Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1133490 | XP_024628370.1 | 98.256 | 172 | 2 | 1 | 1 | 172 | 1 | 171 | 3.27e-116 | 336 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1133490 | sp|Q8QZZ7|TPRKB_MOUSE | 32.927 | 164 | 104 | 3 | 12 | 172 | 15 | 175 | 3.73e-21 | 88.2 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1133490 | I3S9S0 | 98.256 | 172 | 2 | 1 | 1 | 172 | 1 | 171 | 1.56e-116 | 336 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0707080 | Msa1133490 | 0.978753 | 1.725834e-146 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1133490 | MtrunA17_Chr8g0388681 | 98.256 | 172 | 2 | 1 | 1 | 172 | 1 | 171 | 3.01e-120 | 336 |
| Msa1133490 | MtrunA17_Chr2g0333941 | 80.153 | 131 | 23 | 1 | 30 | 160 | 1 | 128 | 4.50e-68 | 203 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1133490 | AT4G34412.1 | 72.674 | 172 | 47 | 0 | 1 | 172 | 1 | 172 | 1.77e-86 | 251 |
Find 65 sgRNAs with CRISPR-Local
Find 177 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGCTATGAGTAGCATAATTT+CGG | 0.239297 | 7_3:+87039290 | None:intergenic |
| TCATCATAACTAATGTTTAA+TGG | 0.269373 | 7_3:+87039500 | None:intergenic |
| TGTTTCTTGCAGGGAACTAT+TGG | 0.280671 | 7_3:-87040461 | Msa1133490:intron |
| GGACTCTAACTTATAAGATT+TGG | 0.292724 | 7_3:-87039253 | Msa1133490:three_prime_UTR |
| ATCAAGTAAATGAATGATTA+AGG | 0.310549 | 7_3:+87039226 | None:intergenic |
| CATAGCGGGAAGTTATATTA+TGG | 0.326765 | 7_3:-87039274 | Msa1133490:three_prime_UTR |
| TAAATACATAATTACATGTT+TGG | 0.329858 | 7_3:+87040077 | None:intergenic |
| CGTCATTTACTTGTGTCAAT+AGG | 0.344791 | 7_3:-87039342 | Msa1133490:three_prime_UTR |
| GCTAGAACAGGGAAAATATC+TGG | 0.361800 | 7_3:+87040189 | None:intergenic |
| TCCAATGACGAGTTTCTCTA+TGG | 0.365136 | 7_3:+87039817 | None:intergenic |
| TTAGTTATGATGAGATATTA+TGG | 0.373161 | 7_3:-87039490 | Msa1133490:three_prime_UTR |
| GAGAAAGACTAACTTTGAAT+TGG | 0.376103 | 7_3:+87041889 | None:intergenic |
| AAGATATCTGCCTTGGAACT+TGG | 0.384569 | 7_3:-87039657 | Msa1133490:CDS |
| GCGTTGAGGAATGCAACTTC+TGG | 0.407224 | 7_3:+87040412 | None:intergenic |
| AAGCATGCAAGCTGGGACAT+TGG | 0.416752 | 7_3:-87040437 | Msa1133490:CDS |
| GCTATGAGTAGCATAATTTC+GGG | 0.420230 | 7_3:+87039291 | None:intergenic |
| CTCTCCCTTTCAGCTCCTCT+AGG | 0.421727 | 7_3:+87039783 | None:intergenic |
| TTGTGTGCAGCTGCTAGAAC+AGG | 0.422005 | 7_3:+87040177 | None:intergenic |
| GCTCCTAGCCTTATCGTGTA+AGG | 0.430881 | 7_3:-87039546 | Msa1133490:three_prime_UTR |
| GCCATAGAGAAACTCGTCAT+TGG | 0.436847 | 7_3:-87039818 | Msa1133490:CDS |
| TAGAATCTTCTCACCTCATC+AGG | 0.444275 | 7_3:+87039914 | None:intergenic |
| TAAATCATCCTTACACGATA+AGG | 0.446094 | 7_3:+87039538 | None:intergenic |
| AAGCATCACGAGCAGCTATT+CGG | 0.464580 | 7_3:+87039604 | None:intergenic |
| AAATCGAGCAGCAAGGATAT+AGG | 0.479316 | 7_3:+87039946 | None:intergenic |
| GCATTACAAGATATCTGCCT+TGG | 0.484266 | 7_3:-87039664 | Msa1133490:CDS |
| AAATTATAGTAGTTGAGAGT+TGG | 0.485512 | 7_3:-87039180 | Msa1133490:three_prime_UTR |
