Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1133310 | XP_039685435.1 | 84.422 | 199 | 6 | 1 | 1 | 174 | 10 | 208 | 4.86e-94 | 284 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1133310 | sp|O82155|DOF17_ARATH | 61.682 | 107 | 38 | 1 | 2 | 105 | 24 | 130 | 3.30e-40 | 139 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1133310 | G8A2U0 | 84.422 | 199 | 6 | 1 | 1 | 174 | 10 | 208 | 2.32e-94 | 284 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1133310 | TF | C2C2-Dof |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1133310 | Msa1232510 | 0.885795 | 5.976065e-72 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1133310 | MtrunA17_Chr8g0341671 | 84.422 | 199 | 6 | 1 | 1 | 174 | 10 | 208 | 4.47e-98 | 284 |
| Msa1133310 | MtrunA17_Chr8g0374111 | 58.252 | 103 | 43 | 0 | 6 | 108 | 24 | 126 | 6.18e-35 | 123 |
| Msa1133310 | MtrunA17_Chr2g0328021 | 50.000 | 132 | 53 | 3 | 6 | 126 | 57 | 186 | 1.01e-34 | 124 |
| Msa1133310 | MtrunA17_Chr4g0031411 | 61.628 | 86 | 32 | 1 | 6 | 91 | 70 | 154 | 2.82e-32 | 119 |
| Msa1133310 | MtrunA17_Chr8g0374251 | 35.294 | 204 | 102 | 5 | 8 | 181 | 65 | 268 | 6.21e-31 | 115 |
| Msa1133310 | MtrunA17_Chr7g0223311 | 75.385 | 65 | 16 | 0 | 12 | 76 | 78 | 142 | 1.50e-30 | 115 |
| Msa1133310 | MtrunA17_Chr4g0047001 | 65.000 | 80 | 26 | 1 | 12 | 89 | 56 | 135 | 3.49e-30 | 114 |
| Msa1133310 | MtrunA17_Chr4g0030051 | 77.049 | 61 | 14 | 0 | 2 | 62 | 32 | 92 | 7.33e-30 | 112 |
| Msa1133310 | MtrunA17_Chr7g0237921 | 60.638 | 94 | 35 | 2 | 4 | 95 | 68 | 161 | 1.44e-29 | 112 |
| Msa1133310 | MtrunA17_Chr4g0010151 | 46.897 | 145 | 71 | 5 | 4 | 145 | 74 | 215 | 1.77e-29 | 112 |
| Msa1133310 | MtrunA17_Chr4g0061761 | 84.906 | 53 | 8 | 0 | 9 | 61 | 38 | 90 | 3.09e-29 | 110 |
| Msa1133310 | MtrunA17_Chr2g0308011 | 60.465 | 86 | 28 | 1 | 11 | 90 | 37 | 122 | 5.61e-29 | 107 |
| Msa1133310 | MtrunA17_Chr8g0346551 | 54.545 | 88 | 40 | 0 | 8 | 95 | 21 | 108 | 6.55e-29 | 108 |
| Msa1133310 | MtrunA17_Chr8g0367161 | 49.612 | 129 | 38 | 4 | 11 | 112 | 32 | 160 | 8.78e-29 | 110 |
| Msa1133310 | MtrunA17_Chr5g0411951 | 75.000 | 56 | 14 | 0 | 6 | 61 | 38 | 93 | 1.17e-28 | 109 |
| Msa1133310 | MtrunA17_Chr3g0127201 | 71.875 | 64 | 16 | 2 | 6 | 68 | 21 | 83 | 6.13e-28 | 107 |
| Msa1133310 | MtrunA17_Chr1g0188851 | 68.750 | 64 | 20 | 0 | 2 | 65 | 34 | 97 | 6.93e-28 | 106 |
| Msa1133310 | MtrunA17_Chr2g0282511 | 87.755 | 49 | 6 | 0 | 11 | 59 | 45 | 93 | 1.23e-27 | 106 |
| Msa1133310 | MtrunA17_Chr7g0251181 | 57.627 | 118 | 19 | 2 | 1 | 118 | 10 | 96 | 1.37e-27 | 102 |
| Msa1133310 | MtrunA17_Chr3g0117601 | 76.786 | 56 | 13 | 0 | 6 | 61 | 56 | 111 | 7.69e-27 | 104 |
| Msa1133310 | MtrunA17_Chr3g0126201 | 84.000 | 50 | 8 | 0 | 13 | 62 | 53 | 102 | 1.01e-26 | 104 |
| Msa1133310 | MtrunA17_Chr6g0453321 | 49.057 | 106 | 39 | 3 | 11 | 116 | 136 | 226 | 1.35e-26 | 106 |
| Msa1133310 | MtrunA17_Chr2g0326001 | 70.492 | 61 | 18 | 0 | 2 | 62 | 31 | 91 | 1.39e-26 | 103 |
| Msa1133310 | MtrunA17_Chr4g0047761 | 77.358 | 53 | 12 | 0 | 9 | 61 | 70 | 122 | 4.68e-26 | 102 |
| Msa1133310 | MtrunA17_Chr2g0282441 | 78.431 | 51 | 11 | 0 | 12 | 62 | 26 | 76 | 9.09e-26 | 102 |
| Msa1133310 | MtrunA17_Chr1g0177251 | 82.000 | 50 | 9 | 0 | 13 | 62 | 14 | 63 | 1.14e-25 | 100 |
| Msa1133310 | MtrunA17_Chr2g0283811 | 71.698 | 53 | 15 | 0 | 11 | 63 | 47 | 99 | 1.42e-25 | 97.4 |
| Msa1133310 | MtrunA17_Chr2g0282051 | 78.000 | 50 | 11 | 0 | 9 | 58 | 44 | 93 | 3.11e-25 | 99.4 |
| Msa1133310 | MtrunA17_Chr7g0217581 | 62.857 | 70 | 25 | 1 | 11 | 80 | 232 | 300 | 4.03e-25 | 102 |
| Msa1133310 | MtrunA17_Chr3g0092111 | 57.143 | 77 | 33 | 0 | 11 | 87 | 136 | 212 | 2.30e-24 | 99.8 |
| Msa1133310 | MtrunA17_Chr5g0417601 | 64.615 | 65 | 23 | 0 | 11 | 75 | 140 | 204 | 2.62e-24 | 98.6 |
| Msa1133310 | MtrunA17_Chr7g0254161 | 69.231 | 52 | 16 | 0 | 11 | 62 | 101 | 152 | 2.85e-24 | 99.0 |
| Msa1133310 | MtrunA17_Chr8g0355261 | 69.231 | 52 | 16 | 0 | 11 | 62 | 118 | 169 | 3.59e-24 | 99.0 |
| Msa1133310 | MtrunA17_Chr6g0460731 | 47.561 | 82 | 43 | 0 | 11 | 92 | 96 | 177 | 5.67e-24 | 97.4 |
| Msa1133310 | MtrunA17_Chr5g0417571 | 65.000 | 60 | 20 | 1 | 3 | 62 | 131 | 189 | 7.30e-24 | 96.7 |
| Msa1133310 | MtrunA17_Chr6g0460721 | 32.719 | 217 | 103 | 7 | 11 | 211 | 89 | 278 | 8.29e-24 | 96.7 |
| Msa1133310 | MtrunA17_Chr4g0042481 | 69.231 | 52 | 16 | 0 | 11 | 62 | 122 | 173 | 1.71e-23 | 97.1 |
| Msa1133310 | MtrunA17_Chr5g0417551 | 53.409 | 88 | 35 | 1 | 11 | 92 | 127 | 214 | 8.24e-23 | 94.4 |
| Msa1133310 | MtrunA17_Chr5g0417561 | 56.471 | 85 | 29 | 2 | 11 | 87 | 119 | 203 | 2.31e-22 | 93.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1133310 | AT1G51700.1 | 61.682 | 107 | 38 | 1 | 2 | 105 | 24 | 130 | 3.35e-41 | 139 |
