AlfalfaGEDB | Msa1232510

M. sativa cultivar zhongmu-4 / Msa1232510

KEGG: -
GO: GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0008150 GO:0009889 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0042493 GO:0044212 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141
PFAM: PF02701.18

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1232510	XP_039685435.1	96.789	218	7	0	1	218	1	218	1.79e-154	437

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1232510	sp\|O82155\|DOF17_ARATH	56.643	143	55	2	5	142	18	158	4.02e-45	151

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
Msa1232510	TF	C2C2-Dof

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa1133310	Msa1232510	0.885795	5.976065e-72	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1232510	MtrunA17_Chr8g0341671	96.789	218	7	0	1	218	1	218	1.64e-158	437
Msa1232510	MtrunA17_Chr8g0374111	56.667	120	50	2	15	132	24	143	1.92e-36	127
Msa1232510	MtrunA17_Chr7g0251181	59.124	137	24	3	1	137	1	105	2.36e-36	124
Msa1232510	MtrunA17_Chr2g0328021	51.145	131	57	3	15	143	57	182	8.54e-36	127
Msa1232510	MtrunA17_Chr4g0031411	61.628	86	32	1	15	100	70	154	6.34e-32	118
Msa1232510	MtrunA17_Chr8g0374251	81.818	55	10	0	17	71	65	119	1.90e-30	114
Msa1232510	MtrunA17_Chr7g0223311	75.385	65	16	0	21	85	78	142	2.43e-30	115
Msa1232510	MtrunA17_Chr2g0308011	50.000	122	47	2	20	135	37	150	3.77e-30	110
Msa1232510	MtrunA17_Chr4g0047001	65.000	80	26	1	21	98	56	135	4.39e-30	114
Msa1232510	MtrunA17_Chr4g0030051	75.000	64	16	0	8	71	29	92	5.15e-30	112

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1232510	AT1G51700.1	56.643	143	55	2	5	142	18	158	4.09e-46	151
Msa1232510	AT3G21270.1	51.007	149	63	4	20	158	29	177	2.44e-33	119
Msa1232510	AT5G60850.1	64.368	87	27	1	16	102	47	129	9.10e-33	120
Msa1232510	AT3G50410.1	73.973	73	13	2	10	76	14	86	1.10e-32	119
Msa1232510	AT5G66940.1	70.423	71	21	0	16	86	28	98	2.45e-32	117
Msa1232510	AT5G60200.1	59.302	86	33	1	15	98	50	135	1.23e-30	114
Msa1232510	AT1G07640.1	73.438	64	17	0	15	78	16	79	2.69e-30	113
Msa1232510	AT3G45610.1	68.831	77	20	3	11	85	32	106	2.92e-30	112
Msa1232510	AT1G07640.2	73.438	64	17	0	15	78	72	135	5.29e-30	114
Msa1232510	AT5G65590.1	69.014	71	21	1	16	85	37	107	6.02e-30	113

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Find 60 sgRNAs with CRISPR-Local

