Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0794350 | sp|P05332|YP20_BACLI | 30.818 | 159 | 87 | 3 | 15 | 154 | 2 | 156 | 1.04e-13 | 71.6 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0794350 | A0A396HL91 | 65.423 | 402 | 77 | 8 | 1 | 341 | 1 | 401 | 6.96e-167 | 480 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0794350 | TR | GNAT |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0004480 | Msa0794350 | 0.806601 | 7.598039e-50 | -8.615850e-47 |
| Msa0005260 | Msa0794350 | 0.800077 | 1.706862e-48 | -8.615850e-47 |
| Msa0043850 | Msa0794350 | 0.800959 | 1.128265e-48 | -8.615850e-47 |
| Msa0769720 | Msa0794350 | 0.822420 | 2.391492e-53 | -8.615850e-47 |
| Msa0794350 | Msa1132210 | 0.814282 | 1.667874e-51 | -8.615850e-47 |
| Msa0794350 | Msa1156820 | 0.801466 | 8.887795e-49 | -8.615850e-47 |
| Msa0794350 | Msa1218160 | 0.801310 | 9.563015e-49 | -8.615850e-47 |
| Msa0794350 | Msa1238680 | 0.806964 | 6.369316e-50 | -8.615850e-47 |
| Msa0794350 | Msa1285200 | 0.801849 | 7.414922e-49 | -8.615850e-47 |
| Msa0137980 | Msa0794350 | 0.802829 | 4.658523e-49 | -8.615850e-47 |
| Msa0305620 | Msa0794350 | 0.811643 | 6.317259e-51 | -8.615850e-47 |
| Msa0579670 | Msa0794350 | 0.886760 | 2.582329e-72 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0794350 | MtrunA17_Chr5g0394631 | 65.423 | 402 | 77 | 8 | 1 | 341 | 1 | 401 | 1.34e-170 | 480 |
| Msa0794350 | MtrunA17_Chr5g0394621 | 73.964 | 169 | 30 | 1 | 1 | 155 | 1 | 169 | 2.78e-82 | 248 |
| Msa0794350 | MtrunA17_Chr5g0394621 | 65.789 | 190 | 60 | 4 | 155 | 341 | 3 | 190 | 2.59e-74 | 228 |
| Msa0794350 | MtrunA17_Chr1g0204971 | 61.538 | 169 | 51 | 2 | 1 | 155 | 1 | 169 | 5.74e-67 | 209 |
| Msa0794350 | MtrunA17_Chr1g0204971 | 53.403 | 191 | 80 | 6 | 156 | 341 | 4 | 190 | 1.83e-56 | 182 |
| Msa0794350 | MtrunA17_Chr1g0204951 | 61.988 | 171 | 51 | 2 | 1 | 157 | 1 | 171 | 1.73e-66 | 207 |
| Msa0794350 | MtrunA17_Chr1g0204951 | 53.927 | 191 | 79 | 6 | 156 | 341 | 4 | 190 | 1.21e-57 | 185 |
| Msa0794350 | MtrunA17_Chr7g0273661 | 42.953 | 149 | 74 | 1 | 17 | 154 | 4 | 152 | 2.53e-35 | 126 |
| Msa0794350 | MtrunA17_Chr7g0273661 | 36.306 | 157 | 97 | 1 | 169 | 325 | 4 | 157 | 1.77e-26 | 103 |
| Msa0794350 | MtrunA17_Chr7g0223361 | 42.953 | 149 | 73 | 2 | 16 | 153 | 3 | 150 | 1.94e-32 | 119 |
| Msa0794350 | MtrunA17_Chr7g0223361 | 37.791 | 172 | 102 | 3 | 168 | 338 | 3 | 170 | 6.50e-29 | 110 |
| Msa0794350 | MtrunA17_Chr7g0223351 | 40.278 | 144 | 75 | 2 | 20 | 153 | 7 | 149 | 1.49e-29 | 111 |
| Msa0794350 | MtrunA17_Chr7g0223351 | 36.686 | 169 | 99 | 5 | 172 | 338 | 7 | 169 | 2.87e-26 | 102 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0794350 | AT2G32020.1 | 49.324 | 148 | 60 | 2 | 20 | 155 | 18 | 162 | 4.31e-43 | 147 |
| Msa0794350 | AT2G32020.1 | 47.368 | 171 | 78 | 7 | 172 | 338 | 18 | 180 | 6.81e-37 | 131 |
| Msa0794350 | AT2G32030.1 | 46.541 | 159 | 68 | 2 | 6 | 155 | 17 | 167 | 1.00e-41 | 144 |
| Msa0794350 | AT2G32030.1 | 47.059 | 170 | 78 | 7 | 173 | 338 | 24 | 185 | 1.33e-35 | 128 |