| Msa1133310 | AT3G50410.1 | 73.973 | 73 | 13 | 2 | 1 | 67 | 14 | 86 | 5.34e-33 | 119 |
| Msa1133310 | AT5G66940.1 | 70.423 | 71 | 21 | 0 | 7 | 77 | 28 | 98 | 1.17e-32 | 117 |
| Msa1133310 | AT5G60850.1 | 64.368 | 87 | 27 | 1 | 7 | 93 | 47 | 129 | 1.21e-32 | 120 |
| Msa1133310 | AT5G65590.1 | 42.169 | 166 | 81 | 4 | 7 | 169 | 37 | 190 | 5.34e-31 | 115 |
| Msa1133310 | AT3G21270.1 | 85.965 | 57 | 7 | 1 | 11 | 66 | 29 | 85 | 8.02e-31 | 112 |
| Msa1133310 | AT5G60200.1 | 58.621 | 87 | 34 | 1 | 6 | 90 | 50 | 136 | 9.38e-31 | 114 |
| Msa1133310 | AT3G45610.1 | 46.099 | 141 | 58 | 5 | 2 | 141 | 32 | 155 | 1.67e-30 | 112 |
| Msa1133310 | AT1G07640.1 | 73.438 | 64 | 17 | 0 | 6 | 69 | 16 | 79 | 1.88e-30 | 113 |
| Msa1133310 | AT1G07640.2 | 73.438 | 64 | 17 | 0 | 6 | 69 | 72 | 135 | 3.38e-30 | 114 |
| Msa1133310 | AT1G07640.3 | 73.438 | 64 | 17 | 0 | 6 | 69 | 80 | 143 | 4.72e-30 | 114 |
| Msa1133310 | AT2G28810.2 | 45.600 | 125 | 62 | 1 | 6 | 130 | 72 | 190 | 2.35e-29 | 111 |
| Msa1133310 | AT4G38000.1 | 58.242 | 91 | 33 | 1 | 2 | 92 | 32 | 117 | 2.52e-29 | 109 |
| Msa1133310 | AT2G28810.1 | 45.600 | 125 | 62 | 1 | 6 | 130 | 89 | 207 | 3.37e-29 | 111 |
| Msa1133310 | AT3G52440.1 | 55.208 | 96 | 39 | 1 | 13 | 104 | 27 | 122 | 6.84e-29 | 108 |
| Msa1133310 | AT1G21340.1 | 53.061 | 98 | 43 | 1 | 7 | 101 | 31 | 128 | 7.98e-29 | 108 |
| Msa1133310 | AT3G52440.2 | 55.208 | 96 | 39 | 1 | 13 | 104 | 46 | 141 | 9.44e-29 | 108 |
| Msa1133310 | AT2G37590.1 | 76.364 | 55 | 13 | 0 | 8 | 62 | 86 | 140 | 3.38e-28 | 108 |
| Msa1133310 | AT3G61850.2 | 63.889 | 72 | 19 | 1 | 8 | 79 | 59 | 123 | 3.43e-28 | 107 |
| Msa1133310 | AT3G61850.3 | 63.889 | 72 | 19 | 1 | 8 | 79 | 59 | 123 | 3.43e-28 | 107 |
| Msa1133310 | AT3G61850.1 | 63.889 | 72 | 19 | 1 | 8 | 79 | 71 | 135 | 4.26e-28 | 107 |
| Msa1133310 | AT3G61850.5 | 63.889 | 72 | 19 | 1 | 8 | 79 | 59 | 123 | 4.66e-28 | 108 |
| Msa1133310 | AT3G61850.4 | 63.889 | 72 | 19 | 1 | 8 | 79 | 71 | 135 | 6.48e-28 | 107 |
| Msa1133310 | AT1G28310.1 | 84.615 | 52 | 8 | 0 | 11 | 62 | 27 | 78 | 1.30e-27 | 106 |
| Msa1133310 | AT3G55370.3 | 64.706 | 68 | 23 | 1 | 8 | 75 | 118 | 184 | 1.56e-27 | 107 |
| Msa1133310 | AT3G55370.1 | 67.692 | 65 | 20 | 1 | 11 | 75 | 76 | 139 | 1.58e-27 | 106 |
| Msa1133310 | AT2G28510.1 | 75.806 | 62 | 14 | 1 | 9 | 70 | 46 | 106 | 1.77e-27 | 105 |
| Msa1133310 | AT1G28310.2 | 84.615 | 52 | 8 | 0 | 11 | 62 | 51 | 102 | 1.78e-27 | 107 |
| Msa1133310 | AT3G55370.2 | 67.692 | 65 | 20 | 1 | 11 | 75 | 76 | 139 | 1.88e-27 | 107 |
| Msa1133310 | AT4G24060.1 | 74.138 | 58 | 14 | 1 | 6 | 62 | 47 | 104 | 7.84e-27 | 105 |
| Msa1133310 | AT5G62940.1 | 76.786 | 56 | 13 | 0 | 6 | 61 | 68 | 123 | 1.54e-26 | 105 |
| Msa1133310 | AT5G02460.1 | 76.923 | 52 | 12 | 0 | 11 | 62 | 95 | 146 | 4.68e-26 | 103 |
| Msa1133310 | AT4G00940.1 | 72.414 | 58 | 16 | 0 | 8 | 65 | 65 | 122 | 9.07e-26 | 101 |
| Msa1133310 | AT4G00940.3 | 72.414 | 58 | 16 | 0 | 8 | 65 | 65 | 122 | 9.07e-26 | 101 |
| Msa1133310 | AT4G00940.2 | 72.414 | 58 | 16 | 0 | 8 | 65 | 65 | 122 | 9.07e-26 | 101 |
| Msa1133310 | AT2G46590.1 | 76.471 | 51 | 12 | 0 | 8 | 58 | 65 | 115 | 1.42e-25 | 102 |
| Msa1133310 | AT2G46590.2 | 76.471 | 51 | 12 | 0 | 8 | 58 | 77 | 127 | 1.70e-25 | 102 |
| Msa1133310 | AT1G29160.1 | 73.077 | 52 | 14 | 0 | 11 | 62 | 62 | 113 | 2.39e-25 | 97.4 |
| Msa1133310 | AT4G21050.1 | 80.000 | 50 | 10 | 0 | 13 | 62 | 26 | 75 | 2.58e-25 | 98.6 |
| Msa1133310 | AT2G34140.1 | 73.077 | 52 | 14 | 0 | 11 | 62 | 58 | 109 | 2.93e-25 | 97.1 |
| Msa1133310 | AT1G64620.1 | 75.000 | 56 | 13 | 1 | 6 | 60 | 43 | 98 | 3.05e-25 | 101 |
| Msa1133310 | AT1G69570.1 | 73.077 | 52 | 14 | 0 | 11 | 62 | 132 | 183 | 4.27e-25 | 101 |
| Msa1133310 | AT1G47655.1 | 73.077 | 52 | 14 | 0 | 9 | 60 | 27 | 78 | 5.52e-25 | 97.4 |
| Msa1133310 | AT3G47500.1 | 61.644 | 73 | 27 | 1 | 11 | 83 | 110 | 181 | 1.26e-24 | 100 |
| Msa1133310 | AT5G39660.3 | 73.077 | 52 | 14 | 0 | 11 | 62 | 138 | 189 | 1.19e-23 | 97.8 |
| Msa1133310 | AT5G39660.1 | 73.077 | 52 | 14 | 0 | 11 | 62 | 138 | 189 | 1.19e-23 | 97.8 |
| Msa1133310 | AT5G39660.2 | 73.077 | 52 | 14 | 0 | 11 | 62 | 138 | 189 | 1.19e-23 | 97.8 |
| Msa1133310 | AT1G26790.1 | 69.231 | 52 | 16 | 0 | 11 | 62 | 111 | 162 | 2.02e-23 | 96.7 |
| Msa1133310 | AT5G62430.1 | 50.575 | 87 | 41 | 1 | 11 | 95 | 54 | 140 | 5.12e-23 | 94.4 |
| Msa1133310 | AT4G21040.1 | 68.519 | 54 | 17 | 0 | 13 | 66 | 27 | 80 | 5.32e-23 | 92.8 |
| Msa1133310 | AT4G21080.1 | 51.724 | 87 | 36 | 2 | 13 | 99 | 27 | 107 | 1.62e-22 | 92.0 |
