Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1133370 | XP_003608592.1 | 65.506 | 316 | 40 | 7 | 1 | 254 | 14 | 322 | 3.54e-127 | 374 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1133370 | sp|Q9T072|BH025_ARATH | 34.466 | 206 | 82 | 8 | 90 | 243 | 87 | 291 | 6.81e-17 | 82.0 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1133370 | G7JGD6 | 65.506 | 316 | 40 | 7 | 1 | 254 | 14 | 322 | 1.69e-127 | 374 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1133370 | Msa1297350 | 0.931792 | 2.234692e-94 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1133370 | MtrunA17_Chr4g0054561 | 65.506 | 316 | 40 | 7 | 1 | 254 | 14 | 322 | 3.25e-131 | 374 |
| Msa1133370 | MtrunA17_Chr4g0054551 | 64.557 | 316 | 43 | 7 | 1 | 254 | 14 | 322 | 1.09e-129 | 370 |
| Msa1133370 | MtrunA17_Chr5g0400671 | 32.164 | 342 | 108 | 13 | 3 | 255 | 15 | 321 | 1.31e-32 | 121 |
| Msa1133370 | MtrunA17_Chr4g0049331 | 38.571 | 140 | 57 | 5 | 141 | 252 | 164 | 302 | 3.31e-18 | 82.4 |
| Msa1133370 | MtrunA17_Chr5g0400661 | 39.316 | 117 | 50 | 2 | 141 | 237 | 178 | 293 | 2.65e-17 | 80.1 |
| Msa1133370 | MtrunA17_Chr2g0280161 | 36.170 | 141 | 60 | 4 | 141 | 252 | 206 | 345 | 8.16e-16 | 75.9 |
| Msa1133370 | MtrunA17_Chr5g0400641 | 35.537 | 121 | 68 | 3 | 141 | 253 | 27 | 145 | 2.33e-15 | 71.6 |
| Msa1133370 | MtrunA17_Chr4g0054571 | 43.860 | 114 | 43 | 5 | 141 | 237 | 179 | 288 | 6.72e-15 | 73.2 |
| Msa1133370 | MtrunA17_Chr5g0400621 | 38.525 | 122 | 63 | 3 | 141 | 253 | 186 | 304 | 1.69e-14 | 72.0 |
| Msa1133370 | MtrunA17_Chr4g0054581 | 34.932 | 146 | 58 | 6 | 141 | 252 | 227 | 369 | 2.54e-14 | 71.6 |
| Msa1133370 | MtrunA17_Chr6g0468491 | 31.250 | 192 | 104 | 8 | 85 | 253 | 98 | 284 | 7.99e-14 | 70.1 |
| Msa1133370 | MtrunA17_Chr4g0054621 | 32.576 | 132 | 67 | 2 | 142 | 252 | 202 | 332 | 1.45e-13 | 69.3 |
| Msa1133370 | MtrunA17_Chr7g0225901 | 40.196 | 102 | 53 | 4 | 141 | 235 | 117 | 217 | 1.86e-13 | 68.2 |
| Msa1133370 | MtrunA17_Chr2g0307141 | 35.714 | 140 | 61 | 4 | 141 | 252 | 212 | 350 | 2.41e-13 | 68.9 |
| Msa1133370 | MtrunA17_Chr2g0307131 | 35.714 | 140 | 61 | 4 | 141 | 252 | 208 | 346 | 3.23e-13 | 68.6 |
| Msa1133370 | MtrunA17_Chr4g0002781 | 33.333 | 153 | 66 | 4 | 135 | 254 | 197 | 346 | 1.62e-12 | 66.2 |
| Msa1133370 | MtrunA17_Chr4g0033391 | 33.577 | 137 | 65 | 4 | 141 | 252 | 176 | 311 | 5.42e-12 | 64.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1133370 | AT4G37850.2 | 34.466 | 206 | 82 | 8 | 90 | 243 | 87 | 291 | 6.93e-18 | 82.0 |
| Msa1133370 | AT4G37850.1 | 34.466 | 206 | 82 | 8 | 90 | 243 | 87 | 291 | 6.93e-18 | 82.0 |
