Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1132210 | RHN53323.1 | 64.644 | 379 | 66 | 8 | 1 | 312 | 1 | 378 | 6.28e-153 | 445 |
| Msa1132210 | RHN53323.1 | 70.988 | 162 | 27 | 5 | 12 | 155 | 221 | 380 | 1.52e-62 | 214 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1132210 | sp|P05332|YP20_BACLI | 31.373 | 153 | 82 | 3 | 21 | 154 | 8 | 156 | 2.64e-13 | 70.5 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1132210 | A0A396HL91 | 64.644 | 379 | 66 | 8 | 1 | 312 | 1 | 378 | 3.00e-153 | 445 |
| Msa1132210 | A0A396HL91 | 70.988 | 162 | 27 | 5 | 12 | 155 | 221 | 380 | 7.25e-63 | 214 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0794350 | Msa1132210 | 0.814282 | 1.667874e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1132210 | MtrunA17_Chr5g0394631 | 64.644 | 379 | 66 | 8 | 1 | 312 | 1 | 378 | 5.77e-157 | 445 |
| Msa1132210 | MtrunA17_Chr5g0394631 | 70.988 | 162 | 27 | 5 | 12 | 155 | 221 | 380 | 1.40e-66 | 214 |
| Msa1132210 | MtrunA17_Chr5g0394621 | 73.964 | 169 | 30 | 1 | 1 | 155 | 1 | 169 | 1.36e-81 | 245 |
| Msa1132210 | MtrunA17_Chr5g0394621 | 65.385 | 182 | 48 | 5 | 155 | 323 | 3 | 182 | 4.15e-68 | 211 |
| Msa1132210 | MtrunA17_Chr1g0204971 | 60.355 | 169 | 53 | 2 | 1 | 155 | 1 | 169 | 1.82e-65 | 204 |
| Msa1132210 | MtrunA17_Chr1g0204971 | 56.627 | 166 | 61 | 5 | 156 | 312 | 4 | 167 | 2.11e-52 | 171 |
| Msa1132210 | MtrunA17_Chr1g0204951 | 61.404 | 171 | 52 | 3 | 1 | 157 | 1 | 171 | 4.83e-65 | 203 |
| Msa1132210 | MtrunA17_Chr1g0204951 | 57.229 | 166 | 60 | 5 | 156 | 312 | 4 | 167 | 7.25e-53 | 172 |
| Msa1132210 | MtrunA17_Chr7g0273661 | 42.282 | 149 | 75 | 1 | 17 | 154 | 4 | 152 | 8.23e-35 | 124 |
| Msa1132210 | MtrunA17_Chr7g0273661 | 40.940 | 149 | 82 | 3 | 169 | 312 | 4 | 151 | 8.85e-27 | 103 |
| Msa1132210 | MtrunA17_Chr7g0223361 | 42.282 | 149 | 74 | 2 | 16 | 153 | 3 | 150 | 1.47e-31 | 116 |
| Msa1132210 | MtrunA17_Chr7g0223361 | 41.611 | 149 | 82 | 2 | 168 | 312 | 3 | 150 | 3.08e-28 | 107 |
| Msa1132210 | MtrunA17_Chr7g0223351 | 39.583 | 144 | 76 | 2 | 20 | 153 | 7 | 149 | 1.24e-28 | 108 |
| Msa1132210 | MtrunA17_Chr7g0223351 | 39.726 | 146 | 80 | 5 | 172 | 312 | 7 | 149 | 9.67e-26 | 101 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1132210 | AT2G32020.1 | 48.276 | 145 | 66 | 1 | 20 | 155 | 18 | 162 | 2.88e-42 | 145 |
| Msa1132210 | AT2G32020.1 | 49.383 | 162 | 70 | 7 | 172 | 324 | 18 | 176 | 3.38e-35 | 126 |
| Msa1132210 | AT2G32030.1 | 46.541 | 159 | 68 | 2 | 6 | 155 | 17 | 167 | 7.06e-42 | 144 |
| Msa1132210 | AT2G32030.1 | 49.068 | 161 | 70 | 7 | 173 | 324 | 24 | 181 | 9.88e-35 | 125 |
| Msa1132210 | AT3G22560.1 | 36.842 | 152 | 83 | 1 | 16 | 154 | 2 | 153 | 3.73e-26 | 102 |
| Msa1132210 | AT3G22560.1 | 34.437 | 151 | 93 | 3 | 168 | 312 | 2 | 152 | 8.97e-20 | 85.5 |
Find 73 sgRNAs with CRISPR-Local
Find 169 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAATCAATGATCTCTTCTT+TGG | 0.196407 | 7_3:-85059458 | None:intergenic |
| AGAATCAAATGTGCAGAAAT+TGG | 0.218349 | 7_3:+85061947 | Msa1132210:CDS |
| GGGAGTTCTTAGGAAGTATT+TGG | 0.241791 | 7_3:+85059903 | Msa1132210:CDS |