| TAGTAGTTGAGAGTTGGTAA+TGG | 0.488735 | 7_3:-87039174 | Msa1133490:three_prime_UTR |
| TAACGGTTGTTAACTGCCGC+TGG | 0.499306 | 7_3:-87039373 | Msa1133490:three_prime_UTR |
| AAGCTCATCGACGACATCAA+TGG | 0.499776 | 7_3:-87041947 | Msa1133490:CDS |
| TTGACCTAGAGGAGCTGAAA+GGG | 0.500088 | 7_3:-87039787 | Msa1133490:CDS |
| GATGTCGTCGATGAGCTTCA+TGG | 0.510473 | 7_3:+87041952 | None:intergenic |
| AAATATGCTTTGCGACAAGA+TGG | 0.511086 | 7_3:+87039440 | None:intergenic |
| CGAAATTATGCTACTCATAG+CGG | 0.513273 | 7_3:-87039289 | Msa1133490:three_prime_UTR |
| AACCCTATTACTATTAGGTA+GGG | 0.513798 | 7_3:-87042016 | None:intergenic |
| AGTAAATGAATGATTAAGGC+AGG | 0.531386 | 7_3:+87039230 | None:intergenic |
| AACGGTTGTTAACTGCCGCT+GGG | 0.539675 | 7_3:-87039372 | Msa1133490:three_prime_UTR |
| TATTGGAAAGCATGCAAGCT+GGG | 0.540353 | 7_3:-87040444 | Msa1133490:CDS |
| CTATTGGAAAGCATGCAAGC+TGG | 0.542148 | 7_3:-87040445 | Msa1133490:CDS |
| AAACCTGCCCCAGATACAAA+AGG | 0.559565 | 7_3:-87039759 | Msa1133490:intron |
| GGTCAAAGAGTCCCGTGACT+TGG | 0.561465 | 7_3:+87040143 | None:intergenic |
| GAGCTCGTTTACAACTACTC+AGG | 0.561880 | 7_3:-87040102 | Msa1133490:CDS |
| CATCCTTACACGATAAGGCT+AGG | 0.574939 | 7_3:+87039543 | None:intergenic |
| GAAATTATGCTACTCATAGC+GGG | 0.575495 | 7_3:-87039288 | Msa1133490:three_prime_UTR |
| ACCCTATTACTATTAGGTAG+GGG | 0.579867 | 7_3:-87042015 | None:intergenic |
| GACACTTGTAACCAAGTCAC+GGG | 0.585819 | 7_3:-87040154 | Msa1133490:CDS |
| TGAGTAGTTGTAAACGAGCT+CGG | 0.589663 | 7_3:+87040104 | None:intergenic |
| ATTGACCTAGAGGAGCTGAA+AGG | 0.592410 | 7_3:-87039788 | Msa1133490:CDS |
| GAACACTTTGTAGTAACTGC+CGG | 0.593555 | 7_3:-87039405 | Msa1133490:three_prime_UTR |
| TGATGATATTCCAAGTTCCA+AGG | 0.603203 | 7_3:+87039647 | None:intergenic |
| CCCTATTACTATTAGGTAGG+GGG | 0.613513 | 7_3:-87042014 | None:intergenic |
| TGGAAAAGAGATTGACCTAG+AGG | 0.624141 | 7_3:-87039798 | Msa1133490:CDS |
| AATTGGTGACGTCTGTGTAG+AGG | 0.624172 | 7_3:+87041906 | None:intergenic |
| AGACACTTGTAACCAAGTCA+CGG | 0.624915 | 7_3:-87040155 | Msa1133490:CDS |
| ATTATACAAGTGAAGCGTTG+AGG | 0.626795 | 7_3:+87040398 | None:intergenic |
| AGCTCGTTTACAACTACTCA+GGG | 0.627963 | 7_3:-87040101 | Msa1133490:CDS |
| ATTGGTGACGTCTGTGTAGA+GGG | 0.634042 | 7_3:+87041907 | None:intergenic |
| CTCGGAATGAAGAGTGCGTG+TGG | 0.636758 | 7_3:+87040122 | None:intergenic |
| ACAACCGTTAGTCTAAGTGC+CGG | 0.637787 | 7_3:+87039386 | None:intergenic |
| ATTTGATGCTACTCCTGATG+AGG | 0.656826 | 7_3:-87039927 | Msa1133490:intron |
| TGTGTGCAGCTGCTAGAACA+GGG | 0.668610 | 7_3:+87040178 | None:intergenic |
| TAGCATCAAATCGAGCAGCA+AGG | 0.669820 | 7_3:+87039939 | None:intergenic |
| ACTGCCGGCACTTAGACTAA+CGG | 0.672983 | 7_3:-87039390 | Msa1133490:three_prime_UTR |
| ACGGTTGTTAACTGCCGCTG+GGG | 0.685528 | 7_3:-87039371 | Msa1133490:three_prime_UTR |
| GTAGAGGGAGAGACAGAGAG+TGG | 0.695759 | 7_3:+87041922 | None:intergenic |
| CGTCGATGAGCTTCATGGTG+CGG | 0.713327 | 7_3:+87041957 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAATAATTAACTTAAAAC+GGG | + | chr7_3:87039472-87039491 | None:intergenic | 10.0% |