| Msa1133370 | AT2G22770.1 | 45.161 | 124 | 45 | 5 | 142 | 243 | 162 | 284 | 4.37e-16 | 76.6 |
| Msa1133370 | AT2G22760.2 | 40.517 | 116 | 58 | 4 | 142 | 247 | 149 | 263 | 5.95e-16 | 75.9 |
| Msa1133370 | AT2G22760.1 | 37.063 | 143 | 57 | 6 | 142 | 252 | 149 | 290 | 8.17e-16 | 75.9 |
| Msa1133370 | AT2G22750.1 | 42.149 | 121 | 57 | 3 | 135 | 243 | 149 | 268 | 1.98e-12 | 66.2 |
| Msa1133370 | AT2G22750.3 | 43.478 | 115 | 52 | 3 | 141 | 243 | 183 | 296 | 2.07e-12 | 66.2 |
| Msa1133370 | AT2G22750.5 | 43.478 | 115 | 52 | 3 | 141 | 243 | 179 | 292 | 2.09e-12 | 66.2 |
| Msa1133370 | AT2G22750.2 | 42.149 | 121 | 57 | 3 | 135 | 243 | 149 | 268 | 2.13e-12 | 66.2 |
| Msa1133370 | AT2G22750.4 | 43.478 | 115 | 52 | 3 | 141 | 243 | 183 | 296 | 2.23e-12 | 66.2 |
Find 40 sgRNAs with CRISPR-Local
Find 140 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAAATTGAAGCAAGGGTTTC+TGG | 0.125232 | 7_3:+86731555 | Msa1133370:CDS |
| TTTGAATTAACAGGGATTAA+TGG | 0.241351 | 7_3:+86730523 | None:intergenic |
| TGCATTCGAGTTTGATGATA+TGG | 0.245986 | 7_3:+86730592 | Msa1133370:CDS |
| GATGGACAAGGCAACTGTTT+TGG | 0.280749 | 7_3:+86731368 | Msa1133370:intron |
| AGAATTGTTCTGTGTGCTTT+CGG | 0.323320 | 7_3:-86730696 | None:intergenic |
| AGAATATTGCTTGACAATAA+AGG | 0.327738 | 7_3:+86732113 | Msa1133370:CDS |
| TTCACCCTTGTATCCATGTT+GGG | 0.338276 | 7_3:-86730830 | None:intergenic |
| ACATGATCTTGAGCCTGAAT+AGG | 0.366395 | 7_3:-86730961 | None:intergenic |
| CATGATCTTGAGCCTGAATA+GGG | 0.371001 | 7_3:-86730960 | None:intergenic |
| CTTCACCCTTGTATCCATGT+TGG | 0.403393 | 7_3:-86730831 | None:intergenic |
| AAGAAGCCTAAAACCGAGAT+TGG | 0.405458 | 7_3:+86730851 | Msa1133370:CDS |
| AATAAATAGAAACCCTATTC+AGG | 0.429952 | 7_3:+86730948 | Msa1133370:CDS |
| TTGATCAGGACTACTTTCAA+TGG | 0.442294 | 7_3:-86730723 | None:intergenic |
| TGATCAGGACTACTTTCAAT+GGG | 0.443342 | 7_3:-86730722 | None:intergenic |
| AAGAATAAGTACTCTCTTGT+GGG | 0.460152 | 7_3:-86730640 | None:intergenic |
| TTCTAATTCGTTGAGTATTG+CGG | 0.481274 | 7_3:-86731631 | None:intergenic |
| CGAATGCATATGAGTCCATT+GGG | 0.496199 | 7_3:-86730577 | None:intergenic |
| TCGAATGCATATGAGTCCAT+TGG | 0.498731 | 7_3:-86730578 | None:intergenic |
| GGGTTCAAAAGAAATGATCT+TGG | 0.501611 | 7_3:-86730810 | None:intergenic |
| GGTGAAGCAACAGATTGATC+AGG | 0.522332 | 7_3:-86730737 | None:intergenic |
| TCTCGTAAGGAGCATAAGTC+AGG | 0.525482 | 7_3:+86732137 | Msa1133370:CDS |
| GAAGAATAAGTACTCTCTTG+TGG | 0.530988 | 7_3:-86730641 | None:intergenic |
| TGTTCTGTGTGCTTTCGGAA+TGG | 0.533620 | 7_3:-86730691 | None:intergenic |
