Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1393890 | XP_003626320.1 | 93.434 | 396 | 26 | 0 | 6 | 401 | 2 | 397 | 0.0 | 757 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1393890 | sp|Q96G04|EF2KT_HUMAN | 24.603 | 378 | 214 | 11 | 15 | 389 | 19 | 328 | 3.89e-21 | 96.7 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1393890 | G7KZP5 | 93.434 | 396 | 26 | 0 | 6 | 401 | 2 | 397 | 0.0 | 757 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0229230 | Msa1393890 | 0.801938 | 7.109475e-49 | -8.615850e-47 |
| Msa1302830 | Msa1393890 | 0.816391 | 5.665694e-52 | -8.615850e-47 |
| Msa1102220 | Msa1393890 | 0.818070 | 2.374012e-52 | -8.615850e-47 |
| Msa1128760 | Msa1393890 | 0.972966 | 1.229572e-135 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1393890 | MtrunA17_Chr7g0273091 | 93.434 | 396 | 26 | 0 | 6 | 401 | 2 | 397 | 0.0 | 757 |
| Msa1393890 | MtrunA17_Chr5g0405981 | 34.043 | 141 | 76 | 4 | 144 | 283 | 42 | 166 | 1.51e-11 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1393890 | AT5G27400.1 | 49.091 | 385 | 157 | 6 | 17 | 393 | 14 | 367 | 1.61e-118 | 349 |
| Msa1393890 | AT5G27410.2 | 48.082 | 391 | 162 | 7 | 17 | 399 | 14 | 371 | 3.91e-108 | 339 |
Find 90 sgRNAs with CRISPR-Local
Find 196 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTCCACATCACTTCAAATT+TGG | 0.100481 | tig0021765:+59576 | None:intergenic |
| TCAATACATTACATCATTTA+AGG | 0.119855 | tig0021765:-59040 | Msa1393890:intron |
| TCCAAACTCCACCGCGATTT+TGG | 0.193139 | tig0021765:+59528 | None:intergenic |
| AACTAACATGAAGTTTAATT+TGG | 0.203591 | tig0021765:-57324 | Msa1393890:CDS |
| GTTTCTGCTTGTTTATTAAT+AGG | 0.259743 | tig0021765:-55933 | Msa1393890:three_prime_UTR |
| ACCAAAATCGCGGTGGAGTT+TGG | 0.270523 | tig0021765:-59529 | Msa1393890:five_prime_UTR |
| GGCTCTGGAGTTGGCTTAGT+TGG | 0.282693 | tig0021765:-57613 | Msa1393890:CDS |
| CCAAAATGTGAACTTGAAAA+TGG | 0.291962 | tig0021765:-56400 | Msa1393890:CDS |
| CTTATATTGCATGTGTTATT+CGG | 0.308249 | tig0021765:-56279 | Msa1393890:CDS |
| AACATGCTTGAAGGTGATAC+TGG | 0.315082 | tig0021765:-58432 | Msa1393890:CDS |
| GAGCATAGAGTTCATAAAAT+TGG | 0.322064 | tig0021765:+59061 | None:intergenic |
| TTCCACATCACTTCAAATTT+GGG | 0.332750 | tig0021765:+59577 | None:intergenic |
| ATCCCTCTCTCCCTTGTTGC+CGG | 0.341195 | tig0021765:-59480 | Msa1393890:CDS |
| TTAAGAAAATTCTTCAAGTA+AGG | 0.361862 | tig0021765:+59129 | None:intergenic |
| TGGTTCAACGTTAGTTATTA+CGG | 0.374301 | tig0021765:+59548 | None:intergenic |
| ACTTTATTAGAAAATAATTC+TGG | 0.375795 | tig0021765:+57910 | None:intergenic |
| AGCTCATGTGAAAGCTTCTA+AGG | 0.381887 | tig0021765:-57581 | Msa1393890:intron |
| TAAGCCACCGGTGCTTCCTT+TGG | 0.398341 | tig0021765:+56298 | None:intergenic |
| CCACCGGTGCTTCCTTTGGC+TGG | 0.400499 | tig0021765:+56302 | None:intergenic |
| GAGAGAAAGTGTACTTGGAA+TGG | 0.403038 | tig0021765:+59407 | None:intergenic |
| ACAAGATGTGGCAGGCAAAC+TGG | 0.404994 | tig0021765:+56484 | None:intergenic |
| TTGGCTTCAGTGATTCAGTT+AGG | 0.408285 | tig0021765:+56194 | None:intergenic |
| AACAACCTGGATGTTGAAAC+TGG | 0.420207 | tig0021765:-57296 | Msa1393890:CDS |
| GGTTGTGCAGATGCTCAATA+TGG | 0.422705 | tig0021765:-57972 | Msa1393890:intron |
| CTGGCATGATATCTTGTAGT+TGG | 0.423115 | tig0021765:+56685 | None:intergenic |
| TTCTAATAAAGTGTGCTTTG+AGG | 0.425085 | tig0021765:-57899 | Msa1393890:intron |
| TACTTGAATCCACATTCCTC+TGG | 0.440543 | tig0021765:+56437 | None:intergenic |
| GTCTGATCATGGCTCCGTCT+TGG | 0.441267 | tig0021765:-59085 | Msa1393890:CDS |
| AGAGAAAGTGTACTTGGAAT+GGG | 0.444069 | tig0021765:+59408 | None:intergenic |