| Msa1133310 | AT4G21030.1 | 65.217 | 46 | 16 | 0 | 13 | 58 | 23 | 68 | 3.27e-14 | 68.6 |
Find 80 sgRNAs with CRISPR-Local
Find 222 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCTAATTTGTACAAGTTTA+TGG | 0.152234 | 7_3:-86615305 | Msa1133310:CDS |
| GGACTAAAGGTGGTGCTTTA+AGG | 0.163122 | 7_3:-86615911 | Msa1133310:CDS |
| AGCTTTAATCAAATGGATTT+TGG | 0.164063 | 7_3:-86614793 | Msa1133310:three_prime_UTR |
| GATCAATATGGACTAATTTA+TGG | 0.171238 | 7_3:-86614848 | Msa1133310:three_prime_UTR |
| TGTTCTTGTTCTGGAAAATT+TGG | 0.207790 | 7_3:+86616038 | None:intergenic |
| TTGAAGCATCCATGGATATT+TGG | 0.225593 | 7_3:-86615040 | Msa1133310:three_prime_UTR |
| ATCTTTCTTGGTTTGCAAAA+TGG | 0.257606 | 7_3:-86615514 | Msa1133310:CDS |
| TTCTGGAAAATTTGGTTTCA+TGG | 0.271012 | 7_3:+86616046 | None:intergenic |
| CATTTGAGTTGTTCTTGTTC+TGG | 0.291270 | 7_3:+86616029 | None:intergenic |
| GATCATTATATCTAGATGTT+TGG | 0.291315 | 7_3:-86614996 | Msa1133310:three_prime_UTR |
| CCCGGTTGTGAATACGGATT+TGG | 0.293449 | 7_3:-86615572 | Msa1133310:CDS |
| GGGGAATCAGAGATCTTTCT+TGG | 0.299700 | 7_3:-86615526 | Msa1133310:CDS |
| ATCATTATATCTAGATGTTT+GGG | 0.302778 | 7_3:-86614995 | Msa1133310:three_prime_UTR |
| CACCCGGGTCAACATGAATC+TGG | 0.303329 | 7_3:+86615736 | None:intergenic |
| AAATGGGTCGGGTTTGAAAA+TGG | 0.305819 | 7_3:-86615632 | Msa1133310:CDS |
| CATAACCCGGGTGGTAGAAA+TGG | 0.353048 | 7_3:-86615547 | Msa1133310:CDS |
| TGAATGCTACATTGATGATT+AGG | 0.361415 | 7_3:-86615099 | Msa1133310:CDS |
| GGGTTTGAAAATGGTGGAAA+TGG | 0.363325 | 7_3:-86615623 | Msa1133310:CDS |
| TGACAAGGTACATACAAATA+AGG | 0.364317 | 7_3:+86614922 | None:intergenic |
| TTTGAAGGTCTGAATTCAAA+TGG | 0.368494 | 7_3:-86615649 | Msa1133310:intron |
| ATTAGGATGATCATGTAAAT+TGG | 0.391613 | 7_3:-86615082 | Msa1133310:exon |
| GTTGTTTAGCTTTAATCAAA+TGG | 0.393939 | 7_3:-86614800 | Msa1133310:three_prime_UTR |
| ATGGTGGAAATGGGTGAATT+TGG | 0.397617 | 7_3:-86615613 | Msa1133310:CDS |
| CCCAAATCCGTATTCACAAC+CGG | 0.400363 | 7_3:+86615571 | None:intergenic |
| ATTTGTATGTACCTTGTCAA+TGG | 0.415823 | 7_3:-86614918 | Msa1133310:three_prime_UTR |
| ATAACCCGGGTGGTAGAAAT+GGG | 0.416940 | 7_3:-86615546 | Msa1133310:CDS |
| AGATGGTGTTGTTGAACGTT+TGG | 0.432656 | 7_3:+86615836 | None:intergenic |
| CTGTGACCCGGTTGTGAATA+CGG | 0.450073 | 7_3:-86615578 | Msa1133310:CDS |
| ACAACTGAAAGTTTCCATCT+TGG | 0.452417 | 7_3:-86614887 | Msa1133310:three_prime_UTR |
| TTTCTTGTTCCACCACCAAC+TGG | 0.453104 | 7_3:+86615882 | None:intergenic |
| CCGGTTGTGAATACGGATTT+GGG | 0.453312 | 7_3:-86615571 | Msa1133310:CDS |
| TAAAGCTAAACAACAAAGAA+TGG | 0.458673 | 7_3:+86614809 | None:intergenic |
| TGCAAAAGATATTGGACTAA+AGG | 0.473852 | 7_3:-86615924 | Msa1133310:CDS |
| TAAACAACAAAGAATGGAAA+AGG | 0.483664 | 7_3:+86614815 | None:intergenic |
| TCTGGAAAATTTGGTTTCAT+GGG | 0.485487 | 7_3:+86616047 | None:intergenic |
| TACGGATTTGGGTCATAACC+CGG | 0.489454 | 7_3:-86615560 | Msa1133310:CDS |
| GTTTATGGATTTGTATGCCA+TGG | 0.493033 | 7_3:-86615290 | Msa1133310:CDS |
| TTGAAGGTCTGAATTCAAAT+GGG | 0.494568 | 7_3:-86615648 | Msa1133310:intron |
| GGTTTGAAAATGGTGGAAAT+GGG | 0.507050 | 7_3:-86615622 | Msa1133310:CDS |
| TAAAATAACAATCACCAAGA+TGG | 0.508289 | 7_3:+86614873 | None:intergenic |
| GGTCTGAATTCAAATGGGTC+GGG | 0.510843 | 7_3:-86615643 | Msa1133310:CDS |
| TTTCTTGGTTTGCAAAATGG+TGG | 0.514745 | 7_3:-86615511 | Msa1133310:CDS |
| TCTAGATGTTTGGGAATGGA+AGG | 0.523990 | 7_3:-86614986 | Msa1133310:three_prime_UTR |
| TATATCTAGATGTTTGGGAA+TGG | 0.528010 | 7_3:-86614990 | Msa1133310:three_prime_UTR |
| AGGTCTGAATTCAAATGGGT+CGG | 0.529995 | 7_3:-86615644 | Msa1133310:CDS |
| GAATGGAAGGGATGATACAT+TGG | 0.531407 | 7_3:-86614973 | Msa1133310:three_prime_UTR |
| AACTGTTGGAATGATAATCA+TGG | 0.536064 | 7_3:-86615484 | Msa1133310:intron |
| GACCCAGATTCATGTTGACC+CGG | 0.541258 | 7_3:-86615739 | Msa1133310:CDS |
| GGTCAACATGAATCTGGGTC+GGG | 0.542667 | 7_3:+86615742 | None:intergenic |
| GATTCCCCATTTCTACCACC+CGG | 0.543789 | 7_3:+86615541 | None:intergenic |
| ACCCGGGTCAACATGAATCT+GGG | 0.549644 | 7_3:+86615737 | None:intergenic |
| CATGGATGCTTCAAATGACT+AGG | 0.553959 | 7_3:+86615049 | None:intergenic |
| TGCAAGCTTCCAAATATCCA+TGG | 0.554552 | 7_3:+86615031 | None:intergenic |
| CTAGTCATTTGAAGCATCCA+TGG | 0.558061 | 7_3:-86615048 | Msa1133310:three_prime_UTR |
| TGTATGTACCTTGTCAATGG+AGG | 0.565053 | 7_3:-86614915 | Msa1133310:three_prime_UTR |
| AAAATGGTGGTTCAAACTGT+TGG | 0.566836 | 7_3:-86615498 | Msa1133310:CDS |
| GTATGTACCTTGTCAATGGA+GGG | 0.571207 | 7_3:-86614914 | Msa1133310:three_prime_UTR |
| AGGAACATACCAGTTGGTGG+TGG | 0.578156 | 7_3:-86615891 | Msa1133310:CDS |