| TTGAACCCAACATGGATACA+AGG | 0.536627 | 7_3:+86730825 | Msa1133370:CDS |
| TGAGTATTGCGGTCGCAGAT+CGG | 0.551040 | 7_3:-86731620 | None:intergenic |
| AGAAGCCTAAAACCGAGATT+GGG | 0.552154 | 7_3:+86730852 | Msa1133370:CDS |
| ATCCATTGCGACAGATATTG+TGG | 0.561083 | 7_3:+86731597 | Msa1133370:CDS |
| AAAACATATGAAGCAACTAC+AGG | 0.565504 | 7_3:+86731401 | Msa1133370:CDS |
| GGCCACAATATCTGTCGCAA+TGG | 0.577566 | 7_3:-86731599 | None:intergenic |
| TGACAATAAAGGATCTCGTA+AGG | 0.599743 | 7_3:+86732124 | Msa1133370:CDS |
| GAATTAACAGGGATTAATGG+AGG | 0.608513 | 7_3:+86730526 | None:intergenic |
| TTATTATAAACGAGAGAACA+AGG | 0.617033 | 7_3:+86730918 | Msa1133370:CDS |
| GGAAAGAGTGAAGACATTGG+AGG | 0.623302 | 7_3:+86731422 | Msa1133370:CDS |
| ACTTTGCCTGCAGATGGACA+AGG | 0.625234 | 7_3:+86731356 | Msa1133370:intron |
| AGAATAAGTACTCTCTTGTG+GGG | 0.633544 | 7_3:-86730639 | None:intergenic |
| TAATGATCATGAATACCCAA+TGG | 0.643981 | 7_3:+86730562 | Msa1133370:CDS |
| TGAACCCAACATGGATACAA+GGG | 0.649172 | 7_3:+86730826 | Msa1133370:CDS |
| ACAGGAAAGAGTGAAGACAT+TGG | 0.652927 | 7_3:+86731419 | Msa1133370:CDS |
| TTTGGAAGTGTGATATCTCA+AGG | 0.676020 | 7_3:+86730892 | Msa1133370:intron |
| GATCAGGACTACTTTCAATG+GGG | 0.707589 | 7_3:-86730721 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAGTTTTAAAAATTTTAAGT+TGG | - | chr7_3:86731857-86731876 | None:intergenic | 10.0% |
| !!! | AAGAATTTTTATATATAGAA+TGG | - | chr7_3:86732592-86732611 | None:intergenic | 10.0% |
| !!! | ATTTTAATTAGGTTTTAAGT+TGG | - | chr7_3:86731885-86731904 | None:intergenic | 15.0% |
| !!! | CAGATTTTATTTAATTTTCA+TGG | + | chr7_3:86732060-86732079 | Msa1133370:intron | 15.0% |
| !! | TTACTATATTAAATTGCAAT+AGG | - | chr7_3:86732915-86732934 | None:intergenic | 15.0% |
| !!! | GTTTATTTTAAGTTTCTAGT+TGG | + | chr7_3:86731798-86731817 | Msa1133370:intron | 20.0% |
| !!! | CTCTTATGATCATTTTAATT+AGG | - | chr7_3:86731896-86731915 | None:intergenic | 20.0% |
| !! | TCATGTTGATATATTCTATT+TGG | + | chr7_3:86731966-86731985 | Msa1133370:intron | 20.0% |
| !! | TAAAAAGCCATAATAAACTA+AGG | - | chr7_3:86732266-86732285 | None:intergenic | 20.0% |
| !!! | CAAATGATGGAAAAAAAAAA+AGG | - | chr7_3:86732316-86732335 | None:intergenic | 20.0% |
| !!! | CTTTTTTTTTTTCCATCATT+TGG | + | chr7_3:86732314-86732333 | Msa1133370:intron | 20.0% |
| !!! | ACAATAAATCCATTTTGTAT+TGG | + | chr7_3:86732834-86732853 | Msa1133370:intron | 20.0% |
| ! | TTATTATAAACGAGAGAACA+AGG | + | chr7_3:86730918-86730937 | Msa1133370:CDS | 25.0% |
| ! | AATAAATAGAAACCCTATTC+AGG | + | chr7_3:86730948-86730967 | Msa1133370:CDS | 25.0% |