| TTCAATTCTCACATAACATC+TGG | 0.449400 | tig0021765:+56666 | None:intergenic |
| TGCTCTATAAACATGCTTGA+AGG | 0.457971 | tig0021765:-58441 | Msa1393890:CDS |
| AAACAGATTGGCTCTGGAGT+TGG | 0.464349 | tig0021765:-57622 | Msa1393890:intron |
| TATTGTAAAGGCACTGATGA+TGG | 0.475537 | tig0021765:-56370 | Msa1393890:CDS |
| CAATTTAGGGCGTGCGGTGA+AGG | 0.476313 | tig0021765:-59313 | Msa1393890:intron |
| AGTTTGAAACAGATTGGCTC+TGG | 0.481295 | tig0021765:-57628 | Msa1393890:intron |
| CATGGCTACGGAGCAAGCAC+TGG | 0.482782 | tig0021765:-59503 | Msa1393890:CDS |
| TGATTGTATGACTGCATGTA+AGG | 0.483753 | tig0021765:+56160 | None:intergenic |
| CCGAGCCAGTTTCAACATCC+AGG | 0.484381 | tig0021765:+57291 | None:intergenic |
| TACAAATCAGTTAACAATGA+TGG | 0.490339 | tig0021765:-56334 | Msa1393890:CDS |
| CGCGGTGGAGTTTGGAAGCA+TGG | 0.492947 | tig0021765:-59521 | Msa1393890:exon |
| TCTCTCTGCTATTCTAGCTA+TGG | 0.499916 | tig0021765:-59452 | Msa1393890:CDS |
| AATGGTGAACATTATTGTAA+AGG | 0.506975 | tig0021765:-56382 | Msa1393890:CDS |
| CTTTCTGATGCAGATTCCCA+TGG | 0.513767 | tig0021765:+56708 | None:intergenic |
| GTGCGGTGAAGGCTCAATTA+CGG | 0.514764 | tig0021765:-59302 | Msa1393890:CDS |
| TCATGTTAGTTAAAGTTGAA+AGG | 0.514800 | tig0021765:+57336 | None:intergenic |
| TGTAAAATCATACTACAGTA+AGG | 0.516898 | tig0021765:-56103 | Msa1393890:exon |
| CCAGGCTAACCTTTGTATTG+AGG | 0.517309 | tig0021765:-56218 | Msa1393890:CDS |
| ATAATTGAAATTTACAGGTG+TGG | 0.525681 | tig0021765:+59243 | None:intergenic |
| ACTCAAGTTGAGTCTGATCA+TGG | 0.531090 | tig0021765:-59096 | Msa1393890:CDS |
| TAAAATGCTTGTATCTGCCA+TGG | 0.533484 | tig0021765:-56725 | Msa1393890:CDS |
| GAGAGAAGATACCGGCAACA+AGG | 0.535615 | tig0021765:+59469 | None:intergenic |
| CCTCAATACAAAGGTTAGCC+TGG | 0.542794 | tig0021765:+56218 | None:intergenic |
| GGCACTGATGATGGATCTGA+GGG | 0.551322 | tig0021765:-56361 | Msa1393890:CDS |
| AGAGAAGATACCGGCAACAA+GGG | 0.556723 | tig0021765:+59470 | None:intergenic |
| GGAGTTTGGAAGCATGGCTA+CGG | 0.557040 | tig0021765:-59515 | Msa1393890:exon |
| ATGTTTATAGAGCACTGTAA+TGG | 0.571157 | tig0021765:+58450 | None:intergenic |
| TGGCCAGCCAAAGGAAGCAC+CGG | 0.574654 | tig0021765:-56305 | Msa1393890:CDS |
| CCAGCCAAAGGAAGCACCGG+TGG | 0.577812 | tig0021765:-56302 | Msa1393890:CDS |
| AGGCACTGATGATGGATCTG+AGG | 0.585302 | tig0021765:-56362 | Msa1393890:CDS |
| CAATCTACTCACGATGTCGA+AGG | 0.588943 | tig0021765:+56064 | None:intergenic |
| TAATTTGGAGTTGAACAACC+TGG | 0.595057 | tig0021765:-57309 | Msa1393890:CDS |
| ACATGCTTGAAGGTGATACT+GGG | 0.604475 | tig0021765:-58431 | Msa1393890:intron |
| CAGTTAGGTCCTCAATACAA+AGG | 0.605293 | tig0021765:+56209 | None:intergenic |
| AGCCCAAATTTGAAGTGATG+TGG | 0.606078 | tig0021765:-59579 | None:intergenic |
| ATACCGGCAACAAGGGAGAG+AGG | 0.606417 | tig0021765:+59477 | None:intergenic |
| TTCATAAAATTGGTCCAAGA+CGG | 0.608371 | tig0021765:+59071 | None:intergenic |
| CAATTTCAATTTAGGGCGTG+CGG | 0.609491 | tig0021765:-59319 | Msa1393890:intron |
| TACCGGCAACAAGGGAGAGA+GGG | 0.609497 | tig0021765:+59478 | None:intergenic |
| AAAATGCTTGTATCTGCCAT+GGG | 0.613039 | tig0021765:-56724 | Msa1393890:CDS |
| TAACAGGTGATACTAAGTGA+TGG | 0.614593 | tig0021765:-57362 | Msa1393890:intron |
| GAATAGCAGAGAGAAGATAC+CGG | 0.615935 | tig0021765:+59461 | None:intergenic |
| GGAATGGGAGATTAAGCAGT+CGG | 0.618022 | tig0021765:+59423 | None:intergenic |
| CCTGGATGTTGAAACTGGCT+CGG | 0.618820 | tig0021765:-57291 | Msa1393890:CDS |
| GTTAACAATGATGGTTGTGA+TGG | 0.618833 | tig0021765:-56325 | Msa1393890:CDS |