| CTCTTCTTTGGCACATGGTT+TGG | 0.246122 | 7_3:-85059446 | None:intergenic |
| ATAATCTAAGCTCTATATAT+TGG | 0.258828 | 7_3:+85059734 | Msa1132210:CDS |
| TCCTAAGAACTCCCTCCTTT+TGG | 0.260104 | 7_3:-85059894 | None:intergenic |
| ATGAAAAGGTAGCCAAGTTC+TGG | 0.273400 | 7_3:+85061780 | Msa1132210:CDS |
| CTCTTCATTGGCACATGGTT+TGG | 0.274557 | 7_3:-85061678 | None:intergenic |
| GCTTCAAGCCTTTCCAAGTA+TGG | 0.276638 | 7_3:-85062055 | None:intergenic |
| ATCAAGGTCAGAAAGATTAA+AGG | 0.290557 | 7_3:-85059500 | None:intergenic |
| TAATCTAAGCTCTATATATT+GGG | 0.291812 | 7_3:+85059735 | Msa1132210:CDS |
| ATGTTCTAGGCTCTAAATAT+TGG | 0.292142 | 7_3:+85061972 | Msa1132210:CDS |
| GTTGATGCCATCTTCTTTGC+TGG | 0.294680 | 7_3:-85059584 | None:intergenic |
| AGGTTCCCATGAGCAGAATT+TGG | 0.303996 | 7_3:-85059557 | None:intergenic |
| TGCTGTGAAACAAATTATTA+AGG | 0.312252 | 7_3:+85059777 | Msa1132210:CDS |
| TGTTCTAGGCTCTAAATATT+GGG | 0.316974 | 7_3:+85061973 | Msa1132210:CDS |
| CCATCTTCTTTGCTGGTGTA+AGG | 0.323803 | 7_3:-85059577 | None:intergenic |
| TTGTTGATGTGGATAATTTA+TGG | 0.328127 | 7_3:+85062080 | Msa1132210:CDS |
| TGCCATAATGATCATGCTAT+TGG | 0.333891 | 7_3:+85061884 | Msa1132210:CDS |
| ACCCAATAGCATGATCATTA+TGG | 0.341789 | 7_3:-85061886 | None:intergenic |
| GCAGAAATTGGGTATGTTCT+AGG | 0.344662 | 7_3:+85061959 | Msa1132210:CDS |
| CAAATCAATGATCTCTTCAT+TGG | 0.363988 | 7_3:-85061690 | None:intergenic |
| CCTTCGTCTTTGCTAGTGTA+AGG | 0.376096 | 7_3:-85061809 | None:intergenic |
| TCTCCAAGTATGAATATTCA+TGG | 0.389310 | 7_3:-85059807 | None:intergenic |
| TCCAAAAGGAGGGAGTTCTT+AGG | 0.394554 | 7_3:+85059893 | Msa1132210:CDS |
| TAAAGGGTCGGAGTGTGATT+TGG | 0.396804 | 7_3:-85059483 | None:intergenic |
| ATTCAGTGAATTTCCATACT+TGG | 0.413337 | 7_3:+85062042 | Msa1132210:CDS |
| CACGTTTGCTGTGAAACAAA+TGG | 0.422199 | 7_3:+85062009 | Msa1132210:CDS |
| AGGAAACAATCTGCAGAACT+TGG | 0.436712 | 7_3:+85059709 | Msa1132210:CDS |
| TTCTGACCTTGATGATGTAA+TGG | 0.440976 | 7_3:+85059510 | Msa1132210:CDS |
| TTCTGACCTTGATGATGTAA+TGG | 0.440976 | 7_3:+85061742 | Msa1132210:CDS |
| CAAAGAGTAGTTCAGAAAGT+TGG | 0.441651 | 7_3:+85062106 | Msa1132210:CDS |
| GAAGATGCCGGAGTGTGATT+TGG | 0.442806 | 7_3:-85061715 | None:intergenic |
| GCTCTAAATATTGGGGCAAA+AGG | 0.450334 | 7_3:+85061981 | Msa1132210:CDS |
| GAATCAAATGTGCAGAAATT+GGG | 0.456981 | 7_3:+85061948 | Msa1132210:CDS |
| TGCTGTGAAACAAATGGTTA+AGG | 0.473285 | 7_3:+85062015 | Msa1132210:CDS |
| TCAAGGTCAGAAAGATTAAA+GGG | 0.477441 | 7_3:-85059499 | None:intergenic |
| GCCATAATGATCATGCTATT+GGG | 0.478546 | 7_3:+85061885 | Msa1132210:CDS |
| TGAAAAGGTAGCCAAGTTCT+GGG | 0.482152 | 7_3:+85061781 | Msa1132210:CDS |
| CTTGTCGATGTTGAAAATGT+TGG | 0.484592 | 7_3:+85059841 | Msa1132210:CDS |
| GTGAATTTCCATACTTGGAA+AGG | 0.490341 | 7_3:+85062047 | Msa1132210:CDS |
| GCTCTATATATTGGGGCAAA+GGG | 0.493310 | 7_3:+85059743 | Msa1132210:CDS |
| ATTCCATGAATATTCATACT+TGG | 0.496142 | 7_3:+85059804 | Msa1132210:CDS |
| CAAAGAGTGTTGGAGAAAGC+TGG | 0.499760 | 7_3:+85059868 | Msa1132210:CDS |
| AGCTCTATATATTGGGGCAA+AGG | 0.501996 | 7_3:+85059742 | Msa1132210:CDS |
