa0697020:CDS |
| TTGAATTGTAGGCAAAGCAG+GGG | 0.663336 | 4_4:+67016714 | Msa0697020:intron |
| AGGACGAATCAATTGACAGG+GGG | 0.668442 | 4_4:-67012062 | None:intergenic |
| TACCTTGTAGCACTCCATGT+CGG | 0.672475 | 4_4:-67015610 | None:intergenic |
| CGAACAAGGAAAGACACTGA+AGG | 0.677513 | 4_4:+67012940 | Msa0697020:CDS |
| ATTGCCACAAGTAACAGCCA+CGG | 0.678517 | 4_4:-67013263 | None:intergenic |
| TGATATTTGATAAGATAGTG+GGG | 0.681135 | 4_4:-67015584 | None:intergenic |
| AGCCGCTGTTGAGAAATGGG+AGG | 0.683940 | 4_4:-67012411 | None:intergenic |
| TGGTGTGCAGTCTAATATGG+GGG | 0.686626 | 4_4:+67014280 | Msa0697020:intron |
| AACCTCCCATTTCTCAACAG+CGG | 0.687198 | 4_4:+67012409 | Msa0697020:CDS |
| AATGGGAACTCTACAAATGG+GGG | 0.689460 | 4_4:+67013123 | Msa0697020:CDS |
| GAGGTGGTGGAACATGCTTG+TGG | 0.694713 | 4_4:+67013100 | Msa0697020:intron |
| GCACAGATTAGTTCAATCTG+GGG | 0.697298 | 4_4:+67015044 | Msa0697020:CDS |
| GGAGCTTCAACATAACACGT+TGG | 0.699352 | 4_4:-67012740 | None:intergenic |
| GGACGAATCAATTGACAGGG+GGG | 0.723548 | 4_4:-67012061 | None:intergenic |
| AAGGACGAATCAATTGACAG+GGG | 0.756627 | 4_4:-67012063 | None:intergenic |
| TCGCAGCTTTCTATTCAACG+AGG | 0.767158 | 4_4:+67012247 | Msa0697020:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACTTTATTAAAAAGAAATAA+TGG | + | chr4_4:67011975-67011994 | Msa0697020:five_prime_UTR | 10.0% |
| !!! | AATCTTTTGTTTTTTTTAAA+CGG | - | chr4_4:67014663-67014682 | None:intergenic | 10.0% |
| !! | AAAATAATCTATCATTATAT+GGG | - | chr4_4:67015454-67015473 | None:intergenic | 10.0% |
| !! | ATTTATTTGTTTAAATACAT+TGG | + | chr4_4:67016453-67016472 | Msa0697020:intron | 10.0% |
| !! | TTTATTTGTTTAAATACATT+GGG | + | chr4_4:67016454-67016473 | Msa0697020:intron | 10.0% |
| ! | GGGGGGGGGGGGGGGGGGGG+GGG | + | chr4_4:67016474-67016493 | Msa0697020:intron | 100.0% |
| ! | GGGGGGGGGGGGGGGGGGGG+GGG | + | chr4_4:67016474-67016493 | Msa0697020:intron | 100.0% |
| ! | GGGGGGGGGGGGGGGGGGGG+GGG | + | chr4_4:67016474-67016493 | Msa0697020:intron | 100.0% |
| ! | GGGGGGGGGGGGGGGGGGGG+GGG | + | chr4_4:67016474-67016493 | Msa0697020:intron | 100.0% |
| ! | GGGGGGGGGGGGGGGGGGGG+GGG | + | chr4_4:67016474-67016493 | Msa0697020:intron | 100.0% |
| ! | GGGGGGGGGGGGGGGGGGGG+GGG | + | chr4_4:67016474-67016493 | Msa0697020:intron | 100.0% |
| ! | GGGGGGGGGGGGGGGGGGGG+GGG | + | chr4_4:67016474-67016493 | Msa0697020:intron | 100.0% |
| ! | GGGGGGGGGGGGGGGGGGGG+GGG | + | chr4_4:67016474-67016493 | Msa0697020:intron | 100.0% |
| ! | GGGGGGGGGGGGGGGGGGGG+GGG | + | chr4_4:67016474-67016493 | Msa0697020:intron | 100.0% |
| !! | TAATGGAATAAATTACTAAT+AGG | + | chr4_4:67011992-67012011 | Msa0697020:five_prime_UTR | 15.0% |
| !! | GTTTCAGTTTATTATATATA+AGG | - | chr4_4:67012085-67012104 | None:intergenic | 15.0% |
| !! | AAAACAAAAACTGTAAATTA+AGG | - | chr4_4:67012552-67012571 | None:intergenic | 15.0% |
| !!! | TTTTAATTTACATCATTTAG+AGG | + | chr4_4:67013081-67013100 | Msa0697020:intron | 15.0% |
| !! | ATACTAAAATACAACATAAA+GGG | - | chr4_4:67014100-67014119 | None:intergenic | 15.0% |
| !! | TATACTAAAATACAACATAA+AGG | - | chr4_4:67014101-67014120 | None:intergenic | 15.0% |
| !! | TAATAAATCTAGATCAATTT+CGG | - | chr4_4:67014547-67014566 | None:intergenic | 15.0% |
| !!! | TTTTATCATAATTCCATTAT+TGG | + | chr4_4:67014614-67014633 | Msa0697020:intron | 15.0% |
| !! | TCATTCAAAAATTATATCTA+CGG | + | chr4_4:67014938-67014957 | Msa0697020:intron | 15.0% |
| !! | CAAAATAATCTATCATTATA+TGG | - | chr4_4:67015455-67015474 | None:intergenic | 15.0% |
| !! | TTATTTGTTTAAATACATTG+GGG | + | chr4_4:67016455-67016474 | Msa0697020:intron | 15.0% |
| !!! | TTTTTCTTATTATATGTTGT+AGG | + | chr4_4:67016669-67016688 | Msa0697020:intron | 15.0% |
| !!! | GTGTATAATTTTTTCTATTT+TGG | + | chr4_4:67016853-67016872 | Msa0697020:three_prime_UTR | 15.0% |
| !! | AATATAATATAGAAGGAATT+GGG | - | chr4_4:67016955-67016974 | None:intergenic | 15.0% |
| !! | AAATATAATATAGAAGGAAT+TGG | - | chr4_4:67016956-67016975 | None:intergenic | 15.0% |
| !! | TTTGGAAAATATAATATAGA+AGG | - | chr4_4:67016962-67016981 | None:intergenic | 15.0% |
| !!! | ATATTATATTTTCCAAAATG+AGG | + | chr4_4:67016965-67016984 | Msa0697020:three_prime_UTR | 15.0% |
| !!! | TATTATATTTTCCAAAATGA+GGG | + | chr4_4:67016966-67016985 | Msa0697020:three_prime_UTR | 15.0% |
| !!! | TCTATTTCAACTTTGTTTTT+AGG | + | chr4_4:67012892-67012911 | Msa0697020:intron | 20.0% |
| !!! | ATAGTTATGCTCATAATTTT+GGG | + | chr4_4:67013039-67013058 | Msa0697020:intron | 20.0% |
| !!! | TGTAACATTATAATGGAAAA+AGG | + | chr4_4:67013375-67013394 | Msa0697020:intron | 20.0% |
| !!! | GTAACATTATAATGGAAAAA+GGG | + | chr4_4:67013376-67013395 | Msa0697020:intron | 20.0% |
| !! | ATAGAAAGATATATAGAAGA+GGG | + | chr4_4:67014035-67014054 | Msa0697020:intron | 20.0% |
| !! | TACTAAAATACAACATAAAG+GGG | - | chr4_4:67014099-67014118 | None:intergenic | 20.0% |
| !!! | ATTTTCTGCATAATCATATA+GGG | + | chr4_4:67014585-67014604 | Msa0697020:intron | 20.0% |
