AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1128290

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1128290 MtrunA17_Chr7g0271861 82.639 144 10 1 1 144 1 129 9.28e-83 239
Msa1128290 MtrunA17_Chr4g0068031 46.457 127 54 4 21 144 29 144 2.17e-25 94.4
Msa1128290 MtrunA17_Chr1g0213161 54.348 46 20 1 14 59 145 189 2.20e-13 64.7
Msa1128290 MtrunA17_Chr1g0151461 72.222 36 10 0 22 57 187 222 3.46e-13 65.1
Msa1128290 MtrunA17_Chr2g0326771 57.778 45 19 0 13 57 207 251 7.48e-13 64.3
Msa1128290 MtrunA17_Chr5g0404131 60.526 38 15 0 18 55 188 225 3.97e-12 62.0
Msa1128290 MtrunA17_Chr4g0071301 80.000 30 6 0 22 51 192 221 4.17e-12 62.0
Msa1128290 MtrunA17_Chr8g0373231 62.162 37 14 0 19 55 122 158 4.58e-12 61.2
Msa1128290 MtrunA17_Chr2g0299081 76.667 30 7 0 22 51 169 198 8.39e-12 61.2
Msa1128290 MtrunA17_Chr1g0146231 70.588 34 10 0 24 57 236 269 3.24e-11 59.7
Msa1128290 MtrunA17_Chr4g0028961 49.091 55 27 1 3 57 214 267 3.42e-11 59.7
Msa1128290 MtrunA17_Chr1g0199671 67.647 34 11 0 24 57 244 277 7.94e-11 58.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1128290 AT5G49300.1 50.000 124 43 2 21 144 35 139 2.62e-29 104
Msa1128290 AT3G06740.1 46.923 130 43 4 21 144 40 149 6.46e-28 101
Msa1128290 AT3G16870.1 38.667 150 66 3 21 144 41 190 6.03e-19 79.3
Msa1128290 AT5G56860.1 78.947 38 7 1 18 55 227 263 2.81e-14 68.9
Msa1128290 AT4G16141.1 72.973 37 10 0 21 57 36 72 9.90e-14 65.5
Msa1128290 AT4G26150.1 75.758 33 8 0 20 52 197 229 4.58e-13 65.5
Msa1128290 AT4G36620.1 39.726 73 29 1 18 90 71 128 1.13e-12 63.2
Msa1128290 AT5G26930.1 40.000 120 43 4 15 134 20 110 1.15e-12 61.2
Msa1128290 AT1G08010.2 65.000 40 13 1 18 57 217 255 1.44e-12 63.5
Msa1128290 AT1G08010.1 65.000 40 13 1 18 57 217 255 1.44e-12 63.5
Msa1128290 AT1G08010.3 65.000 40 13 1 18 57 217 255 1.44e-12 63.5
Msa1128290 AT2G18380.1 52.941 51 21 1 8 55 75 125 2.46e-12 62.0
Msa1128290 AT3G50870.1 54.167 48 20 1 19 64 149 196 8.07e-12 61.6
Msa1128290 AT3G45170.1 64.103 39 14 0 16 54 109 147 7.04e-11 58.2
Msa1128290 AT5G25830.1 53.061 49 23 0 9 57 206 254 9.20e-11 58.9

Find 66 sgRNAs with CRISPR-Local

Find 173 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGAGAGAAAGAGAGAGAAAA+TGG 0.255654 7_3:-80157373 None:intergenic
TCACAACACTGAAACAATAA+TGG 0.274232 7_3:-80157496 None:intergenic
ACTTAGTTCCAAATCTTGTT+AGG 0.278264 7_3:+80158526 Msa1128290:three_prime_UTR
CCCTAGTCCCTAACAAGATT+TGG 0.304180 7_3:-80158534 None:intergenic
TCCTCTCCAAAGTGGTGTTT+TGG 0.317787 7_3:-80157727 None:intergenic
AATGATACCTTGGGTCCATT+TGG 0.368205 7_3:-80157753 None:intergenic
TTTCGTTTCGGTGTGTGATT+CGG 0.397003 7_3:+80157427 Msa1128290:five_prime_UTR
ACAAGAAAGGGAAAGGGAAA+GGG 0.399518 7_3:+80158087 Msa1128290:CDS
