AlfalfaGEDB | Msa1128290

M. sativa cultivar zhongmu-4 / Msa1128290

KEGG: -
GO: GO:0000976 GO:0000977 GO:0000981 GO:0001012 GO:0001067 GO:0001085 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141
PFAM: PF00320.30

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1128290	XP_003626174.1	82.639	144	10	1	1	144	1	129	1.01e-78	239

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1128290	sp\|Q9FJ10\|GAT16_ARATH	50.000	124	43	2	21	144	35	139	2.58e-28	104

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1128290	G7KWI0	82.639	144	10	1	1	144	1	129	4.82e-79	239

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TFs/TRs:

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Gene ID	Type	Classification
Msa1128290	TF	C2C2-GATA

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa1128290	Msa1165260	0.983565	4.306665e-158	-8.615850e-47
Msa1128290	Msa1385770	0.827684	1.365429e-54	-8.615850e-47
Msa1128290	Msa1409240	0.825089	5.667241e-54	-8.615850e-47
Msa1128290	Msa1434140	0.815629	8.380486e-52	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1128290	MtrunA17_Chr7g0271861	82.639	144	10	1	1	144	1	129	9.28e-83	239
Msa1128290	MtrunA17_Chr4g0068031	46.457	127	54	4	21	144	29	144	2.17e-25	94.4
Msa1128290	MtrunA17_Chr1g0213161	54.348	46	20	1	14	59	145	189	2.20e-13	64.7
Msa1128290	MtrunA17_Chr1g0151461	72.222	36	10	0	22	57	187	222	3.46e-13	65.1
Msa1128290	MtrunA17_Chr2g0326771	57.778	45	19	0	13	57	207	251	7.48e-13	64.3
Msa1128290	MtrunA17_Chr5g0404131	60.526	38	15	0	18	55	188	225	3.97e-12	62.0
Msa1128290	MtrunA17_Chr4g0071301	80.000	30	6	0	22	51	192	221	4.17e-12	62.0
Msa1128290	MtrunA17_Chr8g0373231	62.162	37	14	0	19	55	122	158	4.58e-12	61.2
Msa1128290	MtrunA17_Chr2g0299081	76.667	30	7	0	22	51	169	198	8.39e-12	61.2
Msa1128290	MtrunA17_Chr1g0146231	70.588	34	10	0	24	57	236	269	3.24e-11	59.7

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1128290	AT5G49300.1	50.000	124	43	2	21	144	35	139	2.62e-29	104
Msa1128290	AT3G06740.1	46.923	130	43	4	21	144	40	149	6.46e-28	101
Msa1128290	AT3G16870.1	38.667	150	66	3	21	144	41	190	6.03e-19	79.3
Msa1128290	AT5G56860.1	78.947	38	7	1	18	55	227	263	2.81e-14	68.9
Msa1128290	AT4G16141.1	72.973	37	10	0	21	57	36	72	9.90e-14	65.5
Msa1128290	AT4G26150.1	75.758	33	8	0	20	52	197	229	4.58e-13	65.5
Msa1128290	AT4G36620.1	39.726	73	29	1	18	90	71	128	1.13e-12	63.2
Msa1128290	AT5G26930.1	40.000	120	43	4	15	134	20	110	1.15e-12	61.2
Msa1128290	AT1G08010.2	65.000	40	13	1	18	57	217	255	1.44e-12	63.5
Msa1128290	AT1G08010.1	65.000	40	13	1	18	57	217	255	1.44e-12	63.5

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Find 66 sgRNAs with CRISPR-Local