| !! | TCAAGATAGTTATTTCCAAA+TGG | - | chr7_3:86731693-86731712 | None:intergenic | 25.0% |
| !! | AAATTTTACCTGAGTAACAA+TGG | - | chr7_3:86731721-86731740 | None:intergenic | 25.0% |
| !! | TTTCAAAGTGAGTAATGTTT+TGG | + | chr7_3:86731830-86731849 | Msa1133370:intron | 25.0% |
| !! | TAAGCCTCTATATTTTATCT+CGG | + | chr7_3:86732025-86732044 | Msa1133370:intron | 25.0% |
| !! | TTTTCCGAGATAAAATATAG+AGG | - | chr7_3:86732032-86732051 | None:intergenic | 25.0% |
| ! | AGAATATTGCTTGACAATAA+AGG | + | chr7_3:86732113-86732132 | Msa1133370:CDS | 25.0% |
| !!! | CAAATTTTGATGACTTGAAA+TGG | - | chr7_3:86732194-86732213 | None:intergenic | 25.0% |
| ! | GTAATGACCTTAGTTTATTA+TGG | + | chr7_3:86732256-86732275 | Msa1133370:intron | 25.0% |
| !! | TTTTCCTTAATTTTGCACAA+TGG | + | chr7_3:86732391-86732410 | Msa1133370:intron | 25.0% |
| ! | ATGTTCTACCAAATATAGTA+TGG | + | chr7_3:86732648-86732667 | Msa1133370:intron | 25.0% |
| ! | TGTTCTACCAAATATAGTAT+GGG | + | chr7_3:86732649-86732668 | Msa1133370:intron | 25.0% |
| ! | ATAATAATCTCATGATCCAA+TGG | - | chr7_3:86732889-86732908 | None:intergenic | 25.0% |
| TAATGATCATGAATACCCAA+TGG | + | chr7_3:86730562-86730581 | Msa1133370:CDS | 30.0% | |
| AAGAATAAGTACTCTCTTGT+GGG | - | chr7_3:86730643-86730662 | None:intergenic | 30.0% | |
| GTATGGAGAAAACTTGAATT+TGG | + | chr7_3:86730874-86730893 | Msa1133370:intron | 30.0% | |
| AATCTCACACAATTTGATTG+TGG | + | chr7_3:86731140-86731159 | Msa1133370:intron | 30.0% | |
| ATATTGCATGTTATATGCAG+GGG | - | chr7_3:86731196-86731215 | None:intergenic | 30.0% | |
| CATATTGCATGTTATATGCA+GGG | - | chr7_3:86731197-86731216 | None:intergenic | 30.0% | |
| AGTTAGTATAGTTGCAATTG+AGG | + | chr7_3:86731291-86731310 | Msa1133370:intron | 30.0% | |
| AAAACATATGAAGCAACTAC+AGG | + | chr7_3:86731401-86731420 | Msa1133370:CDS | 30.0% | |
| !!! | TGCTGATTCGACTTTTTTAT+CGG | - | chr7_3:86731457-86731476 | None:intergenic | 30.0% |
| ! | AAACCCTTGCTTCAATTTTT+GGG | - | chr7_3:86731554-86731573 | None:intergenic | 30.0% |
| ! | TTCTAATTCGTTGAGTATTG+CGG | - | chr7_3:86731634-86731653 | None:intergenic | 30.0% |
| TGATATAACCATTGTTACTC+AGG | + | chr7_3:86731710-86731729 | Msa1133370:intron | 30.0% | |
| ACTTGTCTTAATTGCATGTT+TGG | + | chr7_3:86731763-86731782 | Msa1133370:intron | 30.0% | |
| !! | TTACTCACTTTGAAACAAGT+TGG | - | chr7_3:86731825-86731844 | None:intergenic | 30.0% |
| AACTAGGCTAGAACATAAAA+TGG | - | chr7_3:86731920-86731939 | None:intergenic | 30.0% | |
| CATGAACAAAGAATTCTACT+CGG | - | chr7_3:86731951-86731970 | None:intergenic | 30.0% | |
| CAAAATTAAGGAAAACACGT+TGG | - | chr7_3:86732386-86732405 | None:intergenic | 30.0% | |