| GTAATTACACGAACAAGATG+TGG | 0.621214 | tig0021765:+56472 | None:intergenic |
| ATGTAAGGGAGGAGAACCAT+TGG | 0.622301 | tig0021765:+56175 | None:intergenic |
| TTACACGAACAAGATGTGGC+AGG | 0.624577 | tig0021765:+56476 | None:intergenic |
| CAGTAAGGTGATAACTTCGA+AGG | 0.625275 | tig0021765:-56088 | Msa1393890:exon |
| AATGTGGATTCAAGTAGCAA+AGG | 0.629953 | tig0021765:-56430 | Msa1393890:CDS |
| TGGGAGATTAAGCAGTCGGA+AGG | 0.635091 | tig0021765:+59427 | None:intergenic |
| AACTGAATCACTGAAGCCAA+TGG | 0.639835 | tig0021765:-56191 | Msa1393890:CDS |
| TTACAGGTGTGGAAAGACAA+TGG | 0.650560 | tig0021765:+59254 | None:intergenic |
| ACACATGCAATATAAGCCAC+CGG | 0.657568 | tig0021765:+56286 | None:intergenic |
| GATTGTATGACTGCATGTAA+GGG | 0.662724 | tig0021765:+56161 | None:intergenic |
| TGGTTGTGATGGCCAGCCAA+AGG | 0.707964 | tig0021765:-56314 | Msa1393890:CDS |
| TGTATGACTGCATGTAAGGG+AGG | 0.709033 | tig0021765:+56164 | None:intergenic |
| TTCAACGTTAGTTATTACGG+CGG | 0.722189 | tig0021765:+59551 | None:intergenic |
| AAGAAATGAAGATACAAGCG+CGG | 0.722268 | tig0021765:-57264 | Msa1393890:intron |
| ACGTTGAACCAAAATCGCGG+TGG | 0.733012 | tig0021765:-59536 | Msa1393890:five_prime_UTR |
| CTAACGTTGAACCAAAATCG+CGG | 0.752599 | tig0021765:-59539 | Msa1393890:five_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTTATTTTTATTTTTTT+TGG | - | tig0021765:58831-58850 | Msa1393890:intron | 0.0% |
| !!! | ATTTTAAATTATAAATAAAT+TGG | - | tig0021765:59463-59482 | Msa1393890:CDS | 0.0% |
| !!! | ATTTTTTTTAAAAACACAAA+TGG | + | tig0021765:56836-56855 | None:intergenic | 10.0% |
| !! | ACAATTATTGGTAAAATTAA+GGG | + | tig0021765:56719-56738 | None:intergenic | 15.0% |
| !! | AACAATTATTGGTAAAATTA+AGG | + | tig0021765:56720-56739 | None:intergenic | 15.0% |
| !! | ACAATTTGTAAAACAATTAT+TGG | + | tig0021765:56731-56750 | None:intergenic | 15.0% |
| !! | ACTTTATTAGAAAATAATTC+TGG | + | tig0021765:57538-57557 | None:intergenic | 15.0% |
| !! | TTATTTACAATTTAGCAAAA+TGG | + | tig0021765:58309-58328 | None:intergenic | 15.0% |
| !! | TTTATGTTATTATTTCAGTT+TGG | - | tig0021765:58918-58937 | Msa1393890:CDS | 15.0% |
| !! | TTATGTTATTATTTCAGTTT+GGG | - | tig0021765:58919-58938 | Msa1393890:CDS | 15.0% |
| !! | AGTTTATGCAATTTCAATTT+AGG | - | tig0021765:56118-56137 | Msa1393890:CDS | 20.0% |
| !! | GTTTATGCAATTTCAATTTA+GGG | - | tig0021765:56119-56138 | Msa1393890:CDS | 20.0% |
| !! | AGAAGATAATTGAAATTTAC+AGG | + | tig0021765:56210-56229 | None:intergenic | 20.0% |
| !!! | GAAAGATTTTAACAATCATA+TGG | + | tig0021765:56254-56273 | None:intergenic | 20.0% |
| !! | TTAAGAAAATTCTTCAAGTA+AGG | + | tig0021765:56319-56338 | None:intergenic | 20.0% |
| !! | TCAATACATTACATCATTTA+AGG | - | tig0021765:56405-56424 | Msa1393890:CDS | 20.0% |
| !! | CCTATTAGGAAAAAAAAAAA+GGG | + | tig0021765:56509-56528 | None:intergenic | 20.0% |
| !! | TCCTATTAGGAAAAAAAAAA+AGG | + | tig0021765:56510-56529 | None:intergenic | 20.0% |
| !!! | AATAAAATCACCAAAGATTT+TGG | - | tig0021765:56864-56883 | Msa1393890:intron | 20.0% |
| !! | TAATTGTTTGAACATTTGTT+GGG | - | tig0021765:57333-57352 | Msa1393890:CDS | 20.0% |
| !! | TTTCATTTATTGCACTAAAA+CGG | - | tig0021765:57753-57772 | Msa1393890:intron | 20.0% |
| !!! | ATTTTTTATATGCCTGATAT+TGG | - | tig0021765:58008-58027 | Msa1393890:intron | 20.0% |
| !!! | TTTTTTATATGCCTGATATT+GGG | - | tig0021765:58009-58028 | Msa1393890:intron | 20.0% |
| !! | AACTAACATGAAGTTTAATT+TGG | - | tig0021765:58121-58140 | Msa1393890:intron | 20.0% |
| !! | AATGTCAAAAAGATGAAAAT+TGG | + | tig0021765:58490-58509 | None:intergenic | 20.0% |