CACAACACTGAAACAATAAT+GGG 0.400210 7_3:-80157495 None:intergenic
AATGGGAATCATGGATCAAA+TGG 0.411033 7_3:+80157523 Msa1128290:exon
ATGTTGTTCATACGATGAAA+TGG 0.428480 7_3:+80157668 Msa1128290:CDS
AGGGAAAGGAAGAGAGAGAA+AGG 0.432833 7_3:+80158106 Msa1128290:CDS
CTTAGTTCCAAATCTTGTTA+GGG 0.440631 7_3:+80158527 Msa1128290:three_prime_UTR
GCACAGAATGGGAATGGGAG+GGG 0.445124 7_3:+80158130 Msa1128290:CDS
TGTGCAACGCTTGTGGAATC+AGG 0.447660 7_3:+80158032 Msa1128290:CDS
GAAAATGAAGTTAGTGGCAT+TGG 0.448903 7_3:+80158204 Msa1128290:CDS
AAAGGGAAAGGGAAAGGGAA+AGG 0.449906 7_3:+80158092 Msa1128290:CDS
TCCAAATCTTGTTAGGGACT+AGG 0.460368 7_3:+80158533 Msa1128290:three_prime_UTR
TTTCAGTGTTGTGAATCAAA+TGG 0.461831 7_3:+80157505 Msa1128290:exon
AATATTAAAATGTTAGAAGA+AGG 0.462964 7_3:+80158347 Msa1128290:three_prime_UTR
AGTAGAAACAAGTTTCGTTT+CGG 0.463442 7_3:+80157415 Msa1128290:five_prime_UTR
GACAAGAAAGGGAAAGGGAA+AGG 0.465040 7_3:+80158086 Msa1128290:CDS
CCAAATCTTGTTAGGGACTA+GGG 0.469956 7_3:+80158534 Msa1128290:three_prime_UTR
GAGAGAAAGGTGCACAGAAT+GGG 0.472351 7_3:+80158119 Msa1128290:CDS
ACTGAAACAATAATGGGTTA+AGG 0.476837 7_3:-80157489 None:intergenic
AATCATGGATCAAATGGATA+AGG 0.481862 7_3:+80157529 Msa1128290:CDS
AGAGAGAAAGGTGCACAGAA+TGG 0.485338 7_3:+80158118 Msa1128290:CDS
AAAATGAAGTTAGTGGCATT+GGG 0.487144 7_3:+80158205 Msa1128290:CDS
GTGTTTGAAAATGAAGTTAG+TGG 0.497670 7_3:+80158198 Msa1128290:CDS
AAAGGTGCACAGAATGGGAA+TGG 0.500630 7_3:+80158124 Msa1128290:CDS
TGTTGCAGAAGAAACAAAGA+AGG 0.501168 7_3:+80158239 Msa1128290:CDS
CTTTGGAGAGGAGGACCAAA+TGG 0.503109 7_3:+80157738 Msa1128290:CDS
TTCAGTGTTGTGAATCAAAT+GGG 0.509228 7_3:+80157506 Msa1128290:exon
TGTGAATCAAATGGGAATCA+TGG 0.514991 7_3:+80157514 Msa1128290:exon
TGTTTGATGGCACTCTCTTG+TGG 0.524330 7_3:+80158295 Msa1128290:CDS
ATATTAAAATGTTAGAAGAA+GGG 0.525100 7_3:+80158348 Msa1128290:three_prime_UTR
TATTAAAATGTTAGAAGAAG+GGG 0.528171 7_3:+80158349 Msa1128290:three_prime_UTR
TTGTAGCAAAGGACAAGAAA+GGG 0.531317 7_3:+80158075 Msa1128290:CDS
AAACCACCAAAACACCACTT+TGG 0.542523 7_3:+80157721 Msa1128290:CDS
ACAAGCTGCTGTGTGTTTGA+TGG 0.545240 7_3:+80158282 Msa1128290:CDS
ATTAAAATGTTAGAAGAAGG+GGG 0.547323 7_3:+80158350 Msa1128290:three_prime_UTR
GTTGTAGCAAAGGACAAGAA+AGG 0.552771 7_3:+80158074 Msa1128290:CDS
CAAAGGACAAGAAAGGGAAA+GGG 0.557048 7_3:+80158081 Msa1128290:CDS
TAAATATGAACGATACGAAA+CGG 0.558626 7_3:-80157456 None:intergenic
TGTTGTTCATACGATGAAAT+GGG 0.559954 7_3:+80157669 Msa1128290:CDS
GCAAAGGACAAGAAAGGGAA+AGG 0.569001 7_3:+80158080 Msa1128290:CDS
AAGGATTAAACTAGGTGAAG+AGG 0.572329 7_3:+80158258 Msa1128290:CDS
AAGGTGCACAGAATGGGAAT+GGG 0.575912 7_3:+80158125 Msa1128290:CDS
AATCAGGTACAGAAAGAGAA+GGG 0.588011 7_3:+80158048 Msa1128290:CDS