| !!! | TTTACTGATTATACCAATAA+TGG | - | chr4_4:67014630-67014649 | None:intergenic | 20.0% |
| !!! | TTTTGTTTTTTTTAAACGGA+AGG | - | chr4_4:67014659-67014678 | None:intergenic | 20.0% |
| !!! | TAATCAAAATCAATTTTCCA+AGG | - | chr4_4:67014764-67014783 | None:intergenic | 20.0% |
| !! | ATGTTTCTTAAAATTCTTAC+CGG | + | chr4_4:67014999-67015018 | Msa0697020:intron | 20.0% |
| !!! | TTTATTTTATCTTATCCTGT+CGG | - | chr4_4:67015345-67015364 | None:intergenic | 20.0% |
| !! | TGAAAACAAATAAGATTCTA+AGG | - | chr4_4:67015801-67015820 | None:intergenic | 20.0% |
| !! | ACAAGTATTTATCAAACATA+CGG | + | chr4_4:67015933-67015952 | Msa0697020:intron | 20.0% |
| !! | ATATATAGCTGTTTAACATA+AGG | - | chr4_4:67015971-67015990 | None:intergenic | 20.0% |
| !! | ACAATACATTATTCTATTTG+TGG | - | chr4_4:67016256-67016275 | None:intergenic | 20.0% |
| !!! | AATGATAATGATACTCATTA+TGG | + | chr4_4:67016278-67016297 | Msa0697020:CDS | 20.0% |
| !! | TATTTGTTTAAATACATTGG+GGG | + | chr4_4:67016456-67016475 | Msa0697020:intron | 20.0% |
| !! | ATATAATATAGAAGGAATTG+GGG | - | chr4_4:67016954-67016973 | None:intergenic | 20.0% |
| !! | GGATATATTATTTATGGATT+CGG | - | chr4_4:67017005-67017024 | None:intergenic | 20.0% |
| ! | AAATTAAGGATGATACAGTT+TGG | - | chr4_4:67012166-67012185 | None:intergenic | 25.0% |
| ! | TATGGTGTTTGAAGAAATTA+AGG | - | chr4_4:67012180-67012199 | None:intergenic | 25.0% |
| ! | AGGAAAAAAAAACACTTACA+GGG | - | chr4_4:67012532-67012551 | None:intergenic | 25.0% |
| ! | AAGGAAAAAAAAACACTTAC+AGG | - | chr4_4:67012533-67012552 | None:intergenic | 25.0% |
| ! | CTATCTAATATTTGTCTGAT+TGG | + | chr4_4:67012591-67012610 | Msa0697020:intron | 25.0% |
| !! | CATAGTTATGCTCATAATTT+TGG | + | chr4_4:67013038-67013057 | Msa0697020:intron | 25.0% |
| ! | TAATTTACATCATTTAGAGG+TGG | + | chr4_4:67013084-67013103 | Msa0697020:intron | 25.0% |
| ! | TATGTTTCAAATGTTTCACA+TGG | + | chr4_4:67013148-67013167 | Msa0697020:CDS | 25.0% |
| ! | CAGATTGAGAAAATAATACA+AGG | - | chr4_4:67013347-67013366 | None:intergenic | 25.0% |
| !! | CTTGTATTATTTTCTCAATC+TGG | + | chr4_4:67013345-67013364 | Msa0697020:intron | 25.0% |
| ! | AGCATAGTGTAACATTATAA+TGG | + | chr4_4:67013368-67013387 | Msa0697020:intron | 25.0% |
| !!! | CTCTAACATTGTTTTTCATT+CGG | + | chr4_4:67013400-67013419 | Msa0697020:intron | 25.0% |
| !! | TACAGCAAAGTTTGTTTAAA+AGG | - | chr4_4:67013439-67013458 | None:intergenic | 25.0% |
| ! | TAAATGTGAAAGTTGTTCAA+AGG | + | chr4_4:67013738-67013757 | Msa0697020:intron | 25.0% |
| ! | AAATGTGAAAGTTGTTCAAA+GGG | + | chr4_4:67013739-67013758 | Msa0697020:intron | 25.0% |
| ! | ATTAAAGCCATATCATTTGT+TGG | + | chr4_4:67013882-67013901 | Msa0697020:CDS | 25.0% |
| ! | TATAAGACAACTTACAACAT+TGG | - | chr4_4:67013910-67013929 | None:intergenic | 25.0% |
| ! | GATAGAAAGATATATAGAAG+AGG | + | chr4_4:67014034-67014053 | Msa0697020:intron | 25.0% |
| !!! | GGTAATAGTTTGCAAAATTT+TGG | - | chr4_4:67014076-67014095 | None:intergenic | 25.0% |
| ! | ACTAAAATACAACATAAAGG+GGG | - | chr4_4:67014098-67014117 | None:intergenic | 25.0% |
| !! | GAAGTCCTTATTTGTATTAA+AGG | + | chr4_4:67014127-67014146 | Msa0697020:intron | 25.0% |
| ! | TATATTAACCAATTTCACTG+AGG | - | chr4_4:67014222-67014241 | None:intergenic | 25.0% |
| ! | AACATGTAATGATATGAAGT+TGG | + | chr4_4:67014242-67014261 | Msa0697020:intron | 25.0% |
| ! | GTTGGCCAATTAATAAAATT+TGG | + | chr4_4:67014260-67014279 | Msa0697020:intron | 25.0% |
| !! | GCACACCAAATTTTATTAAT+TGG | - | chr4_4:67014268-67014287 | None:intergenic | 25.0% |
| ! | TGATCTAGATTTATTAAACG+TGG | + | chr4_4:67014551-67014570 | Msa0697020:intron | 25.0% |
| !! | CATTTTCTGCATAATCATAT+AGG | + | chr4_4:67014584-67014603 | Msa0697020:intron | 25.0% |
| !!! | TTTTTTTTATCTTTTGGCCT+TGG | + | chr4_4:67014744-67014763 | Msa0697020:intron | 25.0% |
| ! | TACAATAACTCAGTTGAAAA+GGG | - | chr4_4:67015136-67015155 | None:intergenic | 25.0% |
| ! | ATACAATAACTCAGTTGAAA+AGG | - | chr4_4:67015137-67015156 | None:intergenic | 25.0% |
| ! | TAAAATCAATCATGCTAAAC+AGG | + | chr4_4:67015361-67015380 | Msa0697020:intron | 25.0% |
| ! | CAATAGTAACTTTATTCTAC+AGG | + | chr4_4:67015397-67015416 | Msa0697020:intron | 25.0% |
| ! | ATCATTATATGGGAAAACAA+AGG | - | chr4_4:67015444-67015463 | None:intergenic | 25.0% |
| ! | GATAAGCAATCCTTAAAATT+GGG | - | chr4_4:67015508-67015527 | None:intergenic | 25.0% |
| ! | TGATAAGCAATCCTTAAAAT+TGG | - | chr4_4:67015509-67015528 | None:intergenic | 25.0% |
| ! | TGATATTTGATAAGATAGTG+GGG | - | chr4_4:67015587-67015606 | None:intergenic | 25.0% |
| ! | GTGATATTTGATAAGATAGT+GGG | - | chr4_4:67015588-67015607 | None:intergenic | 25.0% |
| ! | AGTGATATTTGATAAGATAG+TGG | - | chr4_4:67015589-67015608 | None:intergenic | 25.0% |
| !!! | TCTGTTTTGTTTTTATCTTC+AGG | + | chr4_4:67015871-67015890 | Msa0697020:intron | 25.0% |
| !!! | GTTTTTGTTGATAATGCTTA+TGG | - | chr4_4:67015915-67015934 | None:intergenic | 25.0% |
| ! | GGTAAATATATACTACTTCT+TGG | + | chr4_4:67016097-67016116 | Msa0697020:intron | 25.0% |
