Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1128760 | XP_003626320.1 | 93.434 | 396 | 26 | 0 | 6 | 401 | 2 | 397 | 0.0 | 757 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1128760 | sp|Q96G04|EF2KT_HUMAN | 24.603 | 378 | 214 | 11 | 15 | 389 | 19 | 328 | 3.89e-21 | 96.7 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1128760 | G7KZP5 | 93.434 | 396 | 26 | 0 | 6 | 401 | 2 | 397 | 0.0 | 757 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1128760 | Msa1302830 | 0.821270 | 4.414737e-53 | -8.615850e-47 |
| Msa1128760 | Msa1393890 | 0.972966 | 1.229572e-135 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1128760 | MtrunA17_Chr7g0273091 | 93.434 | 396 | 26 | 0 | 6 | 401 | 2 | 397 | 0.0 | 757 |
| Msa1128760 | MtrunA17_Chr5g0405981 | 34.043 | 141 | 76 | 4 | 144 | 283 | 42 | 166 | 1.51e-11 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1128760 | AT5G27400.1 | 49.091 | 385 | 157 | 6 | 17 | 393 | 14 | 367 | 1.61e-118 | 349 |
| Msa1128760 | AT5G27410.2 | 48.082 | 391 | 162 | 7 | 17 | 399 | 14 | 371 | 3.91e-108 | 339 |
Find 90 sgRNAs with CRISPR-Local
Find 196 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTCCACATCACTTCAAATT+TGG | 0.100481 | 7_3:-80659444 | None:intergenic |
| TCAATACATTACATCATTTA+AGG | 0.119855 | 7_3:+80659980 | Msa1128760:CDS |
| TCCAAACTCCACCGCGATTT+TGG | 0.193139 | 7_3:-80659492 | None:intergenic |
| AACTAACATGAAGTTTAATT+TGG | 0.203591 | 7_3:+80661696 | Msa1128760:CDS |
| GTTTCTGCTTGTTTATTAAT+AGG | 0.259743 | 7_3:+80663087 | Msa1128760:three_prime_UTR |
| ACCAAAATCGCGGTGGAGTT+TGG | 0.270523 | 7_3:+80659491 | Msa1128760:five_prime_UTR |
| GGCTCTGGAGTTGGCTTAGT+TGG | 0.282693 | 7_3:+80661407 | Msa1128760:CDS |
| CCAAAATGTGAACTTGAAAA+TGG | 0.291962 | 7_3:+80662620 | Msa1128760:CDS |
| CTTATATTGCATGTGTTATT+CGG | 0.308249 | 7_3:+80662741 | Msa1128760:CDS |
| AACATGCTTGAAGGTGATAC+TGG | 0.315082 | 7_3:+80660588 | Msa1128760:CDS |
| GAGCATAGAGTTCATAAAAT+TGG | 0.322064 | 7_3:-80659959 | None:intergenic |
| TTCCACATCACTTCAAATTT+GGG | 0.332750 | 7_3:-80659443 | None:intergenic |
| ATCCCTCTCTCCCTTGTTGC+CGG | 0.341195 | 7_3:+80659540 | Msa1128760:CDS |
| TTAAGAAAATTCTTCAAGTA+AGG | 0.361862 | 7_3:-80659891 | None:intergenic |
| TGGTTCAACGTTAGTTATTA+CGG | 0.374301 | 7_3:-80659472 | None:intergenic |
| ACTTTATTAGAAAATAATTC+TGG | 0.375795 | 7_3:-80661110 | None:intergenic |
| AGCTCATGTGAAAGCTTCTA+AGG | 0.381887 | 7_3:+80661439 | Msa1128760:CDS |
| TAAGCCACCGGTGCTTCCTT+TGG | 0.398341 | 7_3:-80662722 | None:intergenic |
| CCACCGGTGCTTCCTTTGGC+TGG | 0.400499 | 7_3:-80662718 | None:intergenic |
| GAGAGAAAGTGTACTTGGAA+TGG | 0.403038 | 7_3:-80659613 | None:intergenic |
| ACAAGATGTGGCAGGCAAAC+TGG | 0.404994 | 7_3:-80662536 | None:intergenic |
| TTGGCTTCAGTGATTCAGTT+AGG | 0.408285 | 7_3:-80662826 | None:intergenic |
| AACAACCTGGATGTTGAAAC+TGG | 0.420207 | 7_3:+80661724 | Msa1128760:CDS |
| GGTTGTGCAGATGCTCAATA+TGG | 0.422705 | 7_3:+80661048 | Msa1128760:intron |
| CTGGCATGATATCTTGTAGT+TGG | 0.423115 | 7_3:-80662335 | None:intergenic |
| TTCTAATAAAGTGTGCTTTG+AGG | 0.425085 | 7_3:+80661121 | Msa1128760:CDS |
| TACTTGAATCCACATTCCTC+TGG | 0.440543 | 7_3:-80662583 | None:intergenic |
| GTCTGATCATGGCTCCGTCT+TGG | 0.441267 | 7_3:+80659935 | Msa1128760:CDS |
| AGAGAAAGTGTACTTGGAAT+GGG | 0.444069 | 7_3:-80659612 | None:intergenic |
| TTCAATTCTCACATAACATC+TGG | 0.449400 | 7_3:-80662354 | None:intergenic |
| TGCTCTATAAACATGCTTGA+AGG | 0.457971 | 7_3:+80660579 | Msa1128760:CDS |
| AAACAGATTGGCTCTGGAGT+TGG | 0.464349 | 7_3:+80661398 | Msa1128760:intron |