| !!! | TATTTATATTTAACTTGTTA+TGG | - | chr7_3:87041105-87041124 | Msa1133490:intron | 10.0% |
| !!! | GAGAAAATGATAATTTTTAT+AGG | + | chr7_3:87039344-87039363 | None:intergenic | 15.0% |
| !! | AAAAAATTAAAAATTGGGTT+TGG | + | chr7_3:87040053-87040072 | None:intergenic | 15.0% |
| !! | TAAATACATAATTACATGTT+TGG | + | chr7_3:87041091-87041110 | None:intergenic | 15.0% |
| !! | ATAAGAGCAATATATGAATT+TGG | - | chr7_3:87039521-87039540 | Msa1133490:three_prime_UTR | 20.0% |
| !! | TGACAGTTTGAAAAATATTA+AGG | + | chr7_3:87040174-87040193 | None:intergenic | 20.0% |
| !!! | GTATATCTACTTTTATAGAT+TGG | + | chr7_3:87040596-87040615 | None:intergenic | 20.0% |
| !! | TGTAATTGATCCATAAAATT+AGG | - | chr7_3:87040648-87040667 | Msa1133490:intron | 20.0% |
| !! | AAATTATTGAATATGCTAGT+TGG | + | chr7_3:87041470-87041489 | None:intergenic | 20.0% |
| !! | TCATCATAACTAATGTTTAA+TGG | + | chr7_3:87041668-87041687 | None:intergenic | 20.0% |
| !! | TTAGTTATGATGAGATATTA+TGG | - | chr7_3:87041675-87041694 | Msa1133490:intron | 20.0% |
| !! | ATCAAGTAAATGAATGATTA+AGG | + | chr7_3:87041942-87041961 | None:intergenic | 20.0% |
| ! | GTACTCTTACACTTTAAATT+TGG | + | chr7_3:87039570-87039589 | None:intergenic | 25.0% |
| !!! | GTAATATTTTCAAGTGTTAG+TGG | - | chr7_3:87039614-87039633 | Msa1133490:CDS | 25.0% |
| ! | AGCTCTTATTATTTATAGTG+TGG | + | chr7_3:87039688-87039707 | None:intergenic | 25.0% |
| ! | CTATAAATAATAAGAGCTCA+TGG | - | chr7_3:87039690-87039709 | Msa1133490:intron | 25.0% |
| ! | ATGTTCTATTGTTATACTTG+TGG | + | chr7_3:87039893-87039912 | None:intergenic | 25.0% |
| ! | TATATGTAACTATGCAACAT+AGG | - | chr7_3:87040206-87040225 | Msa1133490:intron | 25.0% |
| ! | CTGAAATTAGAAACTTTAAC+TGG | + | chr7_3:87041140-87041159 | None:intergenic | 25.0% |
| !! | ACTGAATCTTTAAAAAGATG+TGG | - | chr7_3:87041179-87041198 | Msa1133490:intron | 25.0% |
| ! | GAAGATTCTACAGTAAAATA+TGG | - | chr7_3:87041264-87041283 | Msa1133490:intron | 25.0% |
| ! | AAATTATAGTAGTTGAGAGT+TGG | - | chr7_3:87041985-87042004 | Msa1133490:intron | 25.0% |
| GAGAAAGACTAACTTTGAAT+TGG | + | chr7_3:87039279-87039298 | None:intergenic | 30.0% | |
| GATGAGAAACACTTAATTCT+CGG | + | chr7_3:87039450-87039469 | None:intergenic | 30.0% | |
| GGAGAAATTATAGGAACATT+TGG | - | chr7_3:87039640-87039659 | Msa1133490:CDS | 30.0% | |
| AAATAATAAGAGCTCATGGA+TGG | - | chr7_3:87039694-87039713 | Msa1133490:intron | 30.0% | |
| CTACATATTCTCTTGTGAAT+TGG | + | chr7_3:87039744-87039763 | None:intergenic | 30.0% | |
| CAATTCACAAGAGAATATGT+AGG | - | chr7_3:87039742-87039761 | Msa1133490:intron | 30.0% | |
| TATACTTGTGGTAAGTACAA+GGG | + | chr7_3:87039881-87039900 | None:intergenic | 30.0% | |
| TTATACTTGTGGTAAGTACA+AGG | + | chr7_3:87039882-87039901 | None:intergenic | 30.0% | |
| !!! | TCAACACTTTTTCACTTCTT+TGG | - | chr7_3:87040281-87040300 | Msa1133490:intron | 30.0% |
| !!! | ACTTTTTCACTTCTTTGGTA+TGG | - | chr7_3:87040286-87040305 | Msa1133490:intron | 30.0% |