| ! | AATATATACTACTTCTTGGA+AGG | + | chr4_4:67016101-67016120 | Msa0697020:intron | 25.0% |
| ! | ATGCAATAATGCAATATGAT+TGG | - | chr4_4:67016193-67016212 | None:intergenic | 25.0% |
| ! | AATCATATTGCATTATTGCA+TGG | + | chr4_4:67016192-67016211 | Msa0697020:intron | 25.0% |
| ! | ATTTGTTTAAATACATTGGG+GGG | + | chr4_4:67016457-67016476 | Msa0697020:intron | 25.0% |
| ! | CAGTTGTAAAATGATCATTA+AGG | - | chr4_4:67016528-67016547 | None:intergenic | 25.0% |
| !! | AATGATCATTTTACAACTGT+TGG | + | chr4_4:67016529-67016548 | Msa0697020:intron | 25.0% |
| ! | GATTTGAATTGTTGAATTGT+AGG | + | chr4_4:67016703-67016722 | Msa0697020:intron | 25.0% |
| ! | AAATTATACACATGACTTTC+TGG | - | chr4_4:67016844-67016863 | None:intergenic | 25.0% |
| ! | CTTTGTACTCTTCAATAAAA+TGG | + | chr4_4:67016879-67016898 | Msa0697020:three_prime_UTR | 25.0% |
| ! | AAGCAGAAAAGAAAAACAAA+AGG | - | chr4_4:67016926-67016945 | None:intergenic | 25.0% |
| GTAGTTGAATTTGATACGAA+AGG | + | chr4_4:67012014-67012033 | Msa0697020:five_prime_UTR | 30.0% | |
| GAATTTGATACGAAAGGATT+TGG | + | chr4_4:67012020-67012039 | Msa0697020:five_prime_UTR | 30.0% | |
| ACTAGGAAAGGAAAAGAATA+TGG | - | chr4_4:67012198-67012217 | None:intergenic | 30.0% | |
| ! | ACTTTTCACAATAAGCATGA+CGG | - | chr4_4:67012859-67012878 | None:intergenic | 30.0% |
| ! | TAAACAAACTTTGCTGTAGT+TGG | + | chr4_4:67013441-67013460 | Msa0697020:intron | 30.0% |
| ! | AAACAAACTTTGCTGTAGTT+GGG | + | chr4_4:67013442-67013461 | Msa0697020:intron | 30.0% |
| ! | TTTTATGCTAAACCATCTAG+TGG | + | chr4_4:67013473-67013492 | Msa0697020:intron | 30.0% |
| TTTATGCTAAACCATCTAGT+GGG | + | chr4_4:67013474-67013493 | Msa0697020:intron | 30.0% | |
| !! | TGATATTTGTTGTTTGTTCC+AGG | + | chr4_4:67013518-67013537 | Msa0697020:intron | 30.0% |
| AAAGAGATGATAGCATACAT+GGG | - | chr4_4:67013618-67013637 | None:intergenic | 30.0% | |
| AAAAGAGATGATAGCATACA+TGG | - | chr4_4:67013619-67013638 | None:intergenic | 30.0% | |
| TAGTGAGTATCAAAAGAAAC+AGG | - | chr4_4:67013663-67013682 | None:intergenic | 30.0% | |
| TCACTAATTAAATGTGCTCA+TGG | + | chr4_4:67013677-67013696 | Msa0697020:intron | 30.0% | |
| CACTAATTAAATGTGCTCAT+GGG | + | chr4_4:67013678-67013697 | Msa0697020:intron | 30.0% | |
| AATACGATGAAAACACCAAA+TGG | - | chr4_4:67013712-67013731 | None:intergenic | 30.0% | |
| !!! | ATTGTGCTTTGTTTTTCTCA+CGG | + | chr4_4:67013799-67013818 | Msa0697020:intron | 30.0% |
| GGATTGATATCCTTGATTAT+TGG | + | chr4_4:67013820-67013839 | Msa0697020:intron | 30.0% | |
| AATATCGTCATCATCACAAA+TGG | - | chr4_4:67013865-67013884 | None:intergenic | 30.0% | |
| !! | TTCTGACAAGATTGCTTTTA+AGG | - | chr4_4:67013981-67014000 | None:intergenic | 30.0% |
| TCTATCTAAGCACATTCAAA+CGG | - | chr4_4:67014020-67014039 | None:intergenic | 30.0% | |
| CTAAAATACAACATAAAGGG+GGG | - | chr4_4:67014097-67014116 | None:intergenic | 30.0% | |
| ! | TCCTTATTTGTATTAAAGGC+TGG | + | chr4_4:67014131-67014150 | Msa0697020:intron | 30.0% |
| TCCAGCCTTTAATACAAATA+AGG | - | chr4_4:67014135-67014154 | None:intergenic | 30.0% | |
| !! | TCATTTTTCCTCAGTGAAAT+TGG | + | chr4_4:67014211-67014230 | Msa0697020:intron | 30.0% |
| CAGTTGAAAAGGGAAATTAA+GGG | - | chr4_4:67015126-67015145 | None:intergenic | 30.0% | |
| TCAGTTGAAAAGGGAAATTA+AGG | - | chr4_4:67015127-67015146 | None:intergenic | 30.0% | |
| ! | TGCGTATAAATTGATTCACT+AGG | + | chr4_4:67015207-67015226 | Msa0697020:intron | 30.0% |
| AACCATGTATCTAATGCATT+GGG | - | chr4_4:67015277-67015296 | None:intergenic | 30.0% | |
| AAACCATGTATCTAATGCAT+TGG | - | chr4_4:67015278-67015297 | None:intergenic | 30.0% | |
| TAATCAAAGGAGAGAAAACA+AGG | - | chr4_4:67015317-67015336 | None:intergenic | 30.0% | |
| TAAAATTGGGCAGAAGAAAT+GGG | - | chr4_4:67015495-67015514 | None:intergenic | 30.0% | |
| TTAAAATTGGGCAGAAGAAA+TGG | - | chr4_4:67015496-67015515 | None:intergenic | 30.0% | |
| ! | ATTTCTTCTGCCCAATTTTA+AGG | + | chr4_4:67015495-67015514 | Msa0697020:intron | 30.0% |
| ! | TATGAATCTGGCAATTTTGT+TGG | + | chr4_4:67015561-67015580 | Msa0697020:CDS | 30.0% |
| GCTTCTATATTTACTACTTC+TGG | + | chr4_4:67016032-67016051 | Msa0697020:CDS | 30.0% | |
| TTCCAACCAGTATTTGAATT+AGG | + | chr4_4:67016151-67016170 | Msa0697020:intron | 30.0% | |
| ACAACTCCTAATTCAAATAC+TGG | - | chr4_4:67016160-67016179 | None:intergenic | 30.0% | |
| TTTGTTTAAATACATTGGGG+GGG | + | chr4_4:67016458-67016477 | Msa0697020:intron | 30.0% | |
| !! | ATTTTACAACTGTTGGTGAA+AGG | + | chr4_4:67016536-67016555 | Msa0697020:intron | 30.0% |
| !! | GAGTTTGACTTGTAACTTTA+AGG | - | chr4_4:67016576-67016595 | None:intergenic | 30.0% |
| ! | CCTAATATAAACCCTCATTT+TGG | - | chr4_4:67016980-67016999 | None:intergenic | 30.0% |
| CCAAAATGAGGGTTTATATT+AGG | + | chr4_4:67016977-67016996 | Msa0697020:three_prime_UTR | 30.0% | |
| TAAGGACGAATCAATTGACA+GGG | - | chr4_4:67012067-67012086 | None:intergenic | 35.0% | |
| ATAAGGACGAATCAATTGAC+AGG | - | chr4_4:67012068-67012087 | None:intergenic | 35.0% | |