| TATTGTAAAGGCACTGATGA+TGG | 0.475537 | 7_3:+80662650 | Msa1128760:CDS |
| CAATTTAGGGCGTGCGGTGA+AGG | 0.476313 | 7_3:+80659707 | Msa1128760:intron |
| AGTTTGAAACAGATTGGCTC+TGG | 0.481295 | 7_3:+80661392 | Msa1128760:intron |
| CATGGCTACGGAGCAAGCAC+TGG | 0.482782 | 7_3:+80659517 | Msa1128760:exon |
| TGATTGTATGACTGCATGTA+AGG | 0.483753 | 7_3:-80662860 | None:intergenic |
| CCGAGCCAGTTTCAACATCC+AGG | 0.484381 | 7_3:-80661729 | None:intergenic |
| TACAAATCAGTTAACAATGA+TGG | 0.490339 | 7_3:+80662686 | Msa1128760:CDS |
| CGCGGTGGAGTTTGGAAGCA+TGG | 0.492947 | 7_3:+80659499 | Msa1128760:exon |
| TCTCTCTGCTATTCTAGCTA+TGG | 0.499916 | 7_3:+80659568 | Msa1128760:CDS |
| AATGGTGAACATTATTGTAA+AGG | 0.506975 | 7_3:+80662638 | Msa1128760:CDS |
| CTTTCTGATGCAGATTCCCA+TGG | 0.513767 | 7_3:-80662312 | None:intergenic |
| GTGCGGTGAAGGCTCAATTA+CGG | 0.514764 | 7_3:+80659718 | Msa1128760:CDS |
| TCATGTTAGTTAAAGTTGAA+AGG | 0.514800 | 7_3:-80661684 | None:intergenic |
| TGTAAAATCATACTACAGTA+AGG | 0.516898 | 7_3:+80662917 | Msa1128760:CDS |
| CCAGGCTAACCTTTGTATTG+AGG | 0.517309 | 7_3:+80662802 | Msa1128760:CDS |
| ATAATTGAAATTTACAGGTG+TGG | 0.525681 | 7_3:-80659777 | None:intergenic |
| ACTCAAGTTGAGTCTGATCA+TGG | 0.531090 | 7_3:+80659924 | Msa1128760:CDS |
| TAAAATGCTTGTATCTGCCA+TGG | 0.533484 | 7_3:+80662295 | Msa1128760:CDS |
| GAGAGAAGATACCGGCAACA+AGG | 0.535615 | 7_3:-80659551 | None:intergenic |
| CCTCAATACAAAGGTTAGCC+TGG | 0.542794 | 7_3:-80662802 | None:intergenic |
| GGCACTGATGATGGATCTGA+GGG | 0.551322 | 7_3:+80662659 | Msa1128760:CDS |
| AGAGAAGATACCGGCAACAA+GGG | 0.556723 | 7_3:-80659550 | None:intergenic |
| GGAGTTTGGAAGCATGGCTA+CGG | 0.557040 | 7_3:+80659505 | Msa1128760:exon |
| ATGTTTATAGAGCACTGTAA+TGG | 0.571157 | 7_3:-80660570 | None:intergenic |
| TGGCCAGCCAAAGGAAGCAC+CGG | 0.574654 | 7_3:+80662715 | Msa1128760:CDS |
| CCAGCCAAAGGAAGCACCGG+TGG | 0.577812 | 7_3:+80662718 | Msa1128760:CDS |
| AGGCACTGATGATGGATCTG+AGG | 0.585302 | 7_3:+80662658 | Msa1128760:CDS |
| CAATCTACTCACGATGTCGA+AGG | 0.588943 | 7_3:-80662956 | None:intergenic |
| TAATTTGGAGTTGAACAACC+TGG | 0.595057 | 7_3:+80661711 | Msa1128760:CDS |
| ACATGCTTGAAGGTGATACT+GGG | 0.604475 | 7_3:+80660589 | Msa1128760:CDS |
| CAGTTAGGTCCTCAATACAA+AGG | 0.605293 | 7_3:-80662811 | None:intergenic |
| AGCCCAAATTTGAAGTGATG+TGG | 0.606078 | 7_3:+80659441 | None:intergenic |
| ATACCGGCAACAAGGGAGAG+AGG | 0.606417 | 7_3:-80659543 | None:intergenic |
| TTCATAAAATTGGTCCAAGA+CGG | 0.608371 | 7_3:-80659949 | None:intergenic |
| CAATTTCAATTTAGGGCGTG+CGG | 0.609491 | 7_3:+80659701 | Msa1128760:intron |
| TACCGGCAACAAGGGAGAGA+GGG | 0.609497 | 7_3:-80659542 | None:intergenic |
| AAAATGCTTGTATCTGCCAT+GGG | 0.613039 | 7_3:+80662296 | Msa1128760:CDS |
| TAACAGGTGATACTAAGTGA+TGG | 0.614593 | 7_3:+80661658 | Msa1128760:intron |
| GAATAGCAGAGAGAAGATAC+CGG | 0.615935 | 7_3:-80659559 | None:intergenic |
| GGAATGGGAGATTAAGCAGT+CGG | 0.618022 | 7_3:-80659597 | None:intergenic |
| CCTGGATGTTGAAACTGGCT+CGG | 0.618820 | 7_3:+80661729 | Msa1128760:CDS |
| GTTAACAATGATGGTTGTGA+TGG | 0.618833 | 7_3:+80662695 | Msa1128760:CDS |
| GTAATTACACGAACAAGATG+TGG | 0.621214 | 7_3:-80662548 | None:intergenic |
| ATGTAAGGGAGGAGAACCAT+TGG | 0.622301 | 7_3:-80662845 | None:intergenic |
| TTACACGAACAAGATGTGGC+AGG | 0.624577 | 7_3:-80662544 | None:intergenic |
| CAGTAAGGTGATAACTTCGA+AGG | 0.625275 | 7_3:+80662932 | Msa1128760:exon |
| AATGTGGATTCAAGTAGCAA+AGG | 0.629953 | 7_3:+80662590 | Msa1128760:CDS |
| TGGGAGATTAAGCAGTCGGA+AGG | 0.635091 | 7_3:-80659593 | None:intergenic |