| !! | TTGTATAAAAATAGTCATTG+AGG | - | tig0021765:58626-58645 | Msa1393890:intron | 20.0% |
| ! | ATAAACTAAGCTTAAAATGC+AGG | + | tig0021765:56105-56124 | None:intergenic | 25.0% |
| ! | ATAATTGAAATTTACAGGTG+TGG | + | tig0021765:56205-56224 | None:intergenic | 25.0% |
| !!! | CCCTTTTTTTTTTTCCTAAT+AGG | - | tig0021765:56506-56525 | Msa1393890:CDS | 25.0% |
| !! | ATTTCATTTCTTTTTCCTCA+TGG | - | tig0021765:56570-56589 | Msa1393890:intron | 25.0% |
| ! | TCTAATAATGATTTACCATG+AGG | + | tig0021765:56588-56607 | None:intergenic | 25.0% |
| !! | TAAAAACACAAATGGTGTTT+TGG | + | tig0021765:56828-56847 | None:intergenic | 25.0% |
| ! | CAATACAATTTACCAACAAA+AGG | + | tig0021765:56924-56943 | None:intergenic | 25.0% |
| ! | ATTTAGTATACAGCATTTCA+GGG | - | tig0021765:57070-57089 | Msa1393890:intron | 25.0% |
| ! | CTAATTGTTTGAACATTTGT+TGG | - | tig0021765:57332-57351 | Msa1393890:CDS | 25.0% |
| !! | TTGAGGTAAGTTATGTTTTT+AGG | - | tig0021765:57563-57582 | Msa1393890:intron | 25.0% |
| ! | TTCATTTATTGCACTAAAAC+GGG | - | tig0021765:57754-57773 | Msa1393890:intron | 25.0% |
| ! | TTAAACAGAGTGAGAATTAA+AGG | - | tig0021765:57968-57987 | Msa1393890:intron | 25.0% |
| ! | TCATGTTAGTTAAAGTTGAA+AGG | + | tig0021765:58112-58131 | None:intergenic | 25.0% |
| ! | TAAAAATCCACAATCATAGT+AGG | + | tig0021765:58458-58477 | None:intergenic | 25.0% |
| !! | TATGATTGTGGATTTTTACA+TGG | - | tig0021765:58460-58479 | Msa1393890:CDS | 25.0% |
| ! | AGATACAGAATTTGAACAAA+AGG | + | tig0021765:58522-58541 | None:intergenic | 25.0% |
| ! | ATACTAAAATCAATGATACC+TGG | - | tig0021765:58562-58581 | Msa1393890:intron | 25.0% |
| ! | AATGGTGAACATTATTGTAA+AGG | - | tig0021765:59063-59082 | Msa1393890:CDS | 25.0% |
| ! | TACAAATCAGTTAACAATGA+TGG | - | tig0021765:59111-59130 | Msa1393890:CDS | 25.0% |
| !! | CTTATATTGCATGTGTTATT+CGG | - | tig0021765:59166-59185 | Msa1393890:intron | 25.0% |
| ! | TGTAAAATCATACTACAGTA+AGG | - | tig0021765:59342-59361 | Msa1393890:intron | 25.0% |
| ! | GTGAGTAGATTGAAAAATAT+AGG | - | tig0021765:59392-59411 | Msa1393890:intron | 25.0% |
| ! | GTTTCTGCTTGTTTATTAAT+AGG | - | tig0021765:59512-59531 | Msa1393890:exon | 25.0% |
| TGGTTCAACGTTAGTTATTA+CGG | + | tig0021765:55900-55919 | None:intergenic | 30.0% | |
| TTCATAAAATTGGTCCAAGA+CGG | + | tig0021765:56377-56396 | None:intergenic | 30.0% | |
| GAGCATAGAGTTCATAAAAT+TGG | + | tig0021765:56387-56406 | None:intergenic | 30.0% | |
| GTCTAAACTATCATCCTATT+AGG | + | tig0021765:56523-56542 | None:intergenic | 30.0% | |
| AAACTACCAAAGAAATGGAA+TGG | + | tig0021765:56641-56660 | None:intergenic | 30.0% | |
| ! | TCCATTTCTTTGGTAGTTTA+AGG | - | tig0021765:56642-56661 | Msa1393890:intron | 30.0% |
| ACCTTAAACTACCAAAGAAA+TGG | + | tig0021765:56646-56665 | None:intergenic | 30.0% | |
| AGTATTAATGCTCTTTGCAT+TGG | + | tig0021765:56760-56779 | None:intergenic | 30.0% | |
| ! | TGTTGGTAAATTGTATTGCT+AGG | - | tig0021765:56926-56945 | Msa1393890:intron | 30.0% |
| !! | ATGTTTATAGAGCACTGTAA+TGG | + | tig0021765:56998-57017 | None:intergenic | 30.0% |
| CATTTAGTATACAGCATTTC+AGG | - | tig0021765:57069-57088 | Msa1393890:intron | 30.0% | |
| !! | TACCTTCTGAAAGTTAGTTT+TGG | - | tig0021765:57447-57466 | Msa1393890:intron | 30.0% |
| AACCAAAACTAACTTTCAGA+AGG | + | tig0021765:57452-57471 | None:intergenic | 30.0% | |
| !!! | TCTGAAAGTTAGTTTTGGTT+TGG | - | tig0021765:57452-57471 | Msa1393890:intron | 30.0% |
| TTCTAATAAAGTGTGCTTTG+AGG | - | tig0021765:57546-57565 | Msa1393890:intron | 30.0% | |
| GTAAAACGTATTGAACACAA+AGG | - | tig0021765:57918-57937 | Msa1393890:CDS | 30.0% | |