| TTCCACTGATCGCTATAAAA+GGG | + | chr4_4:67012442-67012461 | Msa0697020:CDS | 35.0% | |
| AAAAGGGTTCCCAATCTTAT+TGG | + | chr4_4:67012458-67012477 | Msa0697020:CDS | 35.0% | |
| AAAGGGTTCCCAATCTTATT+GGG | + | chr4_4:67012459-67012478 | Msa0697020:CDS | 35.0% | |
| ! | CACTTACAGGGTTTAAAACA+TGG | - | chr4_4:67012520-67012539 | None:intergenic | 35.0% |
| CTTAATATAACCACCGAACA+AGG | + | chr4_4:67012926-67012945 | Msa0697020:CDS | 35.0% | |
| TTTACATCATTTAGAGGTGG+TGG | + | chr4_4:67013087-67013106 | Msa0697020:intron | 35.0% | |
| ATCATTGCAGGAAAGTTGAA+AGG | - | chr4_4:67013226-67013245 | None:intergenic | 35.0% | |
| CAATTCTGCAAGCATTATAG+AGG | - | chr4_4:67013546-67013565 | None:intergenic | 35.0% | |
| CTCTATAATGCTTGCAGAAT+TGG | + | chr4_4:67013544-67013563 | Msa0697020:CDS | 35.0% | |
| GGTGTCTTAAATGTTGTTCA+TGG | + | chr4_4:67013590-67013609 | Msa0697020:CDS | 35.0% | |
| ! | TATCCTTGATTATTGGTGAC+AGG | + | chr4_4:67013827-67013846 | Msa0697020:intron | 35.0% |
| ATTGGAGCCAACAAATGATA+TGG | - | chr4_4:67013892-67013911 | None:intergenic | 35.0% | |
| !! | ATTTGGTGTGCAGTCTAATA+TGG | + | chr4_4:67014277-67014296 | Msa0697020:intron | 35.0% |
| ! | TTTGGTGTGCAGTCTAATAT+GGG | + | chr4_4:67014278-67014297 | Msa0697020:intron | 35.0% |
| ! | CATGACGATTGCATGATTTT+TGG | - | chr4_4:67014306-67014325 | None:intergenic | 35.0% |
| AACACAGAAATCGTGGTAAA+CGG | - | chr4_4:67014476-67014495 | None:intergenic | 35.0% | |
| !!! | CTGTGTTGGCTTTTTTTACT+TGG | + | chr4_4:67014489-67014508 | Msa0697020:intron | 35.0% |
| TTCTGCATAATCATATAGGG+TGG | + | chr4_4:67014588-67014607 | Msa0697020:intron | 35.0% | |
| CTAGAGAAAATACCTTGTGA+CGG | + | chr4_4:67014685-67014704 | Msa0697020:intron | 35.0% | |
| ! | AGCGTTTACTTTAAGAGCTT+TGG | - | chr4_4:67014850-67014869 | None:intergenic | 35.0% |
| AAAGCTCTTAAAGTAAACGC+TGG | + | chr4_4:67014849-67014868 | Msa0697020:CDS | 35.0% | |
| TCTTAAAGTAAACGCTGGAA+CGG | + | chr4_4:67014854-67014873 | Msa0697020:CDS | 35.0% | |
| ! | TGCACAGATTAGTTCAATCT+GGG | + | chr4_4:67015043-67015062 | Msa0697020:CDS | 35.0% |
| GCTTGATGGAAGAAATATAG+TGG | + | chr4_4:67015089-67015108 | Msa0697020:CDS | 35.0% | |
| ACCATGTATCTAATGCATTG+GGG | - | chr4_4:67015276-67015295 | None:intergenic | 35.0% | |
| AAAATTGGGCAGAAGAAATG+GGG | - | chr4_4:67015494-67015513 | None:intergenic | 35.0% | |
| TTCATACGTGCATGACAAAT+AGG | + | chr4_4:67015530-67015549 | Msa0697020:intron | 35.0% | |
| AATTGCCAGATTCATATCCT+GGG | - | chr4_4:67015557-67015576 | None:intergenic | 35.0% | |
| AAATTGCCAGATTCATATCC+TGG | - | chr4_4:67015558-67015577 | None:intergenic | 35.0% | |
| CTTACCAATCTCAAATCTCA+AGG | + | chr4_4:67015637-67015656 | Msa0697020:intron | 35.0% | |
| ! | GAAACCTTGAGATTTGAGAT+TGG | - | chr4_4:67015644-67015663 | None:intergenic | 35.0% |
| ACATCAACTCTCTATTCTGA+AGG | - | chr4_4:67015680-67015699 | None:intergenic | 35.0% | |
| GTCTTTAACATTACACACAC+AGG | + | chr4_4:67015721-67015740 | Msa0697020:intron | 35.0% | |
| TTTAACATTACACACACAGG+AGG | + | chr4_4:67015724-67015743 | Msa0697020:intron | 35.0% | |
| CTTACTCTATCATTTCCAAC+AGG | + | chr4_4:67015997-67016016 | Msa0697020:intron | 35.0% | |
| TCTATCATTTCCAACAGGTA+TGG | + | chr4_4:67016002-67016021 | Msa0697020:intron | 35.0% | |
| ATTTCCAACAGGTATGGAAA+TGG | + | chr4_4:67016008-67016027 | Msa0697020:intron | 35.0% | |
| GAAATTTCAGACTGAGATTG+AGG | + | chr4_4:67016067-67016086 | Msa0697020:CDS | 35.0% | |
| CTCCTAATTCAAATACTGGT+TGG | - | chr4_4:67016156-67016175 | None:intergenic | 35.0% | |
| ATGATACTCATTATGGATCC+TGG | + | chr4_4:67016285-67016304 | Msa0697020:CDS | 35.0% | |
| GTGAATGAGAAAAATGGCAA+AGG | - | chr4_4:67016343-67016362 | None:intergenic | 35.0% | |
| !!! | TTGCCATTTTTCTCATTCAC+TGG | + | chr4_4:67016343-67016362 | Msa0697020:intron | 35.0% |
| TTGCCAGTGAATGAGAAAAA+TGG | - | chr4_4:67016349-67016368 | None:intergenic | 35.0% | |
| ! | ATTGCAGACAAGCTAGATTT+TGG | - | chr4_4:67016421-67016440 | None:intergenic | 35.0% |
| TTGTTTAAATACATTGGGGG+GGG | + | chr4_4:67016459-67016478 | Msa0697020:intron | 35.0% | |
| CAAGTCAAACTCTTACTACT+AGG | + | chr4_4:67016584-67016603 | Msa0697020:intron | 35.0% | |
| TCAAAACAATAACTCAGCAG+TGG | + | chr4_4:67016755-67016774 | Msa0697020:CDS | 35.0% | |
| !! | GATCAAGATTTTTGAGAGGT+TGG | - | chr4_4:67016820-67016839 | None:intergenic | 35.0% |
| !! | TGGTGATCAAGATTTTTGAG+AGG | - | chr4_4:67016824-67016843 | None:intergenic | 35.0% |
| ACTCTTCAATAAAATGGCGT+AGG | + | chr4_4:67016885-67016904 | Msa0697020:three_prime_UTR | 35.0% | |
| AAGGACGAATCAATTGACAG+GGG | - | chr4_4:67012066-67012085 | None:intergenic | 40.0% | |
| ! | GTTGTTTGTGCTACTAGGAA+AGG | - | chr4_4:67012210-67012229 | None:intergenic | 40.0% |
| TGATCGATGATCGTGTATCT+GGG | - | chr4_4:67012318-67012337 | None:intergenic | 40.0% | |
| TTATAGCGATCAGTGGAAGA+TGG | - | chr4_4:67012440-67012459 | None:intergenic | 40.0% | |
| CTTCCACTGATCGCTATAAA+AGG | + | chr4_4:67012441-67012460 | Msa0697020:CDS | 40.0% | |