| AACTGAATCACTGAAGCCAA+TGG | 0.639835 | 7_3:+80662829 | Msa1128760:CDS |
| TTACAGGTGTGGAAAGACAA+TGG | 0.650560 | 7_3:-80659766 | None:intergenic |
| ACACATGCAATATAAGCCAC+CGG | 0.657568 | 7_3:-80662734 | None:intergenic |
| GATTGTATGACTGCATGTAA+GGG | 0.662724 | 7_3:-80662859 | None:intergenic |
| TGGTTGTGATGGCCAGCCAA+AGG | 0.707964 | 7_3:+80662706 | Msa1128760:CDS |
| TGTATGACTGCATGTAAGGG+AGG | 0.709033 | 7_3:-80662856 | None:intergenic |
| TTCAACGTTAGTTATTACGG+CGG | 0.722189 | 7_3:-80659469 | None:intergenic |
| AAGAAATGAAGATACAAGCG+CGG | 0.722268 | 7_3:+80661756 | Msa1128760:CDS |
| ACGTTGAACCAAAATCGCGG+TGG | 0.733012 | 7_3:+80659484 | Msa1128760:five_prime_UTR |
| CTAACGTTGAACCAAAATCG+CGG | 0.752599 | 7_3:+80659481 | Msa1128760:five_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTTATTTTTATTTTTTT+TGG | + | chr7_3:80662406-80662425 | Msa1128760:intron | 0.0% |
| !!! | ATTTTAAATTATAAATAAAT+TGG | + | chr7_3:80663038-80663057 | Msa1128760:three_prime_UTR | 0.0% |
| !!! | ATTTTTTTTAAAAACACAAA+TGG | - | chr7_3:80660411-80660430 | None:intergenic | 10.0% |
| !! | ACAATTATTGGTAAAATTAA+GGG | - | chr7_3:80660294-80660313 | None:intergenic | 15.0% |
| !! | AACAATTATTGGTAAAATTA+AGG | - | chr7_3:80660295-80660314 | None:intergenic | 15.0% |
| !! | ACAATTTGTAAAACAATTAT+TGG | - | chr7_3:80660306-80660325 | None:intergenic | 15.0% |
| !! | ACTTTATTAGAAAATAATTC+TGG | - | chr7_3:80661113-80661132 | None:intergenic | 15.0% |
| !! | TTATTTACAATTTAGCAAAA+TGG | - | chr7_3:80661884-80661903 | None:intergenic | 15.0% |
| !! | TTTATGTTATTATTTCAGTT+TGG | + | chr7_3:80662493-80662512 | Msa1128760:intron | 15.0% |
| !! | TTATGTTATTATTTCAGTTT+GGG | + | chr7_3:80662494-80662513 | Msa1128760:intron | 15.0% |
| !! | AGTTTATGCAATTTCAATTT+AGG | + | chr7_3:80659693-80659712 | Msa1128760:intron | 20.0% |
| !! | GTTTATGCAATTTCAATTTA+GGG | + | chr7_3:80659694-80659713 | Msa1128760:intron | 20.0% |
| !! | AGAAGATAATTGAAATTTAC+AGG | - | chr7_3:80659785-80659804 | None:intergenic | 20.0% |
| !!! | GAAAGATTTTAACAATCATA+TGG | - | chr7_3:80659829-80659848 | None:intergenic | 20.0% |
| !! | TTAAGAAAATTCTTCAAGTA+AGG | - | chr7_3:80659894-80659913 | None:intergenic | 20.0% |
| !! | TCAATACATTACATCATTTA+AGG | + | chr7_3:80659980-80659999 | Msa1128760:CDS | 20.0% |
| !! | CCTATTAGGAAAAAAAAAAA+GGG | - | chr7_3:80660084-80660103 | None:intergenic | 20.0% |
| !! | TCCTATTAGGAAAAAAAAAA+AGG | - | chr7_3:80660085-80660104 | None:intergenic | 20.0% |
| !!! | AATAAAATCACCAAAGATTT+TGG | + | chr7_3:80660439-80660458 | Msa1128760:intron | 20.0% |
| !! | TAATTGTTTGAACATTTGTT+GGG | + | chr7_3:80660908-80660927 | Msa1128760:intron | 20.0% |
| !! | TTTCATTTATTGCACTAAAA+CGG | + | chr7_3:80661328-80661347 | Msa1128760:intron | 20.0% |
| !!! | ATTTTTTATATGCCTGATAT+TGG | + | chr7_3:80661583-80661602 | Msa1128760:intron | 20.0% |
| !!! | TTTTTTATATGCCTGATATT+GGG | + | chr7_3:80661584-80661603 | Msa1128760:intron | 20.0% |
| !! | AACTAACATGAAGTTTAATT+TGG | + | chr7_3:80661696-80661715 | Msa1128760:CDS | 20.0% |
| !! | AATGTCAAAAAGATGAAAAT+TGG | - | chr7_3:80662065-80662084 | None:intergenic | 20.0% |
| !! | TTGTATAAAAATAGTCATTG+AGG | + | chr7_3:80662201-80662220 | Msa1128760:intron | 20.0% |
| ! | ATAAACTAAGCTTAAAATGC+AGG | - | chr7_3:80659680-80659699 | None:intergenic | 25.0% |
| ! | ATAATTGAAATTTACAGGTG+TGG | - | chr7_3:80659780-80659799 | None:intergenic | 25.0% |
| !!! | CCCTTTTTTTTTTTCCTAAT+AGG | + | chr7_3:80660081-80660100 | Msa1128760:intron | 25.0% |