| Msa0794350 | AT3G22560.1 | 37.500 | 152 | 82 | 1 | 16 | 154 | 2 | 153 | 6.46e-27 | 105 |
| Msa0794350 | AT3G22560.1 | 31.818 | 176 | 110 | 5 | 168 | 338 | 2 | 172 | 7.37e-20 | 85.9 |
Find 72 sgRNAs with CRISPR-Local
Find 165 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGGAAGTATGTATTCTTTAA+AGG | 0.178090 | 5_3:-6227644 | Msa0794350:CDS |
| CAAATCAATGATCTCTTCTT+TGG | 0.196407 | 5_3:+6230335 | None:intergenic |
| TTGTTGATGTGGATAATTTA+AGG | 0.203228 | 5_3:-6227714 | Msa0794350:CDS |
| AGAATCAAATGTGCAGAAAT+TGG | 0.218349 | 5_3:-6227847 | Msa0794350:CDS |
| GGGAGTTCTTAGGAAGTATT+TGG | 0.241791 | 5_3:-6229890 | Msa0794350:intron |
| CTCTTCTTTGGCACATGGTT+TGG | 0.246122 | 5_3:+6230347 | None:intergenic |
| ATAATCTAAGCTCTATATAT+TGG | 0.258828 | 5_3:-6230059 | Msa0794350:CDS |
| TCCTAAGAACTCCCTCCTTT+TGG | 0.260104 | 5_3:+6229899 | None:intergenic |
| ATGAAAAGGTAGCCAAGTTC+TGG | 0.273400 | 5_3:-6228014 | Msa0794350:CDS |
| CTCTTCATTGGCACATGGTT+TGG | 0.274557 | 5_3:+6228116 | None:intergenic |
| GCTTCAAGCCTTTCCAAGTA+TGG | 0.276638 | 5_3:+6227739 | None:intergenic |
| ATCAAGGTCAGAAAGATTAA+AGG | 0.290557 | 5_3:+6230293 | None:intergenic |
| TAATCTAAGCTCTATATATT+GGG | 0.291812 | 5_3:-6230058 | Msa0794350:CDS |
| ATGTTCTAGGCTCTAAATAT+TGG | 0.292142 | 5_3:-6227822 | Msa0794350:CDS |
| GTTGATGCCATCTTCTTTGC+TGG | 0.294680 | 5_3:+6230209 | None:intergenic |
| AGGTTCCCATGAGCAGAATT+TGG | 0.303996 | 5_3:+6230236 | None:intergenic |
| TGCTGTGAAACAAATTATTA+AGG | 0.312252 | 5_3:-6230016 | Msa0794350:CDS |
| TGTTCTAGGCTCTAAATATT+GGG | 0.316974 | 5_3:-6227821 | Msa0794350:CDS |
| CCATCTTCTTTGCTGGTGTA+AGG | 0.323803 | 5_3:+6230216 | None:intergenic |
| TGCCATAATGATCATGCTAT+TGG | 0.333891 | 5_3:-6227910 | Msa0794350:CDS |
| ACCCAATAGCATGATCATTA+TGG | 0.341789 | 5_3:+6227908 | None:intergenic |
| GCAGAAATTGGGTATGTTCT+AGG | 0.344662 | 5_3:-6227835 | Msa0794350:CDS |
| CAAATCAATGATCTCTTCAT+TGG | 0.363988 | 5_3:+6228104 | None:intergenic |
| TCTCCAAGTATGAAAATTCA+TGG | 0.373432 | 5_3:+6229986 | None:intergenic |
| CCTTCGTCTTTGCTAGTGTA+AGG | 0.376096 | 5_3:+6227985 | None:intergenic |
| TCCAAAAGGAGGGAGTTCTT+AGG | 0.394554 | 5_3:-6229900 | Msa0794350:CDS |
| TAAAGGGTCGGAGTGTGATT+TGG | 0.396804 | 5_3:+6230310 | None:intergenic |
| GGCTCTAAATATTGGGGTAA+AGG | 0.406739 | 5_3:-6227814 | Msa0794350:CDS |
| ATTCAGTGAATTTCCATACT+TGG | 0.413337 | 5_3:-6227752 | Msa0794350:CDS |
| CACGTTTGCTGTGAAACAAA+TGG | 0.422199 | 5_3:-6227785 | Msa0794350:CDS |
| GCTCTAAATATTGGGGTAAA+GGG | 0.428389 | 5_3:-6227813 | Msa0794350:CDS |
| AGGAAACAATCTGCAGAACT+TGG | 0.436712 | 5_3:-6230084 | Msa0794350:CDS |
| TTCTGACCTTGATGATGTAA+TGG | 0.440976 | 5_3:-6228052 | Msa0794350:CDS |
| TTCTGACCTTGATGATGTAA+TGG | 0.440976 | 5_3:-6230283 | Msa0794350:CDS |
| CAAAGAGTAGTTGAGAAAGT+TGG | 0.450786 | 5_3:-6227688 | Msa0794350:CDS |
| GAAGATGTCGGAGTGTGATT+TGG | 0.453912 | 5_3:+6228079 | None:intergenic |
| GAATCAAATGTGCAGAAATT+GGG | 0.456981 | 5_3:-6227846 | Msa0794350:CDS |