| ! | AACCCTTTTATAGCGATCAG+TGG | - | chr4_4:67012447-67012466 | None:intergenic | 40.0% |
| AAGGGTTCCCAATCTTATTG+GGG | + | chr4_4:67012460-67012479 | Msa0697020:CDS | 40.0% | |
| AACCTTCCCCCAATAAGATT+GGG | - | chr4_4:67012470-67012489 | None:intergenic | 40.0% | |
| AAACCTTCCCCCAATAAGAT+TGG | - | chr4_4:67012471-67012490 | None:intergenic | 40.0% | |
| ! | TTGTCTGATTGGCTGATCAT+AGG | + | chr4_4:67012602-67012621 | Msa0697020:intron | 40.0% |
| ! | TTCGCAAGTTCCATTGACTA+CGG | + | chr4_4:67012641-67012660 | Msa0697020:CDS | 40.0% |
| AACTCATCATCCGTAGTCAA+TGG | - | chr4_4:67012654-67012673 | None:intergenic | 40.0% | |
| CTTCAGTGTCTTTCCTTGTT+CGG | - | chr4_4:67012942-67012961 | None:intergenic | 40.0% | |
| ATGTGTTTCGTGGTTTAGGT+TGG | + | chr4_4:67012975-67012994 | Msa0697020:intron | 40.0% | |
| TGGAATGGGAACTCTACAAA+TGG | + | chr4_4:67013120-67013139 | Msa0697020:CDS | 40.0% | |
| GGAATGGGAACTCTACAAAT+GGG | + | chr4_4:67013121-67013140 | Msa0697020:CDS | 40.0% | |
| GAATGGGAACTCTACAAATG+GGG | + | chr4_4:67013122-67013141 | Msa0697020:CDS | 40.0% | |
| AATGGGAACTCTACAAATGG+GGG | + | chr4_4:67013123-67013142 | Msa0697020:CDS | 40.0% | |
| TACAGTGTCAGAGAACCAAT+TGG | + | chr4_4:67013181-67013200 | Msa0697020:CDS | 40.0% | |
| ! | AACCAATTGGTGTTTGTGCT+GGG | + | chr4_4:67013194-67013213 | Msa0697020:CDS | 40.0% |
| TTCCTGCAATGATTCCATTG+TGG | + | chr4_4:67013233-67013252 | Msa0697020:CDS | 40.0% | |
| ATCCACAATGGAATCATTGC+AGG | - | chr4_4:67013238-67013257 | None:intergenic | 40.0% | |
| ATAGAAAGCCAACATCACCT+GGG | - | chr4_4:67013318-67013337 | None:intergenic | 40.0% | |
| ! | ACAACATTTAAGACACCCTC+AGG | - | chr4_4:67013587-67013606 | None:intergenic | 40.0% |
| ! | TCATGGGCTCTTTTTCCATT+TGG | + | chr4_4:67013694-67013713 | Msa0697020:intron | 40.0% |
| CATCCTGTCACCAATAATCA+AGG | - | chr4_4:67013833-67013852 | None:intergenic | 40.0% | |
| !!! | TGCTTTTAAGGTCACAGAAG+AGG | - | chr4_4:67013969-67013988 | None:intergenic | 40.0% |
| TATTCAAGAGCAGCAGCTAA+AGG | + | chr4_4:67014164-67014183 | Msa0697020:CDS | 40.0% | |
| ATTCAAGAGCAGCAGCTAAA+GGG | + | chr4_4:67014165-67014184 | Msa0697020:CDS | 40.0% | |
| TTGGTGTGCAGTCTAATATG+GGG | + | chr4_4:67014279-67014298 | Msa0697020:intron | 40.0% | |
| GTAGCATCAATATTTGCGTC+TGG | - | chr4_4:67014329-67014348 | None:intergenic | 40.0% | |
| GTAAATGCTTTAGTTGCTGC+TGG | + | chr4_4:67014350-67014369 | Msa0697020:CDS | 40.0% | |
| !!! | TCTCAGCACAGTTGTTTTTG+TGG | + | chr4_4:67014403-67014422 | Msa0697020:CDS | 40.0% |
| !!! | CTCAGCACAGTTGTTTTTGT+GGG | + | chr4_4:67014404-67014423 | Msa0697020:CDS | 40.0% |
| GTTTACCACGATTTCTGTGT+TGG | + | chr4_4:67014475-67014494 | Msa0697020:intron | 40.0% | |
| AAAAGCCAACACAGAAATCG+TGG | - | chr4_4:67014483-67014502 | None:intergenic | 40.0% | |
| ACGGAGATGTATGGATTCAT+TGG | + | chr4_4:67014704-67014723 | Msa0697020:intron | 40.0% | |
| ATCCTCCACAATATTTGTGC+AGG | + | chr4_4:67014802-67014821 | Msa0697020:intron | 40.0% | |
| TCCTCCACAATATTTGTGCA+GGG | + | chr4_4:67014803-67014822 | Msa0697020:intron | 40.0% | |
| ! | CAAACCTGTTTGCTGATAAC+TGG | - | chr4_4:67014900-67014919 | None:intergenic | 40.0% |
| ! | ACAGGTTTGTTTACTCTCTC+TGG | + | chr4_4:67014911-67014930 | Msa0697020:intron | 40.0% |
| !! | AAAATTCTTACCGGCTTCAC+AGG | + | chr4_4:67015008-67015027 | Msa0697020:intron | 40.0% |
| ! | GTGCACAGATTAGTTCAATC+TGG | + | chr4_4:67015042-67015061 | Msa0697020:CDS | 40.0% |
| ! | GCACAGATTAGTTCAATCTG+GGG | + | chr4_4:67015044-67015063 | Msa0697020:CDS | 40.0% |
| TCCCCAATGCATTAGATACA+TGG | + | chr4_4:67015272-67015291 | Msa0697020:intron | 40.0% | |
| AAATTGGGCAGAAGAAATGG+GGG | - | chr4_4:67015493-67015512 | None:intergenic | 40.0% | |
| ATCAAATATCACTGCCGACA+TGG | + | chr4_4:67015596-67015615 | Msa0697020:CDS | 40.0% | |
| ! | CACACACAGGAGGAAATTTT+TGG | + | chr4_4:67015734-67015753 | Msa0697020:intron | 40.0% |
| CCTCCATGAAAAGAAGAACT+GGG | - | chr4_4:67015760-67015779 | None:intergenic | 40.0% | |
| ACCTCCATGAAAAGAAGAAC+TGG | - | chr4_4:67015761-67015780 | None:intergenic | 40.0% | |
| ACACAAATGTCTGTCTCATC+TGG | - | chr4_4:67015831-67015850 | None:intergenic | 40.0% | |
| GATGAGACAGACATTTGTGT+TGG | + | chr4_4:67015831-67015850 | Msa0697020:intron | 40.0% | |
| TTATCTTCAGGCTGATAGCT+TGG | + | chr4_4:67015883-67015902 | Msa0697020:intron | 40.0% | |
| ACTAGATTCTCTGTACCACA+TGG | + | chr4_4:67016215-67016234 | Msa0697020:intron | 40.0% | |
| TACAGAGAATCTAGTCCATG+TGG | - | chr4_4:67016210-67016229 | None:intergenic | 40.0% | |
| AATGGCAAAGGAACTGGAAT+AGG | - | chr4_4:67016331-67016350 | None:intergenic | 40.0% | |
| GAGAAAAATGGCAAAGGAAC+TGG | - | chr4_4:67016337-67016356 | None:intergenic | 40.0% | |
| TTTCTCATTCACTGGCAACA+AGG | + | chr4_4:67016351-67016370 | Msa0697020:intron | 40.0% | |
| TGTTTAAATACATTGGGGGG+GGG | + | chr4_4:67016460-67016479 | Msa0697020:intron | 40.0% | |
| TCTTACTACTAGGCTGATCA+TGG | + | chr4_4:67016594-67016613 | Msa0697020:intron | 40.0% | |