| TCACTAAAGAAGTATCCTCT+AGG | 0.579105 | 7_3:-86615247 | Msa1133310:intron |
| TGAGAATTTGAACTGTGACC+CGG | 0.580599 | 7_3:-86615590 | Msa1133310:CDS |
| GGGTCAACATGAATCTGGGT+CGG | 0.590125 | 7_3:+86615741 | None:intergenic |
| CCAAATCCGTATTCACAACC+GGG | 0.603508 | 7_3:+86615572 | None:intergenic |
| TTAAGGAACATACCAGTTGG+TGG | 0.605626 | 7_3:-86615894 | Msa1133310:CDS |
| GAACTGGTGGTTGATGCTGA+TGG | 0.606565 | 7_3:+86615804 | None:intergenic |
| AAAGTTCAGATAGTGACGTA+TGG | 0.614028 | 7_3:-86614950 | Msa1133310:three_prime_UTR |
| TGTCAATGTATGATCCTCCA+TGG | 0.614549 | 7_3:+86615273 | None:intergenic |
| AAAAGATATTGGACTAAAGG+TGG | 0.614735 | 7_3:-86615921 | Msa1133310:CDS |
| CTAGATGTTTGGGAATGGAA+GGG | 0.623527 | 7_3:-86614985 | Msa1133310:three_prime_UTR |
| TATGGATTTGTATGCCATGG+AGG | 0.623616 | 7_3:-86615287 | Msa1133310:CDS |
| GCTTTAAGGAACATACCAGT+TGG | 0.625252 | 7_3:-86615897 | Msa1133310:CDS |
| ACGGATTTGGGTCATAACCC+GGG | 0.629532 | 7_3:-86615559 | Msa1133310:CDS |
| ACCCAGATTCATGTTGACCC+GGG | 0.637927 | 7_3:-86615738 | Msa1133310:intron |
| ATTCCCCATTTCTACCACCC+GGG | 0.643173 | 7_3:+86615542 | None:intergenic |
| GCTGATGGAGAAGATGAAGA+TGG | 0.658893 | 7_3:+86615819 | None:intergenic |
| TGTCATGCCCTCCATTGACA+AGG | 0.664031 | 7_3:+86614907 | None:intergenic |
| TGGGTCGGGTTTGAAAATGG+TGG | 0.664103 | 7_3:-86615629 | Msa1133310:CDS |
| TGGAGGATCATACATTGACA+AGG | 0.693266 | 7_3:-86615270 | Msa1133310:CDS |
| TAACCCGGGTGGTAGAAATG+GGG | 0.710853 | 7_3:-86615545 | Msa1133310:CDS |
| GTGTTGCTTGATTCACAACG+TGG | 0.731087 | 7_3:+86616005 | None:intergenic |
| GATTTGGGTCATAACCCGGG+TGG | 0.768929 | 7_3:-86615556 | Msa1133310:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAAATGATTTTTTTTCTTT+TGG | - | chr7_3:86615701-86615720 | Msa1133310:intron | 10.0% |
| !!! | AAAATGATTTTTTTTCTTTT+GGG | - | chr7_3:86615702-86615721 | Msa1133310:intron | 10.0% |
| !!! | AAAAATGATTTTTTTTCTTT+TGG | - | chr7_3:86615701-86615720 | Msa1133310:intron | 10.0% |
| !!! | AAAATGATTTTTTTTCTTTT+GGG | - | chr7_3:86615702-86615721 | Msa1133310:intron | 10.0% |
| !! | TACTCATAATAATTATACTA+TGG | - | chr7_3:86615494-86615513 | Msa1133310:CDS | 15.0% |
| !! | TACTCATAATAATTATACTA+TGG | - | chr7_3:86615494-86615513 | Msa1133310:CDS | 15.0% |
| !!! | AAAAAATTGAGCCTTTTTTA+TGG | - | chr7_3:86615427-86615446 | Msa1133310:intron | 20.0% |
| !! | ACTAAATTAAGCCATAAAAA+AGG | + | chr7_3:86615441-86615460 | None:intergenic | 20.0% |
| !!! | ATCTAATTTGTACAAGTTTA+TGG | - | chr7_3:86615531-86615550 | Msa1133310:CDS | 20.0% |
| !! | AAAAAAAAACATTTACCTAG+AGG | + | chr7_3:86615607-86615626 | None:intergenic | 20.0% |
| !! | ATCATTATATCTAGATGTTT+GGG | - | chr7_3:86615841-86615860 | Msa1133310:CDS | 20.0% |
| !!! | TGTTATTTTACTGATCAATA+TGG | - | chr7_3:86615976-86615995 | Msa1133310:CDS | 20.0% |
| !!! | AAAAAATTGAGCCTTTTTTA+TGG | - | chr7_3:86615427-86615446 | Msa1133310:intron | 20.0% |
| !! | ACTAAATTAAGCCATAAAAA+AGG | + | chr7_3:86615441-86615460 | None:intergenic | 20.0% |
| !!! | ATCTAATTTGTACAAGTTTA+TGG | - | chr7_3:86615531-86615550 | Msa1133310:CDS | 20.0% |
| !! | AAAAAAAAACATTTACCTAG+AGG | + | chr7_3:86615607-86615626 | None:intergenic | 20.0% |
| !! | ATCATTATATCTAGATGTTT+GGG | - | chr7_3:86615841-86615860 | Msa1133310:CDS | 20.0% |
| !!! | TGTTATTTTACTGATCAATA+TGG | - | chr7_3:86615976-86615995 | Msa1133310:CDS | 20.0% |
| !! | TTTTGCAGTTTTTGCAAAAA+TGG | + | chr7_3:86614899-86614918 | None:intergenic | 25.0% |
| !!! | TTTTTTTTTCATTACCACCA+TGG | + | chr7_3:86615686-86615705 | None:intergenic | 25.0% |
| !!! | TGATTTTTTTTCTTTTGGGT+AGG | - | chr7_3:86615706-86615725 | Msa1133310:intron | 25.0% |
| !!! | GATTTTTTTTCTTTTGGGTA+GGG | - | chr7_3:86615707-86615726 | Msa1133310:intron | 25.0% |
| ! | ATTAGGATGATCATGTAAAT+TGG | - | chr7_3:86615754-86615773 | Msa1133310:CDS | 25.0% |
| ! | GATCATTATATCTAGATGTT+TGG | - | chr7_3:86615840-86615859 | Msa1133310:CDS | 25.0% |
| ! | TAAAATAACAATCACCAAGA+TGG | + | chr7_3:86615966-86615985 | None:intergenic | 25.0% |
| !! | GATCAATATGGACTAATTTA+TGG | - | chr7_3:86615988-86616007 | Msa1133310:CDS | 25.0% |
| ! | TAAACAACAAAGAATGGAAA+AGG | + | chr7_3:86616024-86616043 | None:intergenic | 25.0% |
| ! | TAAAGCTAAACAACAAAGAA+TGG | + | chr7_3:86616030-86616049 | None:intergenic | 25.0% |
| !!! | GTTGTTTAGCTTTAATCAAA+TGG | - | chr7_3:86616036-86616055 | Msa1133310:CDS | 25.0% |
| !!! | AGCTTTAATCAAATGGATTT+TGG | - | chr7_3:86616043-86616062 | Msa1133310:CDS | 25.0% |
| !! | TTTTGCAGTTTTTGCAAAAA+TGG | + | chr7_3:86614899-86614918 | None:intergenic | 25.0% |
| !!! | TTTTTTTTTCATTACCACCA+TGG | + | chr7_3:86615686-86615705 | None:intergenic | 25.0% |