| !!! | TAGTTCCAGTGTTTTTTAAC+AGG | - | tig0021765:58067-58086 | Msa1393890:intron | 30.0% |
| TATCACCTGTTAAAAAACAC+TGG | + | tig0021765:58075-58094 | None:intergenic | 30.0% | |
| AATATGGGGATAAGGTTAAA+AGG | + | tig0021765:58400-58419 | None:intergenic | 30.0% | |
| ACTACTGACAGTATGAATAT+GGG | + | tig0021765:58415-58434 | None:intergenic | 30.0% | |
| AACTACTGACAGTATGAATA+TGG | + | tig0021765:58416-58435 | None:intergenic | 30.0% | |
| TCAGTAGTTTATACTCTAGT+GGG | - | tig0021765:58427-58446 | Msa1393890:intron | 30.0% | |
| TTCAATTCTCACATAACATC+TGG | + | tig0021765:58782-58801 | None:intergenic | 30.0% | |
| ! | TAAACAATGCTTTGTTCAAG+AGG | + | tig0021765:58812-58831 | None:intergenic | 30.0% |
| !!! | CCATTTTCAAGTTCACATTT+TGG | + | tig0021765:59048-59067 | None:intergenic | 30.0% |
| CCAAAATGTGAACTTGAAAA+TGG | - | tig0021765:59045-59064 | Msa1393890:CDS | 30.0% | |
| ! | TTCAACTATTTTCTCTCTCT+TGG | - | tig0021765:59201-59220 | Msa1393890:intron | 30.0% |
| ! | TCAACTATTTTCTCTCTCTT+GGG | - | tig0021765:59202-59221 | Msa1393890:intron | 30.0% |
| ! | AATTTTCTGTTCAATTGCTC+TGG | - | tig0021765:59564-59583 | Msa1393890:five_prime_UTR | 30.0% |
| TTCAACGTTAGTTATTACGG+CGG | + | tig0021765:55897-55916 | None:intergenic | 35.0% | |
| ! | AGAGAAAGTGTACTTGGAAT+GGG | + | tig0021765:56040-56059 | None:intergenic | 35.0% |
| TACCAAAGAAATGGAATGGA+GGG | + | tig0021765:56637-56656 | None:intergenic | 35.0% | |
| !! | AATCACCAAAGATTTTGGAG+TGG | - | tig0021765:56869-56888 | Msa1393890:intron | 35.0% |
| ! | GGAGTTTAACTTAGATCGTT+TGG | - | tig0021765:56894-56913 | Msa1393890:intron | 35.0% |
| TGCTCTATAAACATGCTTGA+AGG | - | tig0021765:57004-57023 | Msa1393890:intron | 35.0% | |
| !! | TTGTGAATTTGTTGAGTGTG+AGG | - | tig0021765:57111-57130 | Msa1393890:intron | 35.0% |
| !! | TGTGAATTTGTTGAGTGTGA+GGG | - | tig0021765:57112-57131 | Msa1393890:intron | 35.0% |
| ! | AAACAAACAAGCGTTGTATG+GGG | + | tig0021765:57144-57163 | None:intergenic | 35.0% |
| ! | CAAACAAACAAGCGTTGTAT+GGG | + | tig0021765:57145-57164 | None:intergenic | 35.0% |
| ! | ACAAACAAACAAGCGTTGTA+TGG | + | tig0021765:57146-57165 | None:intergenic | 35.0% |
| ! | AATATGTACTCTAGCTTCTC+AGG | - | tig0021765:57278-57297 | Msa1393890:CDS | 35.0% |
| TAAGTATACCAACACACACA+CGG | + | tig0021765:57408-57427 | None:intergenic | 35.0% | |
| ATAAGATCTTCTCTAGTACG+TGG | + | tig0021765:57667-57686 | None:intergenic | 35.0% | |
| TCAACAATAACAGCTTGCAA+AGG | + | tig0021765:57702-57721 | None:intergenic | 35.0% | |
| ! | ACGTACAGTTTGAAACAGAT+TGG | - | tig0021765:57811-57830 | Msa1393890:intron | 35.0% |
| ! | TTTTACACAGAAGAGTCATC+AGG | + | tig0021765:57904-57923 | None:intergenic | 35.0% |
| GTGAGAATTAAAGGAGTGAA+AGG | - | tig0021765:57977-57996 | Msa1393890:intron | 35.0% | |
| TTTATATGCCTGATATTGGG+TGG | - | tig0021765:58012-58031 | Msa1393890:intron | 35.0% | |
| TAACAGGTGATACTAAGTGA+TGG | - | tig0021765:58083-58102 | Msa1393890:intron | 35.0% | |
| ! | TAATTTGGAGTTGAACAACC+TGG | - | tig0021765:58136-58155 | Msa1393890:intron | 35.0% |
| AAGAAATGAAGATACAAGCG+CGG | - | tig0021765:58181-58200 | Msa1393890:intron | 35.0% | |
| ACAGTATGAATATGGGGATA+AGG | + | tig0021765:58408-58427 | None:intergenic | 35.0% | |
| CTACTGACAGTATGAATATG+GGG | + | tig0021765:58414-58433 | None:intergenic | 35.0% | |
| GTCAGTAGTTTATACTCTAG+TGG | - | tig0021765:58426-58445 | Msa1393890:intron | 35.0% | |
| TGCTATGATTCACATATCTC+AGG | - | tig0021765:58697-58716 | Msa1393890:intron | 35.0% | |
| TAAAATGCTTGTATCTGCCA+TGG | - | tig0021765:58720-58739 | Msa1393890:intron | 35.0% | |