| TGCTGTGAAACAAATGGTTA+AGG | 0.473285 | 5_3:-6227779 | Msa0794350:CDS |
| TCAAGGTCAGAAAGATTAAA+GGG | 0.477441 | 5_3:+6230294 | None:intergenic |
| GCCATAATGATCATGCTATT+GGG | 0.478546 | 5_3:-6227909 | Msa0794350:CDS |
| TGAAAAGGTAGCCAAGTTCT+GGG | 0.482152 | 5_3:-6228013 | Msa0794350:CDS |
| CTTGTCGATGTTGAAAATGT+TGG | 0.484592 | 5_3:-6229952 | Msa0794350:CDS |
| GTGAATTTCCATACTTGGAA+AGG | 0.490341 | 5_3:-6227747 | Msa0794350:CDS |
| GCTCTATATATTGGGGCAAA+GGG | 0.493310 | 5_3:-6230050 | Msa0794350:CDS |
| CAAAGAGTGTTGGAGAAAGC+TGG | 0.499760 | 5_3:-6229925 | Msa0794350:CDS |
| AGCTCTATATATTGGGGCAA+AGG | 0.501996 | 5_3:-6230051 | Msa0794350:CDS |
| TTGTCGATGTTGAAAATGTT+GGG | 0.503194 | 5_3:-6229951 | Msa0794350:CDS |
| AAGTGGCCAAATTCTGCTCA+TGG | 0.506987 | 5_3:-6230242 | Msa0794350:CDS |
| ATGATCTCTTCTTTGGCACA+TGG | 0.535452 | 5_3:+6230342 | None:intergenic |
| GGAGAAAGCTGGTTTCCAAA+AGG | 0.547990 | 5_3:-6229914 | Msa0794350:CDS |
| CCTTACACCAGCAAAGAAGA+TGG | 0.560893 | 5_3:-6230216 | Msa0794350:CDS |
| GAAAGCTGGTTTCCAAAAGG+AGG | 0.562242 | 5_3:-6229911 | Msa0794350:CDS |
| TGTTGGGTCACAAAGAGTGT+TGG | 0.566749 | 5_3:-6229935 | Msa0794350:CDS |
| GCTTGAAGCTCTTGTTGATG+TGG | 0.580383 | 5_3:-6227725 | Msa0794350:CDS |
| AGTGGCCAAATTCTGCTCAT+GGG | 0.587068 | 5_3:-6230241 | Msa0794350:CDS |
| AATCTAAGCTCTATATATTG+GGG | 0.593409 | 5_3:-6230057 | Msa0794350:CDS |
| GTGGCAGCAGACTGATGAAA+AGG | 0.594266 | 5_3:-6228028 | Msa0794350:CDS |
| GCCACACCATTACATCATCA+AGG | 0.594693 | 5_3:+6228046 | None:intergenic |
| GCCACACCATTACATCATCA+AGG | 0.594693 | 5_3:+6230277 | None:intergenic |
| GGTCAGAAAGATTAAAGGGT+CGG | 0.596865 | 5_3:+6230298 | None:intergenic |
| TCACACCTGAAGATAAAAGC+AGG | 0.598275 | 5_3:-6230104 | Msa0794350:intron |
| ATGATCTCTTCATTGGCACA+TGG | 0.598564 | 5_3:+6228111 | None:intergenic |
| AAAAGGTAGCCAAGTTCTGG+GGG | 0.620200 | 5_3:-6228011 | Msa0794350:CDS |
| GAAAAGGTAGCCAAGTTCTG+GGG | 0.624494 | 5_3:-6228012 | Msa0794350:CDS |
| GTTCTAGGCTCTAAATATTG+GGG | 0.628624 | 5_3:-6227820 | Msa0794350:CDS |
| GGTCAGAAAGATGAAGATGT+CGG | 0.630507 | 5_3:+6228067 | None:intergenic |
| AAAGCTGGTTTCCAAAAGGA+GGG | 0.657724 | 5_3:-6229910 | Msa0794350:CDS |
| CATTTGTTTCACAGCAAACG+TGG | 0.659491 | 5_3:+6227786 | None:intergenic |
| ACCTTGATGATGTAATGGTG+TGG | 0.686805 | 5_3:-6230278 | Msa0794350:CDS |
| ACCTTGATGATGTAATGGTG+TGG | 0.697032 | 5_3:-6228047 | Msa0794350:CDS |
| CCTTACACTAGCAAAGACGA+AGG | 0.715657 | 5_3:-6227985 | Msa0794350:CDS |
| AAAGGTAGCCAAGTTCTGGG+GGG | 0.779565 | 5_3:-6228010 | Msa0794350:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTATGTTATTATAATCTATA+AGG | - | chr5_3:6228320-6228339 | Msa0794350:intron | 10.0% |
| !!! | TATATAATTTTTTCAAGTAT+TGG | + | chr5_3:6228375-6228394 | None:intergenic | 10.0% |
| !! | AAGAAAAAAAATATTTCTTA+TGG | + | chr5_3:6229044-6229063 | None:intergenic | 10.0% |
| !!! | TAAGAAATATTTTTTTTCTT+AGG | - | chr5_3:6229044-6229063 | Msa0794350:intron | 10.0% |
| !!! | TTTCACAAATATTATTATTT+TGG | - | chr5_3:6229356-6229375 | Msa0794350:intron | 10.0% |