| !!! | TGATTTTTTTTCTTTTGGGT+AGG | - | chr7_3:86615706-86615725 | Msa1133310:intron | 25.0% |
| !!! | GATTTTTTTTCTTTTGGGTA+GGG | - | chr7_3:86615707-86615726 | Msa1133310:intron | 25.0% |
| ! | ATTAGGATGATCATGTAAAT+TGG | - | chr7_3:86615754-86615773 | Msa1133310:CDS | 25.0% |
| ! | GATCATTATATCTAGATGTT+TGG | - | chr7_3:86615840-86615859 | Msa1133310:CDS | 25.0% |
| ! | TAAAATAACAATCACCAAGA+TGG | + | chr7_3:86615966-86615985 | None:intergenic | 25.0% |
| !! | GATCAATATGGACTAATTTA+TGG | - | chr7_3:86615988-86616007 | Msa1133310:CDS | 25.0% |
| ! | TAAACAACAAAGAATGGAAA+AGG | + | chr7_3:86616024-86616043 | None:intergenic | 25.0% |
| ! | TAAAGCTAAACAACAAAGAA+TGG | + | chr7_3:86616030-86616049 | None:intergenic | 25.0% |
| !!! | GTTGTTTAGCTTTAATCAAA+TGG | - | chr7_3:86616036-86616055 | Msa1133310:CDS | 25.0% |
| !!! | AGCTTTAATCAAATGGATTT+TGG | - | chr7_3:86616043-86616062 | Msa1133310:CDS | 25.0% |
| !! | TGTTCTTGTTCTGGAAAATT+TGG | + | chr7_3:86614801-86614820 | None:intergenic | 30.0% |
| GCAAAAACTGCAAAAGATAT+TGG | - | chr7_3:86614904-86614923 | Msa1133310:three_prime_UTR | 30.0% | |
| TGCAAAAGATATTGGACTAA+AGG | - | chr7_3:86614912-86614931 | Msa1133310:three_prime_UTR | 30.0% | |
| AAAAGATATTGGACTAAAGG+TGG | - | chr7_3:86614915-86614934 | Msa1133310:three_prime_UTR | 30.0% | |
| TTGAATTCAGACCTTCAAAA+AGG | + | chr7_3:86615186-86615205 | None:intergenic | 30.0% | |
| TTTGAAGGTCTGAATTCAAA+TGG | - | chr7_3:86615187-86615206 | Msa1133310:intron | 30.0% | |
| TTGAAGGTCTGAATTCAAAT+GGG | - | chr7_3:86615188-86615207 | Msa1133310:intron | 30.0% | |
| !! | ATCTTTCTTGGTTTGCAAAA+TGG | - | chr7_3:86615322-86615341 | Msa1133310:intron | 30.0% |
| AACTGTTGGAATGATAATCA+TGG | - | chr7_3:86615352-86615371 | Msa1133310:intron | 30.0% | |
| ! | TGAATGCTACATTGATGATT+AGG | - | chr7_3:86615737-86615756 | Msa1133310:intron | 30.0% |
| TATATCTAGATGTTTGGGAA+TGG | - | chr7_3:86615846-86615865 | Msa1133310:CDS | 30.0% | |
| TGACAAGGTACATACAAATA+AGG | + | chr7_3:86615917-86615936 | None:intergenic | 30.0% | |
| ATTTGTATGTACCTTGTCAA+TGG | - | chr7_3:86615918-86615937 | Msa1133310:CDS | 30.0% | |
| !! | TGTTCTTGTTCTGGAAAATT+TGG | + | chr7_3:86614801-86614820 | None:intergenic | 30.0% |
| GCAAAAACTGCAAAAGATAT+TGG | - | chr7_3:86614904-86614923 | Msa1133310:three_prime_UTR | 30.0% | |
| TGCAAAAGATATTGGACTAA+AGG | - | chr7_3:86614912-86614931 | Msa1133310:three_prime_UTR | 30.0% | |
| AAAAGATATTGGACTAAAGG+TGG | - | chr7_3:86614915-86614934 | Msa1133310:three_prime_UTR | 30.0% | |
| TTGAATTCAGACCTTCAAAA+AGG | + | chr7_3:86615186-86615205 | None:intergenic | 30.0% | |
| TTTGAAGGTCTGAATTCAAA+TGG | - | chr7_3:86615187-86615206 | Msa1133310:intron | 30.0% | |
| TTGAAGGTCTGAATTCAAAT+GGG | - | chr7_3:86615188-86615207 | Msa1133310:intron | 30.0% | |
| !! | ATCTTTCTTGGTTTGCAAAA+TGG | - | chr7_3:86615322-86615341 | Msa1133310:intron | 30.0% |
| AACTGTTGGAATGATAATCA+TGG | - | chr7_3:86615352-86615371 | Msa1133310:intron | 30.0% | |
| ! | TGAATGCTACATTGATGATT+AGG | - | chr7_3:86615737-86615756 | Msa1133310:intron | 30.0% |
| TATATCTAGATGTTTGGGAA+TGG | - | chr7_3:86615846-86615865 | Msa1133310:CDS | 30.0% | |
| TGACAAGGTACATACAAATA+AGG | + | chr7_3:86615917-86615936 | None:intergenic | 30.0% | |
| ATTTGTATGTACCTTGTCAA+TGG | - | chr7_3:86615918-86615937 | Msa1133310:CDS | 30.0% | |
| !! | CATTTGAGTTGTTCTTGTTC+TGG | + | chr7_3:86614810-86614829 | None:intergenic | 35.0% |
| ! | GGTTTGAAAATGGTGGAAAT+GGG | - | chr7_3:86615214-86615233 | Msa1133310:intron | 35.0% |
| !! | TTTCTTGGTTTGCAAAATGG+TGG | - | chr7_3:86615325-86615344 | Msa1133310:intron | 35.0% |
| AAAATGGTGGTTCAAACTGT+TGG | - | chr7_3:86615338-86615357 | Msa1133310:intron | 35.0% | |
| GTTGGAATGATAATCATGGT+TGG | - | chr7_3:86615356-86615375 | Msa1133310:intron | 35.0% | |
| ! | ATCTTGCTATATACACTCCT+AGG | - | chr7_3:86615383-86615402 | Msa1133310:intron | 35.0% |
| ! | ATCTACTGATAAGTTGACCT+AGG | + | chr7_3:86615403-86615422 | None:intergenic | 35.0% |
| GTTTATGGATTTGTATGCCA+TGG | - | chr7_3:86615546-86615565 | Msa1133310:CDS | 35.0% | |
| !! | TCACTAAAGAAGTATCCTCT+AGG | - | chr7_3:86615589-86615608 | Msa1133310:CDS | 35.0% |
| TATATCTGCATGCTTGTGAA+TGG | - | chr7_3:86615651-86615670 | Msa1133310:intron | 35.0% | |
| ! | TTGAAGCATCCATGGATATT+TGG | - | chr7_3:86615796-86615815 | Msa1133310:CDS | 35.0% |
| AAAGTTCAGATAGTGACGTA+TGG | - | chr7_3:86615886-86615905 | Msa1133310:CDS | 35.0% | |
| ACAACTGAAAGTTTCCATCT+TGG | - | chr7_3:86615949-86615968 | Msa1133310:CDS | 35.0% | |
| !! | CATTTGAGTTGTTCTTGTTC+TGG | + | chr7_3:86614810-86614829 | None:intergenic | 35.0% |
| ! | GGTTTGAAAATGGTGGAAAT+GGG | - | chr7_3:86615214-86615233 | Msa1133310:intron | 35.0% |