Find 173 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACACCACTTTGGAGAGG+AGG	0.625709	7_3:+80157729	Msa1128290:CDS
AAAATGAAGTTAGTGGCATT+GGG	0.487144	7_3:+80158205	Msa1128290:CDS
AAACAAAGAAGGATTAAACT+AGG	0.611388	7_3:+80158250	Msa1128290:CDS
AAACCACCAAAACACCACTT+TGG	0.542523	7_3:+80157721	Msa1128290:CDS
AAAGGGAAAGGGAAAGGGAA+AGG	0.449906	7_3:+80158092	Msa1128290:CDS
AAAGGTGCACAGAATGGGAA+TGG	0.500630	7_3:+80158124	Msa1128290:CDS
AAGGATTAAACTAGGTGAAG+AGG	0.572329	7_3:+80158258	Msa1128290:CDS
AAGGTGCACAGAATGGGAAT+GGG	0.575912	7_3:+80158125	Msa1128290:CDS
AATATTAAAATGTTAGAAGA+AGG	0.462964	7_3:+80158347	Msa1128290:three_prime_UTR
AATCAGGTACAGAAAGAGAA+GGG	0.588011	7_3:+80158048	Msa1128290:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AGTAGAAACAAGTTTCGTTT+CGG	+	chr7_3:80157415-80157434	Msa1128290:five_prime_UTR	30.0%
CACAACACTGAAACAATAAT+GGG	-	chr7_3:80157498-80157517	None:intergenic	30.0%
TCACAACACTGAAACAATAA+TGG	-	chr7_3:80157499-80157518	None:intergenic	30.0%
TTTCAGTGTTGTGAATCAAA+TGG	+	chr7_3:80157505-80157524	Msa1128290:exon	30.0%
TTCAGTGTTGTGAATCAAAT+GGG	+	chr7_3:80157506-80157525	Msa1128290:exon	30.0%
AATCATGGATCAAATGGATA+AGG	+	chr7_3:80157529-80157548	Msa1128290:CDS	30.0%
ATGTTGTTCATACGATGAAA+TGG	+	chr7_3:80157668-80157687	Msa1128290:CDS	30.0%
TGTTGTTCATACGATGAAAT+GGG	+	chr7_3:80157669-80157688	Msa1128290:CDS	30.0%
GTGTTTGAAAATGAAGTTAG+TGG	+	chr7_3:80158198-80158217	Msa1128290:CDS	30.0%
AAAATGAAGTTAGTGGCATT+GGG	+	chr7_3:80158205-80158224	Msa1128290:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_3	gene	80157375	80158579	80157375	ID=Msa1128290;Name=Msa1128290
chr7_3	mRNA	80157375	80158579	80157375	ID=Msa1128290-mRNA-1;Parent=Msa1128290;Name=Msa1128290-mRNA-1;_AED=0.00;_eAED=0.00;_QI=149\|1\|1\|1\|1\|1\|3\|246\|144
chr7_3	exon	80157375	80157550	80157375	ID=Msa1128290-mRNA-1:exon:22783;Parent=Msa1128290-mRNA-1
chr7_3	exon	80157666	80157767	80157666	ID=Msa1128290-mRNA-1:exon:22784;Parent=Msa1128290-mRNA-1
chr7_3	exon	80158028	80158579	80158028	ID=Msa1128290-mRNA-1:exon:22785;Parent=Msa1128290-mRNA-1
chr7_3	five_prime_UTR	80157375	80157523	80157375	ID=Msa1128290-mRNA-1:five_prime_utr;Parent=Msa1128290-mRNA-1
chr7_3	CDS	80157524	80157550	80157524	ID=Msa1128290-mRNA-1:cds;Parent=Msa1128290-mRNA-1
chr7_3	CDS	80157666	80157767	80157666	ID=Msa1128290-mRNA-1:cds;Parent=Msa1128290-mRNA-1
chr7_3	CDS	80158028	80158333	80158028	ID=Msa1128290-mRNA-1:cds;Parent=Msa1128290-mRNA-1
chr7_3	three_prime_UTR	80158334	80158579	80158334	ID=Msa1128290-mRNA-1:three_prime_utr;Parent=Msa1128290-mRNA-1

Gene Sequence

>Msa1128290

ATGGGAATCATGGATCAAATGGATAAGGAATGTTGTTCATACGATGAAATGGGTGTGATCAAGAAATTTTGTTCTGATTGCAAAACCACCAAAACACCACTTTGGAGAGGAGGACCAAATGGACCCAAGACGTTGTGCAACGCTTGTGGAATCAGGTACAGAAAGAGAAGGGGTTGTTGTAGCAAAGGACAAGAAAGGGAAAGGGAAAGGGAAAGGAAGAGAGAGAAAGGTGCACAGAATGGGAATGGGAGGGGTGGTACTAGCAGTAGCAGTGGCAGTGACAATGATGATTTTAGTGAGTGTTTGAAAATGAAGTTAGTGGCATTGGGTGAAGAGTTTTTGTTGCAGAAGAAACAAAGAAGGATTAAACTAGGTGAAGAGGAACAAGCTGCTGTGTGTTTGATGGCACTCTCTTGTGGCTTTGTTTTTGCTTGA

Protein sequence

>Msa1128290

MGIMDQMDKECCSYDEMGVIKKFCSDCKTTKTPLWRGGPNGPKTLCNACGIRYRKRRGCCSKGQERERERERKREKGAQNGNGRGGTSSSSGSDNDDFSECLKMKLVALGEEFLLQKKQRRIKLGEEEQAAVCLMALSCGFVFA*