| !! | ATTTCATTTCTTTTTCCTCA+TGG | + | chr7_3:80660145-80660164 | Msa1128760:CDS | 25.0% |
| ! | TCTAATAATGATTTACCATG+AGG | - | chr7_3:80660163-80660182 | None:intergenic | 25.0% |
| !! | TAAAAACACAAATGGTGTTT+TGG | - | chr7_3:80660403-80660422 | None:intergenic | 25.0% |
| ! | CAATACAATTTACCAACAAA+AGG | - | chr7_3:80660499-80660518 | None:intergenic | 25.0% |
| ! | ATTTAGTATACAGCATTTCA+GGG | + | chr7_3:80660645-80660664 | Msa1128760:intron | 25.0% |
| ! | CTAATTGTTTGAACATTTGT+TGG | + | chr7_3:80660907-80660926 | Msa1128760:intron | 25.0% |
| !! | TTGAGGTAAGTTATGTTTTT+AGG | + | chr7_3:80661138-80661157 | Msa1128760:intron | 25.0% |
| ! | TTCATTTATTGCACTAAAAC+GGG | + | chr7_3:80661329-80661348 | Msa1128760:intron | 25.0% |
| ! | TTAAACAGAGTGAGAATTAA+AGG | + | chr7_3:80661543-80661562 | Msa1128760:intron | 25.0% |
| ! | TCATGTTAGTTAAAGTTGAA+AGG | - | chr7_3:80661687-80661706 | None:intergenic | 25.0% |
| ! | TAAAAATCCACAATCATAGT+AGG | - | chr7_3:80662033-80662052 | None:intergenic | 25.0% |
| !! | TATGATTGTGGATTTTTACA+TGG | + | chr7_3:80662035-80662054 | Msa1128760:intron | 25.0% |
| ! | AGATACAGAATTTGAACAAA+AGG | - | chr7_3:80662097-80662116 | None:intergenic | 25.0% |
| ! | ATACTAAAATCAATGATACC+TGG | + | chr7_3:80662137-80662156 | Msa1128760:intron | 25.0% |
| ! | AATGGTGAACATTATTGTAA+AGG | + | chr7_3:80662638-80662657 | Msa1128760:CDS | 25.0% |
| ! | TACAAATCAGTTAACAATGA+TGG | + | chr7_3:80662686-80662705 | Msa1128760:CDS | 25.0% |
| !! | CTTATATTGCATGTGTTATT+CGG | + | chr7_3:80662741-80662760 | Msa1128760:CDS | 25.0% |
| ! | TGTAAAATCATACTACAGTA+AGG | + | chr7_3:80662917-80662936 | Msa1128760:CDS | 25.0% |
| ! | GTGAGTAGATTGAAAAATAT+AGG | + | chr7_3:80662967-80662986 | Msa1128760:three_prime_UTR | 25.0% |
| ! | GTTTCTGCTTGTTTATTAAT+AGG | + | chr7_3:80663087-80663106 | Msa1128760:three_prime_UTR | 25.0% |
| TGGTTCAACGTTAGTTATTA+CGG | - | chr7_3:80659475-80659494 | None:intergenic | 30.0% | |
| TTCATAAAATTGGTCCAAGA+CGG | - | chr7_3:80659952-80659971 | None:intergenic | 30.0% | |
| GAGCATAGAGTTCATAAAAT+TGG | - | chr7_3:80659962-80659981 | None:intergenic | 30.0% | |
| GTCTAAACTATCATCCTATT+AGG | - | chr7_3:80660098-80660117 | None:intergenic | 30.0% | |
| AAACTACCAAAGAAATGGAA+TGG | - | chr7_3:80660216-80660235 | None:intergenic | 30.0% | |
| ! | TCCATTTCTTTGGTAGTTTA+AGG | + | chr7_3:80660217-80660236 | Msa1128760:intron | 30.0% |
| ACCTTAAACTACCAAAGAAA+TGG | - | chr7_3:80660221-80660240 | None:intergenic | 30.0% | |
| AGTATTAATGCTCTTTGCAT+TGG | - | chr7_3:80660335-80660354 | None:intergenic | 30.0% | |
| ! | TGTTGGTAAATTGTATTGCT+AGG | + | chr7_3:80660501-80660520 | Msa1128760:intron | 30.0% |
| !! | ATGTTTATAGAGCACTGTAA+TGG | - | chr7_3:80660573-80660592 | None:intergenic | 30.0% |
| CATTTAGTATACAGCATTTC+AGG | + | chr7_3:80660644-80660663 | Msa1128760:intron | 30.0% | |
| !! | TACCTTCTGAAAGTTAGTTT+TGG | + | chr7_3:80661022-80661041 | Msa1128760:intron | 30.0% |
| AACCAAAACTAACTTTCAGA+AGG | - | chr7_3:80661027-80661046 | None:intergenic | 30.0% | |
| !!! | TCTGAAAGTTAGTTTTGGTT+TGG | + | chr7_3:80661027-80661046 | Msa1128760:intron | 30.0% |
| TTCTAATAAAGTGTGCTTTG+AGG | + | chr7_3:80661121-80661140 | Msa1128760:CDS | 30.0% | |
| GTAAAACGTATTGAACACAA+AGG | + | chr7_3:80661493-80661512 | Msa1128760:intron | 30.0% | |
| !!! | TAGTTCCAGTGTTTTTTAAC+AGG | + | chr7_3:80661642-80661661 | Msa1128760:intron | 30.0% |
| TATCACCTGTTAAAAAACAC+TGG | - | chr7_3:80661650-80661669 | None:intergenic | 30.0% | |
| AATATGGGGATAAGGTTAAA+AGG | - | chr7_3:80661975-80661994 | None:intergenic | 30.0% | |