| !! | TTTCTTGGTTTGCAAAATGG+TGG | - | chr7_3:86615325-86615344 | Msa1133310:intron | 35.0% |
| AAAATGGTGGTTCAAACTGT+TGG | - | chr7_3:86615338-86615357 | Msa1133310:intron | 35.0% | |
| GTTGGAATGATAATCATGGT+TGG | - | chr7_3:86615356-86615375 | Msa1133310:intron | 35.0% | |
| ! | ATCTTGCTATATACACTCCT+AGG | - | chr7_3:86615383-86615402 | Msa1133310:intron | 35.0% |
| ! | ATCTACTGATAAGTTGACCT+AGG | + | chr7_3:86615403-86615422 | None:intergenic | 35.0% |
| GTTTATGGATTTGTATGCCA+TGG | - | chr7_3:86615546-86615565 | Msa1133310:CDS | 35.0% | |
| !! | TCACTAAAGAAGTATCCTCT+AGG | - | chr7_3:86615589-86615608 | Msa1133310:CDS | 35.0% |
| TATATCTGCATGCTTGTGAA+TGG | - | chr7_3:86615651-86615670 | Msa1133310:intron | 35.0% | |
| ! | TTGAAGCATCCATGGATATT+TGG | - | chr7_3:86615796-86615815 | Msa1133310:CDS | 35.0% |
| AAAGTTCAGATAGTGACGTA+TGG | - | chr7_3:86615886-86615905 | Msa1133310:CDS | 35.0% | |
| ACAACTGAAAGTTTCCATCT+TGG | - | chr7_3:86615949-86615968 | Msa1133310:CDS | 35.0% | |
| ! | CAGTTTTTGCAAAAATGGCG+TGG | + | chr7_3:86614894-86614913 | None:intergenic | 40.0% |
| !! | GCTTTAAGGAACATACCAGT+TGG | - | chr7_3:86614939-86614958 | Msa1133310:three_prime_UTR | 40.0% |
| TTAAGGAACATACCAGTTGG+TGG | - | chr7_3:86614942-86614961 | Msa1133310:three_prime_UTR | 40.0% | |
| !! | AGATGGTGTTGTTGAACGTT+TGG | + | chr7_3:86615003-86615022 | None:intergenic | 40.0% |
| ! | AACTTTTGCTGCTGAAGAAC+TGG | + | chr7_3:86615051-86615070 | None:intergenic | 40.0% |
| TTGCATCAACTGAGCGATTT+GGG | - | chr7_3:86615158-86615177 | Msa1133310:intron | 40.0% | |
| !! | CGATTTGGGAACCTTTTTGA+AGG | - | chr7_3:86615172-86615191 | Msa1133310:intron | 40.0% |
| AGGTCTGAATTCAAATGGGT+CGG | - | chr7_3:86615192-86615211 | Msa1133310:intron | 40.0% | |
| AAATGGGTCGGGTTTGAAAA+TGG | - | chr7_3:86615204-86615223 | Msa1133310:intron | 40.0% | |
| ! | GGGTTTGAAAATGGTGGAAA+TGG | - | chr7_3:86615213-86615232 | Msa1133310:intron | 40.0% |
| ! | ATGGTGGAAATGGGTGAATT+TGG | - | chr7_3:86615223-86615242 | Msa1133310:intron | 40.0% |
| TGAGAATTTGAACTGTGACC+CGG | - | chr7_3:86615246-86615265 | Msa1133310:intron | 40.0% | |
| TATGGATTTGTATGCCATGG+AGG | - | chr7_3:86615549-86615568 | Msa1133310:CDS | 40.0% | |
| TGTCAATGTATGATCCTCCA+TGG | + | chr7_3:86615566-86615585 | None:intergenic | 40.0% | |
| TGGAGGATCATACATTGACA+AGG | - | chr7_3:86615566-86615585 | Msa1133310:CDS | 40.0% | |
| CATGGATGCTTCAAATGACT+AGG | + | chr7_3:86615790-86615809 | None:intergenic | 40.0% | |
| ! | CTAGTCATTTGAAGCATCCA+TGG | - | chr7_3:86615788-86615807 | Msa1133310:CDS | 40.0% |
| TGCAAGCTTCCAAATATCCA+TGG | + | chr7_3:86615808-86615827 | None:intergenic | 40.0% | |
| TCTAGATGTTTGGGAATGGA+AGG | - | chr7_3:86615850-86615869 | Msa1133310:CDS | 40.0% | |
| CTAGATGTTTGGGAATGGAA+GGG | - | chr7_3:86615851-86615870 | Msa1133310:CDS | 40.0% | |
| GAATGGAAGGGATGATACAT+TGG | - | chr7_3:86615863-86615882 | Msa1133310:CDS | 40.0% | |
| TGTATGTACCTTGTCAATGG+AGG | - | chr7_3:86615921-86615940 | Msa1133310:CDS | 40.0% | |
| GTATGTACCTTGTCAATGGA+GGG | - | chr7_3:86615922-86615941 | Msa1133310:CDS | 40.0% | |
| ! | CAGTTTTTGCAAAAATGGCG+TGG | + | chr7_3:86614894-86614913 | None:intergenic | 40.0% |
| !! | GCTTTAAGGAACATACCAGT+TGG | - | chr7_3:86614939-86614958 | Msa1133310:three_prime_UTR | 40.0% |
| TTAAGGAACATACCAGTTGG+TGG | - | chr7_3:86614942-86614961 | Msa1133310:three_prime_UTR | 40.0% | |
| !! | AGATGGTGTTGTTGAACGTT+TGG | + | chr7_3:86615003-86615022 | None:intergenic | 40.0% |
| ! | AACTTTTGCTGCTGAAGAAC+TGG | + | chr7_3:86615051-86615070 | None:intergenic | 40.0% |
| TTGCATCAACTGAGCGATTT+GGG | - | chr7_3:86615158-86615177 | Msa1133310:intron | 40.0% | |
| !! | CGATTTGGGAACCTTTTTGA+AGG | - | chr7_3:86615172-86615191 | Msa1133310:intron | 40.0% |
| AGGTCTGAATTCAAATGGGT+CGG | - | chr7_3:86615192-86615211 | Msa1133310:intron | 40.0% | |
| AAATGGGTCGGGTTTGAAAA+TGG | - | chr7_3:86615204-86615223 | Msa1133310:intron | 40.0% | |
| ! | GGGTTTGAAAATGGTGGAAA+TGG | - | chr7_3:86615213-86615232 | Msa1133310:intron | 40.0% |
| ! | ATGGTGGAAATGGGTGAATT+TGG | - | chr7_3:86615223-86615242 | Msa1133310:intron | 40.0% |
| TGAGAATTTGAACTGTGACC+CGG | - | chr7_3:86615246-86615265 | Msa1133310:intron | 40.0% | |
| TATGGATTTGTATGCCATGG+AGG | - | chr7_3:86615549-86615568 | Msa1133310:CDS | 40.0% | |
| TGTCAATGTATGATCCTCCA+TGG | + | chr7_3:86615566-86615585 | None:intergenic | 40.0% | |
| TGGAGGATCATACATTGACA+AGG | - | chr7_3:86615566-86615585 | Msa1133310:CDS | 40.0% | |
| CATGGATGCTTCAAATGACT+AGG | + | chr7_3:86615790-86615809 | None:intergenic | 40.0% | |