| AATGCCATTGTGCAAAATTA+AGG | - | chr7_3:86732398-86732417 | None:intergenic | 30.0% | |
| !!! | CAATGGCATTTTTTAGAACT+AGG | + | chr7_3:86732408-86732427 | Msa1133370:intron | 30.0% |
| ! | TTTCTTTTTCTTCACACAAG+AGG | + | chr7_3:86732440-86732459 | Msa1133370:intron | 30.0% |
| ! | TTCTTTTTCTTCACACAAGA+GGG | + | chr7_3:86732441-86732460 | Msa1133370:intron | 30.0% |
| !!! | TTGTTTCTTTTGTCGTTTTG+TGG | + | chr7_3:86732561-86732580 | Msa1133370:intron | 30.0% |
| TCAACTACTCCAATACAAAA+TGG | - | chr7_3:86732846-86732865 | None:intergenic | 30.0% | |
| ! | AATTGGTGATTAATTGCCAT+TGG | + | chr7_3:86732870-86732889 | Msa1133370:intron | 30.0% |
| ! | TGCATTCGAGTTTGATGATA+TGG | + | chr7_3:86730592-86730611 | Msa1133370:CDS | 35.0% |
| AGAATAAGTACTCTCTTGTG+GGG | - | chr7_3:86730642-86730661 | None:intergenic | 35.0% | |
| GAAGAATAAGTACTCTCTTG+TGG | - | chr7_3:86730644-86730663 | None:intergenic | 35.0% | |
| AGAATTGTTCTGTGTGCTTT+CGG | - | chr7_3:86730699-86730718 | None:intergenic | 35.0% | |
| TGATCAGGACTACTTTCAAT+GGG | - | chr7_3:86730725-86730744 | None:intergenic | 35.0% | |
| TTGATCAGGACTACTTTCAA+TGG | - | chr7_3:86730726-86730745 | None:intergenic | 35.0% | |
| !!! | AGTCTTAGTTTTGTTGGTGT+AGG | - | chr7_3:86730761-86730780 | None:intergenic | 35.0% |
| !!! | GACTTGAGTCTTAGTTTTGT+TGG | - | chr7_3:86730767-86730786 | None:intergenic | 35.0% |
| GGGTTCAAAAGAAATGATCT+TGG | - | chr7_3:86730813-86730832 | None:intergenic | 35.0% | |
| ! | CATTTCTTTTGAACCCAACA+TGG | + | chr7_3:86730817-86730836 | Msa1133370:CDS | 35.0% |
| ! | TTTGGAAGTGTGATATCTCA+AGG | + | chr7_3:86730892-86730911 | Msa1133370:intron | 35.0% |
| TTATTGCCGAAAGAAAACGA+AGG | + | chr7_3:86730983-86731002 | Msa1133370:intron | 35.0% | |
| TATTGCCGAAAGAAAACGAA+GGG | + | chr7_3:86730984-86731003 | Msa1133370:intron | 35.0% | |
| ! | CTTTTCCCTTCGTTTTCTTT+CGG | - | chr7_3:86730992-86731011 | None:intergenic | 35.0% |
| ATGAAAGAGCAATGAATCTC+TGG | - | chr7_3:86731020-86731039 | None:intergenic | 35.0% | |
| !!! | TATAGTACCTTTTTGAGTCC+AGG | - | chr7_3:86731051-86731070 | None:intergenic | 35.0% |
| !!! | TTTTTTGTCAAGTAGCCTAG+TGG | + | chr7_3:86731114-86731133 | Msa1133370:intron | 35.0% |
| ACAATTTGATTGTGGAGAAG+TGG | + | chr7_3:86731148-86731167 | Msa1133370:intron | 35.0% | |
| GCATATTGCATGTTATATGC+AGG | - | chr7_3:86731198-86731217 | None:intergenic | 35.0% | |
| !! | CTTCAATTTTTGGGAGTGAT+TGG | - | chr7_3:86731545-86731564 | None:intergenic | 35.0% |
| ACTCCCAAAAATTGAAGCAA+GGG | + | chr7_3:86731548-86731567 | Msa1133370:CDS | 35.0% | |