| ACTATGGTAAATGGTTATCA+GGG | - | chr7_3:87040310-87040329 | Msa1133490:intron | 30.0% | |
| CACTCAATAGCAATATTTGA+TGG | + | chr7_3:87040356-87040375 | None:intergenic | 30.0% | |
| !!! | AACTGACTTTTGAGATTAAG+TGG | + | chr7_3:87040389-87040408 | None:intergenic | 30.0% |
| CCAAATGTTGTGAATAGTTA+TGG | + | chr7_3:87040462-87040481 | None:intergenic | 30.0% | |
| CCATAACTATTCACAACATT+TGG | - | chr7_3:87040459-87040478 | Msa1133490:intron | 30.0% | |
| TATGTAACTATGTTTCTTGC+AGG | - | chr7_3:87040694-87040713 | Msa1133490:intron | 30.0% | |
| ATGTAACTATGTTTCTTGCA+GGG | - | chr7_3:87040695-87040714 | Msa1133490:intron | 30.0% | |
| GATCCTCTATAATTGAATGT+GGG | + | chr7_3:87040802-87040821 | None:intergenic | 30.0% | |
| AGATCCTCTATAATTGAATG+TGG | + | chr7_3:87040803-87040822 | None:intergenic | 30.0% | |
| ATAACATGATCCTCTTATGT+CGG | - | chr7_3:87040848-87040867 | Msa1133490:intron | 30.0% | |
| TAAATCATCCTTACACGATA+AGG | + | chr7_3:87041630-87041649 | None:intergenic | 30.0% | |
| GGACTCTAACTTATAAGATT+TGG | - | chr7_3:87041912-87041931 | Msa1133490:CDS | 30.0% | |
| AGTAAATGAATGATTAAGGC+AGG | + | chr7_3:87041938-87041957 | None:intergenic | 30.0% | |
| !!! | TCTTTTCTAGCTTTGTAGTT+TGG | - | chr7_3:87041962-87041981 | Msa1133490:intron | 30.0% |
| ! | TTATCATTTTCTCTTACCGC+CGG | - | chr7_3:87039351-87039370 | Msa1133490:three_prime_UTR | 35.0% |
| ACTGAAGCAATAAAGTAAGC+CGG | + | chr7_3:87039373-87039392 | None:intergenic | 35.0% | |
| ! | GTTGCTTTGCATATTTAGTC+CGG | - | chr7_3:87039405-87039424 | Msa1133490:three_prime_UTR | 35.0% |
| ACGATGTCAAGTAAGTTCTT+TGG | + | chr7_3:87039596-87039615 | None:intergenic | 35.0% | |
| !!! | ATTTTCAAGTGTTAGTGGAC+TGG | - | chr7_3:87039619-87039638 | Msa1133490:CDS | 35.0% |
| !! | TAGTGGACTGGAGAAATTAT+AGG | - | chr7_3:87039631-87039650 | Msa1133490:CDS | 35.0% |
| TTATAGTGTGGAGAGTTAGT+GGG | + | chr7_3:87039676-87039695 | None:intergenic | 35.0% | |
| TTTATAGTGTGGAGAGTTAG+TGG | + | chr7_3:87039677-87039696 | None:intergenic | 35.0% | |
| ATGTAGCTAATCCCATTTAG+TGG | - | chr7_3:87039931-87039950 | Msa1133490:CDS | 35.0% | |
| TGTAGCTAATCCCATTTAGT+GGG | - | chr7_3:87039932-87039951 | Msa1133490:CDS | 35.0% | |
| ! | CAAGTCTTATCCCACTAAAT+GGG | + | chr7_3:87039945-87039964 | None:intergenic | 35.0% |
| ACATAGGATAACTATCAACG+AGG | - | chr7_3:87040222-87040241 | Msa1133490:intron | 35.0% | |
| CACTATGGTAAATGGTTATC+AGG | - | chr7_3:87040309-87040328 | Msa1133490:intron | 35.0% | |
| !! | AGAGCTGGTTCCTAATTTTA+TGG | + | chr7_3:87040661-87040680 | None:intergenic | 35.0% |
| !! | ATTATACAAGTGAAGCGTTG+AGG | + | chr7_3:87040770-87040789 | None:intergenic | 35.0% |
| TGACCCACATTCAATTATAG+AGG | - | chr7_3:87040796-87040815 | Msa1133490:intron | 35.0% | |
| ATACAAGTCCTAGCATCATT+CGG | + | chr7_3:87040886-87040905 | None:intergenic | 35.0% | |
| ! | TGACAAACCTTTTGTATCTG+GGG | + | chr7_3:87041416-87041435 | None:intergenic | 35.0% |
| ! | CTGACAAACCTTTTGTATCT+GGG | + | chr7_3:87041417-87041436 | None:intergenic | 35.0% |