AGAAGGGGTTGTTGTAGCAA+AGG 0.588421 7_3:+80158064 Msa1128290:CDS
TTAAAATGTTAGAAGAAGGG+GGG 0.591566 7_3:+80158351 Msa1128290:three_prime_UTR
GTGCACAGAATGGGAATGGG+AGG 0.593014 7_3:+80158128 Msa1128290:CDS
TAAAATGTTAGAAGAAGGGG+GGG 0.596898 7_3:+80158352 Msa1128290:three_prime_UTR
CAGAATGGGAATGGGAGGGG+TGG 0.600363 7_3:+80158133 Msa1128290:CDS
TAGACGTTGTGCAACGCTTG+TGG 0.606961 7_3:+80158025 Msa1128290:intron
TGCACAGAATGGGAATGGGA+GGG 0.611263 7_3:+80158129 Msa1128290:CDS
AAACAAAGAAGGATTAAACT+AGG 0.611388 7_3:+80158250 Msa1128290:CDS
GGTGGTACTAGCAGTAGCAG+TGG 0.618851 7_3:+80158151 Msa1128290:CDS
GAATCAGGTACAGAAAGAGA+AGG 0.619622 7_3:+80158047 Msa1128290:CDS
TTTGGTCCTCCTCTCCAAAG+TGG 0.621363 7_3:-80157735 None:intergenic
AAAACACCACTTTGGAGAGG+AGG 0.625709 7_3:+80157729 Msa1128290:CDS
AGGAGGACCAAATGGACCCA+AGG 0.633971 7_3:+80157746 Msa1128290:CDS
TTGTTAGGGACTAGGGAGTG+AGG 0.653298 7_3:+80158541 Msa1128290:three_prime_UTR
TTAGGGACTAGGGAGTGAGG+TGG 0.666308 7_3:+80158544 Msa1128290:three_prime_UTR
ACCAAAACACCACTTTGGAG+AGG 0.669357 7_3:+80157726 Msa1128290:CDS
ATCAGGTACAGAAAGAGAAG+GGG 0.680743 7_3:+80158049 Msa1128290:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATGTTTATTAATTTGATTAA+AGG + chr7_3:80157937-80157956 Msa1128290:intron 10.0%
!!! TGTTTATTAATTTGATTAAA+GGG + chr7_3:80157938-80157957 Msa1128290:intron 10.0%
!!! ATGTTTATTAATTTGATTAA+AGG + chr7_3:80157937-80157956 Msa1128290:intron 10.0%
!!! TGTTTATTAATTTGATTAAA+GGG + chr7_3:80157938-80157957 Msa1128290:intron 10.0%
!! AAAAAAAAAAATGATACCTT+GGG - chr7_3:80157765-80157784 None:intergenic 15.0%
!! AAAAAAAAAAAATGATACCT+TGG - chr7_3:80157766-80157785 None:intergenic 15.0%
!!! GTTTTCAAATATAGATAAAA+TGG - chr7_3:80157845-80157864 None:intergenic 15.0%
!! AAGTGAATAATATATCAAAT+TGG - chr7_3:80157873-80157892 None:intergenic 15.0%
!! AAACAATAATCATATCAAAA+AGG - chr7_3:80157902-80157921 None:intergenic 15.0%
!!! TGATTTTTTTTTGTTTTTGT+TGG + chr7_3:80157996-80158015 Msa1128290:intron 15.0%
!!! GATTTTTTTTTGTTTTTGTT+GGG + chr7_3:80157997-80158016 Msa1128290:intron 15.0%
!! AATATTAAAATGTTAGAAGA+AGG + chr7_3:80158347-80158366 Msa1128290:three_prime_UTR 15.0%
!! ATATTAAAATGTTAGAAGAA+GGG + chr7_3:80158348-80158367 Msa1128290:three_prime_UTR 15.0%
!! AAAAAAAAAAATGATACCTT+GGG - chr7_3:80157765-80157784 None:intergenic 15.0%
!! AAAAAAAAAAAATGATACCT+TGG - chr7_3:80157766-80157785 None:intergenic 15.0%
!!! GTTTTCAAATATAGATAAAA+TGG - chr7_3:80157845-80157864 None:intergenic 15.0%
!! AAGTGAATAATATATCAAAT+TGG - chr7_3:80157873-80157892 None:intergenic 15.0%
!! AAACAATAATCATATCAAAA+AGG - chr7_3:80157902-80157921 None:intergenic 15.0%
!!! TGATTTTTTTTTGTTTTTGT+TGG + chr7_3:80157996-80158015 Msa1128290:intron 15.0%