| TGTTGAATTGTAGGCAAAGC+AGG | + | chr4_4:67016712-67016731 | Msa0697020:intron | 40.0% | |
| GTTGAATTGTAGGCAAAGCA+GGG | + | chr4_4:67016713-67016732 | Msa0697020:intron | 40.0% | |
| TTGAATTGTAGGCAAAGCAG+GGG | + | chr4_4:67016714-67016733 | Msa0697020:intron | 40.0% | |
| AACAATAACTCAGCAGTGGA+AGG | + | chr4_4:67016759-67016778 | Msa0697020:CDS | 40.0% | |
| TGGCAGTAGCAAGATTAACA+TGG | + | chr4_4:67016789-67016808 | Msa0697020:CDS | 40.0% | |
| AGGACGAATCAATTGACAGG+GGG | - | chr4_4:67012065-67012084 | None:intergenic | 45.0% | |
| !! | GCTGTGTTGTTTGTGCTACT+AGG | - | chr4_4:67012215-67012234 | None:intergenic | 45.0% |
| ACAAACAACACAGCCAAACC+AGG | + | chr4_4:67012221-67012240 | Msa0697020:five_prime_UTR | 45.0% | |
| AATAGAAAGCTGCGACATCC+TGG | - | chr4_4:67012242-67012261 | None:intergenic | 45.0% | |
| TCGCAGCTTTCTATTCAACG+AGG | + | chr4_4:67012247-67012266 | Msa0697020:CDS | 45.0% | |
| GTGATCGATGATCGTGTATC+TGG | - | chr4_4:67012319-67012338 | None:intergenic | 45.0% | |
| ATGCCTCAGATCTCTGCTTT+CGG | + | chr4_4:67012386-67012405 | Msa0697020:CDS | 45.0% | |
| AACCTCCCATTTCTCAACAG+CGG | + | chr4_4:67012409-67012428 | Msa0697020:CDS | 45.0% | |
| TTGAGCCGCTGTTGAGAAAT+GGG | - | chr4_4:67012417-67012436 | None:intergenic | 45.0% | |
| AGGGTTCCCAATCTTATTGG+GGG | + | chr4_4:67012461-67012480 | Msa0697020:CDS | 45.0% | |
| TTCCCAATCTTATTGGGGGA+AGG | + | chr4_4:67012465-67012484 | Msa0697020:CDS | 45.0% | |
| TGCTGTATCTGCAGCTAAGA+AGG | + | chr4_4:67012680-67012699 | Msa0697020:CDS | 45.0% | |
| !! | CTAAGAAGGCATTTCCGTCA+TGG | + | chr4_4:67012694-67012713 | Msa0697020:CDS | 45.0% |
| GGAGCTTCAACATAACACGT+TGG | - | chr4_4:67012743-67012762 | None:intergenic | 45.0% | |
| ACGTGTTATGTTGAAGCTCC+AGG | + | chr4_4:67012743-67012762 | Msa0697020:CDS | 45.0% | |
| TATCTCTGCGTATAAGCTCC+TGG | - | chr4_4:67012764-67012783 | None:intergenic | 45.0% | |
| GGAGCTTATACGCAGAGATA+TGG | + | chr4_4:67012764-67012783 | Msa0697020:CDS | 45.0% | |
| CGAACAAGGAAAGACACTGA+AGG | + | chr4_4:67012940-67012959 | Msa0697020:CDS | 45.0% | |
| AAGACACTGAAGGATGCTCA+AGG | + | chr4_4:67012950-67012969 | Msa0697020:CDS | 45.0% | |
| GGAGATGTGTTTCGTGGTTT+AGG | + | chr4_4:67012971-67012990 | Msa0697020:CDS | 45.0% | |
| GTGGAACATGCTTGTGGAAT+GGG | + | chr4_4:67013106-67013125 | Msa0697020:CDS | 45.0% | |
| ! | GAACCAATTGGTGTTTGTGC+TGG | + | chr4_4:67013193-67013212 | Msa0697020:CDS | 45.0% |
| ATCCCAGCACAAACACCAAT+TGG | - | chr4_4:67013199-67013218 | None:intergenic | 45.0% | |
| ATTGCCACAAGTAACAGCCA+CGG | - | chr4_4:67013266-67013285 | None:intergenic | 45.0% | |
| AAACCATCAGAGAAAGACCC+AGG | + | chr4_4:67013298-67013317 | Msa0697020:CDS | 45.0% | |
| GATAGAAAGCCAACATCACC+TGG | - | chr4_4:67013319-67013338 | None:intergenic | 45.0% | |
| CTAAACCATCTAGTGGGATG+AGG | + | chr4_4:67013480-67013499 | Msa0697020:intron | 45.0% | |
| AAAAGCCTCATCCCACTAGA+TGG | - | chr4_4:67013488-67013507 | None:intergenic | 45.0% | |
| ! | ATCTAGTGGGATGAGGCTTT+TGG | + | chr4_4:67013487-67013506 | Msa0697020:intron | 45.0% |
| AATGCTTGCAGAATTGGCAC+TGG | + | chr4_4:67013550-67013569 | Msa0697020:CDS | 45.0% | |
| TGGTGTGCAGTCTAATATGG+GGG | + | chr4_4:67014280-67014299 | Msa0697020:intron | 45.0% | |
| !!! | GCTTTAGTTGCTGCTGGTTT+TGG | + | chr4_4:67014356-67014375 | Msa0697020:CDS | 45.0% |
| !!! | AGCACAGTTGTTTTTGTGGG+AGG | + | chr4_4:67014407-67014426 | Msa0697020:CDS | 45.0% |
| GGAAATCAGTCGAAGCAGAA+TGG | - | chr4_4:67014455-67014474 | None:intergenic | 45.0% | |
| ! | TACCTTGTGACGGAGATGTA+TGG | + | chr4_4:67014695-67014714 | Msa0697020:intron | 45.0% |
| ATCCATACATCTCCGTCACA+AGG | - | chr4_4:67014700-67014719 | None:intergenic | 45.0% | |
| GTTGCCCTGCACAAATATTG+TGG | - | chr4_4:67014810-67014829 | None:intergenic | 45.0% | |
| TGGTCCAGTTATCAGCAAAC+AGG | + | chr4_4:67014893-67014912 | Msa0697020:CDS | 45.0% | |
| TCTTCCATCAAGCAGTAGTC+TGG | - | chr4_4:67015082-67015101 | None:intergenic | 45.0% | |
| CCTGTCGGACACATAATCAA+AGG | - | chr4_4:67015330-67015349 | None:intergenic | 45.0% | |
| CCTTTGATTATGTGTCCGAC+AGG | + | chr4_4:67015327-67015346 | Msa0697020:intron | 45.0% | |
| GGAAAACAAAGGCCTACTCA+AGG | - | chr4_4:67015433-67015452 | None:intergenic | 45.0% | |
| AATTGGGCAGAAGAAATGGG+GGG | - | chr4_4:67015492-67015511 | None:intergenic | 45.0% | |
| TAGGTCCCAGGATATGAATC+TGG | + | chr4_4:67015549-67015568 | Msa0697020:intron | 45.0% | |
| TACCTTGTAGCACTCCATGT+CGG | - | chr4_4:67015613-67015632 | None:intergenic | 45.0% | |
| ! | TGGCCCAGTTCTTCTTTTCA+TGG | + | chr4_4:67015754-67015773 | Msa0697020:CDS | 45.0% |
| ! | CCCAGTTCTTCTTTTCATGG+AGG | + | chr4_4:67015757-67015776 | Msa0697020:CDS | 45.0% |
| AGCACCATTTCCATACCTGT+TGG | - | chr4_4:67016015-67016034 | None:intergenic | 45.0% | |
| TTTCAGACTGAGATTGAGGC+TGG | + | chr4_4:67016071-67016090 | Msa0697020:CDS | 45.0% | |
| TTCAGACTGAGATTGAGGCT+GGG | + | chr4_4:67016072-67016091 | Msa0697020:CDS | 45.0% | |
| GCTGGCGATCTCAATTTCTA+TGG | + | chr4_4:67016382-67016401 | Msa0697020:intron | 45.0% | |