| ACTACTGACAGTATGAATAT+GGG | - | chr7_3:80661990-80662009 | None:intergenic | 30.0% | |
| AACTACTGACAGTATGAATA+TGG | - | chr7_3:80661991-80662010 | None:intergenic | 30.0% | |
| TCAGTAGTTTATACTCTAGT+GGG | + | chr7_3:80662002-80662021 | Msa1128760:intron | 30.0% | |
| TTCAATTCTCACATAACATC+TGG | - | chr7_3:80662357-80662376 | None:intergenic | 30.0% | |
| ! | TAAACAATGCTTTGTTCAAG+AGG | - | chr7_3:80662387-80662406 | None:intergenic | 30.0% |
| !!! | CCATTTTCAAGTTCACATTT+TGG | - | chr7_3:80662623-80662642 | None:intergenic | 30.0% |
| CCAAAATGTGAACTTGAAAA+TGG | + | chr7_3:80662620-80662639 | Msa1128760:CDS | 30.0% | |
| ! | TTCAACTATTTTCTCTCTCT+TGG | + | chr7_3:80662776-80662795 | Msa1128760:CDS | 30.0% |
| ! | TCAACTATTTTCTCTCTCTT+GGG | + | chr7_3:80662777-80662796 | Msa1128760:CDS | 30.0% |
| ! | AATTTTCTGTTCAATTGCTC+TGG | + | chr7_3:80663139-80663158 | Msa1128760:three_prime_UTR | 30.0% |
| TTCAACGTTAGTTATTACGG+CGG | - | chr7_3:80659472-80659491 | None:intergenic | 35.0% | |
| ! | AGAGAAAGTGTACTTGGAAT+GGG | - | chr7_3:80659615-80659634 | None:intergenic | 35.0% |
| TACCAAAGAAATGGAATGGA+GGG | - | chr7_3:80660212-80660231 | None:intergenic | 35.0% | |
| !! | AATCACCAAAGATTTTGGAG+TGG | + | chr7_3:80660444-80660463 | Msa1128760:intron | 35.0% |
| ! | GGAGTTTAACTTAGATCGTT+TGG | + | chr7_3:80660469-80660488 | Msa1128760:intron | 35.0% |
| TGCTCTATAAACATGCTTGA+AGG | + | chr7_3:80660579-80660598 | Msa1128760:CDS | 35.0% | |
| !! | TTGTGAATTTGTTGAGTGTG+AGG | + | chr7_3:80660686-80660705 | Msa1128760:intron | 35.0% |
| !! | TGTGAATTTGTTGAGTGTGA+GGG | + | chr7_3:80660687-80660706 | Msa1128760:intron | 35.0% |
| ! | AAACAAACAAGCGTTGTATG+GGG | - | chr7_3:80660719-80660738 | None:intergenic | 35.0% |
| ! | CAAACAAACAAGCGTTGTAT+GGG | - | chr7_3:80660720-80660739 | None:intergenic | 35.0% |
| ! | ACAAACAAACAAGCGTTGTA+TGG | - | chr7_3:80660721-80660740 | None:intergenic | 35.0% |
| ! | AATATGTACTCTAGCTTCTC+AGG | + | chr7_3:80660853-80660872 | Msa1128760:intron | 35.0% |
| TAAGTATACCAACACACACA+CGG | - | chr7_3:80660983-80661002 | None:intergenic | 35.0% | |
| ATAAGATCTTCTCTAGTACG+TGG | - | chr7_3:80661242-80661261 | None:intergenic | 35.0% | |
| TCAACAATAACAGCTTGCAA+AGG | - | chr7_3:80661277-80661296 | None:intergenic | 35.0% | |
| ! | ACGTACAGTTTGAAACAGAT+TGG | + | chr7_3:80661386-80661405 | Msa1128760:intron | 35.0% |
| ! | TTTTACACAGAAGAGTCATC+AGG | - | chr7_3:80661479-80661498 | None:intergenic | 35.0% |
| GTGAGAATTAAAGGAGTGAA+AGG | + | chr7_3:80661552-80661571 | Msa1128760:intron | 35.0% | |
| TTTATATGCCTGATATTGGG+TGG | + | chr7_3:80661587-80661606 | Msa1128760:intron | 35.0% | |
| TAACAGGTGATACTAAGTGA+TGG | + | chr7_3:80661658-80661677 | Msa1128760:intron | 35.0% | |
| ! | TAATTTGGAGTTGAACAACC+TGG | + | chr7_3:80661711-80661730 | Msa1128760:CDS | 35.0% |
| AAGAAATGAAGATACAAGCG+CGG | + | chr7_3:80661756-80661775 | Msa1128760:CDS | 35.0% | |
| ACAGTATGAATATGGGGATA+AGG | - | chr7_3:80661983-80662002 | None:intergenic | 35.0% | |
| CTACTGACAGTATGAATATG+GGG | - | chr7_3:80661989-80662008 | None:intergenic | 35.0% | |
| GTCAGTAGTTTATACTCTAG+TGG | + | chr7_3:80662001-80662020 | Msa1128760:intron | 35.0% | |
| TGCTATGATTCACATATCTC+AGG | + | chr7_3:80662272-80662291 | Msa1128760:intron | 35.0% | |
| TAAAATGCTTGTATCTGCCA+TGG | + | chr7_3:80662295-80662314 | Msa1128760:CDS | 35.0% | |
| AAAATGCTTGTATCTGCCAT+GGG | + | chr7_3:80662296-80662315 | Msa1128760:CDS | 35.0% | |
| GTAATTACACGAACAAGATG+TGG | - | chr7_3:80662551-80662570 | None:intergenic | 35.0% | |
| ! | TTACGATTCTTTTGAACCAG+AGG | + | chr7_3:80662567-80662586 | Msa1128760:CDS | 35.0% |