| TTGTCGATGTTGAAAATGTT+GGG | 0.503194 | 7_3:+85059842 | Msa1132210:CDS |
| AAGTGGCCAAATTCTGCTCA+TGG | 0.506987 | 7_3:+85059551 | Msa1132210:CDS |
| ATGAATATTCATACTTGGAG+AGG | 0.521655 | 7_3:+85059809 | Msa1132210:CDS |
| ATGATCTCTTCTTTGGCACA+TGG | 0.535452 | 7_3:-85059451 | None:intergenic |
| GGAGAAAGCTGGTTTCCAAA+AGG | 0.547990 | 7_3:+85059879 | Msa1132210:CDS |
| CCTTACACCAGCAAAGAAGA+TGG | 0.560893 | 7_3:+85059577 | Msa1132210:CDS |
| GAAAGCTGGTTTCCAAAAGG+AGG | 0.562242 | 7_3:+85059882 | Msa1132210:CDS |
| TGTTGGGTCACAAAGAGTGT+TGG | 0.566749 | 7_3:+85059858 | Msa1132210:CDS |
| GCTTGAAGCTCTTGTTGATG+TGG | 0.580383 | 7_3:+85062069 | Msa1132210:CDS |
| AGTGGCCAAATTCTGCTCAT+GGG | 0.587068 | 7_3:+85059552 | Msa1132210:CDS |
| AATCTAAGCTCTATATATTG+GGG | 0.593409 | 7_3:+85059736 | Msa1132210:CDS |
| GTGGCAGCAGACTGATGAAA+AGG | 0.594266 | 7_3:+85061766 | Msa1132210:CDS |
| GCCACACCATTACATCATCA+AGG | 0.594693 | 7_3:-85059516 | None:intergenic |
| GCCACACCATTACATCATCA+AGG | 0.594693 | 7_3:-85061748 | None:intergenic |
| GGTCAGAAAGATGAAGATGC+CGG | 0.595451 | 7_3:-85061727 | None:intergenic |
| GGTCAGAAAGATTAAAGGGT+CGG | 0.596865 | 7_3:-85059495 | None:intergenic |
| TCACACCTGAAGATAAAAGC+AGG | 0.598275 | 7_3:+85059689 | Msa1132210:intron |
| ATGATCTCTTCATTGGCACA+TGG | 0.598564 | 7_3:-85061683 | None:intergenic |
| AAAAGGTAGCCAAGTTCTGG+GGG | 0.620200 | 7_3:+85061783 | Msa1132210:CDS |
| GTTCTAGGCTCTAAATATTG+GGG | 0.623891 | 7_3:+85061974 | Msa1132210:CDS |
| GAAAAGGTAGCCAAGTTCTG+GGG | 0.624494 | 7_3:+85061782 | Msa1132210:CDS |
| ATTTGAACCAAATCACACTC+CGG | 0.628218 | 7_3:+85061708 | Msa1132210:CDS |
| AAAGCTGGTTTCCAAAAGGA+GGG | 0.657724 | 7_3:+85059883 | Msa1132210:CDS |
| CATTTGTTTCACAGCAAACG+TGG | 0.659491 | 7_3:-85062008 | None:intergenic |
| ACCTTGATGATGTAATGGTG+TGG | 0.686805 | 7_3:+85059515 | Msa1132210:CDS |
| ACCTTGATGATGTAATGGTG+TGG | 0.697032 | 7_3:+85061747 | Msa1132210:CDS |
| CCTTACACTAGCAAAGACGA+AGG | 0.715657 | 7_3:+85061809 | Msa1132210:CDS |
| AAAGGTAGCCAAGTTCTGGG+GGG | 0.779565 | 7_3:+85061784 | Msa1132210:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTATGTTATTATAATCTATA+AGG | + | chr7_3:85060154-85060173 | Msa1132210:intron | 10.0% |
| !!! | TATATAATTTTTTCAAGTAT+TGG | - | chr7_3:85060209-85060228 | None:intergenic | 10.0% |
| !! | AAGAAAAAAAATATTTCTTA+TGG | - | chr7_3:85060877-85060896 | None:intergenic | 10.0% |
| !!! | TAAGAAATATTTTTTTTCTT+AGG | + | chr7_3:85060877-85060896 | Msa1132210:intron | 10.0% |
| !!! | TTTCACAAATATTATTATTT+TGG | + | chr7_3:85061189-85061208 | Msa1132210:intron | 10.0% |
| !! | AAAATGAAACTTATTAAAGT+TGG | - | chr7_3:85059984-85060003 | None:intergenic | 15.0% |
| !! | CAAAAAAAAATGTAATACAT+CGG | - | chr7_3:85060055-85060074 | None:intergenic | 15.0% |
| !!! | ATTTTTTTTTGTGATATTTG+AGG | + | chr7_3:85060064-85060083 | Msa1132210:intron | 15.0% |
| !!! | TTTTAATTGTAATCAAAATC+AGG | - | chr7_3:85060240-85060259 | None:intergenic | 15.0% |
| !!! | TTTTTAACATCATATAGTAT+CGG | + | chr7_3:85060624-85060643 | Msa1132210:intron | 15.0% |
| !!! | AAATATTTTTTTTCTTAGGT+GGG | + | chr7_3:85060881-85060900 | Msa1132210:intron | 15.0% |