| !! | AAAATGAAACTTATTAAAGT+TGG | + | chr5_3:6228151-6228170 | None:intergenic | 15.0% |
| !! | ACAAAAAAAATGTAATACAT+CGG | + | chr5_3:6228222-6228241 | None:intergenic | 15.0% |
| !!! | TTTTAATTGTAATCAAAATC+AGG | + | chr5_3:6228406-6228425 | None:intergenic | 15.0% |
| !!! | TTTTTAACATCATATAGTAT+CGG | - | chr5_3:6228789-6228808 | Msa0794350:intron | 15.0% |
| !!! | AAATATTTTTTTTCTTAGGT+GGG | - | chr5_3:6229048-6229067 | Msa0794350:intron | 15.0% |
| !!! | TTTTATTTCATTCTAAATCT+TGG | + | chr5_3:6229239-6229258 | None:intergenic | 15.0% |
| !! | AGAATGAAATAAAATAACTT+AGG | - | chr5_3:6229245-6229264 | Msa0794350:intron | 15.0% |
| !! | TTATGGTAATATATTAACAA+TGG | - | chr5_3:6229392-6229411 | Msa0794350:intron | 15.0% |
| !! | ATAATCTAAGCTCTATATAT+TGG | - | chr5_3:6227901-6227920 | Msa0794350:CDS | 20.0% |
| !! | TAATCTAAGCTCTATATATT+GGG | - | chr5_3:6227902-6227921 | Msa0794350:CDS | 20.0% |
| !!! | CATTTTTTTTGTGATATTTG+AGG | - | chr5_3:6228230-6228249 | Msa0794350:intron | 20.0% |
| !! | AAAGTTAAAACACAATCTTA+GGG | - | chr5_3:6228288-6228307 | Msa0794350:intron | 20.0% |
| !!! | ATCAAAGGTATATAAAATTG+TGG | - | chr5_3:6228500-6228519 | Msa0794350:intron | 20.0% |
| !!! | TAGTATCGGTATTAAAAAAA+AGG | - | chr5_3:6228803-6228822 | Msa0794350:intron | 20.0% |
| !!! | GAAATATTTTTTTTCTTAGG+TGG | - | chr5_3:6229047-6229066 | Msa0794350:intron | 20.0% |
| !!! | TAAAAATGGTTTTCAATTGT+TGG | - | chr5_3:6229200-6229219 | Msa0794350:intron | 20.0% |
| !! | AAAATAACTTAGGTAACATA+AGG | - | chr5_3:6229255-6229274 | Msa0794350:intron | 20.0% |
| !! | AAATAACTTAGGTAACATAA+GGG | - | chr5_3:6229256-6229275 | Msa0794350:intron | 20.0% |
| !!! | CAATGGATGATTTTTTTTTT+TGG | - | chr5_3:6229409-6229428 | Msa0794350:intron | 20.0% |
| !! | GTTTCTTCTATGAATTAATT+TGG | + | chr5_3:6229797-6229816 | None:intergenic | 20.0% |
| !! | TTTCAAAAAGTGGATAATTT+AGG | - | chr5_3:6230296-6230315 | Msa0794350:CDS | 20.0% |
| ! | AATCTAAGCTCTATATATTG+GGG | - | chr5_3:6227903-6227922 | Msa0794350:CDS | 25.0% |
| ! | TGCTGTGAAACAAATTATTA+AGG | - | chr5_3:6227944-6227963 | Msa0794350:CDS | 25.0% |
| !! | ATTCCATGAATTTTCATACT+TGG | - | chr5_3:6227971-6227990 | Msa0794350:CDS | 25.0% |
| ! | CAAAGTTAAAACACAATCTT+AGG | - | chr5_3:6228287-6228306 | Msa0794350:intron | 25.0% |
| ! | AAATATCTCGTGAAATCTAT+TGG | - | chr5_3:6228736-6228755 | Msa0794350:intron | 25.0% |
| !! | ATTCATTACTTGTTGCTTAT+CGG | - | chr5_3:6228871-6228890 | Msa0794350:intron | 25.0% |
| ! | AAACAACTCTAATTAAGAGA+CGG | + | chr5_3:6229102-6229121 | None:intergenic | 25.0% |
| ! | AACTTGTCCAAAAATAACTT+AGG | - | chr5_3:6229283-6229302 | Msa0794350:intron | 25.0% |
| !!! | TCTAACACCTAAGTTATTTT+TGG | + | chr5_3:6229293-6229312 | None:intergenic | 25.0% |
| ! | GACTTGAATATGCATTAAAT+GGG | + | chr5_3:6229561-6229580 | None:intergenic | 25.0% |
| ! | TGACTTGAATATGCATTAAA+TGG | + | chr5_3:6229562-6229581 | None:intergenic | 25.0% |
| ! | AAAGTCTTGGAGATAAAAAA+AGG | + | chr5_3:6229692-6229711 | None:intergenic | 25.0% |