| ! | CTAGTCATTTGAAGCATCCA+TGG | - | chr7_3:86615788-86615807 | Msa1133310:CDS | 40.0% |
| TGCAAGCTTCCAAATATCCA+TGG | + | chr7_3:86615808-86615827 | None:intergenic | 40.0% | |
| TCTAGATGTTTGGGAATGGA+AGG | - | chr7_3:86615850-86615869 | Msa1133310:CDS | 40.0% | |
| CTAGATGTTTGGGAATGGAA+GGG | - | chr7_3:86615851-86615870 | Msa1133310:CDS | 40.0% | |
| GAATGGAAGGGATGATACAT+TGG | - | chr7_3:86615863-86615882 | Msa1133310:CDS | 40.0% | |
| TGTATGTACCTTGTCAATGG+AGG | - | chr7_3:86615921-86615940 | Msa1133310:CDS | 40.0% | |
| GTATGTACCTTGTCAATGGA+GGG | - | chr7_3:86615922-86615941 | Msa1133310:CDS | 40.0% | |
| !! | GTGTTGCTTGATTCACAACG+TGG | + | chr7_3:86614834-86614853 | None:intergenic | 45.0% |
| GGACTAAAGGTGGTGCTTTA+AGG | - | chr7_3:86614925-86614944 | Msa1133310:three_prime_UTR | 45.0% | |
| TTTCTTGTTCCACCACCAAC+TGG | + | chr7_3:86614957-86614976 | None:intergenic | 45.0% | |
| GCTGATGGAGAAGATGAAGA+TGG | + | chr7_3:86615020-86615039 | None:intergenic | 45.0% | |
| ! | TTTTGCTGCTGAAGAACTGG+TGG | + | chr7_3:86615048-86615067 | None:intergenic | 45.0% |
| CTTGCATCAACTGAGCGATT+TGG | - | chr7_3:86615157-86615176 | Msa1133310:intron | 45.0% | |
| GGTCTGAATTCAAATGGGTC+GGG | - | chr7_3:86615193-86615212 | Msa1133310:intron | 45.0% | |
| CCAAATCCGTATTCACAACC+GGG | + | chr7_3:86615267-86615286 | None:intergenic | 45.0% | |
| CCCAAATCCGTATTCACAAC+CGG | + | chr7_3:86615268-86615287 | None:intergenic | 45.0% | |
| CCGGTTGTGAATACGGATTT+GGG | - | chr7_3:86615265-86615284 | Msa1133310:CDS | 45.0% | |
| TACGGATTTGGGTCATAACC+CGG | - | chr7_3:86615276-86615295 | Msa1133310:CDS | 45.0% | |
| ATAACCCGGGTGGTAGAAAT+GGG | - | chr7_3:86615290-86615309 | Msa1133310:CDS | 45.0% | |
| GGGGAATCAGAGATCTTTCT+TGG | - | chr7_3:86615310-86615329 | Msa1133310:CDS | 45.0% | |
| !! | GTGAATGGTGCTGTTTACCA+TGG | - | chr7_3:86615666-86615685 | Msa1133310:intron | 45.0% |
| !! | AATGGTGCTGTTTACCATGG+TGG | - | chr7_3:86615669-86615688 | Msa1133310:intron | 45.0% |
| !! | GTGTTGCTTGATTCACAACG+TGG | + | chr7_3:86614834-86614853 | None:intergenic | 45.0% |
| GGACTAAAGGTGGTGCTTTA+AGG | - | chr7_3:86614925-86614944 | Msa1133310:three_prime_UTR | 45.0% | |
| TTTCTTGTTCCACCACCAAC+TGG | + | chr7_3:86614957-86614976 | None:intergenic | 45.0% | |
| GCTGATGGAGAAGATGAAGA+TGG | + | chr7_3:86615020-86615039 | None:intergenic | 45.0% | |
| ! | TTTTGCTGCTGAAGAACTGG+TGG | + | chr7_3:86615048-86615067 | None:intergenic | 45.0% |
| CTTGCATCAACTGAGCGATT+TGG | - | chr7_3:86615157-86615176 | Msa1133310:intron | 45.0% | |
| GGTCTGAATTCAAATGGGTC+GGG | - | chr7_3:86615193-86615212 | Msa1133310:intron | 45.0% | |
| CCAAATCCGTATTCACAACC+GGG | + | chr7_3:86615267-86615286 | None:intergenic | 45.0% | |
| CCCAAATCCGTATTCACAAC+CGG | + | chr7_3:86615268-86615287 | None:intergenic | 45.0% | |
| CCGGTTGTGAATACGGATTT+GGG | - | chr7_3:86615265-86615284 | Msa1133310:CDS | 45.0% | |
| TACGGATTTGGGTCATAACC+CGG | - | chr7_3:86615276-86615295 | Msa1133310:CDS | 45.0% | |
| ATAACCCGGGTGGTAGAAAT+GGG | - | chr7_3:86615290-86615309 | Msa1133310:CDS | 45.0% | |
| GGGGAATCAGAGATCTTTCT+TGG | - | chr7_3:86615310-86615329 | Msa1133310:CDS | 45.0% | |
| !! | GTGAATGGTGCTGTTTACCA+TGG | - | chr7_3:86615666-86615685 | Msa1133310:intron | 45.0% |
| !! | AATGGTGCTGTTTACCATGG+TGG | - | chr7_3:86615669-86615688 | Msa1133310:intron | 45.0% |
| !! | AGGAACATACCAGTTGGTGG+TGG | - | chr7_3:86614945-86614964 | Msa1133310:three_prime_UTR | 50.0% |
| ! | GAACTGGTGGTTGATGCTGA+TGG | + | chr7_3:86615035-86615054 | None:intergenic | 50.0% |
| GGTCAACATGAATCTGGGTC+GGG | + | chr7_3:86615097-86615116 | None:intergenic | 50.0% | |
| GGGTCAACATGAATCTGGGT+CGG | + | chr7_3:86615098-86615117 | None:intergenic | 50.0% | |
| GACCCAGATTCATGTTGACC+CGG | - | chr7_3:86615097-86615116 | Msa1133310:CDS | 50.0% | |
| ACCCAGATTCATGTTGACCC+GGG | - | chr7_3:86615098-86615117 | Msa1133310:CDS | 50.0% | |
| ACCCGGGTCAACATGAATCT+GGG | + | chr7_3:86615102-86615121 | None:intergenic | 50.0% | |
| CACCAAAATTCCTCTCACCC+GGG | + | chr7_3:86615118-86615137 | None:intergenic | 50.0% | |
| CCACCAAAATTCCTCTCACC+CGG | + | chr7_3:86615119-86615138 | None:intergenic | 50.0% | |
| !! | CGGGTGAGAGGAATTTTGGT+GGG | - | chr7_3:86615117-86615136 | Msa1133310:intron | 50.0% |
| !! | GGGTGAGAGGAATTTTGGTG+GGG | - | chr7_3:86615118-86615137 | Msa1133310:intron | 50.0% |
| !! | GGTGAGAGGAATTTTGGTGG+GGG | - | chr7_3:86615119-86615138 | Msa1133310:intron | 50.0% |
| TGGGTCGGGTTTGAAAATGG+TGG | - | chr7_3:86615207-86615226 | Msa1133310:intron | 50.0% | |
| CTGTGACCCGGTTGTGAATA+CGG | - | chr7_3:86615258-86615277 | Msa1133310:CDS | 50.0% | |
| CCCGGTTGTGAATACGGATT+TGG | - | chr7_3:86615264-86615283 | Msa1133310:CDS | 50.0% | |