| !!! | TTTTATTTCATTCTAAATCT+TGG | - | chr7_3:85061072-85061091 | None:intergenic | 15.0% |
| !! | AGAATGAAATAAAATAACTT+AGG | + | chr7_3:85061078-85061097 | Msa1132210:intron | 15.0% |
| !! | TTATGGTAATATATTAACAA+TGG | + | chr7_3:85061225-85061244 | Msa1132210:intron | 15.0% |
| !!! | GTTTCTTTTATGAATTAATT+TGG | - | chr7_3:85061631-85061650 | None:intergenic | 15.0% |
| !! | ATAATCTAAGCTCTATATAT+TGG | + | chr7_3:85059734-85059753 | Msa1132210:CDS | 20.0% |
| !! | TAATCTAAGCTCTATATATT+GGG | + | chr7_3:85059735-85059754 | Msa1132210:CDS | 20.0% |
| !! | AAAGTTAAAACACAATCTTA+GGG | + | chr7_3:85060122-85060141 | Msa1132210:intron | 20.0% |
| !!! | ATCAAAGGTATATAAAATTG+TGG | + | chr7_3:85060335-85060354 | Msa1132210:intron | 20.0% |
| !!! | TAGTATCGGTATTAAAAAAA+AGG | + | chr7_3:85060638-85060657 | Msa1132210:intron | 20.0% |
| !!! | GAAATATTTTTTTTCTTAGG+TGG | + | chr7_3:85060880-85060899 | Msa1132210:intron | 20.0% |
| !!! | TAAAAATGGTTTTCAATTGT+TGG | + | chr7_3:85061033-85061052 | Msa1132210:intron | 20.0% |
| !! | TAAAATAACTTAGGTAACAT+AGG | + | chr7_3:85061087-85061106 | Msa1132210:intron | 20.0% |
| !! | AAAATAACTTAGGTAACATA+GGG | + | chr7_3:85061088-85061107 | Msa1132210:intron | 20.0% |
| !!! | ATGGATGATTTTTTCTTTTT+TGG | + | chr7_3:85061244-85061263 | Msa1132210:intron | 20.0% |
| !! | TTCATAAAAGAAACAAGTTA+TGG | + | chr7_3:85061637-85061656 | Msa1132210:intron | 20.0% |
| ! | AATCTAAGCTCTATATATTG+GGG | + | chr7_3:85059736-85059755 | Msa1132210:CDS | 25.0% |
| ! | TGCTGTGAAACAAATTATTA+AGG | + | chr7_3:85059777-85059796 | Msa1132210:CDS | 25.0% |
| ! | ATTCCATGAATATTCATACT+TGG | + | chr7_3:85059804-85059823 | Msa1132210:CDS | 25.0% |
| ! | CAAAGTTAAAACACAATCTT+AGG | + | chr7_3:85060121-85060140 | Msa1132210:intron | 25.0% |
| ! | AAATATCTCGTGAAATCTAT+TGG | + | chr7_3:85060571-85060590 | Msa1132210:intron | 25.0% |
| !! | ATTCATTACTTGTTGCTTAT+CGG | + | chr7_3:85060706-85060725 | Msa1132210:intron | 25.0% |
| ! | AAACAACTCTAATTAAGAGA+CGG | - | chr7_3:85060935-85060954 | None:intergenic | 25.0% |
| ! | AAATAACTTAGGTAACATAG+GGG | + | chr7_3:85061089-85061108 | Msa1132210:intron | 25.0% |
| ! | AACTTGTCCAAAAATAACTT+AGG | + | chr7_3:85061116-85061135 | Msa1132210:intron | 25.0% |
| !!! | TCTAACACCTAAGTTATTTT+TGG | - | chr7_3:85061126-85061145 | None:intergenic | 25.0% |
| ! | GACTTGAATATGCATTAAAT+GGG | - | chr7_3:85061396-85061415 | None:intergenic | 25.0% |
| ! | TGACTTGAATATGCATTAAA+TGG | - | chr7_3:85061397-85061416 | None:intergenic | 25.0% |
| !!! | GAATTGAAGTGTTGAATTTT+AGG | - | chr7_3:85061557-85061576 | None:intergenic | 25.0% |
| !!! | ACAACAAGTGTTTATTTTCT+AGG | - | chr7_3:85061602-85061621 | None:intergenic | 25.0% |
| ! | TTGTTGATGTGGATAATTTA+TGG | + | chr7_3:85062080-85062099 | Msa1132210:CDS | 25.0% |
| !!! | AAAGTTGGTTTTCAAAAAGA+GGG | + | chr7_3:85062121-85062140 | Msa1132210:CDS | 25.0% |
| !! | AGGAAGTATGTATTCTTTAA+AGG | + | chr7_3:85062151-85062170 | Msa1132210:intron | 25.0% |
| CAAATCAATGATCTCTTCTT+TGG | - | chr7_3:85059461-85059480 | None:intergenic | 30.0% | |
| TCAAGGTCAGAAAGATTAAA+GGG | - | chr7_3:85059502-85059521 | None:intergenic | 30.0% | |