| !!! | GAATTGAAGTGTTGAATTTT+AGG | + | chr5_3:6229723-6229742 | None:intergenic | 25.0% |
| !!! | ACAACAAGTGTTTATTTTCT+AGG | + | chr5_3:6229768-6229787 | None:intergenic | 25.0% |
| !! | TTCATAGAAGAAACAAGTTT+TGG | - | chr5_3:6229803-6229822 | Msa0794350:intron | 25.0% |
| ! | TTGTTGATGTGGATAATTTA+AGG | - | chr5_3:6230246-6230265 | Msa0794350:CDS | 25.0% |
| !! | AGGAAGTATGTATTCTTTAA+AGG | - | chr5_3:6230316-6230335 | Msa0794350:CDS | 25.0% |
| CAAATCAATGATCTCTTCTT+TGG | + | chr5_3:6227628-6227647 | None:intergenic | 30.0% | |
| TCAAGGTCAGAAAGATTAAA+GGG | + | chr5_3:6227669-6227688 | None:intergenic | 30.0% | |
| ATCAAGGTCAGAAAGATTAA+AGG | + | chr5_3:6227670-6227689 | None:intergenic | 30.0% | |
| TCTCCAAGTATGAAAATTCA+TGG | + | chr5_3:6227977-6227996 | None:intergenic | 30.0% | |
| ! | ATGAATTTTCATACTTGGAG+AGG | - | chr5_3:6227976-6227995 | Msa0794350:CDS | 30.0% |
| TTGTCGATGTTGAAAATGTT+GGG | - | chr5_3:6228009-6228028 | Msa0794350:CDS | 30.0% | |
| ! | GTTACTTTCCTTTCTTAACA+AGG | + | chr5_3:6228260-6228279 | None:intergenic | 30.0% |
| TGTTAAGAAAGGAAAGTAAC+AGG | - | chr5_3:6228260-6228279 | Msa0794350:intron | 30.0% | |
| TATATACCTTTGATCTTCCT+AGG | + | chr5_3:6228494-6228513 | None:intergenic | 30.0% | |
| GATAAATCTAAGTTGTGCTT+TGG | + | chr5_3:6228849-6228868 | None:intergenic | 30.0% | |
| ! | TATTTCTAACTCTACAGACA+AGG | - | chr5_3:6228946-6228965 | Msa0794350:intron | 30.0% |
| ! | ATCGTGTTATTCATAGATGA+TGG | - | chr5_3:6229143-6229162 | Msa0794350:intron | 30.0% |
| ! | TCGTGTTATTCATAGATGAT+GGG | - | chr5_3:6229144-6229163 | Msa0794350:intron | 30.0% |
| !! | GGTTTTCAATTGTTGGTTAT+TGG | - | chr5_3:6229207-6229226 | Msa0794350:intron | 30.0% |
| ! | TTCAATTGTTGGTTATTGGA+TGG | - | chr5_3:6229211-6229230 | Msa0794350:intron | 30.0% |
| TTGGTTAATTGCGATGATTA+TGG | - | chr5_3:6229375-6229394 | Msa0794350:intron | 30.0% | |
| TTAGGCTATTTACAAAGTCT+TGG | + | chr5_3:6229705-6229724 | None:intergenic | 30.0% | |
| CTAGGCTATTTATAAAGTCA+TGG | + | chr5_3:6229750-6229769 | None:intergenic | 30.0% | |
| CAAATCAATGATCTCTTCAT+TGG | + | chr5_3:6229859-6229878 | None:intergenic | 30.0% | |
| AGAATCAAATGTGCAGAAAT+TGG | - | chr5_3:6230113-6230132 | Msa0794350:intron | 30.0% | |
| GAATCAAATGTGCAGAAATT+GGG | - | chr5_3:6230114-6230133 | Msa0794350:intron | 30.0% | |
| !! | ATGTTCTAGGCTCTAAATAT+TGG | - | chr5_3:6230138-6230157 | Msa0794350:intron | 30.0% |
| !! | TGTTCTAGGCTCTAAATATT+GGG | - | chr5_3:6230139-6230158 | Msa0794350:intron | 30.0% |
| ATTCAGTGAATTTCCATACT+TGG | - | chr5_3:6230208-6230227 | Msa0794350:CDS | 30.0% | |
| !!! | GAAAGTTGGTTTTCAAAAAG+TGG | - | chr5_3:6230286-6230305 | Msa0794350:CDS | 30.0% |
| !! | TTCTGACCTTGATGATGTAA+TGG | - | chr5_3:6227677-6227696 | Msa0794350:CDS | 35.0% |
| !! | TGTTTCCTGCTTTTATCTTC+AGG | + | chr5_3:6227864-6227883 | None:intergenic | 35.0% |
| CTTGTCGATGTTGAAAATGT+TGG | - | chr5_3:6228008-6228027 | Msa0794350:CDS | 35.0% | |
| !! | AGGAAGTATTTGGTCATGAA+AGG | - | chr5_3:6228080-6228099 | Msa0794350:CDS | 35.0% |