| ACGGATTTGGGTCATAACCC+GGG | - | chr7_3:86615277-86615296 | Msa1133310:CDS | 50.0% | |
| CATAACCCGGGTGGTAGAAA+TGG | - | chr7_3:86615289-86615308 | Msa1133310:CDS | 50.0% | |
| TAACCCGGGTGGTAGAAATG+GGG | - | chr7_3:86615291-86615310 | Msa1133310:CDS | 50.0% | |
| ATTCCCCATTTCTACCACCC+GGG | + | chr7_3:86615297-86615316 | None:intergenic | 50.0% | |
| GATTCCCCATTTCTACCACC+CGG | + | chr7_3:86615298-86615317 | None:intergenic | 50.0% | |
| TGTCATGCCCTCCATTGACA+AGG | + | chr7_3:86615932-86615951 | None:intergenic | 50.0% | |
| !! | AGGAACATACCAGTTGGTGG+TGG | - | chr7_3:86614945-86614964 | Msa1133310:three_prime_UTR | 50.0% |
| ! | GAACTGGTGGTTGATGCTGA+TGG | + | chr7_3:86615035-86615054 | None:intergenic | 50.0% |
| GGTCAACATGAATCTGGGTC+GGG | + | chr7_3:86615097-86615116 | None:intergenic | 50.0% | |
| GGGTCAACATGAATCTGGGT+CGG | + | chr7_3:86615098-86615117 | None:intergenic | 50.0% | |
| GACCCAGATTCATGTTGACC+CGG | - | chr7_3:86615097-86615116 | Msa1133310:CDS | 50.0% | |
| ACCCAGATTCATGTTGACCC+GGG | - | chr7_3:86615098-86615117 | Msa1133310:CDS | 50.0% | |
| ACCCGGGTCAACATGAATCT+GGG | + | chr7_3:86615102-86615121 | None:intergenic | 50.0% | |
| CACCAAAATTCCTCTCACCC+GGG | + | chr7_3:86615118-86615137 | None:intergenic | 50.0% | |
| CCACCAAAATTCCTCTCACC+CGG | + | chr7_3:86615119-86615138 | None:intergenic | 50.0% | |
| !! | CGGGTGAGAGGAATTTTGGT+GGG | - | chr7_3:86615117-86615136 | Msa1133310:intron | 50.0% |
| !! | GGGTGAGAGGAATTTTGGTG+GGG | - | chr7_3:86615118-86615137 | Msa1133310:intron | 50.0% |
| !! | GGTGAGAGGAATTTTGGTGG+GGG | - | chr7_3:86615119-86615138 | Msa1133310:intron | 50.0% |
| TGGGTCGGGTTTGAAAATGG+TGG | - | chr7_3:86615207-86615226 | Msa1133310:intron | 50.0% | |
| CTGTGACCCGGTTGTGAATA+CGG | - | chr7_3:86615258-86615277 | Msa1133310:CDS | 50.0% | |
| CCCGGTTGTGAATACGGATT+TGG | - | chr7_3:86615264-86615283 | Msa1133310:CDS | 50.0% | |
| ACGGATTTGGGTCATAACCC+GGG | - | chr7_3:86615277-86615296 | Msa1133310:CDS | 50.0% | |
| CATAACCCGGGTGGTAGAAA+TGG | - | chr7_3:86615289-86615308 | Msa1133310:CDS | 50.0% | |
| TAACCCGGGTGGTAGAAATG+GGG | - | chr7_3:86615291-86615310 | Msa1133310:CDS | 50.0% | |
| ATTCCCCATTTCTACCACCC+GGG | + | chr7_3:86615297-86615316 | None:intergenic | 50.0% | |
| GATTCCCCATTTCTACCACC+CGG | + | chr7_3:86615298-86615317 | None:intergenic | 50.0% | |
| TGTCATGCCCTCCATTGACA+AGG | + | chr7_3:86615932-86615951 | None:intergenic | 50.0% | |
| CACCCGGGTCAACATGAATC+TGG | + | chr7_3:86615103-86615122 | None:intergenic | 55.0% | |
| TTCATGTTGACCCGGGTGAG+AGG | - | chr7_3:86615105-86615124 | Msa1133310:CDS | 55.0% | |
| ! | GACCCGGGTGAGAGGAATTT+TGG | - | chr7_3:86615113-86615132 | Msa1133310:intron | 55.0% |
| ! | CCGGGTGAGAGGAATTTTGG+TGG | - | chr7_3:86615116-86615135 | Msa1133310:intron | 55.0% |
| GATTTGGGTCATAACCCGGG+TGG | - | chr7_3:86615280-86615299 | Msa1133310:CDS | 55.0% | |
| CACCCGGGTCAACATGAATC+TGG | + | chr7_3:86615103-86615122 | None:intergenic | 55.0% | |
| TTCATGTTGACCCGGGTGAG+AGG | - | chr7_3:86615105-86615124 | Msa1133310:CDS | 55.0% | |
| ! | GACCCGGGTGAGAGGAATTT+TGG | - | chr7_3:86615113-86615132 | Msa1133310:intron | 55.0% |
| ! | CCGGGTGAGAGGAATTTTGG+TGG | - | chr7_3:86615116-86615135 | Msa1133310:intron | 55.0% |
| GATTTGGGTCATAACCCGGG+TGG | - | chr7_3:86615280-86615299 | Msa1133310:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_3 | gene | 86614792 | 86616066 | 86614792 | ID=Msa1133310;Name=Msa1133310 |
| chr7_3 | mRNA | 86614792 | 86616066 | 86614792 | ID=Msa1133310-mRNA-1;Parent=Msa1133310;Name=Msa1133310-mRNA-1;_AED=0.11;_eAED=0.11;_QI=0|0.33|0.25|1|1|0.75|4|295|211 |
| chr7_3 | exon | 86614792 | 86615130 | 86614792 | ID=Msa1133310-mRNA-1:exon:26048;Parent=Msa1133310-mRNA-1 |
| chr7_3 | exon | 86615248 | 86615331 | 86615248 | ID=Msa1133310-mRNA-1:exon:26047;Parent=Msa1133310-mRNA-1 |
| chr7_3 | exon | 86615485 | 86615664 | 86615485 | ID=Msa1133310-mRNA-1:exon:26046;Parent=Msa1133310-mRNA-1 |
| chr7_3 | exon | 86615739 | 86616066 | 86615739 | ID=Msa1133310-mRNA-1:exon:26045;Parent=Msa1133310-mRNA-1 |
| chr7_3 | CDS | 86615739 | 86616066 | 86615739 | ID=Msa1133310-mRNA-1:cds;Parent=Msa1133310-mRNA-1 |
| chr7_3 | CDS | 86615485 | 86615664 | 86615485 | ID=Msa1133310-mRNA-1:cds;Parent=Msa1133310-mRNA-1 |
| chr7_3 | CDS | 86615248 | 86615331 | 86615248 | ID=Msa1133310-mRNA-1:cds;Parent=Msa1133310-mRNA-1 |
| chr7_3 | CDS | 86615087 | 86615130 | 86615087 | ID=Msa1133310-mRNA-1:cds;Parent=Msa1133310-mRNA-1 |
| chr7_3 | three_prime_UTR | 86614792 | 86615086 | 86614792 | ID=Msa1133310-mRNA-1:three_prime_utr;Parent=Msa1133310-mRNA-1 |
| Gene Sequence |
| Protein sequence |