!!! GATTTTTTTTTGTTTTTGTT+GGG + chr7_3:80157997-80158016 Msa1128290:intron 15.0%
!! AATATTAAAATGTTAGAAGA+AGG + chr7_3:80158347-80158366 Msa1128290:three_prime_UTR 15.0%
!! ATATTAAAATGTTAGAAGAA+GGG + chr7_3:80158348-80158367 Msa1128290:three_prime_UTR 15.0%
!! AAGTTACAAAATGATGAAAT+GGG - chr7_3:80157796-80157815 None:intergenic 20.0%
!! TAAGTTACAAAATGATGAAA+TGG - chr7_3:80157797-80157816 None:intergenic 20.0%
!! TGAATAATATATCAAATTGG+TGG - chr7_3:80157870-80157889 None:intergenic 20.0%
!! TATTAAAATGTTAGAAGAAG+GGG + chr7_3:80158349-80158368 Msa1128290:three_prime_UTR 20.0%
!!! CTTTCTTTAGTTTTTAGAAA+GGG + chr7_3:80158491-80158510 Msa1128290:three_prime_UTR 20.0%
!! AAGTTACAAAATGATGAAAT+GGG - chr7_3:80157796-80157815 None:intergenic 20.0%
!! TAAGTTACAAAATGATGAAA+TGG - chr7_3:80157797-80157816 None:intergenic 20.0%
!! TGAATAATATATCAAATTGG+TGG - chr7_3:80157870-80157889 None:intergenic 20.0%
!! TATTAAAATGTTAGAAGAAG+GGG + chr7_3:80158349-80158368 Msa1128290:three_prime_UTR 20.0%
!!! CTTTCTTTAGTTTTTAGAAA+GGG + chr7_3:80158491-80158510 Msa1128290:three_prime_UTR 20.0%
! TAAATATGAACGATACGAAA+CGG - chr7_3:80157459-80157478 None:intergenic 25.0%
! CTTCTTTCTATTTGTTTAAC+AGG + chr7_3:80157644-80157663 Msa1128290:intron 25.0%
! AGATAAAATGGAAGTGAAAA+AGG - chr7_3:80157833-80157852 None:intergenic 25.0%
! AAACAAAGAAGGATTAAACT+AGG + chr7_3:80158250-80158269 Msa1128290:CDS 25.0%
! ATTAAAATGTTAGAAGAAGG+GGG + chr7_3:80158350-80158369 Msa1128290:three_prime_UTR 25.0%
! AAAGAGAGAAAACAAAAAAG+AGG - chr7_3:80158438-80158457 None:intergenic 25.0%
!!! TTTTGTTTTCTCTCTTTCTT+TGG + chr7_3:80158441-80158460 Msa1128290:three_prime_UTR 25.0%
!! CCTTTCTAAAAACTAAAGAA+AGG - chr7_3:80158493-80158512 None:intergenic 25.0%
!!! CCTTTCTTTAGTTTTTAGAA+AGG + chr7_3:80158490-80158509 Msa1128290:three_prime_UTR 25.0%
! TAAATATGAACGATACGAAA+CGG - chr7_3:80157459-80157478 None:intergenic 25.0%
! CTTCTTTCTATTTGTTTAAC+AGG + chr7_3:80157644-80157663 Msa1128290:intron 25.0%
! AGATAAAATGGAAGTGAAAA+AGG - chr7_3:80157833-80157852 None:intergenic 25.0%
! AAACAAAGAAGGATTAAACT+AGG + chr7_3:80158250-80158269 Msa1128290:CDS 25.0%
! ATTAAAATGTTAGAAGAAGG+GGG + chr7_3:80158350-80158369 Msa1128290:three_prime_UTR 25.0%
! AAAGAGAGAAAACAAAAAAG+AGG - chr7_3:80158438-80158457 None:intergenic 25.0%
!!! TTTTGTTTTCTCTCTTTCTT+TGG + chr7_3:80158441-80158460 Msa1128290:three_prime_UTR 25.0%
!! CCTTTCTAAAAACTAAAGAA+AGG - chr7_3:80158493-80158512 None:intergenic 25.0%
!!! CCTTTCTTTAGTTTTTAGAA+AGG + chr7_3:80158490-80158509 Msa1128290:three_prime_UTR 25.0%
AGTAGAAACAAGTTTCGTTT+CGG + chr7_3:80157415-80157434 Msa1128290:five_prime_UTR 30.0%
!! ACTGAAACAATAATGGGTTA+AGG - chr7_3:80157492-80157511 None:intergenic 30.0%
CACAACACTGAAACAATAAT+GGG - chr7_3:80157498-80157517 None:intergenic 30.0%