| TACTTTGTAGAGAGCAGAAA+CGG | + | chr5_3:6228640-6228659 | None:intergenic | 35.0% | |
| ATGCATATTCAAGTCAACCA+TGG | - | chr5_3:6229566-6229585 | Msa0794350:intron | 35.0% | |
| TAGAGTTAAAGGAAGTTGCA+CGG | + | chr5_3:6229660-6229679 | None:intergenic | 35.0% | |
| GGAAGATTGAGTAGAGTTAA+AGG | + | chr5_3:6229671-6229690 | None:intergenic | 35.0% | |
| !! | TTCTGACCTTGATGATGTAA+TGG | - | chr5_3:6227677-6227696 | Msa0794350:CDS | 35.0% |
| TGCCATAATGATCATGCTAT+TGG | - | chr5_3:6230050-6230069 | Msa0794350:CDS | 35.0% | |
| GCCATAATGATCATGCTATT+GGG | - | chr5_3:6230051-6230070 | Msa0794350:CDS | 35.0% | |
| ACCCAATAGCATGATCATTA+TGG | + | chr5_3:6230055-6230074 | None:intergenic | 35.0% | |
| !! | GTTCTAGGCTCTAAATATTG+GGG | - | chr5_3:6230140-6230159 | Msa0794350:intron | 35.0% |
| ! | GCTCTAAATATTGGGGTAAA+GGG | - | chr5_3:6230147-6230166 | Msa0794350:intron | 35.0% |
| TGCTGTGAAACAAATGGTTA+AGG | - | chr5_3:6230181-6230200 | Msa0794350:CDS | 35.0% | |
| GTGAATTTCCATACTTGGAA+AGG | - | chr5_3:6230213-6230232 | Msa0794350:CDS | 35.0% | |
| CAAAGAGTAGTTGAGAAAGT+TGG | - | chr5_3:6230272-6230291 | Msa0794350:CDS | 35.0% | |
| ATGATCTCTTCTTTGGCACA+TGG | + | chr5_3:6227621-6227640 | None:intergenic | 40.0% | |
| GGTCAGAAAGATTAAAGGGT+CGG | + | chr5_3:6227665-6227684 | None:intergenic | 40.0% | |
| !! | ACCTTGATGATGTAATGGTG+TGG | - | chr5_3:6227682-6227701 | Msa0794350:CDS | 40.0% |
| GTGGCATACTGATGAAAAAG+TGG | - | chr5_3:6227701-6227720 | Msa0794350:CDS | 40.0% | |
| ! | TGCATTGATGATCGTGCTAT+TGG | - | chr5_3:6227819-6227838 | Msa0794350:CDS | 40.0% |
| TCACACCTGAAGATAAAAGC+AGG | - | chr5_3:6227856-6227875 | Msa0794350:CDS | 40.0% | |
| AGGAAACAATCTGCAGAACT+TGG | - | chr5_3:6227876-6227895 | Msa0794350:CDS | 40.0% | |
| AGCTCTATATATTGGGGCAA+AGG | - | chr5_3:6227909-6227928 | Msa0794350:CDS | 40.0% | |
| GCTCTATATATTGGGGCAAA+GGG | - | chr5_3:6227910-6227929 | Msa0794350:CDS | 40.0% | |
| ! | AAAGCTGGTTTCCAAAAGGA+GGG | - | chr5_3:6228050-6228069 | Msa0794350:CDS | 40.0% |
| !! | GGGAGTTCTTAGGAAGTATT+TGG | - | chr5_3:6228070-6228089 | Msa0794350:CDS | 40.0% |
| ! | GAGGTTTGCCTTGTTAAGAA+AGG | - | chr5_3:6228249-6228268 | Msa0794350:intron | 40.0% |
| CTGCTTATGCTTATGTCTAG+AGG | - | chr5_3:6228345-6228364 | Msa0794350:intron | 40.0% | |
| ATGCATCCTAGGAAGATCAA+AGG | - | chr5_3:6228485-6228504 | Msa0794350:intron | 40.0% | |
| ACTTTGTAGAGAGCAGAAAC+GGG | + | chr5_3:6228639-6228658 | None:intergenic | 40.0% | |
| !!! | TTTTTTTCTTAGGTGGGTCG+CGG | - | chr5_3:6229054-6229073 | Msa0794350:intron | 40.0% |
| GGAGTTTCTCATAAACAGCA+TGG | + | chr5_3:6229081-6229100 | None:intergenic | 40.0% | |
| TTCATGTACGTGAGCTTCAT+AGG | - | chr5_3:6229528-6229547 | Msa0794350:intron | 40.0% | |
| AAGGGAAGTAAGGGATTTCA+AGG | + | chr5_3:6229606-6229625 | None:intergenic | 40.0% | |
| GTTAAGATCACGCAAGGAAA+GGG | + | chr5_3:6229624-6229643 | None:intergenic | 40.0% | |
| AGTTAAGATCACGCAAGGAA+AGG | + | chr5_3:6229625-6229644 | None:intergenic | 40.0% | |
| ATGATCTCTTCATTGGCACA+TGG | + | chr5_3:6229852-6229871 | None:intergenic | 40.0% | |