| ATCAAGGTCAGAAAGATTAA+AGG | - | chr7_3:85059503-85059522 | None:intergenic | 30.0% | |
| TCTCCAAGTATGAATATTCA+TGG | - | chr7_3:85059810-85059829 | None:intergenic | 30.0% | |
| ATGAATATTCATACTTGGAG+AGG | + | chr7_3:85059809-85059828 | Msa1132210:CDS | 30.0% | |
| TTGTCGATGTTGAAAATGTT+GGG | + | chr7_3:85059842-85059861 | Msa1132210:CDS | 30.0% | |
| ! | GTTACTTTCCTTTCTTAACA+AGG | - | chr7_3:85060094-85060113 | None:intergenic | 30.0% |
| TGTTAAGAAAGGAAAGTAAC+AGG | + | chr7_3:85060094-85060113 | Msa1132210:intron | 30.0% | |
| TATATACCTTTGATCTTCCT+AGG | - | chr7_3:85060329-85060348 | None:intergenic | 30.0% | |
| GATAAATCTAAGTTGTGCTT+TGG | - | chr7_3:85060684-85060703 | None:intergenic | 30.0% | |
| ! | TATTTCTAACTCTACAGACA+AGG | + | chr7_3:85060779-85060798 | Msa1132210:intron | 30.0% |
| ! | ATCGTGTTATTCATAGATGA+TGG | + | chr7_3:85060976-85060995 | Msa1132210:intron | 30.0% |
| ! | TCGTGTTATTCATAGATGAT+GGG | + | chr7_3:85060977-85060996 | Msa1132210:intron | 30.0% |
| !! | GGTTTTCAATTGTTGGTTAT+TGG | + | chr7_3:85061040-85061059 | Msa1132210:intron | 30.0% |
| ! | TTCAATTGTTGGTTATTGGA+TGG | + | chr7_3:85061044-85061063 | Msa1132210:intron | 30.0% |
| TTGGTTAATTGCGATGATTA+TGG | + | chr7_3:85061208-85061227 | Msa1132210:intron | 30.0% | |
| CTAGGCTATTTATAAAGTCA+TGG | - | chr7_3:85061584-85061603 | None:intergenic | 30.0% | |
| CAAATCAATGATCTCTTCAT+TGG | - | chr7_3:85061693-85061712 | None:intergenic | 30.0% | |
| AGAATCAAATGTGCAGAAAT+TGG | + | chr7_3:85061947-85061966 | Msa1132210:CDS | 30.0% | |
| GAATCAAATGTGCAGAAATT+GGG | + | chr7_3:85061948-85061967 | Msa1132210:CDS | 30.0% | |
| !! | ATGTTCTAGGCTCTAAATAT+TGG | + | chr7_3:85061972-85061991 | Msa1132210:CDS | 30.0% |
| !! | TGTTCTAGGCTCTAAATATT+GGG | + | chr7_3:85061973-85061992 | Msa1132210:CDS | 30.0% |
| ATTCAGTGAATTTCCATACT+TGG | + | chr7_3:85062042-85062061 | Msa1132210:CDS | 30.0% | |
| !!! | GAAAGTTGGTTTTCAAAAAG+AGG | + | chr7_3:85062120-85062139 | Msa1132210:CDS | 30.0% |
| !! | TTCTGACCTTGATGATGTAA+TGG | + | chr7_3:85059510-85059529 | Msa1132210:CDS | 35.0% |
| !! | TGTTTCCTGCTTTTATCTTC+AGG | - | chr7_3:85059697-85059716 | None:intergenic | 35.0% |
| CTTGTCGATGTTGAAAATGT+TGG | + | chr7_3:85059841-85059860 | Msa1132210:CDS | 35.0% | |
| !! | AGGAAGTATTTGGTCATGAA+AGG | + | chr7_3:85059913-85059932 | Msa1132210:intron | 35.0% |
| TTCATGTATGTGAGCTTCAT+AGG | + | chr7_3:85061363-85061382 | Msa1132210:intron | 35.0% | |
| ATGCATATTCAAGTCAACCA+TGG | + | chr7_3:85061401-85061420 | Msa1132210:intron | 35.0% | |
| TAGAGTTAAAGGAAGTTGCA+CGG | - | chr7_3:85061495-85061514 | None:intergenic | 35.0% | |
| TTAGGCTATTTACAGAGTCT+TGG | - | chr7_3:85061539-85061558 | None:intergenic | 35.0% | |
| GGCTATTTATAAAGTCATGG+AGG | - | chr7_3:85061581-85061600 | None:intergenic | 35.0% | |
| ATTTGAACCAAATCACACTC+CGG | + | chr7_3:85059476-85059495 | Msa1132210:CDS | 35.0% | |
| !! | TTCTGACCTTGATGATGTAA+TGG | + | chr7_3:85059510-85059529 | Msa1132210:CDS | 35.0% |
| TGCCATAATGATCATGCTAT+TGG | + | chr7_3:85061884-85061903 | Msa1132210:CDS | 35.0% | |
| GCCATAATGATCATGCTATT+GGG | + | chr7_3:85061885-85061904 | Msa1132210:CDS | 35.0% | |