| ! | GAAACCCTTGCTTCAATTTT+TGG | - | chr7_3:86731555-86731574 | None:intergenic | 35.0% |
| AAAATTGAAGCAAGGGTTTC+TGG | + | chr7_3:86731555-86731574 | Msa1133370:CDS | 35.0% | |
| ! | AGCACTTCTATTTTGCCATT+TGG | + | chr7_3:86731675-86731694 | Msa1133370:intron | 35.0% |
| TGACAATAAAGGATCTCGTA+AGG | + | chr7_3:86732124-86732143 | Msa1133370:CDS | 35.0% | |
| TTCCATCATTTGGATTACTG+AGG | + | chr7_3:86732324-86732343 | Msa1133370:intron | 35.0% | |
| TACCTCAGTAATCCAAATGA+TGG | - | chr7_3:86732329-86732348 | None:intergenic | 35.0% | |
| !!! | CACAAGAGGGATTTTTTTAG+AGG | + | chr7_3:86732454-86732473 | Msa1133370:intron | 35.0% |
| !!! | TTTCTTTTGTCGTTTTGTGG+TGG | + | chr7_3:86732564-86732583 | Msa1133370:intron | 35.0% |
| CGAGTATCCCATACTATATT+TGG | - | chr7_3:86732659-86732678 | None:intergenic | 35.0% | |
| TTGGAGTAGTTGACTAGAAT+TGG | + | chr7_3:86732853-86732872 | Msa1133370:intron | 35.0% | |
| AGAGTTAGGATTAGGATTAG+GGG | - | chr7_3:86732940-86732959 | None:intergenic | 35.0% | |
| CAGAGTTAGGATTAGGATTA+GGG | - | chr7_3:86732941-86732960 | None:intergenic | 35.0% | |
| CAATATCCAGAGTTAGGATT+AGG | - | chr7_3:86732948-86732967 | None:intergenic | 35.0% | |
| CAATGACAATATCCAGAGTT+AGG | - | chr7_3:86732954-86732973 | None:intergenic | 35.0% | |
| CTAACTCTGGATATTGTCAT+TGG | + | chr7_3:86732952-86732971 | Msa1133370:intron | 35.0% | |
| CGAATGCATATGAGTCCATT+GGG | - | chr7_3:86730580-86730599 | None:intergenic | 40.0% | |
| TCGAATGCATATGAGTCCAT+TGG | - | chr7_3:86730581-86730600 | None:intergenic | 40.0% | |
| GATCAGGACTACTTTCAATG+GGG | - | chr7_3:86730724-86730743 | None:intergenic | 40.0% | |
| TTGAACCCAACATGGATACA+AGG | + | chr7_3:86730825-86730844 | Msa1133370:CDS | 40.0% | |
| TGAACCCAACATGGATACAA+GGG | + | chr7_3:86730826-86730845 | Msa1133370:CDS | 40.0% | |
| TTCACCCTTGTATCCATGTT+GGG | - | chr7_3:86730833-86730852 | None:intergenic | 40.0% | |
| AAGAAGCCTAAAACCGAGAT+TGG | + | chr7_3:86730851-86730870 | Msa1133370:CDS | 40.0% | |
| AGAAGCCTAAAACCGAGATT+GGG | + | chr7_3:86730852-86730871 | Msa1133370:CDS | 40.0% | |
| ! | GTTTTCTCCATACCCAATCT+CGG | - | chr7_3:86730867-86730886 | None:intergenic | 40.0% |
| CATGATCTTGAGCCTGAATA+GGG | - | chr7_3:86730963-86730982 | None:intergenic | 40.0% | |
| ACATGATCTTGAGCCTGAAT+AGG | - | chr7_3:86730964-86730983 | None:intergenic | 40.0% | |
| TCTTCTTCCTGGACTCAAAA+AGG | + | chr7_3:86731041-86731060 | Msa1133370:intron | 40.0% | |
| TTGTGTGAGATTTAGCCACT+AGG | - | chr7_3:86731132-86731151 | None:intergenic | 40.0% | |
| ATGTTTACTTTGCCTGCAGA+TGG | + | chr7_3:86731350-86731369 | Msa1133370:intron | 40.0% | |