TCACAACACTGAAACAATAA+TGG - chr7_3:80157499-80157518 None:intergenic 30.0%
TTTCAGTGTTGTGAATCAAA+TGG + chr7_3:80157505-80157524 Msa1128290:exon 30.0%
TTCAGTGTTGTGAATCAAAT+GGG + chr7_3:80157506-80157525 Msa1128290:exon 30.0%
AATCATGGATCAAATGGATA+AGG + chr7_3:80157529-80157548 Msa1128290:CDS 30.0%
ATGTTGTTCATACGATGAAA+TGG + chr7_3:80157668-80157687 Msa1128290:CDS 30.0%
TGTTGTTCATACGATGAAAT+GGG + chr7_3:80157669-80157688 Msa1128290:CDS 30.0%
GTGTTTGAAAATGAAGTTAG+TGG + chr7_3:80158198-80158217 Msa1128290:CDS 30.0%
AAAATGAAGTTAGTGGCATT+GGG + chr7_3:80158205-80158224 Msa1128290:CDS 30.0%
TTAAAATGTTAGAAGAAGGG+GGG + chr7_3:80158351-80158370 Msa1128290:three_prime_UTR 30.0%
ACTTAGTTCCAAATCTTGTT+AGG + chr7_3:80158526-80158545 Msa1128290:three_prime_UTR 30.0%
CTTAGTTCCAAATCTTGTTA+GGG + chr7_3:80158527-80158546 Msa1128290:three_prime_UTR 30.0%
AGTAGAAACAAGTTTCGTTT+CGG + chr7_3:80157415-80157434 Msa1128290:five_prime_UTR 30.0%
!! ACTGAAACAATAATGGGTTA+AGG - chr7_3:80157492-80157511 None:intergenic 30.0%
CACAACACTGAAACAATAAT+GGG - chr7_3:80157498-80157517 None:intergenic 30.0%
TCACAACACTGAAACAATAA+TGG - chr7_3:80157499-80157518 None:intergenic 30.0%
TTTCAGTGTTGTGAATCAAA+TGG + chr7_3:80157505-80157524 Msa1128290:exon 30.0%
TTCAGTGTTGTGAATCAAAT+GGG + chr7_3:80157506-80157525 Msa1128290:exon 30.0%
AATCATGGATCAAATGGATA+AGG + chr7_3:80157529-80157548 Msa1128290:CDS 30.0%
ATGTTGTTCATACGATGAAA+TGG + chr7_3:80157668-80157687 Msa1128290:CDS 30.0%
TGTTGTTCATACGATGAAAT+GGG + chr7_3:80157669-80157688 Msa1128290:CDS 30.0%
GTGTTTGAAAATGAAGTTAG+TGG + chr7_3:80158198-80158217 Msa1128290:CDS 30.0%
AAAATGAAGTTAGTGGCATT+GGG + chr7_3:80158205-80158224 Msa1128290:CDS 30.0%
TTAAAATGTTAGAAGAAGGG+GGG + chr7_3:80158351-80158370 Msa1128290:three_prime_UTR 30.0%
ACTTAGTTCCAAATCTTGTT+AGG + chr7_3:80158526-80158545 Msa1128290:three_prime_UTR 30.0%
CTTAGTTCCAAATCTTGTTA+GGG + chr7_3:80158527-80158546 Msa1128290:three_prime_UTR 30.0%
TGTGAATCAAATGGGAATCA+TGG + chr7_3:80157514-80157533 Msa1128290:exon 35.0%
AATGGGAATCATGGATCAAA+TGG + chr7_3:80157523-80157542 Msa1128290:exon 35.0%
TTTCTTTGAGCTAACTAGCT+AGG + chr7_3:80157566-80157585 Msa1128290:intron 35.0%
AATCAGGTACAGAAAGAGAA+GGG + chr7_3:80158048-80158067 Msa1128290:CDS 35.0%
TTGTAGCAAAGGACAAGAAA+GGG + chr7_3:80158075-80158094 Msa1128290:CDS 35.0%
GAAAATGAAGTTAGTGGCAT+TGG + chr7_3:80158204-80158223 Msa1128290:CDS 35.0%
TGTTGCAGAAGAAACAAAGA+AGG + chr7_3:80158239-80158258 Msa1128290:CDS 35.0%
AAGGATTAAACTAGGTGAAG+AGG + chr7_3:80158258-80158277 Msa1128290:CDS 35.0%
TAAAATGTTAGAAGAAGGGG+GGG + chr7_3:80158352-80158371 Msa1128290:three_prime_UTR 35.0%
GAGAGAAAGAGAGAGAAAAT+TGG - chr7_3:80157375-80157394 None:intergenic 35.0%