| ACCCAATAGCATGATCATTA+TGG | - | chr7_3:85061889-85061908 | None:intergenic | 35.0% | |
| !! | GTTCTAGGCTCTAAATATTG+GGG | + | chr7_3:85061974-85061993 | Msa1132210:CDS | 35.0% |
| TGCTGTGAAACAAATGGTTA+AGG | + | chr7_3:85062015-85062034 | Msa1132210:CDS | 35.0% | |
| GTGAATTTCCATACTTGGAA+AGG | + | chr7_3:85062047-85062066 | Msa1132210:CDS | 35.0% | |
| CAAAGAGTAGTTCAGAAAGT+TGG | + | chr7_3:85062106-85062125 | Msa1132210:CDS | 35.0% | |
| TTCAAAAAGAGGGAGTTCTT+AGG | + | chr7_3:85062131-85062150 | Msa1132210:CDS | 35.0% | |
| ATGATCTCTTCTTTGGCACA+TGG | - | chr7_3:85059454-85059473 | None:intergenic | 40.0% | |
| GGTCAGAAAGATTAAAGGGT+CGG | - | chr7_3:85059498-85059517 | None:intergenic | 40.0% | |
| !! | ACCTTGATGATGTAATGGTG+TGG | + | chr7_3:85059515-85059534 | Msa1132210:CDS | 40.0% |
| GTGGCATACTGATGAAAAAG+TGG | + | chr7_3:85059534-85059553 | Msa1132210:CDS | 40.0% | |
| ! | TGCATTGATGATCGTGCTAT+TGG | + | chr7_3:85059652-85059671 | Msa1132210:intron | 40.0% |
| TCACACCTGAAGATAAAAGC+AGG | + | chr7_3:85059689-85059708 | Msa1132210:intron | 40.0% | |
| AGGAAACAATCTGCAGAACT+TGG | + | chr7_3:85059709-85059728 | Msa1132210:CDS | 40.0% | |
| AGCTCTATATATTGGGGCAA+AGG | + | chr7_3:85059742-85059761 | Msa1132210:CDS | 40.0% | |
| GCTCTATATATTGGGGCAAA+GGG | + | chr7_3:85059743-85059762 | Msa1132210:CDS | 40.0% | |
| ! | AAAGCTGGTTTCCAAAAGGA+GGG | + | chr7_3:85059883-85059902 | Msa1132210:CDS | 40.0% |
| !! | GGGAGTTCTTAGGAAGTATT+TGG | + | chr7_3:85059903-85059922 | Msa1132210:CDS | 40.0% |
| ! | GAGGTTTGCCTTGTTAAGAA+AGG | + | chr7_3:85060083-85060102 | Msa1132210:intron | 40.0% |
| CTGCTTATGCTTATGTCTAG+AGG | + | chr7_3:85060179-85060198 | Msa1132210:intron | 40.0% | |
| ATGCATCCTAGGAAGATCAA+AGG | + | chr7_3:85060320-85060339 | Msa1132210:intron | 40.0% | |
| ACTTTGTAGAGAGCAGAAAC+AGG | - | chr7_3:85060474-85060493 | None:intergenic | 40.0% | |
| !!! | TTTTTTTCTTAGGTGGGTCG+CGG | + | chr7_3:85060887-85060906 | Msa1132210:intron | 40.0% |
| GGAGTTTCTCATAAACAGCA+TGG | - | chr7_3:85060914-85060933 | None:intergenic | 40.0% | |
| GTATGTGAGCTTCATAGGTT+TGG | + | chr7_3:85061368-85061387 | Msa1132210:intron | 40.0% | |
| AAGGGAAGTAAGGGATTTCA+AGG | - | chr7_3:85061441-85061460 | None:intergenic | 40.0% | |
| GGAAGATCGAGTAGAGTTAA+AGG | - | chr7_3:85061506-85061525 | None:intergenic | 40.0% | |
| CAGAGTCTTGGAGATGAAAA+AGG | - | chr7_3:85061527-85061546 | None:intergenic | 40.0% | |
| ATGATCTCTTCATTGGCACA+TGG | - | chr7_3:85061686-85061705 | None:intergenic | 40.0% | |
| !! | ACCTTGATGATGTAATGGTG+TGG | + | chr7_3:85059515-85059534 | Msa1132210:CDS | 40.0% |
| ATGAAAAGGTAGCCAAGTTC+TGG | + | chr7_3:85061780-85061799 | Msa1132210:CDS | 40.0% | |
| TGAAAAGGTAGCCAAGTTCT+GGG | + | chr7_3:85061781-85061800 | Msa1132210:CDS | 40.0% | |
| GCAGAAATTGGGTATGTTCT+AGG | + | chr7_3:85061959-85061978 | Msa1132210:CDS | 40.0% | |
| ! | GCTCTAAATATTGGGGCAAA+AGG | + | chr7_3:85061981-85062000 | Msa1132210:CDS | 40.0% |
| CATTTGTTTCACAGCAAACG+TGG | - | chr7_3:85062011-85062030 | None:intergenic | 40.0% | |
| !! | CACGTTTGCTGTGAAACAAA+TGG | + | chr7_3:85062009-85062028 | Msa1132210:CDS | 40.0% |