| CAGATACAAAAGGTTTGTCA+GGG | - | chr7_3:87041416-87041435 | Msa1133490:intron | 35.0% | |
| ATATGCTAGTTGGCACAAAA+AGG | + | chr7_3:87041460-87041479 | None:intergenic | 35.0% | |
| TGATGATATTCCAAGTTCCA+AGG | + | chr7_3:87041521-87041540 | None:intergenic | 35.0% | |
| AAATATGCTTTGCGACAAGA+TGG | + | chr7_3:87041728-87041747 | None:intergenic | 35.0% | |
| CGTCATTTACTTGTGTCAAT+AGG | - | chr7_3:87041823-87041842 | Msa1133490:intron | 35.0% | |
| GCTATGAGTAGCATAATTTC+GGG | + | chr7_3:87041877-87041896 | None:intergenic | 35.0% | |
| CGCTATGAGTAGCATAATTT+CGG | + | chr7_3:87041878-87041897 | None:intergenic | 35.0% | |
| CGAAATTATGCTACTCATAG+CGG | - | chr7_3:87041876-87041895 | Msa1133490:intron | 35.0% | |
| GAAATTATGCTACTCATAGC+GGG | - | chr7_3:87041877-87041896 | Msa1133490:intron | 35.0% | |
| ! | CATAGCGGGAAGTTATATTA+TGG | - | chr7_3:87041891-87041910 | Msa1133490:intron | 35.0% |
| !! | TAGTAGTTGAGAGTTGGTAA+TGG | - | chr7_3:87041991-87042010 | Msa1133490:intron | 35.0% |
| TTTGCATATTTAGTCCGGAC+TGG | - | chr7_3:87039410-87039429 | Msa1133490:three_prime_UTR | 40.0% | |
| ACTTAATTCTCGGTCTGGAT+TGG | + | chr7_3:87039440-87039459 | None:intergenic | 40.0% | |
| GAAACACTTAATTCTCGGTC+TGG | + | chr7_3:87039445-87039464 | None:intergenic | 40.0% | |
| ACAAGAGAATATGTAGGACG+AGG | - | chr7_3:87039748-87039767 | Msa1133490:intron | 40.0% | |
| CAAGAGAATATGTAGGACGA+GGG | - | chr7_3:87039749-87039768 | Msa1133490:intron | 40.0% | |
| !!! | ATTTTGATTGTAGCGCGACA+GGG | + | chr7_3:87039779-87039798 | None:intergenic | 40.0% |
| !!! | TATTTTGATTGTAGCGCGAC+AGG | + | chr7_3:87039780-87039799 | None:intergenic | 40.0% |
| ! | CCAAGTCTTATCCCACTAAA+TGG | + | chr7_3:87039946-87039965 | None:intergenic | 40.0% |
| CCATTTAGTGGGATAAGACT+TGG | - | chr7_3:87039943-87039962 | Msa1133490:CDS | 40.0% | |
| ACTTCTTTGGTATGGCACTA+TGG | - | chr7_3:87040294-87040313 | Msa1133490:intron | 40.0% | |
| TGGTATGGCACTATGGTAAA+TGG | - | chr7_3:87040301-87040320 | Msa1133490:intron | 40.0% | |
| !! | CTATTCACAACATTTGGTGC+TGG | - | chr7_3:87040465-87040484 | Msa1133490:intron | 40.0% |
| CCATCTTGATTAGGAGGAAT+CGG | + | chr7_3:87040537-87040556 | None:intergenic | 40.0% | |
| TTGCAATCGCCATCTTGATT+AGG | + | chr7_3:87040546-87040565 | None:intergenic | 40.0% | |
| TAAACACTTCAGCTAAGAGC+TGG | + | chr7_3:87040676-87040695 | None:intergenic | 40.0% | |
| TGTTTCTTGCAGGGAACTAT+TGG | - | chr7_3:87040704-87040723 | Msa1133490:intron | 40.0% | |
| ! | TATTGGAAAGCATGCAAGCT+GGG | - | chr7_3:87040721-87040740 | Msa1133490:intron | 40.0% |
| TCTCTCATTACCGACATAAG+AGG | + | chr7_3:87040861-87040880 | None:intergenic | 40.0% | |
| ! | CAGGGAAAATATCTGGAATC+TGG | + | chr7_3:87040972-87040991 | None:intergenic | 40.0% |
| GCTAGAACAGGGAAAATATC+TGG | + | chr7_3:87040979-87040998 | None:intergenic | 40.0% | |
| AGACACTTGTAACCAAGTCA+CGG | - | chr7_3:87041010-87041029 | Msa1133490:intron | 40.0% | |
| TGAGTAGTTGTAAACGAGCT+CGG | + | chr7_3:87041064-87041083 | None:intergenic | 40.0% | |
| AGCTCGTTTACAACTACTCA+GGG | - | chr7_3:87041064-87041083 | Msa1133490:intron | 40.0% | |