TGTGAATCAAATGGGAATCA+TGG + chr7_3:80157514-80157533 Msa1128290:exon 35.0%
AATGGGAATCATGGATCAAA+TGG + chr7_3:80157523-80157542 Msa1128290:exon 35.0%
TTTCTTTGAGCTAACTAGCT+AGG + chr7_3:80157566-80157585 Msa1128290:intron 35.0%
AATCAGGTACAGAAAGAGAA+GGG + chr7_3:80158048-80158067 Msa1128290:CDS 35.0%
TTGTAGCAAAGGACAAGAAA+GGG + chr7_3:80158075-80158094 Msa1128290:CDS 35.0%
GAAAATGAAGTTAGTGGCAT+TGG + chr7_3:80158204-80158223 Msa1128290:CDS 35.0%
TGTTGCAGAAGAAACAAAGA+AGG + chr7_3:80158239-80158258 Msa1128290:CDS 35.0%
AAGGATTAAACTAGGTGAAG+AGG + chr7_3:80158258-80158277 Msa1128290:CDS 35.0%
TAAAATGTTAGAAGAAGGGG+GGG + chr7_3:80158352-80158371 Msa1128290:three_prime_UTR 35.0%
! TTTCGTTTCGGTGTGTGATT+CGG + chr7_3:80157427-80157446 Msa1128290:five_prime_UTR 40.0%
AAACCACCAAAACACCACTT+TGG + chr7_3:80157721-80157740 Msa1128290:CDS 40.0%
AATGATACCTTGGGTCCATT+TGG - chr7_3:80157756-80157775 None:intergenic 40.0%
GAATCAGGTACAGAAAGAGA+AGG + chr7_3:80158047-80158066 Msa1128290:CDS 40.0%
ATCAGGTACAGAAAGAGAAG+GGG + chr7_3:80158049-80158068 Msa1128290:CDS 40.0%
GTTGTAGCAAAGGACAAGAA+AGG + chr7_3:80158074-80158093 Msa1128290:CDS 40.0%
CAAAGGACAAGAAAGGGAAA+GGG + chr7_3:80158081-80158100 Msa1128290:CDS 40.0%
ACAAGAAAGGGAAAGGGAAA+GGG + chr7_3:80158087-80158106 Msa1128290:CDS 40.0%
TCCAAATCTTGTTAGGGACT+AGG + chr7_3:80158533-80158552 Msa1128290:three_prime_UTR 40.0%
CCAAATCTTGTTAGGGACTA+GGG + chr7_3:80158534-80158553 Msa1128290:three_prime_UTR 40.0%
! TTTCGTTTCGGTGTGTGATT+CGG + chr7_3:80157427-80157446 Msa1128290:five_prime_UTR 40.0%
AAACCACCAAAACACCACTT+TGG + chr7_3:80157721-80157740 Msa1128290:CDS 40.0%
AATGATACCTTGGGTCCATT+TGG - chr7_3:80157756-80157775 None:intergenic 40.0%
GAATCAGGTACAGAAAGAGA+AGG + chr7_3:80158047-80158066 Msa1128290:CDS 40.0%
ATCAGGTACAGAAAGAGAAG+GGG + chr7_3:80158049-80158068 Msa1128290:CDS 40.0%
GTTGTAGCAAAGGACAAGAA+AGG + chr7_3:80158074-80158093 Msa1128290:CDS 40.0%
CAAAGGACAAGAAAGGGAAA+GGG + chr7_3:80158081-80158100 Msa1128290:CDS 40.0%
ACAAGAAAGGGAAAGGGAAA+GGG + chr7_3:80158087-80158106 Msa1128290:CDS 40.0%
TCCAAATCTTGTTAGGGACT+AGG + chr7_3:80158533-80158552 Msa1128290:three_prime_UTR 40.0%
CCAAATCTTGTTAGGGACTA+GGG + chr7_3:80158534-80158553 Msa1128290:three_prime_UTR 40.0%
!! TCTCCAAAGTGGTGTTTTGG+TGG - chr7_3:80157727-80157746 None:intergenic 45.0%
! ACCAAAACACCACTTTGGAG+AGG + chr7_3:80157726-80157745 Msa1128290:CDS 45.0%
! TCCTCTCCAAAGTGGTGTTT+TGG - chr7_3:80157730-80157749 None:intergenic 45.0%
! AAAACACCACTTTGGAGAGG+AGG + chr7_3:80157729-80157748 Msa1128290:CDS 45.0%
AGAAGGGGTTGTTGTAGCAA+AGG + chr7_3:80158064-80158083 Msa1128290:CDS 45.0%
GCAAAGGACAAGAAAGGGAA+AGG + chr7_3:80158080-80158099 Msa1128290:CDS 45.0%