| ACAGGAAAGAGTGAAGACAT+TGG | + | chr7_3:86731419-86731438 | Msa1133370:CDS | 40.0% | |
| ! | GTCTGAATTTTTGTCGCAAG+AGG | - | chr7_3:86731523-86731542 | None:intergenic | 40.0% |
| CACTCCCAAAAATTGAAGCA+AGG | + | chr7_3:86731547-86731566 | Msa1133370:CDS | 40.0% | |
| ATCCATTGCGACAGATATTG+TGG | + | chr7_3:86731597-86731616 | Msa1133370:CDS | 40.0% | |
| AATCTCCACAACGTGAAAGA+GGG | - | chr7_3:86732509-86732528 | None:intergenic | 40.0% | |
| TATAGTATGGGATACTCGTG+TGG | + | chr7_3:86732661-86732680 | Msa1133370:intron | 40.0% | |
| GAGTTAGGATTAGGATTAGG+GGG | - | chr7_3:86732939-86732958 | None:intergenic | 40.0% | |
| CCAGAGTTAGGATTAGGATT+AGG | - | chr7_3:86732942-86732961 | None:intergenic | 40.0% | |
| CCTAATCCTAATCCTAACTC+TGG | + | chr7_3:86732939-86732958 | Msa1133370:intron | 40.0% | |
| TGTTCTGTGTGCTTTCGGAA+TGG | - | chr7_3:86730694-86730713 | None:intergenic | 45.0% | |
| GGTGAAGCAACAGATTGATC+AGG | - | chr7_3:86730740-86730759 | None:intergenic | 45.0% | |
| CTTCACCCTTGTATCCATGT+TGG | - | chr7_3:86730834-86730853 | None:intergenic | 45.0% | |
| ! | CCATACCCAATCTCGGTTTT+AGG | - | chr7_3:86730860-86730879 | None:intergenic | 45.0% |
| CCTAAAACCGAGATTGGGTA+TGG | + | chr7_3:86730857-86730876 | Msa1133370:intron | 45.0% | |
| GCTCTTTCATCTCTTCTTCC+TGG | + | chr7_3:86731030-86731049 | Msa1133370:intron | 45.0% | |
| ! | TTGTGGAGAAGTGGAGTGTT+AGG | + | chr7_3:86731157-86731176 | Msa1133370:intron | 45.0% |
| ! | TGTGGAGAAGTGGAGTGTTA+GGG | + | chr7_3:86731158-86731177 | Msa1133370:intron | 45.0% |
| TTGCATGTTATATGCAGGGG+CGG | - | chr7_3:86731193-86731212 | None:intergenic | 45.0% | |
| GTTTATATCCCCGTGAGCTT+AGG | - | chr7_3:86731232-86731251 | None:intergenic | 45.0% | |
| ! | GATGGACAAGGCAACTGTTT+TGG | + | chr7_3:86731368-86731387 | Msa1133370:intron | 45.0% |
| GGAAAGAGTGAAGACATTGG+AGG | + | chr7_3:86731422-86731441 | Msa1133370:CDS | 45.0% | |
| !! | TAGAAGTGCTCTGAACAGTG+AGG | - | chr7_3:86731665-86731684 | None:intergenic | 45.0% |
| CTACTCGGCACAAGAAAACT+AGG | - | chr7_3:86731936-86731955 | None:intergenic | 45.0% | |
| ! | TCTCGTAAGGAGCATAAGTC+AGG | + | chr7_3:86732137-86732156 | Msa1133370:CDS | 45.0% |
| ! | GGAGCATAAGTCAGGTTTTG+AGG | + | chr7_3:86732145-86732164 | Msa1133370:intron | 45.0% |
| TTCATCCCTCTTTCACGTTG+TGG | + | chr7_3:86732501-86732520 | Msa1133370:intron | 45.0% | |
| CAATCTCCACAACGTGAAAG+AGG | - | chr7_3:86732510-86732529 | None:intergenic | 45.0% | |
| ! | GTGGAGAAGTGGAGTGTTAG+GGG | + | chr7_3:86731159-86731178 | Msa1133370:intron | 50.0% |
| TGCATGTTATATGCAGGGGC+GGG | - | chr7_3:86731192-86731211 | None:intergenic | 50.0% | |