| AATGTGGATTCAAGTAGCAA+AGG | + | chr7_3:80662590-80662609 | Msa1128760:CDS | 35.0% | |
| !! | TATTGTAAAGGCACTGATGA+TGG | + | chr7_3:80662650-80662669 | Msa1128760:CDS | 35.0% |
| GTTAACAATGATGGTTGTGA+TGG | + | chr7_3:80662695-80662714 | Msa1128760:CDS | 35.0% | |
| ! | CAACTATTTTCTCTCTCTTG+GGG | + | chr7_3:80662778-80662797 | Msa1128760:CDS | 35.0% |
| GATTGTATGACTGCATGTAA+GGG | - | chr7_3:80662862-80662881 | None:intergenic | 35.0% | |
| TGATTGTATGACTGCATGTA+AGG | - | chr7_3:80662863-80662882 | None:intergenic | 35.0% | |
| CTAACGTTGAACCAAAATCG+CGG | + | chr7_3:80659481-80659500 | Msa1128760:five_prime_UTR | 40.0% | |
| GAATAGCAGAGAGAAGATAC+CGG | - | chr7_3:80659562-80659581 | None:intergenic | 40.0% | |
| ! | TCTCTCTGCTATTCTAGCTA+TGG | + | chr7_3:80659568-80659587 | Msa1128760:CDS | 40.0% |
| ! | GAGAGAAAGTGTACTTGGAA+TGG | - | chr7_3:80659616-80659635 | None:intergenic | 40.0% |
| ! | GAGAAGAGAGAAAGTGTACT+TGG | - | chr7_3:80659621-80659640 | None:intergenic | 40.0% |
| ! | CAATTTCAATTTAGGGCGTG+CGG | + | chr7_3:80659701-80659720 | Msa1128760:intron | 40.0% |
| TTACAGGTGTGGAAAGACAA+TGG | - | chr7_3:80659769-80659788 | None:intergenic | 40.0% | |
| !! | ACTCAAGTTGAGTCTGATCA+TGG | + | chr7_3:80659924-80659943 | Msa1128760:CDS | 40.0% |
| AGCATGTGCAGCTAGAAAAA+GGG | - | chr7_3:80660033-80660052 | None:intergenic | 40.0% | |
| AAGCATGTGCAGCTAGAAAA+AGG | - | chr7_3:80660034-80660053 | None:intergenic | 40.0% | |
| !!! | TTTTTCTAGCTGCACATGCT+TGG | + | chr7_3:80660033-80660052 | Msa1128760:intron | 40.0% |
| CTACCAAAGAAATGGAATGG+AGG | - | chr7_3:80660213-80660232 | None:intergenic | 40.0% | |
| !!! | ACCAAAGATTTTGGAGTGGA+GGG | + | chr7_3:80660448-80660467 | Msa1128760:intron | 40.0% |
| !! | TCGTTTGGCTTACCTTTTGT+TGG | + | chr7_3:80660484-80660503 | Msa1128760:intron | 40.0% |
| AACATGCTTGAAGGTGATAC+TGG | + | chr7_3:80660588-80660607 | Msa1128760:CDS | 40.0% | |
| ACATGCTTGAAGGTGATACT+GGG | + | chr7_3:80660589-80660608 | Msa1128760:CDS | 40.0% | |
| ATCTTTAAACCCTGCTTGTC+TGG | + | chr7_3:80660781-80660800 | Msa1128760:intron | 40.0% | |
| !!! | GCCATCAAGTCTGTTTTTGT+CGG | + | chr7_3:80661070-80661089 | Msa1128760:CDS | 40.0% |
| TCCGACAAAAACAGACTTGA+TGG | - | chr7_3:80661074-80661093 | None:intergenic | 40.0% | |
| AACTGTACGTAAGTGCAACA+TGG | - | chr7_3:80661376-80661395 | None:intergenic | 40.0% | |
| ! | AGTTTGAAACAGATTGGCTC+TGG | + | chr7_3:80661392-80661411 | Msa1128760:intron | 40.0% |
| AGCTCATGTGAAAGCTTCTA+AGG | + | chr7_3:80661439-80661458 | Msa1128760:CDS | 40.0% | |
| AACAACCTGGATGTTGAAAC+TGG | + | chr7_3:80661724-80661743 | Msa1128760:CDS | 40.0% | |
| CAATGATACCTGGTGTAGAT+TGG | + | chr7_3:80662147-80662166 | Msa1128760:intron | 40.0% | |
| CTGGCATGATATCTTGTAGT+TGG | - | chr7_3:80662338-80662357 | None:intergenic | 40.0% | |
| ! | TCTTTTGAACCAGAGGAATG+TGG | + | chr7_3:80662574-80662593 | Msa1128760:CDS | 40.0% |
| TACTTGAATCCACATTCCTC+TGG | - | chr7_3:80662586-80662605 | None:intergenic | 40.0% | |
| !! | CAAGTTCACATTTTGGAGAG+AGG | - | chr7_3:80662616-80662635 | None:intergenic | 40.0% |
| ACACATGCAATATAAGCCAC+CGG | - | chr7_3:80662737-80662756 | None:intergenic | 40.0% | |
| CAGTTAGGTCCTCAATACAA+AGG | - | chr7_3:80662814-80662833 | None:intergenic | 40.0% | |
| TTGGCTTCAGTGATTCAGTT+AGG | - | chr7_3:80662829-80662848 | None:intergenic | 40.0% | |
| AACTGAATCACTGAAGCCAA+TGG | + | chr7_3:80662829-80662848 | Msa1128760:CDS | 40.0% | |
| CAGTAAGGTGATAACTTCGA+AGG | + | chr7_3:80662932-80662951 | Msa1128760:exon | 40.0% | |