| GTTTAAATACATTGGGGGGG+GGG | + | chr4_4:67016461-67016480 | Msa0697020:intron | 45.0% | |
| TTTAAATACATTGGGGGGGG+GGG | + | chr4_4:67016462-67016481 | Msa0697020:intron | 45.0% | |
| !!! | TTTTTTTTTTTTTTATCTTT+TGG | + | chr4_4:67014738-67014757 | Msa0697020:intron | 5.0% |
| GGACGAATCAATTGACAGGG+GGG | - | chr4_4:67012064-67012083 | None:intergenic | 50.0% | |
| AAAGCTGCGACATCCTGGTT+TGG | - | chr4_4:67012237-67012256 | None:intergenic | 50.0% | |
| GATGATCGTGTATCTGGGCT+GGG | - | chr4_4:67012313-67012332 | None:intergenic | 50.0% | |
| GTTCCGAAAGCAGAGATCTG+AGG | - | chr4_4:67012392-67012411 | None:intergenic | 50.0% | |
| GTTGAGCCGCTGTTGAGAAA+TGG | - | chr4_4:67012418-67012437 | None:intergenic | 50.0% | |
| ! | ACTGGAGTGTTACGCCATGA+CGG | - | chr4_4:67012711-67012730 | None:intergenic | 50.0% |
| CAGTGTCTTTCCTTGTTCGG+TGG | - | chr4_4:67012939-67012958 | None:intergenic | 50.0% | |
| GCTCAAGGAGATGTGTTTCG+TGG | + | chr4_4:67012965-67012984 | Msa0697020:CDS | 50.0% | |
| GGTGGAACATGCTTGTGGAA+TGG | + | chr4_4:67013105-67013124 | Msa0697020:CDS | 50.0% | |
| TCCATTGTGGATGTTTCCCG+TGG | + | chr4_4:67013246-67013265 | Msa0697020:CDS | 50.0% | |
| ! | TTTCCCGTGGCTGTTACTTG+TGG | + | chr4_4:67013259-67013278 | Msa0697020:CDS | 50.0% |
| TTGCCACAAGTAACAGCCAC+GGG | - | chr4_4:67013265-67013284 | None:intergenic | 50.0% | |
| TCACCTGGGTCTTTCTCTGA+TGG | - | chr4_4:67013304-67013323 | None:intergenic | 50.0% | |
| GAGAAAGACCCAGGTGATGT+TGG | + | chr4_4:67013307-67013326 | Msa0697020:intron | 50.0% | |
| !! | GCAAGCATTATAGAGGCACC+TGG | - | chr4_4:67013539-67013558 | None:intergenic | 50.0% |
| ! | AGCTAAAGGGAAGCGTGTTC+AGG | + | chr4_4:67014178-67014197 | Msa0697020:CDS | 50.0% |
| ! | AAAGGGAAGCGTGTTCAGGT+AGG | + | chr4_4:67014182-67014201 | Msa0697020:intron | 50.0% |
| TTGTGGGAGGTTCACAAGCA+TGG | + | chr4_4:67014420-67014439 | Msa0697020:CDS | 50.0% | |
| GCCCTGCACAAATATTGTGG+AGG | - | chr4_4:67014807-67014826 | None:intergenic | 50.0% | |
| ACGGAACCTGATGCAGATCT+TGG | + | chr4_4:67014873-67014892 | Msa0697020:CDS | 50.0% | |
| ACTGGACCAAGATCTGCATC+AGG | - | chr4_4:67014882-67014901 | None:intergenic | 50.0% | |
| GGCTAGAACAGTCCTTGAGT+AGG | + | chr4_4:67015418-67015437 | Msa0697020:intron | 50.0% | |
| GTGCATGACAAATAGGTCCC+AGG | + | chr4_4:67015537-67015556 | Msa0697020:intron | 50.0% | |
| !! | CTACTTCTGGTGTTGCTGCT+AGG | + | chr4_4:67016045-67016064 | Msa0697020:CDS | 50.0% |
| CTCATTATGGATCCTGGACC+AGG | + | chr4_4:67016291-67016310 | Msa0697020:CDS | 50.0% | |
| TTATGGATCCTGGACCAGGT+TGG | + | chr4_4:67016295-67016314 | Msa0697020:intron | 50.0% | |
| TAGGAACGTTGATGCCAACC+TGG | - | chr4_4:67016312-67016331 | None:intergenic | 50.0% | |
| TTAAATACATTGGGGGGGGG+GGG | + | chr4_4:67016463-67016482 | Msa0697020:intron | 50.0% | |
| CAGCAGTGGAAGGATTCAGT+TGG | + | chr4_4:67016769-67016788 | Msa0697020:CDS | 50.0% | |
| CTGACTCAGCTTCTCGTGTC+TGG | + | chr4_4:67012138-67012157 | Msa0697020:five_prime_UTR | 55.0% | |
| CGATGATCGTGTATCTGGGC+TGG | - | chr4_4:67012314-67012333 | None:intergenic | 55.0% | |
| AGCCGCTGTTGAGAAATGGG+AGG | - | chr4_4:67012414-67012433 | None:intergenic | 55.0% | |
| !! | GAGGTGGTGGAACATGCTTG+TGG | + | chr4_4:67013100-67013119 | Msa0697020:intron | 55.0% |
| GCCACGGGAAACATCCACAA+TGG | - | chr4_4:67013250-67013269 | None:intergenic | 55.0% | |
| ! | GCAGAATTGGCACTGGAAGC+TGG | + | chr4_4:67013557-67013576 | Msa0697020:CDS | 55.0% |
| !! | ACTGGAAGCTGGTTTGCCTG+AGG | + | chr4_4:67013568-67013587 | Msa0697020:CDS | 55.0% |
| !! | CTGGAAGCTGGTTTGCCTGA+GGG | + | chr4_4:67013569-67013588 | Msa0697020:CDS | 55.0% |
| !!! | CTGCTGGTTTTGGAGCTGCT+GGG | + | chr4_4:67014366-67014385 | Msa0697020:CDS | 55.0% |
| !!! | GTTTTGGAGCTGCTGGGCAA+AGG | + | chr4_4:67014372-67014391 | Msa0697020:CDS | 55.0% |
| !! | CTTACCGGCTTCACAGGCAA+AGG | + | chr4_4:67015014-67015033 | Msa0697020:intron | 55.0% |
| ! | GTTCAATCTGGGGTCGACAG+TGG | + | chr4_4:67015054-67015073 | Msa0697020:CDS | 55.0% |
| GGTGCCAGACTACTGCTTGA+TGG | + | chr4_4:67015075-67015094 | Msa0697020:CDS | 55.0% | |
| ! | TGCCGACATGGAGTGCTACA+AGG | + | chr4_4:67015608-67015627 | Msa0697020:CDS | 55.0% |
| ! | GGCAACAAGGCGTCATTTGC+TGG | + | chr4_4:67016364-67016383 | Msa0697020:intron | 55.0% |
| TAAATACATTGGGGGGGGGG+GGG | + | chr4_4:67016464-67016483 | Msa0697020:intron | 55.0% | |
| ACACGTTGGCGCGTCGTAAC+TGG | - | chr4_4:67012729-67012748 | None:intergenic | 60.0% | |
| !!! | GCTGCTGGTTTTGGAGCTGC+TGG | + | chr4_4:67014365-67014384 | Msa0697020:CDS | 60.0% |
| ! | AGCTGCTGGGCAAAGGTGCA+TGG | + | chr4_4:67014379-67014398 | Msa0697020:CDS | 60.0% |
| CGCTCCTTTGCCTGTGAAGC+CGG | - | chr4_4:67015021-67015040 | None:intergenic | 60.0% | |
| GACTGAGATTGAGGCTGGGC+AGG | + | chr4_4:67016076-67016095 | Msa0697020:CDS | 60.0% | |
| CGTTGATGCCAACCTGGTCC+AGG | - | chr4_4:67016306-67016325 | None:intergenic | 60.0% | |
| AAATACATTGGGGGGGGGGG+GGG | + | chr4_4:67016465-67016484 | Msa0697020:intron | 60.0% | |