GACAAGAAAGGGAAAGGGAA+AGG + chr7_3:80158086-80158105 Msa1128290:CDS 45.0%
AAAGGGAAAGGGAAAGGGAA+AGG + chr7_3:80158092-80158111 Msa1128290:CDS 45.0%
AGGGAAAGGAAGAGAGAGAA+AGG + chr7_3:80158106-80158125 Msa1128290:CDS 45.0%
! AGAGAGAAAGGTGCACAGAA+TGG + chr7_3:80158118-80158137 Msa1128290:CDS 45.0%
! GAGAGAAAGGTGCACAGAAT+GGG + chr7_3:80158119-80158138 Msa1128290:CDS 45.0%
! AAAGGTGCACAGAATGGGAA+TGG + chr7_3:80158124-80158143 Msa1128290:CDS 45.0%
AAGGTGCACAGAATGGGAAT+GGG + chr7_3:80158125-80158144 Msa1128290:CDS 45.0%
ACAAGCTGCTGTGTGTTTGA+TGG + chr7_3:80158282-80158301 Msa1128290:CDS 45.0%
! TGTTTGATGGCACTCTCTTG+TGG + chr7_3:80158295-80158314 Msa1128290:CDS 45.0%
CCCTAGTCCCTAACAAGATT+TGG - chr7_3:80158537-80158556 None:intergenic 45.0%
!! TCTCCAAAGTGGTGTTTTGG+TGG - chr7_3:80157727-80157746 None:intergenic 45.0%
! ACCAAAACACCACTTTGGAG+AGG + chr7_3:80157726-80157745 Msa1128290:CDS 45.0%
! TCCTCTCCAAAGTGGTGTTT+TGG - chr7_3:80157730-80157749 None:intergenic 45.0%
! AAAACACCACTTTGGAGAGG+AGG + chr7_3:80157729-80157748 Msa1128290:CDS 45.0%
AGAAGGGGTTGTTGTAGCAA+AGG + chr7_3:80158064-80158083 Msa1128290:CDS 45.0%
GCAAAGGACAAGAAAGGGAA+AGG + chr7_3:80158080-80158099 Msa1128290:CDS 45.0%
GACAAGAAAGGGAAAGGGAA+AGG + chr7_3:80158086-80158105 Msa1128290:CDS 45.0%
AAAGGGAAAGGGAAAGGGAA+AGG + chr7_3:80158092-80158111 Msa1128290:CDS 45.0%
AGGGAAAGGAAGAGAGAGAA+AGG + chr7_3:80158106-80158125 Msa1128290:CDS 45.0%
! AGAGAGAAAGGTGCACAGAA+TGG + chr7_3:80158118-80158137 Msa1128290:CDS 45.0%
! GAGAGAAAGGTGCACAGAAT+GGG + chr7_3:80158119-80158138 Msa1128290:CDS 45.0%
! AAAGGTGCACAGAATGGGAA+TGG + chr7_3:80158124-80158143 Msa1128290:CDS 45.0%
AAGGTGCACAGAATGGGAAT+GGG + chr7_3:80158125-80158144 Msa1128290:CDS 45.0%
ACAAGCTGCTGTGTGTTTGA+TGG + chr7_3:80158282-80158301 Msa1128290:CDS 45.0%
! TGTTTGATGGCACTCTCTTG+TGG + chr7_3:80158295-80158314 Msa1128290:CDS 45.0%
CCCTAGTCCCTAACAAGATT+TGG - chr7_3:80158537-80158556 None:intergenic 45.0%
TTTGGTCCTCCTCTCCAAAG+TGG - chr7_3:80157738-80157757 None:intergenic 50.0%
! CTTTGGAGAGGAGGACCAAA+TGG + chr7_3:80157738-80157757 Msa1128290:CDS 50.0%
TAGACGTTGTGCAACGCTTG+TGG + chr7_3:80158025-80158044 Msa1128290:intron 50.0%
TGTGCAACGCTTGTGGAATC+AGG + chr7_3:80158032-80158051 Msa1128290:CDS 50.0%
TGCACAGAATGGGAATGGGA+GGG + chr7_3:80158129-80158148 Msa1128290:CDS 50.0%
TTGTTAGGGACTAGGGAGTG+AGG + chr7_3:80158541-80158560 Msa1128290:three_prime_UTR 50.0%
TTTGGTCCTCCTCTCCAAAG+TGG - chr7_3:80157738-80157757 None:intergenic 50.0%
! CTTTGGAGAGGAGGACCAAA+TGG + chr7_3:80157738-80157757 Msa1128290:CDS 50.0%
TAGACGTTGTGCAACGCTTG+TGG + chr7_3:80158025-80158044 Msa1128290:intron 50.0%
TGTGCAACGCTTGTGGAATC+AGG + chr7_3:80158032-80158051 Msa1128290:CDS 50.0%
TGCACAGAATGGGAATGGGA+GGG + chr7_3:80158129-80158148 Msa1128290:CDS 50.0%