| AAAATGCTTGTATCTGCCAT+GGG | - | tig0021765:58721-58740 | Msa1393890:intron | 35.0% | |
| GTAATTACACGAACAAGATG+TGG | + | tig0021765:58976-58995 | None:intergenic | 35.0% | |
| ! | TTACGATTCTTTTGAACCAG+AGG | - | tig0021765:58992-59011 | Msa1393890:intron | 35.0% |
| AATGTGGATTCAAGTAGCAA+AGG | - | tig0021765:59015-59034 | Msa1393890:intron | 35.0% | |
| !! | TATTGTAAAGGCACTGATGA+TGG | - | tig0021765:59075-59094 | Msa1393890:CDS | 35.0% |
| GTTAACAATGATGGTTGTGA+TGG | - | tig0021765:59120-59139 | Msa1393890:CDS | 35.0% | |
| ! | CAACTATTTTCTCTCTCTTG+GGG | - | tig0021765:59203-59222 | Msa1393890:intron | 35.0% |
| GATTGTATGACTGCATGTAA+GGG | + | tig0021765:59287-59306 | None:intergenic | 35.0% | |
| TGATTGTATGACTGCATGTA+AGG | + | tig0021765:59288-59307 | None:intergenic | 35.0% | |
| CTAACGTTGAACCAAAATCG+CGG | - | tig0021765:55906-55925 | Msa1393890:three_prime_UTR | 40.0% | |
| GAATAGCAGAGAGAAGATAC+CGG | + | tig0021765:55987-56006 | None:intergenic | 40.0% | |
| ! | TCTCTCTGCTATTCTAGCTA+TGG | - | tig0021765:55993-56012 | Msa1393890:three_prime_UTR | 40.0% |
| ! | GAGAGAAAGTGTACTTGGAA+TGG | + | tig0021765:56041-56060 | None:intergenic | 40.0% |
| ! | GAGAAGAGAGAAAGTGTACT+TGG | + | tig0021765:56046-56065 | None:intergenic | 40.0% |
| ! | CAATTTCAATTTAGGGCGTG+CGG | - | tig0021765:56126-56145 | Msa1393890:CDS | 40.0% |
| TTACAGGTGTGGAAAGACAA+TGG | + | tig0021765:56194-56213 | None:intergenic | 40.0% | |
| !! | ACTCAAGTTGAGTCTGATCA+TGG | - | tig0021765:56349-56368 | Msa1393890:CDS | 40.0% |
| AGCATGTGCAGCTAGAAAAA+GGG | + | tig0021765:56458-56477 | None:intergenic | 40.0% | |
| AAGCATGTGCAGCTAGAAAA+AGG | + | tig0021765:56459-56478 | None:intergenic | 40.0% | |
| !!! | TTTTTCTAGCTGCACATGCT+TGG | - | tig0021765:56458-56477 | Msa1393890:CDS | 40.0% |
| CTACCAAAGAAATGGAATGG+AGG | + | tig0021765:56638-56657 | None:intergenic | 40.0% | |
| !!! | ACCAAAGATTTTGGAGTGGA+GGG | - | tig0021765:56873-56892 | Msa1393890:intron | 40.0% |
| !! | TCGTTTGGCTTACCTTTTGT+TGG | - | tig0021765:56909-56928 | Msa1393890:intron | 40.0% |
| AACATGCTTGAAGGTGATAC+TGG | - | tig0021765:57013-57032 | Msa1393890:intron | 40.0% | |
| ACATGCTTGAAGGTGATACT+GGG | - | tig0021765:57014-57033 | Msa1393890:intron | 40.0% | |
| ATCTTTAAACCCTGCTTGTC+TGG | - | tig0021765:57206-57225 | Msa1393890:intron | 40.0% | |
| !!! | GCCATCAAGTCTGTTTTTGT+CGG | - | tig0021765:57495-57514 | Msa1393890:intron | 40.0% |
| TCCGACAAAAACAGACTTGA+TGG | + | tig0021765:57499-57518 | None:intergenic | 40.0% | |
| AACTGTACGTAAGTGCAACA+TGG | + | tig0021765:57801-57820 | None:intergenic | 40.0% | |
| ! | AGTTTGAAACAGATTGGCTC+TGG | - | tig0021765:57817-57836 | Msa1393890:intron | 40.0% |
| AGCTCATGTGAAAGCTTCTA+AGG | - | tig0021765:57864-57883 | Msa1393890:intron | 40.0% | |
| AACAACCTGGATGTTGAAAC+TGG | - | tig0021765:58149-58168 | Msa1393890:intron | 40.0% | |
| CAATGATACCTGGTGTAGAT+TGG | - | tig0021765:58572-58591 | Msa1393890:intron | 40.0% | |
| CTGGCATGATATCTTGTAGT+TGG | + | tig0021765:58763-58782 | None:intergenic | 40.0% | |
| ! | TCTTTTGAACCAGAGGAATG+TGG | - | tig0021765:58999-59018 | Msa1393890:intron | 40.0% |
| TACTTGAATCCACATTCCTC+TGG | + | tig0021765:59011-59030 | None:intergenic | 40.0% | |
| !! | CAAGTTCACATTTTGGAGAG+AGG | + | tig0021765:59041-59060 | None:intergenic | 40.0% |
| ACACATGCAATATAAGCCAC+CGG | + | tig0021765:59162-59181 | None:intergenic | 40.0% | |
| CAGTTAGGTCCTCAATACAA+AGG | + | tig0021765:59239-59258 | None:intergenic | 40.0% | |
| TTGGCTTCAGTGATTCAGTT+AGG | + | tig0021765:59254-59273 | None:intergenic | 40.0% | |