| AGAGAAGATACCGGCAACAA+GGG | - | chr7_3:80659553-80659572 | None:intergenic | 45.0% | |
| GGAATGGGAGATTAAGCAGT+CGG | - | chr7_3:80659600-80659619 | None:intergenic | 45.0% | |
| CTCCCTCCATTCCATTTCTT+TGG | + | chr7_3:80660207-80660226 | Msa1128760:intron | 45.0% | |
| !!! | CACCAAAGATTTTGGAGTGG+AGG | + | chr7_3:80660447-80660466 | Msa1128760:intron | 45.0% |
| TCCCTCCACTCCAAAATCTT+TGG | - | chr7_3:80660452-80660471 | None:intergenic | 45.0% | |
| CTCAAAACACCAGACAAGCA+GGG | - | chr7_3:80660793-80660812 | None:intergenic | 45.0% | |
| ACTCAAAACACCAGACAAGC+AGG | - | chr7_3:80660794-80660813 | None:intergenic | 45.0% | |
| CACACGGCATCTGCATATTT+AGG | - | chr7_3:80660967-80660986 | None:intergenic | 45.0% | |
| GGTTGTGCAGATGCTCAATA+TGG | + | chr7_3:80661048-80661067 | Msa1128760:intron | 45.0% | |
| !! | AAACAGATTGGCTCTGGAGT+TGG | + | chr7_3:80661398-80661417 | Msa1128760:intron | 45.0% |
| ! | TAAAGGAGTGAAAGGTGCAC+TGG | + | chr7_3:80661560-80661579 | Msa1128760:intron | 45.0% |
| CAATAGCACCACCCAATATC+AGG | - | chr7_3:80661598-80661617 | None:intergenic | 45.0% | |
| ! | TGCTTGCATAGACTGCGTTT+TGG | + | chr7_3:80661787-80661806 | Msa1128760:intron | 45.0% |
| GGTAGCTCCTACTATGATTG+TGG | + | chr7_3:80662023-80662042 | Msa1128760:intron | 45.0% | |
| ATGCAGATCCAATCTACACC+AGG | - | chr7_3:80662158-80662177 | None:intergenic | 45.0% | |
| CTTTCTGATGCAGATTCCCA+TGG | - | chr7_3:80662315-80662334 | None:intergenic | 45.0% | |
| TTACACGAACAAGATGTGGC+AGG | - | chr7_3:80662547-80662566 | None:intergenic | 45.0% | |
| ! | CCTCAATACAAAGGTTAGCC+TGG | - | chr7_3:80662805-80662824 | None:intergenic | 45.0% |
| CCAGGCTAACCTTTGTATTG+AGG | + | chr7_3:80662802-80662821 | Msa1128760:CDS | 45.0% | |
| ATGTAAGGGAGGAGAACCAT+TGG | - | chr7_3:80662848-80662867 | None:intergenic | 45.0% | |
| TGTATGACTGCATGTAAGGG+AGG | - | chr7_3:80662859-80662878 | None:intergenic | 45.0% | |
| CAATCTACTCACGATGTCGA+AGG | - | chr7_3:80662959-80662978 | None:intergenic | 45.0% | |
| ACGTTGAACCAAAATCGCGG+TGG | + | chr7_3:80659484-80659503 | Msa1128760:five_prime_UTR | 50.0% | |
| ACCAAAATCGCGGTGGAGTT+TGG | + | chr7_3:80659491-80659510 | Msa1128760:five_prime_UTR | 50.0% | |
| ! | TCCAAACTCCACCGCGATTT+TGG | - | chr7_3:80659495-80659514 | None:intergenic | 50.0% |
| ! | GGAGTTTGGAAGCATGGCTA+CGG | + | chr7_3:80659505-80659524 | Msa1128760:exon | 50.0% |
| GAGAGAAGATACCGGCAACA+AGG | - | chr7_3:80659554-80659573 | None:intergenic | 50.0% | |
| TGGGAGATTAAGCAGTCGGA+AGG | - | chr7_3:80659596-80659615 | None:intergenic | 50.0% | |
| GTGCGGTGAAGGCTCAATTA+CGG | + | chr7_3:80659718-80659737 | Msa1128760:CDS | 50.0% | |
| CCTGGATGTTGAAACTGGCT+CGG | + | chr7_3:80661729-80661748 | Msa1128760:CDS | 50.0% | |
| ACAAGATGTGGCAGGCAAAC+TGG | - | chr7_3:80662539-80662558 | None:intergenic | 50.0% | |
| !! | AGGCACTGATGATGGATCTG+AGG | + | chr7_3:80662658-80662677 | Msa1128760:CDS | 50.0% |
| !! | GGCACTGATGATGGATCTGA+GGG | + | chr7_3:80662659-80662678 | Msa1128760:CDS | 50.0% |
| ! | TTTTCTCTCTCTTGGGGACC+AGG | + | chr7_3:80662784-80662803 | Msa1128760:CDS | 50.0% |
| ATCCCTCTCTCCCTTGTTGC+CGG | + | chr7_3:80659540-80659559 | Msa1128760:CDS | 55.0% | |
| TACCGGCAACAAGGGAGAGA+GGG | - | chr7_3:80659545-80659564 | None:intergenic | 55.0% | |
| ATACCGGCAACAAGGGAGAG+AGG | - | chr7_3:80659546-80659565 | None:intergenic | 55.0% | |
| ! | CAATTTAGGGCGTGCGGTGA+AGG | + | chr7_3:80659707-80659726 | Msa1128760:intron | 55.0% |
| GTCTGATCATGGCTCCGTCT+TGG | + | chr7_3:80659935-80659954 | Msa1128760:CDS | 55.0% | |
| TGCAGATGCCGTGTGTGTGT+TGG | + | chr7_3:80660972-80660991 | Msa1128760:intron | 55.0% | |