Find 70 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGATATTGGACTAAAGG+TGG	0.614735	8_2:-8972294	Msa1232510:CDS
AAAATGGTGGTTCAAACTGT+TGG	0.566836	8_2:-8971870	Msa1232510:CDS
AAATGGGTCGGGTTTGAAAA+TGG	0.305819	8_2:-8972004	Msa1232510:CDS
AACTGTTGGAATGATAATCA+TGG	0.536064	8_2:-8971856	Msa1232510:CDS
ACCCAGATTCATGTTGACCC+GGG	0.637927	8_2:-8972111	Msa1232510:CDS
ACCCGGGTCAACATGAATCT+GGG	0.549644	8_2:+8972110	None:intergenic
ACGGATTTGGGTCATAACCC+GGG	0.629532	8_2:-8971931	Msa1232510:CDS
AGATGGTGTTGTTGAACGTT+TGG	0.432656	8_2:+8972209	None:intergenic
AGGAACATACCAGTTGGTGG+TGG	0.578156	8_2:-8972264	Msa1232510:CDS
AGGTCTGAATTCAAATGGGT+CGG	0.529995	8_2:-8972016	Msa1232510:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GCAAAAACTGCAAAAGATAT+TGG	-	chr8_2:8971949-8971968	Msa1232510:CDS	30.0%
TGCAAAAGATATTGGACTAA+AGG	-	chr8_2:8971957-8971976	Msa1232510:CDS	30.0%
AAAAGATATTGGACTAAAGG+TGG	-	chr8_2:8971960-8971979	Msa1232510:CDS	30.0%
TTGAATTCAGACCTTCAAAA+AGG	+	chr8_2:8972232-8972251	None:intergenic	30.0%
TTTGAAGGTCTGAATTCAAA+TGG	-	chr8_2:8972233-8972252	Msa1232510:CDS	30.0%
TTGAAGGTCTGAATTCAAAT+GGG	-	chr8_2:8972234-8972253	Msa1232510:CDS	30.0%
AACTGTTGGAATGATAATCA+TGG	-	chr8_2:8972398-8972417	Msa1232510:CDS	30.0%
AAAATGGTGGTTCAAACTGT+TGG	-	chr8_2:8972384-8972403	Msa1232510:CDS	35.0%
GTTGGAATGATAATCATGGT+TGG	-	chr8_2:8972402-8972421	Msa1232510:CDS	35.0%
TTAAGGAACATACCAGTTGG+TGG	-	chr8_2:8971987-8972006	Msa1232510:CDS	40.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8_2	gene	8971810	8972466	8971810	ID=Msa1232510;Name=Msa1232510
chr8_2	mRNA	8971810	8972466	8971810	ID=Msa1232510-mRNA-1;Parent=Msa1232510;Name=Msa1232510-mRNA-1;_AED=0.22;_eAED=0.23;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|218
chr8_2	exon	8971810	8972466	8971810	ID=Msa1232510-mRNA-1:exon:3500;Parent=Msa1232510-mRNA-1
chr8_2	CDS	8971810	8972466	8971810	ID=Msa1232510-mRNA-1:cds;Parent=Msa1232510-mRNA-1

Gene Sequence

>Msa1232510

ATGCAAAACCAAACAACATTTCAACCCATGAAACCAAATTTTCCAGAACAAGAACAACTCAAATGTCCACGTTGTGAATCAAGCAACACAAAATTCTGCTACTACAACAACTACAATCTCTCACAACCACGCCATTTTTGCAAAAACTGCAAAAGATATTGGACTAAAGGTGGTGCTTTAAGGAACATACCAGTTGGTGGTGGAACAAGAAAAGTGACAAAACGTTCATCAAATTCCAAACGTTCAACAACACCATCTTCATCTTCTCCATCAGCATCAACCACCAGTTCTTCAGCAGCAAAAGTTTCAGCTTCAGTTTCAGAAACTGACCCGACCCAGATTCATGTTGACCCGGGTGAGAGGAATTTTGGTGGGGGGAGTTTTAGTTCACTTCTTGCATCAACTGAGCGATTTGGGAACCTTTTTGAAGGTCTGAATTCAAATGGGTCGGGTTTGAAAATGGTGGAAATGGGTGAATTTGGTGAGAATTTGAACTGTGACCCGGTTGTGAATACGGATTTGGGTCATAACCCGGGTGGTAGAAATGGGGAATCAGAGATCTTTCTTGGTTTGCAAAATGGTGGTTCAAACTGTTGGAATGATAATCATGGTTGGTCTGATCTTGCTATATACACTCCTAGGTCAACTTATCAGTAG

Protein sequence

>Msa1232510

MQNQTTFQPMKPNFPEQEQLKCPRCESSNTKFCYYNNYNLSQPRHFCKNCKRYWTKGGALRNIPVGGGTRKVTKRSSNSKRSTTPSSSSPSASTTSSSAAKVSASVSETDPTQIHVDPGERNFGGGSFSSLLASTERFGNLFEGLNSNGSGLKMVEMGEFGENLNCDPVVNTDLGHNPGGRNGESEIFLGLQNGGSNCWNDNHGWSDLAIYTPRSTYQ*