| TCCCAACTGACCTAAGCTCA+CGG | + | chr7_3:86731219-86731238 | Msa1133370:intron | 50.0% | |
| ACTTTGCCTGCAGATGGACA+AGG | + | chr7_3:86731356-86731375 | Msa1133370:intron | 50.0% | |
| GGCCACAATATCTGTCGCAA+TGG | - | chr7_3:86731602-86731621 | None:intergenic | 50.0% | |
| ! | TGAGTATTGCGGTCGCAGAT+CGG | - | chr7_3:86731623-86731642 | None:intergenic | 50.0% |
| GCATGTTATATGCAGGGGCG+GGG | - | chr7_3:86731191-86731210 | None:intergenic | 55.0% | |
| GTGAGCTTAGGTCAGTTGGG+AGG | - | chr7_3:86731220-86731239 | None:intergenic | 55.0% | |
| CCCGTGAGCTTAGGTCAGTT+GGG | - | chr7_3:86731223-86731242 | None:intergenic | 55.0% | |
| CCCAACTGACCTAAGCTCAC+GGG | + | chr7_3:86731220-86731239 | Msa1133370:intron | 55.0% | |
| CCAACTGACCTAAGCTCACG+GGG | + | chr7_3:86731221-86731240 | Msa1133370:intron | 55.0% | |
| CAGTTGCCTTGTCCATCTGC+AGG | - | chr7_3:86731365-86731384 | None:intergenic | 55.0% | |
| CCCCGTGAGCTTAGGTCAGT+TGG | - | chr7_3:86731224-86731243 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_3 | gene | 86730536 | 86733036 | 86730536 | ID=Msa1133370;Name=Msa1133370 |
| chr7_3 | mRNA | 86730536 | 86733036 | 86730536 | ID=Msa1133370-mRNA-1;Parent=Msa1133370;Name=Msa1133370-mRNA-1;_AED=0.14;_eAED=0.16;_QI=0|0|0|0.83|0.2|0.33|6|0|256 |
| chr7_3 | exon | 86730536 | 86730873 | 86730536 | ID=Msa1133370-mRNA-1:exon:26065;Parent=Msa1133370-mRNA-1 |
| chr7_3 | exon | 86730900 | 86730981 | 86730900 | ID=Msa1133370-mRNA-1:exon:26066;Parent=Msa1133370-mRNA-1 |
| chr7_3 | exon | 86731369 | 86731476 | 86731369 | ID=Msa1133370-mRNA-1:exon:26067;Parent=Msa1133370-mRNA-1 |
| chr7_3 | exon | 86731489 | 86731668 | 86731489 | ID=Msa1133370-mRNA-1:exon:26068;Parent=Msa1133370-mRNA-1 |
| chr7_3 | exon | 86732105 | 86732158 | 86732105 | ID=Msa1133370-mRNA-1:exon:26069;Parent=Msa1133370-mRNA-1 |
| chr7_3 | exon | 86733031 | 86733036 | 86733031 | ID=Msa1133370-mRNA-1:exon:26070;Parent=Msa1133370-mRNA-1 |
| chr7_3 | CDS | 86730536 | 86730873 | 86730536 | ID=Msa1133370-mRNA-1:cds;Parent=Msa1133370-mRNA-1 |
| chr7_3 | CDS | 86730900 | 86730981 | 86730900 | ID=Msa1133370-mRNA-1:cds;Parent=Msa1133370-mRNA-1 |
| chr7_3 | CDS | 86731369 | 86731476 | 86731369 | ID=Msa1133370-mRNA-1:cds;Parent=Msa1133370-mRNA-1 |
| chr7_3 | CDS | 86731489 | 86731668 | 86731489 | ID=Msa1133370-mRNA-1:cds;Parent=Msa1133370-mRNA-1 |
| chr7_3 | CDS | 86732105 | 86732158 | 86732105 | ID=Msa1133370-mRNA-1:cds;Parent=Msa1133370-mRNA-1 |
| chr7_3 | CDS | 86733031 | 86733036 | 86733031 | ID=Msa1133370-mRNA-1:cds;Parent=Msa1133370-mRNA-1 |
| Gene Sequence |
| Protein sequence |