| AACTGAATCACTGAAGCCAA+TGG | - | tig0021765:59254-59273 | Msa1393890:intron | 40.0% | |
| CAGTAAGGTGATAACTTCGA+AGG | - | tig0021765:59357-59376 | Msa1393890:intron | 40.0% | |
| AGAGAAGATACCGGCAACAA+GGG | + | tig0021765:55978-55997 | None:intergenic | 45.0% | |
| GGAATGGGAGATTAAGCAGT+CGG | + | tig0021765:56025-56044 | None:intergenic | 45.0% | |
| CTCCCTCCATTCCATTTCTT+TGG | - | tig0021765:56632-56651 | Msa1393890:intron | 45.0% | |
| !!! | CACCAAAGATTTTGGAGTGG+AGG | - | tig0021765:56872-56891 | Msa1393890:intron | 45.0% |
| TCCCTCCACTCCAAAATCTT+TGG | + | tig0021765:56877-56896 | None:intergenic | 45.0% | |
| CTCAAAACACCAGACAAGCA+GGG | + | tig0021765:57218-57237 | None:intergenic | 45.0% | |
| ACTCAAAACACCAGACAAGC+AGG | + | tig0021765:57219-57238 | None:intergenic | 45.0% | |
| CACACGGCATCTGCATATTT+AGG | + | tig0021765:57392-57411 | None:intergenic | 45.0% | |
| GGTTGTGCAGATGCTCAATA+TGG | - | tig0021765:57473-57492 | Msa1393890:intron | 45.0% | |
| !! | AAACAGATTGGCTCTGGAGT+TGG | - | tig0021765:57823-57842 | Msa1393890:intron | 45.0% |
| ! | TAAAGGAGTGAAAGGTGCAC+TGG | - | tig0021765:57985-58004 | Msa1393890:intron | 45.0% |
| CAATAGCACCACCCAATATC+AGG | + | tig0021765:58023-58042 | None:intergenic | 45.0% | |
| ! | TGCTTGCATAGACTGCGTTT+TGG | - | tig0021765:58212-58231 | Msa1393890:intron | 45.0% |
| GGTAGCTCCTACTATGATTG+TGG | - | tig0021765:58448-58467 | Msa1393890:CDS | 45.0% | |
| ATGCAGATCCAATCTACACC+AGG | + | tig0021765:58583-58602 | None:intergenic | 45.0% | |
| CTTTCTGATGCAGATTCCCA+TGG | + | tig0021765:58740-58759 | None:intergenic | 45.0% | |
| TTACACGAACAAGATGTGGC+AGG | + | tig0021765:58972-58991 | None:intergenic | 45.0% | |
| ! | CCTCAATACAAAGGTTAGCC+TGG | + | tig0021765:59230-59249 | None:intergenic | 45.0% |
| CCAGGCTAACCTTTGTATTG+AGG | - | tig0021765:59227-59246 | Msa1393890:intron | 45.0% | |
| ATGTAAGGGAGGAGAACCAT+TGG | + | tig0021765:59273-59292 | None:intergenic | 45.0% | |
| TGTATGACTGCATGTAAGGG+AGG | + | tig0021765:59284-59303 | None:intergenic | 45.0% | |
| CAATCTACTCACGATGTCGA+AGG | + | tig0021765:59384-59403 | None:intergenic | 45.0% | |
| ACGTTGAACCAAAATCGCGG+TGG | - | tig0021765:55909-55928 | Msa1393890:three_prime_UTR | 50.0% | |
| ACCAAAATCGCGGTGGAGTT+TGG | - | tig0021765:55916-55935 | Msa1393890:three_prime_UTR | 50.0% | |
| ! | TCCAAACTCCACCGCGATTT+TGG | + | tig0021765:55920-55939 | None:intergenic | 50.0% |
| ! | GGAGTTTGGAAGCATGGCTA+CGG | - | tig0021765:55930-55949 | Msa1393890:three_prime_UTR | 50.0% |
| GAGAGAAGATACCGGCAACA+AGG | + | tig0021765:55979-55998 | None:intergenic | 50.0% | |
| TGGGAGATTAAGCAGTCGGA+AGG | + | tig0021765:56021-56040 | None:intergenic | 50.0% | |
| GTGCGGTGAAGGCTCAATTA+CGG | - | tig0021765:56143-56162 | Msa1393890:CDS | 50.0% | |
| CCTGGATGTTGAAACTGGCT+CGG | - | tig0021765:58154-58173 | Msa1393890:intron | 50.0% | |
| ACAAGATGTGGCAGGCAAAC+TGG | + | tig0021765:58964-58983 | None:intergenic | 50.0% | |
| !! | AGGCACTGATGATGGATCTG+AGG | - | tig0021765:59083-59102 | Msa1393890:CDS | 50.0% |
| !! | GGCACTGATGATGGATCTGA+GGG | - | tig0021765:59084-59103 | Msa1393890:CDS | 50.0% |
| ! | TTTTCTCTCTCTTGGGGACC+AGG | - | tig0021765:59209-59228 | Msa1393890:intron | 50.0% |
| ATCCCTCTCTCCCTTGTTGC+CGG | - | tig0021765:55965-55984 | Msa1393890:three_prime_UTR | 55.0% | |
| TACCGGCAACAAGGGAGAGA+GGG | + | tig0021765:55970-55989 | None:intergenic | 55.0% | |
| ATACCGGCAACAAGGGAGAG+AGG | + | tig0021765:55971-55990 | None:intergenic | 55.0% | |
| ! | CAATTTAGGGCGTGCGGTGA+AGG | - | tig0021765:56132-56151 | Msa1393890:CDS | 55.0% |