TTGTTAGGGACTAGGGAGTG+AGG + chr7_3:80158541-80158560 Msa1128290:three_prime_UTR 50.0%
AGGAGGACCAAATGGACCCA+AGG + chr7_3:80157746-80157765 Msa1128290:CDS 55.0%
GTGCACAGAATGGGAATGGG+AGG + chr7_3:80158128-80158147 Msa1128290:CDS 55.0%
GCACAGAATGGGAATGGGAG+GGG + chr7_3:80158130-80158149 Msa1128290:CDS 55.0%
GGTGGTACTAGCAGTAGCAG+TGG + chr7_3:80158151-80158170 Msa1128290:CDS 55.0%
TTAGGGACTAGGGAGTGAGG+TGG + chr7_3:80158544-80158563 Msa1128290:three_prime_UTR 55.0%
AGGAGGACCAAATGGACCCA+AGG + chr7_3:80157746-80157765 Msa1128290:CDS 55.0%
GTGCACAGAATGGGAATGGG+AGG + chr7_3:80158128-80158147 Msa1128290:CDS 55.0%
GCACAGAATGGGAATGGGAG+GGG + chr7_3:80158130-80158149 Msa1128290:CDS 55.0%
GGTGGTACTAGCAGTAGCAG+TGG + chr7_3:80158151-80158170 Msa1128290:CDS 55.0%
TTAGGGACTAGGGAGTGAGG+TGG + chr7_3:80158544-80158563 Msa1128290:three_prime_UTR 55.0%
CAGAATGGGAATGGGAGGGG+TGG + chr7_3:80158133-80158152 Msa1128290:CDS 60.0%
CAGAATGGGAATGGGAGGGG+TGG + chr7_3:80158133-80158152 Msa1128290:CDS 60.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 80157375 80158579 80157375 ID=Msa1128290;Name=Msa1128290
chr7_3 mRNA 80157375 80158579 80157375 ID=Msa1128290-mRNA-1;Parent=Msa1128290;Name=Msa1128290-mRNA-1;_AED=0.00;_eAED=0.00;_QI=149|1|1|1|1|1|3|246|144
chr7_3 exon 80157375 80157550 80157375 ID=Msa1128290-mRNA-1:exon:22783;Parent=Msa1128290-mRNA-1
chr7_3 exon 80157666 80157767 80157666 ID=Msa1128290-mRNA-1:exon:22784;Parent=Msa1128290-mRNA-1
chr7_3 exon 80158028 80158579 80158028 ID=Msa1128290-mRNA-1:exon:22785;Parent=Msa1128290-mRNA-1
chr7_3 five_prime_UTR 80157375 80157523 80157375 ID=Msa1128290-mRNA-1:five_prime_utr;Parent=Msa1128290-mRNA-1
chr7_3 CDS 80157524 80157550 80157524 ID=Msa1128290-mRNA-1:cds;Parent=Msa1128290-mRNA-1
chr7_3 CDS 80157666 80157767 80157666 ID=Msa1128290-mRNA-1:cds;Parent=Msa1128290-mRNA-1
chr7_3 CDS 80158028 80158333 80158028 ID=Msa1128290-mRNA-1:cds;Parent=Msa1128290-mRNA-1
chr7_3 three_prime_UTR 80158334 80158579 80158334 ID=Msa1128290-mRNA-1:three_prime_utr;Parent=Msa1128290-mRNA-1
Gene Sequence

>Msa1128290

ATGGGAATCATGGATCAAATGGATAAGGAATGTTGTTCATACGATGAAATGGGTGTGATCAAGAAATTTTGTTCTGATTGCAAAACCACCAAAACACCACTTTGGAGAGGAGGACCAAATGGACCCAAGACGTTGTGCAACGCTTGTGGAATCAGGTACAGAAAGAGAAGGGGTTGTTGTAGCAAAGGACAAGAAAGGGAAAGGGAAAGGGAAAGGAAGAGAGAGAAAGGTGCACAGAATGGGAATGGGAGGGGTGGTACTAGCAGTAGCAGTGGCAGTGACAATGATGATTTTAGTGAGTGTTTGAAAATGAAGTTAGTGGCATTGGGTGAAGAGTTTTTGTTGCAGAAGAAACAAAGAAGGATTAAACTAGGTGAAGAGGAACAAGCTGCTGTGTGTTTGATGGCACTCTCTTGTGGCTTTGTTTTTGCTTGA
Protein sequence

>Msa1128290

MGIMDQMDKECCSYDEMGVIKKFCSDCKTTKTPLWRGGPNGPKTLCNACGIRYRKRRGCCSKGQERERERERKREKGAQNGNGRGGTSSSSGSDNDDFSECLKMKLVALGEEFLLQKKQRRIKLGEEEQAAVCLMALSCGFVFA*