| GGTCAGAAAGATGAAGATGT+CGG | + | chr5_3:6229896-6229915 | None:intergenic | 40.0% | |
| !! | ACCTTGATGATGTAATGGTG+TGG | - | chr5_3:6227682-6227701 | Msa0794350:CDS | 40.0% |
| ATGAAAAGGTAGCCAAGTTC+TGG | - | chr5_3:6229946-6229965 | Msa0794350:CDS | 40.0% | |
| TGAAAAGGTAGCCAAGTTCT+GGG | - | chr5_3:6229947-6229966 | Msa0794350:CDS | 40.0% | |
| GCAGAAATTGGGTATGTTCT+AGG | - | chr5_3:6230125-6230144 | Msa0794350:intron | 40.0% | |
| !! | GGCTCTAAATATTGGGGTAA+AGG | - | chr5_3:6230146-6230165 | Msa0794350:intron | 40.0% |
| CATTTGTTTCACAGCAAACG+TGG | + | chr5_3:6230177-6230196 | None:intergenic | 40.0% | |
| !! | CACGTTTGCTGTGAAACAAA+TGG | - | chr5_3:6230175-6230194 | Msa0794350:CDS | 40.0% |
| CTCTTCTTTGGCACATGGTT+TGG | + | chr5_3:6227616-6227635 | None:intergenic | 45.0% | |
| TAAAGGGTCGGAGTGTGATT+TGG | + | chr5_3:6227653-6227672 | None:intergenic | 45.0% | |
| GCCACACCATTACATCATCA+AGG | + | chr5_3:6227686-6227705 | None:intergenic | 45.0% | |
| AAGTGGCCAAATTCTGCTCA+TGG | - | chr5_3:6227718-6227737 | Msa0794350:CDS | 45.0% | |
| AGTGGCCAAATTCTGCTCAT+GGG | - | chr5_3:6227719-6227738 | Msa0794350:CDS | 45.0% | |
| AGGTTCCCATGAGCAGAATT+TGG | + | chr5_3:6227727-6227746 | None:intergenic | 45.0% | |
| CCATCTTCTTTGCTGGTGTA+AGG | + | chr5_3:6227747-6227766 | None:intergenic | 45.0% | |
| CCTTACACCAGCAAAGAAGA+TGG | - | chr5_3:6227744-6227763 | Msa0794350:CDS | 45.0% | |
| GTTGATGCCATCTTCTTTGC+TGG | + | chr5_3:6227754-6227773 | None:intergenic | 45.0% | |
| ! | TGTTGGGTCACAAAGAGTGT+TGG | - | chr5_3:6228025-6228044 | Msa0794350:CDS | 45.0% |
| !! | CAAAGAGTGTTGGAGAAAGC+TGG | - | chr5_3:6228035-6228054 | Msa0794350:CDS | 45.0% |
| ! | GGAGAAAGCTGGTTTCCAAA+AGG | - | chr5_3:6228046-6228065 | Msa0794350:CDS | 45.0% |
| ! | GAAAGCTGGTTTCCAAAAGG+AGG | - | chr5_3:6228049-6228068 | Msa0794350:CDS | 45.0% |
| TCCAAAAGGAGGGAGTTCTT+AGG | - | chr5_3:6228060-6228079 | Msa0794350:CDS | 45.0% | |
| ! | TCCTAAGAACTCCCTCCTTT+TGG | + | chr5_3:6228064-6228083 | None:intergenic | 45.0% |
| GATCTTCCTAGGATGCATGT+TGG | + | chr5_3:6228483-6228502 | None:intergenic | 45.0% | |
| GGATGGATAGGCATCACTTA+CGG | + | chr5_3:6228618-6228637 | None:intergenic | 45.0% | |
| !! | TGAGTGTCGACACAGTATTG+AGG | - | chr5_3:6228970-6228989 | Msa0794350:intron | 45.0% |
| ! | TCGACACAGTATTGAGGCAA+TGG | - | chr5_3:6228976-6228995 | Msa0794350:intron | 45.0% |
| GTACGTGAGCTTCATAGGTT+TGG | - | chr5_3:6229533-6229552 | Msa0794350:intron | 45.0% | |
| ACGCAAGGAAAGGGAAGTAA+GGG | + | chr5_3:6229615-6229634 | None:intergenic | 45.0% | |
| GTCGAAGTTAAGATCACGCA+AGG | + | chr5_3:6229630-6229649 | None:intergenic | 45.0% | |
| AAGGAAGTTGCACGGAAGAA+AGG | + | chr5_3:6229652-6229671 | None:intergenic | 45.0% | |
| CTCTTCATTGGCACATGGTT+TGG | + | chr5_3:6229847-6229866 | None:intergenic | 45.0% | |
| GAAGATGTCGGAGTGTGATT+TGG | + | chr5_3:6229884-6229903 | None:intergenic | 45.0% | |
| GCCACACCATTACATCATCA+AGG | + | chr5_3:6227686-6227705 | None:intergenic | 45.0% | |