| AAATCGAGCAGCAAGGATAT+AGG | + | chr7_3:87041222-87041241 | None:intergenic | 40.0% | |
| ATTTGATGCTACTCCTGATG+AGG | - | chr7_3:87041238-87041257 | Msa1133490:intron | 40.0% | |
| TAGAATCTTCTCACCTCATC+AGG | + | chr7_3:87041254-87041273 | None:intergenic | 40.0% | |
| TCCAATGACGAGTTTCTCTA+TGG | + | chr7_3:87041351-87041370 | None:intergenic | 40.0% | |
| TGGAAAAGAGATTGACCTAG+AGG | - | chr7_3:87041367-87041386 | Msa1133490:intron | 40.0% | |
| ! | CCTGACAAACCTTTTGTATC+TGG | + | chr7_3:87041418-87041437 | None:intergenic | 40.0% |
| CCAGATACAAAAGGTTTGTC+AGG | - | chr7_3:87041415-87041434 | Msa1133490:intron | 40.0% | |
| GCATTACAAGATATCTGCCT+TGG | - | chr7_3:87041501-87041520 | Msa1133490:intron | 40.0% | |
| AAGATATCTGCCTTGGAACT+TGG | - | chr7_3:87041508-87041527 | Msa1133490:intron | 40.0% | |
| GAACACTTTGTAGTAACTGC+CGG | - | chr7_3:87041760-87041779 | Msa1133490:intron | 40.0% | |
| ! | AAATGACGTTTTTACCCCAG+CGG | + | chr7_3:87041811-87041830 | None:intergenic | 40.0% |
| GTCGAACAGAACAGAAGAGA+AGG | - | chr7_3:87039173-87039192 | Msa1133490:three_prime_UTR | 45.0% | |
| AAGCTCATCGACGACATCAA+TGG | - | chr7_3:87039218-87039237 | Msa1133490:three_prime_UTR | 45.0% | |
| !! | ATTGGTGACGTCTGTGTAGA+GGG | + | chr7_3:87039261-87039280 | None:intergenic | 45.0% |
| !! | AATTGGTGACGTCTGTGTAG+AGG | + | chr7_3:87039262-87039281 | None:intergenic | 45.0% |
| GAAGCAATAAAGTAAGCCGG+CGG | + | chr7_3:87039370-87039389 | None:intergenic | 45.0% | |
| TCTTGTGAATTGGCGATGTG+GGG | + | chr7_3:87039734-87039753 | None:intergenic | 45.0% | |
| CTCTTGTGAATTGGCGATGT+GGG | + | chr7_3:87039735-87039754 | None:intergenic | 45.0% | |
| TCTCTTGTGAATTGGCGATG+TGG | + | chr7_3:87039736-87039755 | None:intergenic | 45.0% | |
| ! | GCTTTGAGCTAAAGGGATCT+TGG | + | chr7_3:87039826-87039845 | None:intergenic | 45.0% |
| !! | GAGAGGAGCTTTGAGCTAAA+GGG | + | chr7_3:87039833-87039852 | None:intergenic | 45.0% |
| !! | TGAGAGGAGCTTTGAGCTAA+AGG | + | chr7_3:87039834-87039853 | None:intergenic | 45.0% |
| !! | GGGAGTGTGCTTGATTTTAG+TGG | - | chr7_3:87040330-87040349 | Msa1133490:intron | 45.0% |
| CCGATTCCTCCTAATCAAGA+TGG | - | chr7_3:87040534-87040553 | Msa1133490:intron | 45.0% | |
| CAATCGCCATCTTGATTAGG+AGG | + | chr7_3:87040543-87040562 | None:intergenic | 45.0% | |
| ! | CTATTGGAAAGCATGCAAGC+TGG | - | chr7_3:87040720-87040739 | Msa1133490:intron | 45.0% |
| GAGAGAATCCGAATGATGCT+AGG | - | chr7_3:87040875-87040894 | Msa1133490:intron | 45.0% | |
| GACACTTGTAACCAAGTCAC+GGG | - | chr7_3:87041011-87041030 | Msa1133490:intron | 45.0% | |
| GAGCTCGTTTACAACTACTC+AGG | - | chr7_3:87041063-87041082 | Msa1133490:intron | 45.0% | |
| TAGCATCAAATCGAGCAGCA+AGG | + | chr7_3:87041229-87041248 | None:intergenic | 45.0% | |
| GCCATAGAGAAACTCGTCAT+TGG | - | chr7_3:87041347-87041366 | Msa1133490:intron | 45.0% | |
| ATTGACCTAGAGGAGCTGAA+AGG | - | chr7_3:87041377-87041396 | Msa1133490:intron | 45.0% | |
| TTGACCTAGAGGAGCTGAAA+GGG | - | chr7_3:87041378-87041397 | Msa1133490:intron | 45.0% | |