| CTCTTCTTTGGCACATGGTT+TGG | - | chr7_3:85059449-85059468 | None:intergenic | 45.0% | |
| TAAAGGGTCGGAGTGTGATT+TGG | - | chr7_3:85059486-85059505 | None:intergenic | 45.0% | |
| GCCACACCATTACATCATCA+AGG | - | chr7_3:85059519-85059538 | None:intergenic | 45.0% | |
| AAGTGGCCAAATTCTGCTCA+TGG | + | chr7_3:85059551-85059570 | Msa1132210:CDS | 45.0% | |
| AGTGGCCAAATTCTGCTCAT+GGG | + | chr7_3:85059552-85059571 | Msa1132210:CDS | 45.0% | |
| AGGTTCCCATGAGCAGAATT+TGG | - | chr7_3:85059560-85059579 | None:intergenic | 45.0% | |
| CCATCTTCTTTGCTGGTGTA+AGG | - | chr7_3:85059580-85059599 | None:intergenic | 45.0% | |
| CCTTACACCAGCAAAGAAGA+TGG | + | chr7_3:85059577-85059596 | Msa1132210:CDS | 45.0% | |
| GTTGATGCCATCTTCTTTGC+TGG | - | chr7_3:85059587-85059606 | None:intergenic | 45.0% | |
| ! | TGTTGGGTCACAAAGAGTGT+TGG | + | chr7_3:85059858-85059877 | Msa1132210:CDS | 45.0% |
| !! | CAAAGAGTGTTGGAGAAAGC+TGG | + | chr7_3:85059868-85059887 | Msa1132210:CDS | 45.0% |
| ! | GGAGAAAGCTGGTTTCCAAA+AGG | + | chr7_3:85059879-85059898 | Msa1132210:CDS | 45.0% |
| ! | GAAAGCTGGTTTCCAAAAGG+AGG | + | chr7_3:85059882-85059901 | Msa1132210:CDS | 45.0% |
| TCCAAAAGGAGGGAGTTCTT+AGG | + | chr7_3:85059893-85059912 | Msa1132210:CDS | 45.0% | |
| ! | TCCTAAGAACTCCCTCCTTT+TGG | - | chr7_3:85059897-85059916 | None:intergenic | 45.0% |
| GATCTTCCTAGGATGCATGT+TGG | - | chr7_3:85060318-85060337 | None:intergenic | 45.0% | |
| GGATGGATAGGCATCACTTA+CGG | - | chr7_3:85060453-85060472 | None:intergenic | 45.0% | |
| AGAGCAGAAACAGGATGGAT+AGG | - | chr7_3:85060465-85060484 | None:intergenic | 45.0% | |
| TGTAGAGAGCAGAAACAGGA+TGG | - | chr7_3:85060470-85060489 | None:intergenic | 45.0% | |
| AGGTTGCTTCATGTCTACCA+TGG | - | chr7_3:85061421-85061440 | None:intergenic | 45.0% | |
| ACGCAAGGAAAGGGAAGTAA+GGG | - | chr7_3:85061450-85061469 | None:intergenic | 45.0% | |
| GTTAGGATCACGCAAGGAAA+GGG | - | chr7_3:85061459-85061478 | None:intergenic | 45.0% | |
| AGTTAGGATCACGCAAGGAA+AGG | - | chr7_3:85061460-85061479 | None:intergenic | 45.0% | |
| ACGGAAGAAAGGTCGAAGTT+AGG | - | chr7_3:85061476-85061495 | None:intergenic | 45.0% | |
| AAGGAAGTTGCACGGAAGAA+AGG | - | chr7_3:85061487-85061506 | None:intergenic | 45.0% | |
| CTCTTCATTGGCACATGGTT+TGG | - | chr7_3:85061681-85061700 | None:intergenic | 45.0% | |
| GGTCAGAAAGATGAAGATGC+CGG | - | chr7_3:85061730-85061749 | None:intergenic | 45.0% | |
| GCCACACCATTACATCATCA+AGG | - | chr7_3:85059519-85059538 | None:intergenic | 45.0% | |
| GAAAAGGTAGCCAAGTTCTG+GGG | + | chr7_3:85061782-85061801 | Msa1132210:CDS | 45.0% | |
| ! | AAAAGGTAGCCAAGTTCTGG+GGG | + | chr7_3:85061783-85061802 | Msa1132210:CDS | 45.0% |
| CCTTCGTCTTTGCTAGTGTA+AGG | - | chr7_3:85061812-85061831 | None:intergenic | 45.0% | |
| CCTTACACTAGCAAAGACGA+AGG | + | chr7_3:85061809-85061828 | Msa1132210:CDS | 45.0% | |
| GCTTCAAGCCTTTCCAAGTA+TGG | - | chr7_3:85062058-85062077 | None:intergenic | 45.0% | |
| GCTTGAAGCTCTTGTTGATG+TGG | + | chr7_3:85062069-85062088 | Msa1132210:CDS | 45.0% | |
| !!! | TAATTTTTTTAAAACAAAAA+AGG | + | chr7_3:85060836-85060855 | Msa1132210:intron | 5.0% |