| GTCTGATCATGGCTCCGTCT+TGG | - | tig0021765:56360-56379 | Msa1393890:CDS | 55.0% | |
| TGCAGATGCCGTGTGTGTGT+TGG | - | tig0021765:57397-57416 | Msa1393890:intron | 55.0% | |
| !! | GGCTCTGGAGTTGGCTTAGT+TGG | - | tig0021765:57832-57851 | Msa1393890:intron | 55.0% |
| CCGAGCCAGTTTCAACATCC+AGG | + | tig0021765:58157-58176 | None:intergenic | 55.0% | |
| TGGTTGTGATGGCCAGCCAA+AGG | - | tig0021765:59131-59150 | Msa1393890:CDS | 55.0% | |
| TAAGCCACCGGTGCTTCCTT+TGG | + | tig0021765:59150-59169 | None:intergenic | 55.0% | |
| CGCGGTGGAGTTTGGAAGCA+TGG | - | tig0021765:55924-55943 | Msa1393890:three_prime_UTR | 60.0% | |
| CATGGCTACGGAGCAAGCAC+TGG | - | tig0021765:55942-55961 | Msa1393890:three_prime_UTR | 60.0% | |
| ! | TGGCCAGCCAAAGGAAGCAC+CGG | - | tig0021765:59140-59159 | Msa1393890:CDS | 60.0% |
| CCACCGGTGCTTCCTTTGGC+TGG | + | tig0021765:59146-59165 | None:intergenic | 65.0% | |
| !! | CCAGCCAAAGGAAGCACCGG+TGG | - | tig0021765:59143-59162 | Msa1393890:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0021765 | gene | 55870 | 59597 | 55870 | ID=Msa1393890;Name=Msa1393890 |
| tig0021765 | mRNA | 55870 | 59597 | 55870 | ID=Msa1393890-mRNA-1;Parent=Msa1393890;Name=Msa1393890-mRNA-1;_AED=0.31;_eAED=0.31;_QI=73|1|1|1|1|1|10|235|401 |
| tig0021765 | exon | 55870 | 56531 | 55870 | ID=Msa1393890-mRNA-1:exon:14135;Parent=Msa1393890-mRNA-1 |
| tig0021765 | exon | 56678 | 56748 | 56678 | ID=Msa1393890-mRNA-1:exon:14134;Parent=Msa1393890-mRNA-1 |
| tig0021765 | exon | 57265 | 57378 | 57265 | ID=Msa1393890-mRNA-1:exon:14133;Parent=Msa1393890-mRNA-1 |
| tig0021765 | exon | 57582 | 57638 | 57582 | ID=Msa1393890-mRNA-1:exon:14132;Parent=Msa1393890-mRNA-1 |
| tig0021765 | exon | 57900 | 57984 | 57900 | ID=Msa1393890-mRNA-1:exon:14131;Parent=Msa1393890-mRNA-1 |
| tig0021765 | exon | 58432 | 58519 | 58432 | ID=Msa1393890-mRNA-1:exon:14130;Parent=Msa1393890-mRNA-1 |
| tig0021765 | exon | 58876 | 58939 | 58876 | ID=Msa1393890-mRNA-1:exon:14129;Parent=Msa1393890-mRNA-1 |
| tig0021765 | exon | 59041 | 59166 | 59041 | ID=Msa1393890-mRNA-1:exon:14128;Parent=Msa1393890-mRNA-1 |
| tig0021765 | exon | 59258 | 59327 | 59258 | ID=Msa1393890-mRNA-1:exon:14127;Parent=Msa1393890-mRNA-1 |
| tig0021765 | exon | 59421 | 59597 | 59421 | ID=Msa1393890-mRNA-1:exon:14126;Parent=Msa1393890-mRNA-1 |
| tig0021765 | five_prime_UTR | 59525 | 59597 | 59525 | ID=Msa1393890-mRNA-1:five_prime_utr;Parent=Msa1393890-mRNA-1 |
| tig0021765 | CDS | 59421 | 59524 | 59421 | ID=Msa1393890-mRNA-1:cds;Parent=Msa1393890-mRNA-1 |
| tig0021765 | CDS | 59258 | 59327 | 59258 | ID=Msa1393890-mRNA-1:cds;Parent=Msa1393890-mRNA-1 |
| tig0021765 | CDS | 59041 | 59166 | 59041 | ID=Msa1393890-mRNA-1:cds;Parent=Msa1393890-mRNA-1 |
| tig0021765 | CDS | 58876 | 58939 | 58876 | ID=Msa1393890-mRNA-1:cds;Parent=Msa1393890-mRNA-1 |
| tig0021765 | CDS | 58432 | 58519 | 58432 | ID=Msa1393890-mRNA-1:cds;Parent=Msa1393890-mRNA-1 |
| tig0021765 | CDS | 57900 | 57984 | 57900 | ID=Msa1393890-mRNA-1:cds;Parent=Msa1393890-mRNA-1 |
| tig0021765 | CDS | 57582 | 57638 | 57582 | ID=Msa1393890-mRNA-1:cds;Parent=Msa1393890-mRNA-1 |
| tig0021765 | CDS | 57265 | 57378 | 57265 | ID=Msa1393890-mRNA-1:cds;Parent=Msa1393890-mRNA-1 |
| tig0021765 | CDS | 56678 | 56748 | 56678 | ID=Msa1393890-mRNA-1:cds;Parent=Msa1393890-mRNA-1 |
| tig0021765 | CDS | 56105 | 56531 | 56105 | ID=Msa1393890-mRNA-1:cds;Parent=Msa1393890-mRNA-1 |
| tig0021765 | three_prime_UTR | 55870 | 56104 | 55870 | ID=Msa1393890-mRNA-1:three_prime_utr;Parent=Msa1393890-mRNA-1 |
| Gene Sequence |
| Protein sequence |