| !! | GGCTCTGGAGTTGGCTTAGT+TGG | + | chr7_3:80661407-80661426 | Msa1128760:CDS | 55.0% |
| CCGAGCCAGTTTCAACATCC+AGG | - | chr7_3:80661732-80661751 | None:intergenic | 55.0% | |
| TGGTTGTGATGGCCAGCCAA+AGG | + | chr7_3:80662706-80662725 | Msa1128760:CDS | 55.0% | |
| TAAGCCACCGGTGCTTCCTT+TGG | - | chr7_3:80662725-80662744 | None:intergenic | 55.0% | |
| CGCGGTGGAGTTTGGAAGCA+TGG | + | chr7_3:80659499-80659518 | Msa1128760:exon | 60.0% | |
| CATGGCTACGGAGCAAGCAC+TGG | + | chr7_3:80659517-80659536 | Msa1128760:exon | 60.0% | |
| ! | TGGCCAGCCAAAGGAAGCAC+CGG | + | chr7_3:80662715-80662734 | Msa1128760:CDS | 60.0% |
| CCACCGGTGCTTCCTTTGGC+TGG | - | chr7_3:80662721-80662740 | None:intergenic | 65.0% | |
| !! | CCAGCCAAAGGAAGCACCGG+TGG | + | chr7_3:80662718-80662737 | Msa1128760:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_3 | gene | 80659445 | 80663172 | 80659445 | ID=Msa1128760;Name=Msa1128760 |
| chr7_3 | mRNA | 80659445 | 80663172 | 80659445 | ID=Msa1128760-mRNA-1;Parent=Msa1128760;Name=Msa1128760-mRNA-1;_AED=0.31;_eAED=0.31;_QI=73|1|1|1|1|1|10|235|401 |
| chr7_3 | exon | 80659445 | 80659621 | 80659445 | ID=Msa1128760-mRNA-1:exon:23167;Parent=Msa1128760-mRNA-1 |
| chr7_3 | exon | 80659715 | 80659784 | 80659715 | ID=Msa1128760-mRNA-1:exon:23168;Parent=Msa1128760-mRNA-1 |
| chr7_3 | exon | 80659876 | 80660001 | 80659876 | ID=Msa1128760-mRNA-1:exon:23169;Parent=Msa1128760-mRNA-1 |
| chr7_3 | exon | 80660103 | 80660166 | 80660103 | ID=Msa1128760-mRNA-1:exon:23170;Parent=Msa1128760-mRNA-1 |
| chr7_3 | exon | 80660523 | 80660610 | 80660523 | ID=Msa1128760-mRNA-1:exon:23171;Parent=Msa1128760-mRNA-1 |
| chr7_3 | exon | 80661058 | 80661142 | 80661058 | ID=Msa1128760-mRNA-1:exon:23172;Parent=Msa1128760-mRNA-1 |
| chr7_3 | exon | 80661404 | 80661460 | 80661404 | ID=Msa1128760-mRNA-1:exon:23173;Parent=Msa1128760-mRNA-1 |
| chr7_3 | exon | 80661664 | 80661777 | 80661664 | ID=Msa1128760-mRNA-1:exon:23174;Parent=Msa1128760-mRNA-1 |
| chr7_3 | exon | 80662294 | 80662364 | 80662294 | ID=Msa1128760-mRNA-1:exon:23175;Parent=Msa1128760-mRNA-1 |
| chr7_3 | exon | 80662511 | 80663172 | 80662511 | ID=Msa1128760-mRNA-1:exon:23176;Parent=Msa1128760-mRNA-1 |
| chr7_3 | five_prime_UTR | 80659445 | 80659517 | 80659445 | ID=Msa1128760-mRNA-1:five_prime_utr;Parent=Msa1128760-mRNA-1 |
| chr7_3 | CDS | 80659518 | 80659621 | 80659518 | ID=Msa1128760-mRNA-1:cds;Parent=Msa1128760-mRNA-1 |
| chr7_3 | CDS | 80659715 | 80659784 | 80659715 | ID=Msa1128760-mRNA-1:cds;Parent=Msa1128760-mRNA-1 |
| chr7_3 | CDS | 80659876 | 80660001 | 80659876 | ID=Msa1128760-mRNA-1:cds;Parent=Msa1128760-mRNA-1 |
| chr7_3 | CDS | 80660103 | 80660166 | 80660103 | ID=Msa1128760-mRNA-1:cds;Parent=Msa1128760-mRNA-1 |
| chr7_3 | CDS | 80660523 | 80660610 | 80660523 | ID=Msa1128760-mRNA-1:cds;Parent=Msa1128760-mRNA-1 |
| chr7_3 | CDS | 80661058 | 80661142 | 80661058 | ID=Msa1128760-mRNA-1:cds;Parent=Msa1128760-mRNA-1 |
| chr7_3 | CDS | 80661404 | 80661460 | 80661404 | ID=Msa1128760-mRNA-1:cds;Parent=Msa1128760-mRNA-1 |
| chr7_3 | CDS | 80661664 | 80661777 | 80661664 | ID=Msa1128760-mRNA-1:cds;Parent=Msa1128760-mRNA-1 |
| chr7_3 | CDS | 80662294 | 80662364 | 80662294 | ID=Msa1128760-mRNA-1:cds;Parent=Msa1128760-mRNA-1 |
| chr7_3 | CDS | 80662511 | 80662937 | 80662511 | ID=Msa1128760-mRNA-1:cds;Parent=Msa1128760-mRNA-1 |
| chr7_3 | three_prime_UTR | 80662938 | 80663172 | 80662938 | ID=Msa1128760-mRNA-1:three_prime_utr;Parent=Msa1128760-mRNA-1 |
| Gene Sequence |
| Protein sequence |