| AAACCTGCCCCAGATACAAA+AGG | - | chr7_3:87041406-87041425 | Msa1133490:intron | 45.0% | |
| !! | AAACCTTTTGTATCTGGGGC+AGG | + | chr7_3:87041412-87041431 | None:intergenic | 45.0% |
| AAGCATCACGAGCAGCTATT+CGG | + | chr7_3:87041564-87041583 | None:intergenic | 45.0% | |
| CATCCTTACACGATAAGGCT+AGG | + | chr7_3:87041625-87041644 | None:intergenic | 45.0% | |
| ! | ACAACCGTTAGTCTAAGTGC+CGG | + | chr7_3:87041782-87041801 | None:intergenic | 45.0% |
| !! | TAATAATAATTAACTTAAAA+CGG | + | chr7_3:87039473-87039492 | None:intergenic | 5.0% |
| !! | AGTTTAAAAAATTAAAAATT+GGG | + | chr7_3:87040058-87040077 | None:intergenic | 5.0% |
| !! | AAGTTTAAAAAATTAAAAAT+TGG | + | chr7_3:87040059-87040078 | None:intergenic | 5.0% |
| GATGTCGTCGATGAGCTTCA+TGG | + | chr7_3:87039216-87039235 | None:intergenic | 50.0% | |
| !! | CATATTTAGTCCGGACTGGC+CGG | - | chr7_3:87039414-87039433 | Msa1133490:three_prime_UTR | 50.0% |
| !! | AATTCTCGGTCTGGATTGGC+CGG | + | chr7_3:87039436-87039455 | None:intergenic | 50.0% |
| CAGCAGTGAGCAGTAAGGTT+GGG | + | chr7_3:87039803-87039822 | None:intergenic | 50.0% | |
| AAAGCTCCTCTCACCACCAA+GGG | - | chr7_3:87039841-87039860 | Msa1133490:intron | 50.0% | |
| AAGCATGCAAGCTGGGACAT+TGG | - | chr7_3:87040728-87040747 | Msa1133490:intron | 50.0% | |
| GCGTTGAGGAATGCAACTTC+TGG | + | chr7_3:87040756-87040775 | None:intergenic | 50.0% | |
| TCTGGTGCAGTTGAGAACAG+TGG | + | chr7_3:87040954-87040973 | None:intergenic | 50.0% | |
| TGTGTGCAGCTGCTAGAACA+GGG | + | chr7_3:87040990-87041009 | None:intergenic | 50.0% | |
| TTGTGTGCAGCTGCTAGAAC+AGG | + | chr7_3:87040991-87041010 | None:intergenic | 50.0% | |
| !! | GCTCCTAGCCTTATCGTGTA+AGG | - | chr7_3:87041619-87041638 | Msa1133490:intron | 50.0% |
| ACTGCCGGCACTTAGACTAA+CGG | - | chr7_3:87041775-87041794 | Msa1133490:intron | 50.0% | |
| TAACGGTTGTTAACTGCCGC+TGG | - | chr7_3:87041792-87041811 | Msa1133490:intron | 50.0% | |
| AACGGTTGTTAACTGCCGCT+GGG | - | chr7_3:87041793-87041812 | Msa1133490:intron | 50.0% | |
| CGTCGATGAGCTTCATGGTG+CGG | + | chr7_3:87039211-87039230 | None:intergenic | 55.0% | |
| GTAGAGGGAGAGACAGAGAG+TGG | + | chr7_3:87039246-87039265 | None:intergenic | 55.0% | |
| GAGAGTTAGTGGGAGTGGTG+AGG | + | chr7_3:87039666-87039685 | None:intergenic | 55.0% | |
| GTGTGGAGAGTTAGTGGGAG+TGG | + | chr7_3:87039671-87039690 | None:intergenic | 55.0% | |
| TTGATTGTAGCGCGACAGGG+AGG | + | chr7_3:87039776-87039795 | None:intergenic | 55.0% | |
| GCAGCAGTGAGCAGTAAGGT+TGG | + | chr7_3:87039804-87039823 | None:intergenic | 55.0% | |
| CTTGGCAGCAGTGAGCAGTA+AGG | + | chr7_3:87039808-87039827 | None:intergenic | 55.0% | |
| CAAAGCTCCTCTCACCACCA+AGG | - | chr7_3:87039840-87039859 | Msa1133490:intron | 55.0% | |
| AAGCTCCTCTCACCACCAAG+GGG | - | chr7_3:87039842-87039861 | Msa1133490:intron | 55.0% | |
| GGTCAAAGAGTCCCGTGACT+TGG | + | chr7_3:87041025-87041044 | None:intergenic | 55.0% | |
| ! | CTCGGAATGAAGAGTGCGTG+TGG | + | chr7_3:87041046-87041065 | None:intergenic | 55.0% |
| CTCTCCCTTTCAGCTCCTCT+AGG | + | chr7_3:87041385-87041404 | None:intergenic | 55.0% | |