| AATACATTGGGGGGGGGGGG+GGG | + | chr4_4:67016466-67016485 | Msa0697020:intron | 65.0% | |
| ATACATTGGGGGGGGGGGGG+GGG | + | chr4_4:67016467-67016486 | Msa0697020:intron | 70.0% | |
| TACATTGGGGGGGGGGGGGG+GGG | + | chr4_4:67016468-67016487 | Msa0697020:intron | 75.0% | |
| ! | ACATTGGGGGGGGGGGGGGG+GGG | + | chr4_4:67016469-67016488 | Msa0697020:intron | 80.0% |
| ! | CATTGGGGGGGGGGGGGGGG+GGG | + | chr4_4:67016470-67016489 | Msa0697020:intron | 85.0% |
| ! | ATTGGGGGGGGGGGGGGGGG+GGG | + | chr4_4:67016471-67016490 | Msa0697020:intron | 85.0% |
| ! | TTGGGGGGGGGGGGGGGGGG+GGG | + | chr4_4:67016472-67016491 | Msa0697020:intron | 90.0% |
| ! | TGGGGGGGGGGGGGGGGGGG+GGG | + | chr4_4:67016473-67016492 | Msa0697020:intron | 95.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 67011944 | 67017025 | 67011944 | ID=Msa0697020;Name=Msa0697020 |
| chr4_4 | mRNA | 67011944 | 67017025 | 67011944 | ID=Msa0697020-mRNA-1;Parent=Msa0697020;Name=Msa0697020-mRNA-1;_AED=0.13;_eAED=0.13;_QI=300|0.87|0.94|1|1|1|17|188|530 |
| chr4_4 | exon | 67011944 | 67012268 | 67011944 | ID=Msa0697020-mRNA-1:exon:19552;Parent=Msa0697020-mRNA-1 |
| chr4_4 | exon | 67012366 | 67012532 | 67012366 | ID=Msa0697020-mRNA-1:exon:19553;Parent=Msa0697020-mRNA-1 |
| chr4_4 | exon | 67012624 | 67012785 | 67012624 | ID=Msa0697020-mRNA-1:exon:19554;Parent=Msa0697020-mRNA-1 |
| chr4_4 | exon | 67012914 | 67012992 | 67012914 | ID=Msa0697020-mRNA-1:exon:19555;Parent=Msa0697020-mRNA-1 |
| chr4_4 | exon | 67013101 | 67013319 | 67013101 | ID=Msa0697020-mRNA-1:exon:19556;Parent=Msa0697020-mRNA-1 |
| chr4_4 | exon | 67013540 | 67013619 | 67013540 | ID=Msa0697020-mRNA-1:exon:19557;Parent=Msa0697020-mRNA-1 |
| chr4_4 | exon | 67013849 | 67013914 | 67013849 | ID=Msa0697020-mRNA-1:exon:19558;Parent=Msa0697020-mRNA-1 |
| chr4_4 | exon | 67014149 | 67014199 | 67014149 | ID=Msa0697020-mRNA-1:exon:19559;Parent=Msa0697020-mRNA-1 |
| chr4_4 | exon | 67014290 | 67014441 | 67014290 | ID=Msa0697020-mRNA-1:exon:19560;Parent=Msa0697020-mRNA-1 |
| chr4_4 | exon | 67014824 | 67014914 | 67014824 | ID=Msa0697020-mRNA-1:exon:19561;Parent=Msa0697020-mRNA-1 |
| chr4_4 | exon | 67015030 | 67015110 | 67015030 | ID=Msa0697020-mRNA-1:exon:19562;Parent=Msa0697020-mRNA-1 |
| chr4_4 | exon | 67015552 | 67015629 | 67015552 | ID=Msa0697020-mRNA-1:exon:19563;Parent=Msa0697020-mRNA-1 |
| chr4_4 | exon | 67015743 | 67015778 | 67015743 | ID=Msa0697020-mRNA-1:exon:19564;Parent=Msa0697020-mRNA-1 |
| chr4_4 | exon | 67015893 | 67015936 | 67015893 | ID=Msa0697020-mRNA-1:exon:19565;Parent=Msa0697020-mRNA-1 |
| chr4_4 | exon | 67016019 | 67016097 | 67016019 | ID=Msa0697020-mRNA-1:exon:19566;Parent=Msa0697020-mRNA-1 |
| chr4_4 | exon | 67016243 | 67016312 | 67016243 | ID=Msa0697020-mRNA-1:exon:19567;Parent=Msa0697020-mRNA-1 |
| chr4_4 | exon | 67016725 | 67017025 | 67016725 | ID=Msa0697020-mRNA-1:exon:19568;Parent=Msa0697020-mRNA-1 |
| chr4_4 | five_prime_UTR | 67011944 | 67012243 | 67011944 | ID=Msa0697020-mRNA-1:five_prime_utr;Parent=Msa0697020-mRNA-1 |
| chr4_4 | CDS | 67012244 | 67012268 | 67012244 | ID=Msa0697020-mRNA-1:cds;Parent=Msa0697020-mRNA-1 |
| chr4_4 | CDS | 67012366 | 67012532 | 67012366 | ID=Msa0697020-mRNA-1:cds;Parent=Msa0697020-mRNA-1 |
| chr4_4 | CDS | 67012624 | 67012785 | 67012624 | ID=Msa0697020-mRNA-1:cds;Parent=Msa0697020-mRNA-1 |
| chr4_4 | CDS | 67012914 | 67012992 | 67012914 | ID=Msa0697020-mRNA-1:cds;Parent=Msa0697020-mRNA-1 |
| chr4_4 | CDS | 67013101 | 67013319 | 67013101 | ID=Msa0697020-mRNA-1:cds;Parent=Msa0697020-mRNA-1 |
| chr4_4 | CDS | 67013540 | 67013619 | 67013540 | ID=Msa0697020-mRNA-1:cds;Parent=Msa0697020-mRNA-1 |
| chr4_4 | CDS | 67013849 | 67013914 | 67013849 | ID=Msa0697020-mRNA-1:cds;Parent=Msa0697020-mRNA-1 |
| chr4_4 | CDS | 67014149 | 67014199 | 67014149 | ID=Msa0697020-mRNA-1:cds;Parent=Msa0697020-mRNA-1 |
| chr4_4 | CDS | 67014290 | 67014441 | 67014290 | ID=Msa0697020-mRNA-1:cds;Parent=Msa0697020-mRNA-1 |
| chr4_4 | CDS | 67014824 | 67014914 | 67014824 | ID=Msa0697020-mRNA-1:cds;Parent=Msa0697020-mRNA-1 |
| chr4_4 | CDS | 67015030 | 67015110 | 67015030 | ID=Msa0697020-mRNA-1:cds;Parent=Msa0697020-mRNA-1 |
| chr4_4 | CDS | 67015552 | 67015629 | 67015552 | ID=Msa0697020-mRNA-1:cds;Parent=Msa0697020-mRNA-1 |
| chr4_4 | CDS | 67015743 | 67015778 | 67015743 | ID=Msa0697020-mRNA-1:cds;Parent=Msa0697020-mRNA-1 |
| chr4_4 | CDS | 67015893 | 67015936 | 67015893 | ID=Msa0697020-mRNA-1:cds;Parent=Msa0697020-mRNA-1 |
| chr4_4 | CDS | 67016019 | 67016097 | 67016019 | ID=Msa0697020-mRNA-1:cds;Parent=Msa0697020-mRNA-1 |
| chr4_4 | CDS | 67016243 | 67016312 | 67016243 | ID=Msa0697020-mRNA-1:cds;Parent=Msa0697020-mRNA-1 |
| chr4_4 | CDS | 67016725 | 67016837 | 67016725 | ID=Msa0697020-mRNA-1:cds;Parent=Msa0697020-mRNA-1 |
| chr4_4 | three_prime_UTR | 67016838 | 67017025 | 67016838 | ID=Msa0697020-mRNA-1:three_prime_utr;Parent=Msa0697020-mRNA-1 |
| Gene Sequence |
| Protein sequence |