| !!! | AATTTTTTTAAAACAAAAAA+GGG | + | chr7_3:85060837-85060856 | Msa1132210:intron | 5.0% |
| !!! | TTTTTAATAAATTATTGATT+TGG | - | chr7_3:85061019-85061038 | None:intergenic | 5.0% |
| !! | AATCAATAATTTATTAAAAA+TGG | + | chr7_3:85061019-85061038 | Msa1132210:intron | 5.0% |
| TGGATAGGCATCACTTACGG+TGG | - | chr7_3:85060450-85060469 | None:intergenic | 50.0% | |
| TTCAAGAGATGCCTTGTGCG+AGG | - | chr7_3:85060512-85060531 | None:intergenic | 50.0% | |
| !! | GGTTGAGTGTCGACACAGTA+TGG | + | chr7_3:85060800-85060819 | Msa1132210:intron | 50.0% |
| !! | TGAGTGTCGACACAGTATGG+AGG | + | chr7_3:85060803-85060822 | Msa1132210:intron | 50.0% |
| TCGACACAGTATGGAGGCAA+TGG | + | chr7_3:85060809-85060828 | Msa1132210:intron | 50.0% | |
| CACGCAAGGAAAGGGAAGTA+AGG | - | chr7_3:85061451-85061470 | None:intergenic | 50.0% | |
| GTCGAAGTTAGGATCACGCA+AGG | - | chr7_3:85061465-85061484 | None:intergenic | 50.0% | |
| GAAGATGCCGGAGTGTGATT+TGG | - | chr7_3:85061718-85061737 | None:intergenic | 50.0% | |
| GTGGCAGCAGACTGATGAAA+AGG | + | chr7_3:85061766-85061785 | Msa1132210:CDS | 50.0% | |
| !! | AAAGGTAGCCAAGTTCTGGG+GGG | + | chr7_3:85061784-85061803 | Msa1132210:CDS | 50.0% |
| GACACGCCAACATGCATCCT+AGG | + | chr7_3:85060309-85060328 | Msa1132210:intron | 55.0% | |
| GTAAGGTTCCCCCCAGAACT+TGG | - | chr7_3:85061795-85061814 | None:intergenic | 55.0% | |
| ACCCATCCACACCTCGCACA+AGG | + | chr7_3:85060498-85060517 | Msa1132210:intron | 60.0% | |
| GCCTTGTGCGAGGTGTGGAT+GGG | - | chr7_3:85060502-85060521 | None:intergenic | 60.0% | |
| TGCCTTGTGCGAGGTGTGGA+TGG | - | chr7_3:85060503-85060522 | None:intergenic | 60.0% | |
| GAGATGCCTTGTGCGAGGTG+TGG | - | chr7_3:85060507-85060526 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_3 | gene | 85059424 | 85062215 | 85059424 | ID=Msa1132210;Name=Msa1132210 |
| chr7_3 | mRNA | 85059424 | 85062215 | 85059424 | ID=Msa1132210-mRNA-1;Parent=Msa1132210;Name=Msa1132210-mRNA-1;_AED=0.07;_eAED=0.11;_QI=0|0|0|1|0|0|5|0|325 |
| chr7_3 | exon | 85059424 | 85059664 | 85059424 | ID=Msa1132210-mRNA-1:exon:25360;Parent=Msa1132210-mRNA-1 |
| chr7_3 | exon | 85059701 | 85059924 | 85059701 | ID=Msa1132210-mRNA-1:exon:25361;Parent=Msa1132210-mRNA-1 |
| chr7_3 | exon | 85061665 | 85061906 | 85061665 | ID=Msa1132210-mRNA-1:exon:25362;Parent=Msa1132210-mRNA-1 |
| chr7_3 | exon | 85061928 | 85062155 | 85061928 | ID=Msa1132210-mRNA-1:exon:25363;Parent=Msa1132210-mRNA-1 |
| chr7_3 | exon | 85062173 | 85062215 | 85062173 | ID=Msa1132210-mRNA-1:exon:25364;Parent=Msa1132210-mRNA-1 |
| chr7_3 | CDS | 85059424 | 85059664 | 85059424 | ID=Msa1132210-mRNA-1:cds;Parent=Msa1132210-mRNA-1 |
| chr7_3 | CDS | 85059701 | 85059924 | 85059701 | ID=Msa1132210-mRNA-1:cds;Parent=Msa1132210-mRNA-1 |
| chr7_3 | CDS | 85061665 | 85061906 | 85061665 | ID=Msa1132210-mRNA-1:cds;Parent=Msa1132210-mRNA-1 |
| chr7_3 | CDS | 85061928 | 85062155 | 85061928 | ID=Msa1132210-mRNA-1:cds;Parent=Msa1132210-mRNA-1 |
| chr7_3 | CDS | 85062173 | 85062215 | 85062173 | ID=Msa1132210-mRNA-1:cds;Parent=Msa1132210-mRNA-1 |
| Gene Sequence |
| Protein sequence |