| GAAAAGGTAGCCAAGTTCTG+GGG | - | chr5_3:6229948-6229967 | Msa0794350:CDS | 45.0% | |
| ! | AAAAGGTAGCCAAGTTCTGG+GGG | - | chr5_3:6229949-6229968 | Msa0794350:CDS | 45.0% |
| CCTTCGTCTTTGCTAGTGTA+AGG | + | chr5_3:6229978-6229997 | None:intergenic | 45.0% | |
| CCTTACACTAGCAAAGACGA+AGG | - | chr5_3:6229975-6229994 | Msa0794350:CDS | 45.0% | |
| GCTTCAAGCCTTTCCAAGTA+TGG | + | chr5_3:6230224-6230243 | None:intergenic | 45.0% | |
| GCTTGAAGCTCTTGTTGATG+TGG | - | chr5_3:6230235-6230254 | Msa0794350:CDS | 45.0% | |
| !!! | TAATTTTTTTAAAACAAAAA+AGG | - | chr5_3:6229003-6229022 | Msa0794350:intron | 5.0% |
| !!! | AATTTTTTTAAAACAAAAAA+GGG | - | chr5_3:6229004-6229023 | Msa0794350:intron | 5.0% |
| !!! | TTTTTAATAAATTATTGATT+TGG | + | chr5_3:6229186-6229205 | None:intergenic | 5.0% |
| !! | AATCAATAATTTATTAAAAA+TGG | - | chr5_3:6229186-6229205 | Msa0794350:intron | 5.0% |
| TGGATAGGCATCACTTACGG+TGG | + | chr5_3:6228615-6228634 | None:intergenic | 50.0% | |
| AGAGCAGAAACGGGATGGAT+AGG | + | chr5_3:6228630-6228649 | None:intergenic | 50.0% | |
| TGTAGAGAGCAGAAACGGGA+TGG | + | chr5_3:6228635-6228654 | None:intergenic | 50.0% | |
| TTCAAGAGATGCCTTGTGCG+AGG | + | chr5_3:6228677-6228696 | None:intergenic | 50.0% | |
| AGGTTGCTTCATGTCTGCCA+TGG | + | chr5_3:6229586-6229605 | None:intergenic | 50.0% | |
| CACGCAAGGAAAGGGAAGTA+AGG | + | chr5_3:6229616-6229635 | None:intergenic | 50.0% | |
| GTGGCAGCAGACTGATGAAA+AGG | - | chr5_3:6229932-6229951 | Msa0794350:CDS | 50.0% | |
| !! | AAAGGTAGCCAAGTTCTGGG+GGG | - | chr5_3:6229950-6229969 | Msa0794350:CDS | 50.0% |
| GACACGCCAACATGCATCCT+AGG | - | chr5_3:6228474-6228493 | Msa0794350:intron | 55.0% | |
| GTAAGGTTCCCCCCAGAACT+TGG | + | chr5_3:6229961-6229980 | None:intergenic | 55.0% | |
| ACCCATCCACACCTCGCACA+AGG | - | chr5_3:6228663-6228682 | Msa0794350:intron | 60.0% | |
| GCCTTGTGCGAGGTGTGGAT+GGG | + | chr5_3:6228667-6228686 | None:intergenic | 60.0% | |
| TGCCTTGTGCGAGGTGTGGA+TGG | + | chr5_3:6228668-6228687 | None:intergenic | 60.0% | |
| GAGATGCCTTGTGCGAGGTG+TGG | + | chr5_3:6228672-6228691 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 6227591 | 6230391 | 6227591 | ID=Msa0794350;Name=Msa0794350 |
| chr5_3 | mRNA | 6227591 | 6230391 | 6227591 | ID=Msa0794350-mRNA-1;Parent=Msa0794350;Name=Msa0794350-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0|0|0|1|0|0|3|0|341 |
| chr5_3 | exon | 6230151 | 6230391 | 6230151 | ID=Msa0794350-mRNA-1:exon:2520;Parent=Msa0794350-mRNA-1 |
| chr5_3 | exon | 6229891 | 6230114 | 6229891 | ID=Msa0794350-mRNA-1:exon:2519;Parent=Msa0794350-mRNA-1 |
| chr5_3 | exon | 6227591 | 6228151 | 6227591 | ID=Msa0794350-mRNA-1:exon:2518;Parent=Msa0794350-mRNA-1 |
| chr5_3 | CDS | 6230151 | 6230391 | 6230151 | ID=Msa0794350-mRNA-1:cds;Parent=Msa0794350-mRNA-1 |
| chr5_3 | CDS | 6229891 | 6230114 | 6229891 | ID=Msa0794350-mRNA-1:cds;Parent=Msa0794350-mRNA-1 |
| chr5_3 | CDS | 6227591 | 6228151 | 6227591 | ID=Msa0794350-mRNA-1:cds;Parent=Msa0794350-mRNA-1 |
| Gene Sequence |
| Protein sequence |