| ACGGTTGTTAACTGCCGCTG+GGG | - | chr7_3:87041794-87041813 | Msa1133490:intron | 55.0% | |
| AGCTCCTCTCACCACCAAGG+GGG | - | chr7_3:87039843-87039862 | Msa1133490:intron | 60.0% | |
| !! | TCTGGATTGGCCGGCCAGTC+CGG | + | chr7_3:87039427-87039446 | None:intergenic | 65.0% |
| TCCTCTCACCACCAAGGGGG+AGG | - | chr7_3:87039846-87039865 | Msa1133490:intron | 65.0% | |
| CCTCTCACCACCAAGGGGGA+GGG | - | chr7_3:87039847-87039866 | Msa1133490:intron | 65.0% | |
| CTCTCACCACCAAGGGGGAG+GGG | - | chr7_3:87039848-87039867 | Msa1133490:intron | 65.0% | |
| TCTCACCACCAAGGGGGAGG+GGG | - | chr7_3:87039849-87039868 | Msa1133490:intron | 65.0% | |
| !! | CCCTCCCCCTTGGTGGTGAG+AGG | + | chr7_3:87039850-87039869 | None:intergenic | 70.0% |
| ATCGACCCCCTCCCCCTTGG+TGG | + | chr7_3:87039857-87039876 | None:intergenic | 70.0% | |
| !! | GGCATCGACCCCCTCCCCCT+TGG | + | chr7_3:87039860-87039879 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_3 | gene | 87039164 | 87042023 | 87039164 | ID=Msa1133490;Name=Msa1133490 |
| chr7_3 | mRNA | 87039164 | 87042023 | 87039164 | ID=Msa1133490-mRNA-1;Parent=Msa1133490;Name=Msa1133490-mRNA-1;_AED=0.13;_eAED=0.13;_QI=30|1|1|1|0.83|0.71|7|435|172 |
| chr7_3 | exon | 87039164 | 87039685 | 87039164 | ID=Msa1133490-mRNA-1:exon:26184;Parent=Msa1133490-mRNA-1 |
| chr7_3 | exon | 87039760 | 87039846 | 87039760 | ID=Msa1133490-mRNA-1:exon:26183;Parent=Msa1133490-mRNA-1 |
| chr7_3 | exon | 87039928 | 87040011 | 87039928 | ID=Msa1133490-mRNA-1:exon:26182;Parent=Msa1133490-mRNA-1 |
| chr7_3 | exon | 87040092 | 87040214 | 87040092 | ID=Msa1133490-mRNA-1:exon:26181;Parent=Msa1133490-mRNA-1 |
| chr7_3 | exon | 87040405 | 87040471 | 87040405 | ID=Msa1133490-mRNA-1:exon:26180;Parent=Msa1133490-mRNA-1 |
| chr7_3 | exon | 87041902 | 87041976 | 87041902 | ID=Msa1133490-mRNA-1:exon:26179;Parent=Msa1133490-mRNA-1 |
| chr7_3 | exon | 87041998 | 87042023 | 87041998 | ID=Msa1133490-mRNA-1:exon:26178;Parent=Msa1133490-mRNA-1 |
| chr7_3 | five_prime_UTR | 87041998 | 87042023 | 87041998 | ID=Msa1133490-mRNA-1:five_prime_utr;Parent=Msa1133490-mRNA-1 |
| chr7_3 | five_prime_UTR | 87041973 | 87041976 | 87041973 | ID=Msa1133490-mRNA-1:five_prime_utr;Parent=Msa1133490-mRNA-1 |
| chr7_3 | CDS | 87041902 | 87041972 | 87041902 | ID=Msa1133490-mRNA-1:cds;Parent=Msa1133490-mRNA-1 |
| chr7_3 | CDS | 87040405 | 87040471 | 87040405 | ID=Msa1133490-mRNA-1:cds;Parent=Msa1133490-mRNA-1 |
| chr7_3 | CDS | 87040092 | 87040214 | 87040092 | ID=Msa1133490-mRNA-1:cds;Parent=Msa1133490-mRNA-1 |
| chr7_3 | CDS | 87039928 | 87040011 | 87039928 | ID=Msa1133490-mRNA-1:cds;Parent=Msa1133490-mRNA-1 |
| chr7_3 | CDS | 87039760 | 87039846 | 87039760 | ID=Msa1133490-mRNA-1:cds;Parent=Msa1133490-mRNA-1 |
| chr7_3 | CDS | 87039599 | 87039685 | 87039599 | ID=Msa1133490-mRNA-1:cds;Parent=Msa1133490-mRNA-1 |
| chr7_3 | three_prime_UTR | 87039164 | 87039598 | 87039164 | ID=Msa1133490-mRNA-1:three_prime_utr;Parent=Msa1133490-mRNA-1 |
| Gene Sequence |
| Protein sequence |
